HHsearch alignment for GI: 254780711 and conserved domain: cd02034

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.38  E-value=0.00092  Score=48.93  Aligned_cols=85  Identities=21%  Similarity=0.207  Sum_probs=52.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC----CCCCCCCC--CC----HHHHHH
Q ss_conf             996234433346889999999986148950782054221004779999851034----74222332--10----368999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ----VDTLEVIP--EQ----SPEKIA  172 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~----v~~~~~~~--~~----dp~~i~  172 (461)
T Consensus         2 ia~~GKGGvGKtt~~~~la~~l~~-~g~~vl~iD~Dp~-----dlpe~~~~~~~~~~~l~~lg~~~~~g~GC~C~~n~ll   75 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADPD-----DLPERLSVEVGEIKLLLVMGMGRPGGEGCYCPENALL   75 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC-----CCHHHHCEECCCCCEEEEEECCCCCCCCEECCHHHHH
T ss_conf             789889977499999999999997-8996999989897-----1235542331787079999734358994088257899


Q ss_pred             HHHHHHHHHCCCCEEEEECCC
Q ss_conf             999999974158869983344
Q gi|254780711|r  173 IRATQSARDGGYDAVILDTAG  193 (461)
Q Consensus       173 ~~a~~~a~~~~~D~iiiDTaG  193 (461)
T Consensus        76 ~~~l~~l~~~~~~~VvvD~eA   96 (116)
T cd02034          76 NALLRHLVLTRDEQVVVDTEA   96 (116)
T ss_pred             HHHHHHHCCCCCCEEEEECCC
T ss_conf             999999706799899996785