HHsearch alignment for GI: 254780711 and conserved domain: cd01987
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=94.97 E-value=0.36 Score=29.18 Aligned_cols=96 Identities=14% Similarity=0.198 Sum_probs=66.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC--------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 62344333468899999999861489507820542210--------0477999985103474222332103689999999
Q gi|254780711|r 105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP--------AAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~--------aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
T Consensus 3 LV~vd~s~~s~~lir~a~rlA~~~~a~l~vl~V~~~~~~~~~~~~~~~l~~~~~la~~lga~~~~~-~~~d~~~---~I~ 78 (124)
T cd01987 3 LVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTL-PGDDVAE---AIV 78 (124)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCHHH---HHH
T ss_conf 999589850799999999999964998999999559756589799999999999999859989999-4799899---999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 9997415886998334422211246899
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHINDSLMQE 204 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~E 204 (461)
T Consensus 79 ~~A~~~~~t~IVlG~~~~~~~~~~~~gS 106 (124)
T cd01987 79 EFAREHNVTQIVVGKSRRSRWRELFRGS 106 (124)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHCCC
T ss_conf 9999849989997689885468872388