HHsearch alignment for GI: 254780711 and conserved domain: cd02117
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=98.34 E-value=1e-05 Score=63.82 Aligned_cols=163 Identities=23% Similarity=0.267 Sum_probs=90.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-----------HHHH-HHHH--HC-----------CC
Q ss_conf 8996234433346889999999986148950782054221004-----------7799-9985--10-----------34
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA-----------QEQL-RYLG--EQ-----------IQ 156 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA-----------~eQL-~~~a--~~-----------~~ 156 (461)
T Consensus 2 ~iaiyGKGGVGKTTts~NLaaaLA~-~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~g 80 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAE-MGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGG 80 (212)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCC
T ss_conf 5999889835687789999999998-699699990389987330311997787199998752786644566789966887
Q ss_pred CCCCCCC---CC-----CHHHHHHHHHHHH--HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH---
Q ss_conf 7422233---21-----0368999999999--974158869983344222112468999999851385110003101---
Q gi|254780711|r 157 VDTLEVI---PE-----QSPEKIAIRATQS--ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--- 223 (461)
Q Consensus 157 v~~~~~~---~~-----~dp~~i~~~a~~~--a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--- 223 (461)
T Consensus 81 v~~veaggp~~g~~~ag~~i~~-~~~ll~~~~~~~~~~D~IliD~lGdvv~~gf~~-p---i~~-~~Ad~vlIvtt~E~~ 154 (212)
T cd02117 81 VKCVESGGPEPGVGCAGRGVIT-AVNLLEKEGFAEDDLDVVLYDVLGDVVCGGFAM-P---IRE-GKADEIYIVTSGEFM 154 (212)
T ss_pred EEEEECCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEECCCCCEECCCCC-C---CCC-CCCCEEEEECCCCHH
T ss_conf 0899889977676545411788-999999741002579999996588540356334-3---211-668889998069357
Q ss_pred -HCC-HHHHHHHHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHH
Q ss_conf -112-2568888988763--58440776411576633036777888478730
Q gi|254780711|r 224 -LTG-QDAVHLARNFDKI--VDLTGIILTRMDGDGRGGAALSMRTVTGKPIK 271 (461)
Q Consensus 224 -~~G-q~a~~~a~~F~~~--~~i~giIlTKlD~~akgG~als~~~~~~~PI~ 271 (461)
T Consensus 155 Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~~~~~~i~~f~~~~g~~vl 206 (212)
T cd02117 155 ALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVI 206 (212)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 8898899999999997367981489998467888649999999998399189