HHsearch alignment for GI: 254780711 and conserved domain: cd03267
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.78 E-value=0.012 Score=40.32 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 000258841899623443334688999999998614895078205422
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
T Consensus 40 vsf~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G-~I~v~G~~~~ 86 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG-EVRVAGLVPW 86 (236)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECC
T ss_conf 0578848959999999983099999999649488715-9999999851