HHsearch alignment for GI: 254780711 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.95 E-value=0.1 Score=33.28 Aligned_cols=60 Identities=18% Similarity=0.349 Sum_probs=31.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT 159 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~ 159 (461)
T Consensus 19 ~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~l~~ 78 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGK-ARLISFLPKFSRNKLIFIDQLQFLID-VGLGY 78 (176)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHC-CHHHCCHHHCCCCCEEEHHHHHHHHH-CCCCC
T ss_conf 89989999999999899999988876103-11203210137553688577999997-48866