HHsearch alignment for GI: 254780711 and conserved domain: cd04165
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.22 E-value=0.0015 Score=47.20 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=41.0
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9741588699833442221124689999998513851100031011122-----56888898876358440776411576
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARNFDKIVDLTGIILTRMDGD 253 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~F~~~~~i~giIlTKlD~~ 253 (461)
T Consensus 79 ~~~~~k~it~iD~pGH~~y~kt~i~----G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~--ip~-~vvitKiDl~ 151 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLF----GLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALN--IPV-FVVVTKIDLA 151 (224)
T ss_pred ECCCCCEEEEEECCCHHHHHHHHHH----HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC--CCE-EEEEECCCCC
T ss_conf 1367867999978873999999998----76355689899993178897799999999999839--998-9999897768
Q ss_pred C
Q ss_conf 6
Q gi|254780711|r 254 G 254 (461)
Q Consensus 254 a 254 (461)
T Consensus 152 ~ 152 (224)
T cd04165 152 P 152 (224)
T ss_pred C
T ss_conf 9