HHsearch alignment for GI: 254780711 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.57 E-value=0.041 Score=36.33 Aligned_cols=89 Identities=22% Similarity=0.128 Sum_probs=48.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
T Consensus 26 Eiv~ilGpNGaGKSTllk~i~G~l~p~~G~-i~~---~g~~~~~~pq~--------~~-L-SGGqrQ-----Rv~iAral 86 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDN-DEW---DGITPVYKPQY--------ID-L-SGGELQ-----RVAIAAAL 86 (177)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC-EEE---CCCCEECCCCC--------CC-C-CHHHHH-----HHHHHHHH
T ss_conf 899998999999999999996886788994-666---68612215551--------50-7-989999-----99999998
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 41588699833442221124689999998
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIK 209 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~ 209 (461)
T Consensus 87 ~~~p~lllLDEPt-s~LD~~~r~~i~~~i 114 (177)
T cd03222 87 LRNATFYLFDEPS-AYLDIEQRLNAARAI 114 (177)
T ss_pred HCCCCEEEECCCC-CCCCHHHHHHHHHHH
T ss_conf 2399999974886-538999999999999