HHsearch alignment for GI: 254780711 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.08 E-value=0.06 Score=35.06 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 0025884189962344333468899999999861489507820542210
Q gi|254780711|r 94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP 142 (461)
Q Consensus 94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~ 142 (461)
T Consensus 22 ~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G-~i~i~g~~i~~~ 69 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EITLDGVPVSDL 69 (178)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCC-EEEECCEEHHHH
T ss_conf 899869999999999987599999999861766788-699999988997