HHsearch alignment for GI: 254780711 and conserved domain: cd03233
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.053 Score=35.52 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=53.8
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH---CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 0025884189962344333468899999999861---4895078205422100477999985103474222332103689
Q gi|254780711|r 94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTL---KKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEK 170 (461)
Q Consensus 94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~---~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~ 170 (461)
T Consensus 27 s~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G-~i~~~g~~~~~~~-----~~~~--~~~~~v~q~~~~~~~l 98 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG-DIHYNGIPYKEFA-----EKYP--GEIIYVSEEDVHFPTL 98 (202)
T ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-EEEECCEECCHHH-----HHHH--CCEEEECCCCCCCCCC
T ss_conf 889809849999989999889999998378789875137-9999999940514-----8642--0199986732237688
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHH
Q ss_conf 9999999997415886998334422211246899999985138511000310-111225688
Q gi|254780711|r 171 IAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVH 231 (461)
Q Consensus 171 i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~ 231 (461)
T Consensus 99 tv~e~l~~~~~~~~~~~~~~LSg------G-qkqRv~iA~aL~~~P~illlDEPt~gLD~~~ 153 (202)
T cd03233 99 TVRETLDFALRCKGNEFVRGISG------G-ERKRVSIAEALVSRASVLCWDNSTRGLDSST 153 (202)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCH------H-HHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 09999999998465874445899------9-9999999999952998899838765689999