HHsearch alignment for GI: 254780711 and conserved domain: cd03230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.059 Score=35.14 Aligned_cols=46 Identities=28% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 02588418996234433346889999999986148950782054221
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
T Consensus 21 l~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~~G-~i~i~g~~~~~ 66 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG-EIKVLGKDIKK 66 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf 78879939999878997999999999768577878-89999999886