HHsearch alignment for GI: 254780711 and conserved domain: cd03240

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.50  E-value=0.013  Score=40.11  Aligned_cols=30  Identities=33%  Similarity=0.679  Sum_probs=20.9

Q ss_pred             CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             210002588418996234433346889999999
Q gi|254780711|r   91 IELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYH  123 (461)
Q Consensus        91 ~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~  123 (461)
T Consensus        16 ~~i~f~~~---itaivG~NGaGKSTLl~~i~~~   45 (204)
T cd03240          16 SEIEFFSP---LTLIVGQNGAGKTTIIEALKYA   45 (204)
T ss_pred             CEEEEECC---EEEEECCCCCCHHHHHHHHHHC
T ss_conf             35885088---8999989999999999998630