Query         gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 461
No_of_seqs    199 out of 3082
Neff          5.5 
Searched_HMMs 39220
Date          Sun May 29 20:24:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780711.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00959 ffh signal recogniti 100.0       0       0 1281.5  37.7  428    2-429     1-439 (439)
  2 COG0541 Ffh Signal recognition 100.0       0       0 1158.5  46.0  437    1-439     1-437 (451)
  3 PRK10867 signal recognition pa 100.0       0       0 1144.9  46.2  441    1-442     1-442 (453)
  4 PRK00771 signal recognition pa 100.0       0       0 1095.1  44.4  429    1-438     2-430 (433)
  5 TIGR01425 SRP54_euk signal rec 100.0       0       0 1006.6  24.6  425    1-426     1-453 (453)
  6 KOG0780 consensus              100.0       0       0  944.2  37.4  431    1-435     2-434 (483)
  7 TIGR00064 ftsY signal recognit 100.0       0       0  659.8  22.2  268   27-295     3-284 (284)
  8 PRK10416 cell division protein 100.0       0       0  616.6  28.7  284    7-299   210-499 (499)
  9 COG0552 FtsY Signal recognitio 100.0       0       0  591.9  25.5  290    2-296    34-340 (340)
 10 PRK06731 flhF flagellar biosyn 100.0       0       0  547.5  26.2  264   20-297     4-269 (270)
 11 PRK12726 flagellar biosynthesi 100.0       0       0  452.2  22.6  215   79-299   184-402 (407)
 12 KOG0781 consensus              100.0       0       0  441.3  23.9  288    7-295   278-586 (587)
 13 PRK12723 flagellar biosynthesi 100.0       0       0  432.5  27.5  267   30-309   110-384 (388)
 14 pfam00448 SRP54 SRP54-type pro 100.0       0       0  445.6  18.6  196  100-296     1-196 (196)
 15 PRK12724 flagellar biosynthesi 100.0       0       0  405.4  24.4  263   29-303   155-423 (432)
 16 PRK05703 flhF flagellar biosyn 100.0       0       0  391.7  23.5  253   28-300   151-406 (412)
 17 cd03115 SRP The signal recogni 100.0       0       0  390.1  16.8  173  101-274     1-173 (173)
 18 PRK06995 flhF flagellar biosyn 100.0 1.4E-45       0  368.2  23.1  250   32-299   119-371 (404)
 19 PRK11889 flhF flagellar biosyn 100.0 1.4E-45       0  367.3  21.8  253   30-296   179-434 (436)
 20 COG1419 FlhF Flagellar GTP-bin 100.0 3.5E-44       0  357.3  21.6  219   73-300   178-399 (407)
 21 PRK12727 flagellar biosynthesi 100.0 6.1E-41 1.4E-45  332.6  22.7  237   37-294   298-537 (557)
 22 pfam02978 SRP_SPB Signal pepti 100.0 4.3E-31 1.1E-35  257.5  10.1  100  327-427     1-100 (100)
 23 TIGR03499 FlhF flagellar biosy  99.9   1E-26 2.6E-31  224.1  15.7  149   28-193   133-282 (282)
 24 PRK09841 cryptic autophosphory  98.8 2.4E-07 6.2E-12   76.2  12.8  148   97-253   528-706 (726)
 25 TIGR03029 EpsG chain length de  98.7 1.2E-05 2.9E-10   63.4  19.0  142   99-249   102-274 (274)
 26 PRK11519 tyrosine kinase; Prov  98.7 9.9E-07 2.5E-11   71.6  13.3  149   96-253   522-701 (720)
 27 cd00550 ArsA_ATPase Oxyanion-t  98.7 4.8E-07 1.2E-11   74.0  11.4  148  101-251     1-200 (254)
 28 pfam02374 ArsA_ATPase Anion-tr  98.6 1.6E-06 4.1E-11   70.0  12.6   38  101-139     2-39  (304)
 29 PHA02518 ParA-like protein; Pr  98.6 8.3E-07 2.1E-11   72.2  10.3  152  102-271     2-165 (211)
 30 pfam07015 VirC1 VirC1 protein.  98.6 1.2E-06 3.1E-11   70.9  10.8  136  102-253     3-153 (231)
 31 cd03114 ArgK-like The function  98.6 9.8E-07 2.5E-11   71.6  10.1  137  102-251     1-148 (148)
 32 PRK13849 putative crown gall t  98.5 1.3E-06 3.3E-11   70.7  10.6  135  102-252     3-152 (231)
 33 cd02035 ArsA ArsA ATPase funct  98.5 2.7E-06 6.9E-11   68.3  12.2  144  102-251     1-181 (217)
 34 pfam01656 CbiA CobQ/CobB/MinD/  98.5 1.5E-06 3.8E-11   70.2   9.9  155  107-271     6-198 (212)
 35 TIGR03018 pepcterm_TyrKin exop  98.5 4.2E-06 1.1E-10   66.8  12.0  143   96-247    31-206 (207)
 36 PRK09435 arginine/ornithine tr  98.5 5.9E-06 1.5E-10   65.6  12.1  155   97-265    46-212 (325)
 37 KOG0924 consensus               98.5 1.3E-05 3.2E-10   63.2  13.8  200   77-311   359-587 (1042)
 38 COG1341 Predicted GTPase or GT  98.4 3.8E-06 9.7E-11   67.1  10.4  124   93-223    66-210 (398)
 39 pfam02492 cobW CobW/HypB/UreG,  98.4   3E-06 7.7E-11   67.9   9.9  142  102-253     2-150 (174)
 40 COG1703 ArgK Putative periplas  98.4   2E-05   5E-10   61.7  12.8  155   93-264    44-210 (323)
 41 PRK13869 plasmid-partitioning   98.3 1.5E-05 3.8E-10   62.6  11.8   43   98-141   119-162 (405)
 42 cd02117 NifH_like This family   98.3   1E-05 2.6E-10   63.8  10.9  163  102-271     2-206 (212)
 43 COG0378 HypB Ni2+-binding GTPa  98.3 3.4E-06 8.7E-11   67.5   7.8  169   97-285     9-195 (202)
 44 smart00382 AAA ATPases associa  98.3 7.8E-06   2E-10   64.7   9.4  119  100-225     2-124 (148)
 45 TIGR03453 partition_RepA plasm  98.3 2.9E-05 7.5E-10   60.3  12.1   44   96-140   100-144 (387)
 46 PRK13768 GTPase; Provisional    98.3 0.00051 1.3E-08   50.8  18.5  117  100-225     2-140 (253)
 47 pfam03308 ArgK ArgK protein. T  98.3 4.2E-05 1.1E-09   59.2  12.8  141   97-252    26-179 (267)
 48 pfam09140 MipZ ATPase MipZ. Mi  98.3 5.4E-06 1.4E-10   65.9   8.1   86  110-197    11-112 (261)
 49 pfam00142 Fer4_NifH 4Fe-4S iro  98.3 1.5E-05 3.9E-10   62.5  10.4  166  102-275     2-207 (269)
 50 TIGR03371 cellulose_yhjQ cellu  98.3 9.1E-06 2.3E-10   64.2   9.2  159  102-270     3-200 (246)
 51 COG1192 Soj ATPases involved i  98.3 1.3E-05 3.2E-10   63.1   9.8  163  100-264     2-202 (259)
 52 PRK13705 plasmid-partitioning   98.2 1.1E-05 2.7E-10   63.7   8.9   58   80-140    88-147 (388)
 53 COG0003 ArsA Predicted ATPase   98.2 8.5E-06 2.2E-10   64.4   8.1   97  100-197     2-139 (322)
 54 cd03110 Fer4_NifH_child This p  98.2 2.3E-05 5.9E-10   61.1  10.2  149  106-270     6-174 (179)
 55 PRK08533 flagellar accessory p  98.2 7.8E-05   2E-09   57.1  12.7  192   76-288     7-217 (230)
 56 TIGR01007 eps_fam capsular exo  98.2 2.5E-05 6.3E-10   60.9  10.1  145  100-253    19-196 (207)
 57 COG1643 HrpA HrpA-like helicas  98.2 5.8E-05 1.5E-09   58.1  11.8  150   73-237    49-215 (845)
 58 pfam02881 SRP54_N SRP54-type p  98.2 2.8E-06 7.1E-11   68.1   5.0   56   23-82     22-77  (77)
 59 cd02040 NifH NifH gene encodes  98.2 8.8E-05 2.3E-09   56.7  12.3   39  101-140     2-40  (270)
 60 cd02036 MinD Bacterial cell di  98.1 4.3E-05 1.1E-09   59.1  10.3  139  103-270     2-146 (179)
 61 PRK10818 cell division inhibit  98.1 7.7E-05   2E-09   57.2  11.3  153  102-263     4-197 (270)
 62 TIGR00750 lao LAO/AO transport  98.1 7.4E-05 1.9E-09   57.3  11.2  147   92-253    30-195 (333)
 63 PRK13233 nifH nitrogenase redu  98.1 0.00013 3.3E-09   55.4  12.2  166  101-271     3-208 (275)
 64 PRK09361 radB DNA repair and r  98.1 0.00011 2.7E-09   56.1  11.6  106   81-195    11-119 (224)
 65 cd02032 Bchl_like This family   98.1 0.00016   4E-09   54.8  12.3  197  102-326     2-246 (267)
 66 PRK00090 bioD dithiobiotin syn  98.1 0.00032 8.2E-09   52.4  13.6  170  102-280     1-202 (223)
 67 PRK13231 nitrogenase reductase  98.1 0.00016   4E-09   54.8  11.9  162  102-271     4-199 (264)
 68 PRK11131 ATP-dependent RNA hel  98.1 8.7E-05 2.2E-09   56.7  10.6  132  101-237    90-238 (1295)
 69 PRK11537 putative GTP-binding   98.0 0.00029 7.3E-09   52.8  13.1  169  102-277     6-189 (317)
 70 KOG1805 consensus               98.0 5.7E-05 1.5E-09   58.1   8.7  168   20-196   607-809 (1100)
 71 PRK01077 cobyrinic acid a,c-di  98.0 0.00069 1.8E-08   49.9  13.9  173  102-297     5-193 (451)
 72 cd03112 CobW_like The function  97.9 0.00013 3.4E-09   55.3   9.8  143  102-251     2-157 (158)
 73 cd02042 ParA ParA and ParB of   97.9 1.8E-05 4.5E-10   62.0   5.2   47  109-199     9-55  (104)
 74 cd01983 Fer4_NifH The Fer4_Nif  97.9 2.9E-05 7.3E-10   60.4   6.1   69  102-224     1-69  (99)
 75 PRK11664 ATP-dependent RNA hel  97.9 0.00013 3.3E-09   55.4   9.3  131  102-241    22-169 (812)
 76 PHA02519 plasmid partition pro  97.9 0.00012   3E-09   55.7   9.0   58   80-140    88-147 (387)
 77 TIGR03574 selen_PSTK L-seryl-t  97.9 0.00027 6.8E-09   53.0  10.5  114  103-239     2-115 (249)
 78 pfam06414 Zeta_toxin Zeta toxi  97.9 0.00011 2.9E-09   55.9   8.6  106   96-207     8-114 (191)
 79 PRK06067 flagellar accessory p  97.9 0.00054 1.4E-08   50.7  12.0  106   80-193    19-137 (241)
 80 PRK04220 2-phosphoglycerate ki  97.9 0.00013 3.2E-09   55.5   8.5  108   34-152    22-135 (306)
 81 cd01394 radB RadB. The archaea  97.8 0.00074 1.9E-08   49.6  12.3  107   80-195     6-115 (218)
 82 cd02038 FleN-like FleN is a me  97.8 0.00046 1.2E-08   51.2  11.0  123  106-275     6-137 (139)
 83 PRK08116 hypothetical protein;  97.8  0.0003 7.5E-09   52.7  10.0  137   99-306   107-243 (262)
 84 pfam00009 GTP_EFTU Elongation   97.8 0.00013 3.2E-09   55.5   8.0  123  101-253     4-132 (185)
 85 cd02037 MRP-like MRP (Multiple  97.8 0.00053 1.4E-08   50.7  11.0  123  104-249     4-130 (169)
 86 PRK04328 hypothetical protein;  97.8  0.0018 4.7E-08   46.6  13.7   66   81-158    12-77  (250)
 87 COG3640 CooC CO dehydrogenase   97.8 0.00076 1.9E-08   49.5  11.7  170  102-296     2-230 (255)
 88 PRK11670 putative ATPase; Prov  97.8   0.002   5E-08   46.4  13.6  173   68-248    60-277 (369)
 89 PRK13232 nifH nitrogenase redu  97.8 0.00017 4.4E-09   54.5   8.2  146  102-253     3-187 (273)
 90 PRK09111 DNA polymerase III su  97.8  0.0067 1.7E-07   42.3  17.7  220   98-340    43-304 (600)
 91 cd01878 HflX HflX subfamily.    97.8  0.0004   1E-08   51.7   9.8  148   98-283    40-197 (204)
 92 pfam03796 DnaB_C DnaB-like hel  97.8 0.00067 1.7E-08   50.0  11.0  115  101-223    20-137 (186)
 93 PRK13230 nitrogenase reductase  97.8   0.001 2.6E-08   48.6  11.9   38  102-140     3-40  (292)
 94 PRK05291 trmE tRNA modificatio  97.7 0.00021 5.4E-09   53.8   7.8  163   76-288   194-364 (445)
 95 PRK13235 nifH nitrogenase redu  97.7 0.00031 7.8E-09   52.6   8.6  165  102-272     3-208 (274)
 96 KOG0923 consensus               97.7 0.00018 4.6E-09   54.3   7.4  124   98-225   278-420 (902)
 97 PRK04301 radA DNA repair and r  97.7  0.0055 1.4E-07   43.0  15.0  167   13-196    20-212 (318)
 98 PRK06647 DNA polymerase III su  97.7  0.0035   9E-08   44.5  14.0  219   97-339    35-287 (560)
 99 TIGR01420 pilT_fam twitching m  97.7 0.00011 2.7E-09   56.1   6.2  119  102-241   129-249 (350)
100 pfam06745 KaiC KaiC. This fami  97.7 0.00087 2.2E-08   49.1  10.7   68   81-159     7-74  (231)
101 pfam08433 KTI12 Chromatin asso  97.7 0.00075 1.9E-08   49.6  10.4  115  103-239     2-116 (266)
102 COG4240 Predicted kinase [Gene  97.7 0.00048 1.2E-08   51.1   9.3   76   74-150    25-100 (300)
103 TIGR03015 pepcterm_ATPase puta  97.7 0.00068 1.7E-08   49.9  10.1  144  101-252    44-194 (269)
104 PRK06645 DNA polymerase III su  97.7  0.0051 1.3E-07   43.2  14.5  226   97-343    40-307 (507)
105 pfam03029 ATP_bind_1 Conserved  97.7 0.00024 6.2E-09   53.3   7.5  130  105-253     1-167 (234)
106 cd01886 EF-G Elongation factor  97.7 0.00039 9.9E-09   51.8   8.6  214  103-345     2-241 (270)
107 PRK10463 hydrogenase nickel in  97.7 0.00044 1.1E-08   51.3   8.8  144   95-256    99-246 (290)
108 cd04170 EF-G_bact Elongation f  97.7 0.00047 1.2E-08   51.1   8.9  204  103-346     2-240 (268)
109 COG0455 flhG Antiactivator of   97.7  0.0015 3.9E-08   47.3  11.4  145  100-255     2-181 (262)
110 COG1618 Predicted nucleotide k  97.6 0.00032 8.2E-09   52.4   7.9  143  100-256     5-165 (179)
111 PRK05896 DNA polymerase III su  97.6   0.005 1.3E-07   43.3  14.0  219   97-340    35-288 (613)
112 pfam01583 APS_kinase Adenylyls  97.6 0.00088 2.3E-08   49.1  10.1   82   99-194     1-84  (157)
113 KOG0922 consensus               97.6 0.00038 9.6E-09   51.9   8.1  154  102-262    68-248 (674)
114 CHL00175 minD septum-site dete  97.6 0.00029 7.4E-09   52.7   7.5  152   93-253     6-189 (279)
115 PRK12323 DNA polymerase III su  97.6   0.011 2.7E-07   40.8  15.9  216   98-339    36-292 (721)
116 TIGR00345 arsA arsenite-activa  97.6 0.00025 6.5E-09   53.2   7.0  215  105-390     2-229 (330)
117 cd04168 TetM_like Tet(M)-like   97.6  0.0047 1.2E-07   43.6  13.4  196  103-344     2-207 (237)
118 PRK09302 circadian clock prote  97.6  0.0008 2.1E-08   49.4   9.5  111   99-213    23-157 (501)
119 TIGR03348 VI_IcmF type VI secr  97.6 0.00065 1.7E-08   50.1   9.0  117  102-254   113-257 (1169)
120 TIGR01967 DEAH_box_HrpA ATP-de  97.6 0.00017 4.2E-09   54.6   5.9  134  101-239    85-235 (1320)
121 cd00984 DnaB_C DnaB helicase C  97.6  0.0033 8.4E-08   44.7  12.1  115  101-223    14-131 (242)
122 KOG0925 consensus               97.6 0.00046 1.2E-08   51.2   7.6  131  101-240    63-210 (699)
123 PRK12402 replication factor C   97.5  0.0054 1.4E-07   43.0  13.1  109   97-211    34-151 (337)
124 cd00009 AAA The AAA+ (ATPases   97.5 0.00071 1.8E-08   49.8   8.5   79   99-195    18-96  (151)
125 KOG2878 consensus               97.5 0.00065 1.7E-08   50.1   8.2   80   78-157     8-90  (282)
126 COG2805 PilT Tfp pilus assembl  97.5 0.00056 1.4E-08   50.5   7.9  121  101-241   126-247 (353)
127 PRK09401 reverse gyrase; Revie  97.5 0.00054 1.4E-08   50.7   7.7   98  103-201    96-194 (1176)
128 cd01120 RecA-like_NTPases RecA  97.5  0.0011 2.7E-08   48.4   9.2   96  102-198     1-100 (165)
129 cd01895 EngA2 EngA2 subfamily.  97.5 0.00071 1.8E-08   49.8   8.3  147  100-283     2-167 (174)
130 PRK00784 cobyric acid synthase  97.5   0.006 1.5E-07   42.7  13.0  175  102-283     5-232 (492)
131 pfam08423 Rad51 Rad51. Rad51 i  97.5  0.0046 1.2E-07   43.6  12.3  174   42-253     6-199 (261)
132 pfam06564 YhjQ YhjQ protein. T  97.5 0.00026 6.7E-09   53.1   5.7   38  102-140     3-41  (244)
133 PTZ00035 Rad51; Provisional     97.5   0.016   4E-07   39.5  15.6  105   81-195   118-237 (350)
134 COG0489 Mrp ATPases involved i  97.5 0.00084 2.1E-08   49.2   8.2  148   99-254    56-233 (265)
135 cd04163 Era Era subfamily.  Er  97.5  0.0022 5.5E-08   46.1  10.3  145  102-283     5-161 (168)
136 COG0523 Putative GTPases (G3E   97.5  0.0006 1.5E-08   50.3   7.4  180  102-289     3-202 (323)
137 COG0467 RAD55 RecA-superfamily  97.5  0.0017 4.4E-08   46.9   9.6  145  101-251    24-194 (260)
138 PRK12337 2-phosphoglycerate ki  97.4  0.0012 3.2E-08   47.9   8.7  115   34-159   192-312 (492)
139 cd01122 GP4d_helicase GP4d_hel  97.4  0.0042 1.1E-07   43.9  11.4  144  101-250    31-190 (271)
140 PRK06305 DNA polymerase III su  97.4   0.018 4.6E-07   39.1  16.4  218   97-339    36-289 (462)
141 PRK06696 uridine kinase; Valid  97.4  0.0009 2.3E-08   49.0   7.7   51   95-146    21-71  (227)
142 cd01131 PilT Pilus retraction   97.4 0.00043 1.1E-08   51.4   6.0   80  102-191     3-82  (198)
143 cd01124 KaiC KaiC is a circadi  97.4  0.0011 2.8E-08   48.4   8.0   52  103-159     2-53  (187)
144 PRK05541 adenylylsulfate kinas  97.4 0.00026 6.6E-09   53.1   4.7  101   97-220     4-109 (176)
145 cd02027 APSK Adenosine 5'-phos  97.4  0.0021 5.3E-08   46.2   9.2   78  102-193     1-80  (149)
146 cd02034 CooC The accessory pro  97.4 0.00092 2.3E-08   48.9   7.3   85  103-193     2-96  (116)
147 PRK05595 replicative DNA helic  97.4   0.022 5.5E-07   38.5  17.1   60  101-164   202-263 (444)
148 PRK13896 cobyrinic acid a,c-di  97.4   0.013 3.4E-07   40.0  13.1  170  103-297     4-187 (432)
149 PRK03003 engA GTP-binding prot  97.4  0.0025 6.4E-08   45.6   9.3  163   77-278   189-367 (474)
150 pfam03266 DUF265 Protein of un  97.3  0.0014 3.6E-08   47.5   8.0  129  103-239     2-147 (168)
151 PRK12374 putative dithiobiotin  97.3   0.016 4.2E-07   39.4  13.4  179  103-293     5-214 (231)
152 smart00487 DEXDc DEAD-like hel  97.3  0.0028 7.1E-08   45.3   9.2  133  101-237    25-182 (201)
153 cd01891 TypA_BipA TypA (tyrosi  97.3  0.0048 1.2E-07   43.4  10.2  152  102-284     4-175 (194)
154 PRK13234 nifH nitrogenase redu  97.3   0.013 3.4E-07   40.1  12.4  208  101-327     5-252 (293)
155 KOG1532 consensus               97.3  0.0019 4.9E-08   46.5   8.0  201   96-340    15-242 (366)
156 PRK06835 DNA replication prote  97.3   0.011 2.9E-07   40.6  11.9  160   65-304   156-315 (330)
157 cd02028 UMPK_like Uridine mono  97.3 0.00037 9.4E-09   52.0   4.3   40  102-142     1-40  (179)
158 COG2074 2-phosphoglycerate kin  97.2   0.002   5E-08   46.4   7.7  108   34-153    20-133 (299)
159 PRK04040 adenylate kinase; Pro  97.2  0.0011 2.8E-08   48.3   6.4  170  100-295     2-184 (189)
160 KOG2743 consensus               97.2  0.0052 1.3E-07   43.2   9.9  148   98-254    56-225 (391)
161 cd04165 GTPBP1_like GTPBP1-lik  97.2  0.0015 3.9E-08   47.2   7.1   69  179-254    79-152 (224)
162 PRK07270 DNA polymerase III su  97.2   0.031 7.9E-07   37.3  22.5  304   97-432    34-389 (557)
163 CHL00181 cbbX CbbX; Provisiona  97.2   0.023 5.8E-07   38.3  12.9  124   23-195    10-134 (287)
164 PRK08770 DNA polymerase III su  97.2   0.003 7.7E-08   45.0   8.4   27   98-124    36-62  (663)
165 PRK06526 transposase; Provisio  97.2  0.0044 1.1E-07   43.7   9.2  143   36-209    40-185 (254)
166 PRK05537 bifunctional sulfate   97.2  0.0017 4.2E-08   47.0   7.0   38  392-429   425-463 (568)
167 PRK07003 DNA polymerase III su  97.2  0.0086 2.2E-07   41.5  10.6  214   98-337    36-285 (816)
168 PRK05648 DNA polymerase III su  97.2  0.0023 5.9E-08   45.9   7.7  218   98-339    36-287 (705)
169 PRK09302 circadian clock prote  97.2  0.0051 1.3E-07   43.2   9.4   90   99-193   265-366 (501)
170 PRK08233 hypothetical protein;  97.2  0.0036 9.1E-08   44.4   8.6   84   98-192     1-86  (182)
171 COG0464 SpoVK ATPases of the A  97.2   0.033 8.5E-07   37.0  14.7  200   97-341   273-484 (494)
172 COG1110 Reverse gyrase [DNA re  97.2  0.0025 6.3E-08   45.7   7.7   95  103-198   100-195 (1187)
173 PRK08691 DNA polymerase III su  97.2   0.034 8.8E-07   36.9  16.1  215   98-337    36-285 (704)
174 cd04164 trmE TrmE (MnmE, ThdF,  97.2  0.0036 9.1E-08   44.4   8.4  141  102-283     3-149 (157)
175 PRK05748 replicative DNA helic  97.2   0.035   9E-07   36.8  16.9  114  100-223   203-322 (448)
176 PRK10733 hflB ATP-dependent me  97.1   0.036 9.3E-07   36.7  14.7  210   80-340   165-392 (644)
177 pfam01695 IstB IstB-like ATP b  97.1  0.0057 1.5E-07   42.9   9.2   92   95-209    43-134 (178)
178 pfam00154 RecA recA bacterial   97.1   0.012 3.1E-07   40.4  10.8   98  101-205    53-152 (322)
179 PRK07263 consensus              97.1   0.039 9.8E-07   36.5  18.2  117  100-223   203-323 (453)
180 PRK05480 uridine kinase; Provi  97.1 0.00083 2.1E-08   49.3   4.7   41   97-140     3-43  (209)
181 PRK07133 DNA polymerase III su  97.1  0.0018 4.7E-08   46.6   6.4  216   97-340    37-287 (718)
182 PRK03846 adenylylsulfate kinas  97.1 0.00076   2E-08   49.5   4.4   47   96-143    20-66  (198)
183 cd01393 recA_like RecA is a  b  97.1  0.0094 2.4E-07   41.2   9.9  109   81-196     7-127 (226)
184 cd03216 ABC_Carb_Monos_I This   97.1  0.0036 9.3E-08   44.4   7.8  106   95-212    21-128 (163)
185 pfam01591 6PF2K 6-phosphofruct  97.1  0.0052 1.3E-07   43.2   8.5  177   98-296    11-218 (223)
186 cd01121 Sms Sms (bacterial rad  97.1  0.0098 2.5E-07   41.1   9.8  100   80-195    69-170 (372)
187 PRK13695 putative NTPase; Prov  97.1   0.004   1E-07   44.1   7.8  114  100-221     3-136 (174)
188 cd00983 recA RecA is a  bacter  97.1   0.011 2.9E-07   40.6  10.1   94  101-201    56-151 (325)
189 TIGR00073 hypB hydrogenase acc  97.0  0.0027 6.9E-08   45.3   6.9  143   95-257    29-181 (225)
190 PRK10865 protein disaggregatio  97.0   0.016 4.2E-07   39.4  10.9   28   98-126   198-225 (857)
191 COG2874 FlaH Predicted ATPases  97.0  0.0063 1.6E-07   42.6   8.8  194   74-289     9-223 (235)
192 COG0468 RecA RecA/RadA recombi  97.0  0.0098 2.5E-07   41.1   9.7   96  100-197    60-155 (279)
193 cd04171 SelB SelB subfamily.    97.0  0.0052 1.3E-07   43.2   8.2  143  102-284     2-159 (164)
194 cd04169 RF3 RF3 subfamily.  Pe  97.0 0.00075 1.9E-08   49.6   3.9  152  101-279     3-168 (267)
195 PRK08181 transposase; Validate  97.0   0.016 4.2E-07   39.4  10.7  143   37-208    48-192 (269)
196 cd00881 GTP_translation_factor  97.0  0.0032 8.2E-08   44.8   7.0  120  103-253     2-127 (189)
197 TIGR02533 type_II_gspE general  97.0 0.00018 4.6E-09   54.3   0.6  122   33-189   196-320 (495)
198 PRK08451 DNA polymerase III su  97.0  0.0098 2.5E-07   41.1   9.4  194   97-314    33-258 (523)
199 cd01894 EngA1 EngA1 subfamily.  97.0  0.0047 1.2E-07   43.5   7.8  119  105-260     2-125 (157)
200 cd02021 GntK Gluconate kinase   97.0   0.005 1.3E-07   43.3   7.9   82  102-193     1-82  (150)
201 cd04153 Arl5_Arl8 Arl5/Arl8 su  97.0  0.0036 9.2E-08   44.4   7.1  137   98-281    13-166 (174)
202 PRK09183 transposase/IS protei  97.0   0.008   2E-07   41.8   8.8  145   36-208    43-188 (258)
203 COG0563 Adk Adenylate kinase a  97.0  0.0041   1E-07   44.0   7.3   94  102-203     2-97  (178)
204 PRK10875 recD exonuclease V su  97.0  0.0028   7E-08   45.3   6.3  115  102-223   164-296 (607)
205 PRK06872 DNA polymerase III su  97.0   0.015 3.7E-07   39.8  10.0   27   98-124    36-62  (696)
206 COG2804 PulE Type II secretory  97.0  0.0017 4.3E-08   46.9   5.2   77   99-191   256-335 (500)
207 PRK11823 DNA repair protein Ra  96.9   0.013 3.4E-07   40.1   9.6  100   80-196    77-178 (454)
208 PRK00889 adenylylsulfate kinas  96.9  0.0015 3.9E-08   47.3   4.7   45   98-143     2-46  (175)
209 COG1066 Sms Predicted ATP-depe  96.9   0.017 4.2E-07   39.3  10.0  106   77-199    77-184 (456)
210 TIGR03346 chaperone_ClpB ATP-d  96.9   0.016 4.1E-07   39.5   9.9   27   99-126   194-220 (852)
211 TIGR01054 rgy reverse gyrase;   96.9  0.0034 8.6E-08   44.6   6.4   95  103-198   102-200 (1843)
212 PTZ00301 uridine kinase; Provi  96.9  0.0019 4.8E-08   46.6   5.1   44   99-142     2-46  (210)
213 cd01672 TMPK Thymidine monopho  96.9   0.028 7.1E-07   37.6  11.1   34  102-136     2-35  (200)
214 PRK13973 thymidylate kinase; P  96.9   0.022 5.7E-07   38.4  10.6  116  101-219     4-134 (216)
215 cd01887 IF2_eIF5B IF2/eIF5B (i  96.9   0.018 4.5E-07   39.1  10.1  139  102-283     2-158 (168)
216 PRK00313 lpxK tetraacyldisacch  96.9  0.0047 1.2E-07   43.5   7.0  196  107-333    60-279 (332)
217 PRK00698 tmk thymidylate kinas  96.9  0.0099 2.5E-07   41.1   8.6   48  102-151     5-52  (204)
218 PRK07952 DNA replication prote  96.9   0.011 2.8E-07   40.7   8.8   82   99-200    95-176 (242)
219 cd01876 YihA_EngB The YihA (En  96.9   0.013 3.2E-07   40.2   9.1  143  103-284     2-164 (170)
220 PRK09354 recA recombinase A; P  96.9   0.023 5.8E-07   38.3  10.3   94  101-201    61-156 (350)
221 PRK00093 engA GTP-binding prot  96.9  0.0066 1.7E-07   42.4   7.6  161   77-278   153-330 (438)
222 PRK07764 DNA polymerase III su  96.9   0.041 1.1E-06   36.3  11.6  217   98-337    35-287 (775)
223 PRK08853 DNA polymerase III su  96.8   0.063 1.6E-06   34.9  14.9  215   98-338    36-286 (717)
224 PRK04195 replication factor C   96.8   0.043 1.1E-06   36.2  11.6   87  101-212    41-130 (403)
225 cd01898 Obg Obg subfamily.  Th  96.8  0.0068 1.7E-07   42.3   7.5  144  102-283     2-163 (170)
226 pfam02421 FeoB_N Ferrous iron   96.8   0.003 7.7E-08   45.0   5.7  144  102-283     1-152 (188)
227 TIGR02928 TIGR02928 orc1/cdc6   96.8   0.029 7.4E-07   37.5  10.6  138   63-211    12-171 (383)
228 PRK12735 elongation factor Tu;  96.8  0.0038 9.7E-08   44.2   6.1  127   97-254     8-142 (396)
229 CHL00095 clpC Clp protease ATP  96.8   0.022 5.7E-07   38.3  10.0   53  101-153   201-265 (823)
230 COG1072 CoaA Panthothenate kin  96.8   0.025 6.3E-07   38.0  10.2  102   21-143    24-126 (283)
231 PRK13342 recombination factor   96.8  0.0072 1.8E-07   42.1   7.4  115   99-253    37-154 (417)
232 cd02023 UMPK Uridine monophosp  96.8  0.0016   4E-08   47.2   4.0   36  102-140     1-36  (198)
233 TIGR03345 VI_ClpV1 type VI sec  96.8   0.059 1.5E-06   35.1  12.1   24  103-126   211-234 (852)
234 cd01123 Rad51_DMC1_radA Rad51_  96.8   0.047 1.2E-06   35.9  11.6  104   80-193     6-125 (235)
235 COG0542 clpA ATP-binding subun  96.8   0.052 1.3E-06   35.6  11.7   22  104-125   195-216 (786)
236 PRK06674 DNA polymerase III su  96.8   0.069 1.8E-06   34.6  22.2  309   97-433    35-391 (563)
237 COG2894 MinD Septum formation   96.8  0.0074 1.9E-07   42.0   7.3   37  103-140     6-42  (272)
238 PRK09270 frcK putative fructos  96.8  0.0029 7.3E-08   45.2   5.2   46   96-141    30-76  (230)
239 TIGR02903 spore_lon_C ATP-depe  96.8  0.0019 4.9E-08   46.5   4.3   31   95-126   171-201 (616)
240 PRK13976 thymidylate kinase; P  96.8   0.025 6.5E-07   37.9  10.0  114  103-223     3-133 (202)
241 PRK05632 phosphate acetyltrans  96.8   0.071 1.8E-06   34.5  12.5   21  389-409   417-438 (702)
242 cd04160 Arfrp1 Arfrp1 subfamil  96.8  0.0046 1.2E-07   43.6   6.1   96  103-238     2-98  (167)
243 cd00046 DEXDc DEAD-like helica  96.7   0.015 3.9E-07   39.6   8.7   87  103-197     3-92  (144)
244 PRK07667 uridine kinase; Provi  96.7  0.0037 9.3E-08   44.3   5.5   44   97-141    11-54  (190)
245 PRK08082 consensus              96.7   0.074 1.9E-06   34.4  17.4   89  100-194   203-296 (453)
246 TIGR01968 minD_bact septum sit  96.7  0.0014 3.6E-08   47.5   3.3  135  107-265     9-198 (272)
247 cd01897 NOG NOG1 is a nucleola  96.7   0.032 8.2E-07   37.2  10.2  145  102-283     2-160 (168)
248 PRK11034 clpA ATP-dependent Cl  96.7   0.031 7.8E-07   37.3  10.0   50  102-151   209-270 (758)
249 PRK13633 cobalt transporter AT  96.7   0.028 7.2E-07   37.6   9.8  219   99-341    36-281 (281)
250 PRK00440 rfc replication facto  96.7  0.0075 1.9E-07   42.0   6.9   27   98-125    36-62  (318)
251 PRK01184 hypothetical protein;  96.7   0.021 5.4E-07   38.6   9.1   40  101-146     2-41  (183)
252 pfam00437 GSPII_E Type II/IV s  96.7  0.0011 2.8E-08   48.4   2.5   35  101-136   140-174 (283)
253 COG1797 CobB Cobyrinic acid a,  96.7   0.036 9.1E-07   36.8  10.3  172  103-297     3-191 (451)
254 cd00880 Era_like Era (E. coli   96.7  0.0049 1.3E-07   43.4   5.8  142  105-282     1-155 (163)
255 COG2403 Predicted GTPase [Gene  96.7   0.031 7.9E-07   37.3   9.8  147   85-256   114-284 (449)
256 PRK07471 DNA polymerase III su  96.7   0.026 6.7E-07   37.8   9.3   30   97-126    36-65  (363)
257 PRK13644 cbiO cobalt transport  96.6  0.0072 1.8E-07   42.1   6.4   56   92-150    22-77  (274)
258 cd01883 EF1_alpha Eukaryotic e  96.6  0.0035 8.9E-08   44.5   4.7  131  103-253     2-150 (219)
259 PRK09518 bifunctional cytidyla  96.6   0.023   6E-07   38.2   8.9  130  101-268   280-414 (714)
260 COG3523 IcmF Type VI protein s  96.6  0.0074 1.9E-07   42.0   6.3   69  186-254   176-270 (1188)
261 pfam09439 SRPRB Signal recogni  96.6  0.0035 8.8E-08   44.5   4.6  134   99-295     3-137 (181)
262 PRK13636 cbiO cobalt transport  96.6   0.091 2.3E-06   33.7  12.9  218   99-342    31-280 (285)
263 COG0132 BioD Dethiobiotin synt  96.6    0.09 2.3E-06   33.7  11.8  166  102-272     4-199 (223)
264 CHL00176 ftsH cell division pr  96.6   0.032 8.3E-07   37.1   9.5  201   80-340   190-417 (631)
265 PRK09112 DNA polymerase III su  96.5   0.027 6.8E-07   37.7   8.8   30   97-126    42-71  (352)
266 cd02025 PanK Pantothenate kina  96.5  0.0059 1.5E-07   42.7   5.5   43  102-144     1-45  (220)
267 COG3598 RepA RecA-family ATPas  96.5   0.027 6.8E-07   37.8   8.7   91  102-192    91-203 (402)
268 cd03268 ABC_BcrA_bacitracin_re  96.5   0.026 6.6E-07   37.8   8.6   44   98-142    24-67  (208)
269 cd04105 SR_beta Signal recogni  96.5  0.0074 1.9E-07   42.0   5.8  132  102-295     2-134 (203)
270 pfam00931 NB-ARC NB-ARC domain  96.5   0.037 9.4E-07   36.7   9.3   23   99-122    18-40  (285)
271 PRK10787 DNA-binding ATP-depen  96.5    0.11 2.7E-06   33.1  11.9  108   98-206   347-486 (784)
272 smart00178 SAR Sar1p-like memb  96.5   0.012 3.1E-07   40.3   6.7   24   98-121    15-38  (184)
273 COG0486 ThdF Predicted GTPase   96.5   0.029 7.5E-07   37.5   8.7  178   76-298   195-382 (454)
274 cd03109 DTBS Dethiobiotin synt  96.5   0.039 9.9E-07   36.5   9.2  115  109-271     8-130 (134)
275 PRK03992 proteasome-activating  96.5    0.04   1E-06   36.4   9.3  198   96-342   162-375 (390)
276 PRK10436 hypothetical protein;  96.5  0.0053 1.3E-07   43.1   4.8  208  101-334   216-452 (461)
277 PRK12317 elongation factor 1-a  96.5   0.011 2.8E-07   40.7   6.4  135   98-253     4-153 (426)
278 PRK13646 cbiO cobalt transport  96.5   0.037 9.4E-07   36.7   9.1  201   92-309    27-259 (286)
279 PRK13642 cbiO cobalt transport  96.4   0.021 5.3E-07   38.6   7.7  198   92-307    27-251 (277)
280 PRK07994 DNA polymerase III su  96.4    0.11 2.9E-06   33.0  12.9  219   98-339    36-287 (643)
281 PRK08939 primosomal protein Dn  96.4   0.022 5.6E-07   38.4   7.8   86  100-207   157-242 (306)
282 cd03116 MobB Molybdenum is an   96.4  0.0057 1.5E-07   42.9   4.8   72  100-197     1-72  (159)
283 pfam02223 Thymidylate_kin Thym  96.4   0.044 1.1E-06   36.1   9.2   28  106-134     2-29  (186)
284 TIGR03575 selen_PSTK_euk L-ser  96.4  0.0039   1E-07   44.1   3.8   43  104-146     3-45  (340)
285 PRK00089 era GTP-binding prote  96.4   0.049 1.2E-06   35.8   9.4  121   99-255     7-131 (296)
286 PRK00093 engA GTP-binding prot  96.4   0.025 6.2E-07   38.0   7.9  144  102-282     3-154 (438)
287 PRK00007 elongation factor G;   96.4   0.013 3.2E-07   40.3   6.4  136  100-267    10-157 (693)
288 KOG2749 consensus               96.4   0.079   2E-06   34.2  10.4  183   96-288   100-322 (415)
289 pfam03205 MobB Molybdopterin g  96.4  0.0059 1.5E-07   42.8   4.7   38  102-140     2-40  (122)
290 cd01428 ADK Adenylate kinase (  96.4   0.013 3.2E-07   40.2   6.4   91  103-205     2-98  (194)
291 TIGR02397 dnaX_nterm DNA polym  96.4   0.034 8.6E-07   37.0   8.5  203   72-340    20-289 (363)
292 COG0470 HolB ATPase involved i  96.4   0.027 6.8E-07   37.8   7.9  104   98-224    22-147 (325)
293 PRK12377 putative replication   96.4   0.058 1.5E-06   35.2   9.7   81   99-200   100-180 (248)
294 PRK13652 cbiO cobalt transport  96.4   0.025 6.4E-07   38.0   7.8  214   98-340    28-272 (277)
295 TIGR00313 cobQ cobyric acid sy  96.4   0.056 1.4E-06   35.3   9.5  164  103-271     1-218 (502)
296 pfam00350 Dynamin_N Dynamin fa  96.4   0.014 3.7E-07   39.8   6.5   66  183-250   100-168 (168)
297 pfam00004 AAA ATPase family as  96.3   0.041   1E-06   36.3   8.7   31  103-137     1-31  (131)
298 cd01129 PulE-GspE PulE/GspE Th  96.3  0.0081 2.1E-07   41.7   5.1  122  102-247    82-203 (264)
299 PRK13634 cbiO cobalt transport  96.3   0.048 1.2E-06   35.8   9.0  228   93-345    15-274 (276)
300 PRK10584 putative ABC transpor  96.3   0.025 6.3E-07   38.0   7.6   61   93-156    31-91  (228)
301 COG1763 MobB Molybdopterin-gua  96.3   0.013 3.4E-07   40.0   6.2  153  100-295     2-160 (161)
302 PRK06921 hypothetical protein;  96.3     0.1 2.6E-06   33.3  10.6  124  100-299   116-244 (265)
303 cd04155 Arl3 Arl3 subfamily.    96.3   0.012   3E-07   40.4   5.8   94   98-239    12-107 (173)
304 PRK13637 cbiO cobalt transport  96.3   0.036 9.1E-07   36.8   8.2  216   99-340    32-280 (287)
305 PRK00411 cdc6 cell division co  96.3    0.14 3.5E-06   32.4  14.3  136   62-210    26-167 (394)
306 TIGR03600 phage_DnaB phage rep  96.3    0.14 3.5E-06   32.3  20.1  115  100-223   194-313 (421)
307 pfam10662 PduV-EutP Ethanolami  96.3   0.023 5.8E-07   38.3   7.2  128  102-284     3-139 (143)
308 PRK10751 molybdopterin-guanine  96.3  0.0069 1.8E-07   42.2   4.5   68  102-195     4-71  (170)
309 cd01884 EF_Tu EF-Tu subfamily.  96.3   0.022 5.5E-07   38.5   7.0  123  102-253     4-131 (195)
310 PRK13650 cbiO cobalt transport  96.2   0.044 1.1E-06   36.1   8.5  215  101-340    31-272 (276)
311 PRK05636 replicative DNA helic  96.2    0.14 3.7E-06   32.2  16.2  114  100-223   267-385 (507)
312 cd03244 ABCC_MRP_domain2 Domai  96.2   0.076 1.9E-06   34.3   9.7   46   93-141    25-70  (221)
313 PTZ00141 elongation factor 1 a  96.2   0.012 3.1E-07   40.3   5.6  134   99-253     6-158 (443)
314 PRK00741 prfC peptide chain re  96.2    0.05 1.3E-06   35.7   8.7  152   99-278     9-175 (526)
315 PRK11247 ssuB aliphatic sulfon  96.2   0.058 1.5E-06   35.2   9.0   40   95-135    33-72  (257)
316 PRK00652 lpxK tetraacyldisacch  96.2   0.023   6E-07   38.2   7.0  172  107-309    58-251 (334)
317 PRK05563 DNA polymerase III su  96.2    0.15 3.7E-06   32.1  19.2  214   97-338    35-286 (541)
318 cd03291 ABCC_CFTR1 The CFTR su  96.2   0.052 1.3E-06   35.6   8.8  188   95-303    58-265 (282)
319 TIGR01188 drrA daunorubicin re  96.2  0.0029 7.4E-08   45.1   2.3   56   92-148    13-68  (343)
320 CHL00071 tufA elongation facto  96.2   0.015 3.7E-07   39.7   5.9  127   96-253     7-141 (409)
321 PRK09554 feoB ferrous iron tra  96.2    0.05 1.3E-06   35.7   8.6  146  100-283     3-160 (772)
322 KOG0734 consensus               96.2   0.069 1.8E-06   34.6   9.3  181   79-308   316-518 (752)
323 cd04167 Snu114p Snu114p subfam  96.2   0.041 1.1E-06   36.3   8.2  126  102-252     2-135 (213)
324 TIGR01448 recD_rel helicase, R  96.2   0.033 8.3E-07   37.1   7.6  197   99-308   364-578 (769)
325 COG1084 Predicted GTPase [Gene  96.2    0.13 3.2E-06   32.6  10.6  147   97-281   166-325 (346)
326 cd00267 ABC_ATPase ABC (ATP-bi  96.2   0.025 6.5E-07   37.9   7.0  101  100-212    25-126 (157)
327 TIGR03598 GTPase_YsxC ribosome  96.2    0.08   2E-06   34.1   9.6  121   97-257    16-146 (179)
328 PRK00049 elongation factor Tu;  96.2   0.024   6E-07   38.2   6.9  126   98-253     9-142 (397)
329 PRK12740 elongation factor G;   96.2   0.097 2.5E-06   33.5  10.0   64  182-252    58-124 (670)
330 PRK13185 chlL protochlorophyll  96.2  0.0089 2.3E-07   41.4   4.7  159  101-271     3-202 (269)
331 PRK07132 DNA polymerase III su  96.2   0.084 2.2E-06   33.9   9.6  202   97-343    17-225 (303)
332 PRK13632 cbiO cobalt transport  96.2   0.056 1.4E-06   35.3   8.7   43   98-141    34-76  (273)
333 pfam02606 LpxK Tetraacyldisacc  96.2   0.026 6.5E-07   37.9   7.0  199  108-336    45-267 (318)
334 PRK08694 consensus              96.2    0.16   4E-06   31.9  11.6  114  101-223   219-338 (468)
335 cd03228 ABCC_MRP_Like The MRP   96.1   0.051 1.3E-06   35.6   8.4   47   94-141    22-68  (171)
336 PRK08760 replicative DNA helic  96.1    0.16 4.1E-06   31.8  16.3  112  101-223   230-347 (476)
337 PRK07940 DNA polymerase III su  96.1    0.16 4.1E-06   31.8  18.9  137   97-242    36-176 (395)
338 COG1102 Cmk Cytidylate kinase   96.1   0.015 3.8E-07   39.7   5.6   76  102-195     2-82  (179)
339 PRK13635 cbiO cobalt transport  96.1   0.071 1.8E-06   34.5   9.0  214   99-341    32-276 (279)
340 PRK13649 cbiO cobalt transport  96.1   0.045 1.2E-06   36.0   8.0  197   98-309    31-258 (280)
341 COG4586 ABC-type uncharacteriz  96.1  0.0017 4.2E-08   47.0   0.6  173   92-281    42-238 (325)
342 TIGR03594 GTPase_EngA ribosome  96.1   0.039   1E-06   36.5   7.7  164   76-277   149-328 (429)
343 pfam00485 PRK Phosphoribulokin  96.1  0.0049 1.3E-07   43.4   3.0   37  102-139     1-37  (196)
344 KOG0920 consensus               96.1   0.063 1.6E-06   34.9   8.7  136  100-241   188-339 (924)
345 PRK11160 cysteine/glutathione   96.1   0.044 1.1E-06   36.1   7.9   32  390-421   423-455 (575)
346 PRK11176 lipid transporter ATP  96.1   0.092 2.4E-06   33.7   9.5   38  101-139   369-406 (581)
347 cd03266 ABC_NatA_sodium_export  96.1   0.055 1.4E-06   35.4   8.3   49   93-142    24-72  (218)
348 PRK13647 cbiO cobalt transport  96.1    0.06 1.5E-06   35.1   8.5  191   99-308    30-249 (273)
349 cd03247 ABCC_cytochrome_bd The  96.1    0.06 1.5E-06   35.1   8.5   48   94-142    22-69  (178)
350 PRK13974 thymidylate kinase; P  96.1   0.083 2.1E-06   34.0   9.2   27  102-128     5-31  (212)
351 PRK00091 miaA tRNA delta(2)-is  96.1   0.024   6E-07   38.2   6.3  156   99-274     3-180 (304)
352 pfam07724 AAA_2 AAA domain (Cd  96.0   0.065 1.7E-06   34.8   8.5   85  101-198     4-90  (168)
353 PRK00454 engB GTPase EngB; Rev  96.0    0.13 3.3E-06   32.5  10.1  146   97-284    22-189 (196)
354 PRK07429 phosphoribulokinase;   96.0   0.013 3.4E-07   40.1   5.0   67   97-166     5-95  (331)
355 COG0125 Tmk Thymidylate kinase  96.0   0.058 1.5E-06   35.2   8.2  122  100-224     3-139 (208)
356 TIGR01241 FtsH_fam ATP-depende  96.0    0.01 2.6E-07   40.9   4.4  198   83-340    75-300 (505)
357 PTZ00088 adenylate kinase 1; P  96.0   0.005 1.3E-07   43.3   2.8   41  102-147     2-42  (225)
358 cd03111 CpaE_like This protein  96.0   0.013 3.2E-07   40.2   4.8   88  102-238     1-91  (106)
359 PRK13640 cbiO cobalt transport  96.0   0.079   2E-06   34.2   8.9  221   98-341    32-280 (283)
360 pfam00270 DEAD DEAD/DEAH box h  96.0    0.14 3.5E-06   32.3  10.1   88  103-197    17-108 (167)
361 PRK03003 engA GTP-binding prot  96.0   0.036 9.2E-07   36.8   7.1  132   99-267    37-172 (474)
362 pfam05621 TniB Bacterial TniB   96.0    0.18 4.6E-06   31.4  10.7  200   79-308    46-266 (302)
363 COG0610 Type I site-specific r  96.0    0.18 4.7E-06   31.4  10.8   70   70-148   249-319 (962)
364 cd04166 CysN_ATPS CysN_ATPS su  96.0   0.015 3.9E-07   39.6   5.1  129  103-252     2-142 (208)
365 COG0529 CysC Adenylylsulfate k  96.0   0.013 3.3E-07   40.2   4.7   49   95-144    18-66  (197)
366 PRK13643 cbiO cobalt transport  96.0   0.014 3.7E-07   39.8   4.9  227   93-342    27-282 (288)
367 PRK05342 clpX ATP-dependent pr  96.0   0.055 1.4E-06   35.3   7.9  198   45-298    60-267 (411)
368 cd03238 ABC_UvrA The excision   96.0     0.1 2.6E-06   33.3   9.2   60   98-159    19-78  (176)
369 cd01890 LepA LepA subfamily.    96.0   0.047 1.2E-06   35.9   7.5  122  102-252     2-131 (179)
370 cd03278 ABC_SMC_barmotin Barmo  95.9    0.11 2.9E-06   33.0   9.4   31   91-124    16-46  (197)
371 PRK00279 adk adenylate kinase;  95.9   0.043 1.1E-06   36.2   7.3   90  102-203     2-97  (215)
372 TIGR01005 eps_transp_fam exopo  95.9    0.15 3.9E-06   32.0  10.1  147   98-256   560-743 (778)
373 TIGR00176 mobB molybdopterin-g  95.9  0.0088 2.2E-07   41.4   3.7  117  102-255     1-123 (165)
374 cd03289 ABCC_CFTR2 The CFTR su  95.9   0.089 2.3E-06   33.8   8.9   39   99-139    29-67  (275)
375 pfam00025 Arf ADP-ribosylation  95.9   0.014 3.5E-07   40.0   4.7  107   98-252    12-127 (174)
376 cd03255 ABC_MJ0796_Lo1CDE_FtsE  95.9   0.074 1.9E-06   34.4   8.4   63   94-157    24-86  (218)
377 PRK13645 cbiO cobalt transport  95.9    0.13 3.2E-06   32.6   9.6  224   93-342    32-289 (289)
378 TIGR03420 DnaA_homol_Hda DnaA   95.9   0.045 1.2E-06   36.0   7.3   79  101-210    39-117 (226)
379 TIGR01085 murE UDP-N-acetylmur  95.9   0.023 5.9E-07   38.2   5.8   70   74-146    60-131 (494)
380 PRK08058 DNA polymerase III su  95.9    0.16   4E-06   31.9  10.0  136   97-240    25-164 (329)
381 PRK08769 DNA polymerase III su  95.9    0.12 3.1E-06   32.7   9.4   43   76-126    10-52  (319)
382 COG1484 DnaC DNA replication p  95.9    0.14 3.5E-06   32.3   9.6   81   99-200   104-184 (254)
383 pfam05970 DUF889 PIF1 helicase  95.9   0.017 4.2E-07   39.4   4.9  110  107-222     1-120 (418)
384 PRK05564 DNA polymerase III su  95.9   0.033 8.3E-07   37.1   6.4   30   97-126    23-52  (313)
385 cd01879 FeoB Ferrous iron tran  95.9   0.012 2.9E-07   40.5   4.1  141  105-283     1-149 (158)
386 PRK13639 cbiO cobalt transport  95.9    0.21 5.4E-06   30.9  12.9  218   98-341    26-273 (275)
387 COG0572 Udk Uridine kinase [Nu  95.8   0.011 2.8E-07   40.7   3.9   42   98-142     6-47  (218)
388 cd03254 ABCC_Glucan_exporter_l  95.8    0.14 3.5E-06   32.3   9.5   41   98-139    27-67  (229)
389 cd03369 ABCC_NFT1 Domain 2 of   95.8    0.16 4.1E-06   31.8   9.8   41   99-140    33-73  (207)
390 KOG0926 consensus               95.8   0.061 1.6E-06   35.0   7.6  108  102-209   273-399 (1172)
391 CHL00072 chlL photochlorophyll  95.8   0.014 3.6E-07   39.8   4.4  158  102-271     2-200 (271)
392 PRK06762 hypothetical protein;  95.8   0.035 8.9E-07   36.9   6.3   93  100-210     2-94  (166)
393 PRK13657 cyclic beta-1,2-gluca  95.8    0.17 4.3E-06   31.6   9.8  128  101-236   362-511 (585)
394 cd01881 Obg_like The Obg-like   95.8   0.042 1.1E-06   36.3   6.7   91  183-275    43-159 (176)
395 cd03267 ABC_NatA_like Similar   95.8   0.012 3.1E-07   40.3   3.9   47   93-140    40-86  (236)
396 cd03245 ABCC_bacteriocin_expor  95.8   0.075 1.9E-06   34.3   7.9   44   94-138    24-67  (220)
397 PRK13641 cbiO cobalt transport  95.8   0.014 3.5E-07   40.0   4.1  229   93-344    28-284 (286)
398 PRK10790 putative multidrug tr  95.8    0.19 4.9E-06   31.2   9.9   41  389-430   422-462 (593)
399 PRK11629 lolD lipoprotein tran  95.8   0.051 1.3E-06   35.6   7.0   50   92-144    29-78  (233)
400 PRK12739 elongation factor G;   95.7    0.23 5.9E-06   30.6  14.3  136   99-267     9-156 (693)
401 cd03248 ABCC_TAP TAP, the Tran  95.7    0.16 4.1E-06   31.8   9.5   45   93-140    35-79  (226)
402 PRK06749 replicative DNA helic  95.7    0.23 5.9E-06   30.6  11.8  114  100-223   186-307 (428)
403 cd02033 BchX Chlorophyllide re  95.7   0.026 6.5E-07   37.9   5.4  167   95-271    26-235 (329)
404 COG1100 GTPase SAR1 and relate  95.7   0.028 7.1E-07   37.6   5.6   90  101-233     6-97  (219)
405 PRK10636 putative ABC transpor  95.7    0.13 3.3E-06   32.5   9.0   45  100-147   338-382 (638)
406 PRK01906 tetraacyldisaccharide  95.7   0.047 1.2E-06   35.9   6.7   95  108-225    66-177 (339)
407 cd01882 BMS1 Bms1.  Bms1 is an  95.7   0.057 1.5E-06   35.2   7.1   43   96-138    35-81  (225)
408 KOG2004 consensus               95.7    0.18 4.5E-06   31.5   9.6   75  100-190   438-512 (906)
409 PRK10789 putative multidrug tr  95.7    0.22 5.5E-06   30.8  10.0   37  102-139   343-379 (569)
410 pfam00406 ADK Adenylate kinase  95.7   0.023 5.9E-07   38.3   5.0  102  105-217     1-105 (186)
411 PRK02496 adk adenylate kinase;  95.7   0.042 1.1E-06   36.2   6.4   40  102-146     3-42  (185)
412 PRK05506 bifunctional sulfate   95.7    0.02 5.1E-07   38.7   4.7   47   96-143   439-485 (613)
413 PRK09518 bifunctional cytidyla  95.7    0.15 3.7E-06   32.2   9.1  161   77-275   430-605 (714)
414 cd03221 ABCF_EF-3 ABCF_EF-3  E  95.7   0.026 6.5E-07   37.9   5.2  103   93-221    21-123 (144)
415 PRK13766 Hef nuclease; Provisi  95.7    0.25 6.3E-06   30.4  12.1  120  103-238    32-158 (764)
416 cd00268 DEADc DEAD-box helicas  95.7    0.19 4.9E-06   31.2   9.6  127  103-236    39-195 (203)
417 TIGR03594 GTPase_EngA ribosome  95.7    0.19 4.8E-06   31.3   9.6  144  102-282     1-151 (429)
418 PRK07560 elongation factor EF-  95.6   0.098 2.5E-06   33.5   8.0  137   80-252     8-151 (730)
419 cd04159 Arl10_like Arl10-like   95.6   0.056 1.4E-06   35.3   6.8   86  103-234     2-87  (159)
420 PRK09860 putative alcohol dehy  95.6    0.11 2.9E-06   33.0   8.3   93   98-199     7-103 (383)
421 PRK05201 hslU ATP-dependent pr  95.6   0.056 1.4E-06   35.3   6.7   25   99-123    49-73  (442)
422 COG4555 NatA ABC-type Na+ tran  95.6   0.012 3.2E-07   40.3   3.4  167   93-279    21-212 (245)
423 PRK10624 L-1,2-propanediol oxi  95.6    0.11 2.7E-06   33.2   8.1   85  110-198    13-100 (381)
424 cd00878 Arf_Arl Arf (ADP-ribos  95.6   0.034 8.7E-07   36.9   5.6  132  103-281     2-150 (158)
425 PRK12736 elongation factor Tu;  95.6  0.0043 1.1E-07   43.8   0.9  130   96-254     7-142 (394)
426 PRK11701 phnK phosphonates tra  95.6    0.11 2.7E-06   33.1   8.1   53   92-147    26-83  (258)
427 cd03222 ABC_RNaseL_inhibitor T  95.6   0.041   1E-06   36.3   5.9   89  101-209    26-114 (177)
428 cd01130 VirB11-like_ATPase Typ  95.6   0.016 4.1E-07   39.4   3.8   78  102-190    27-107 (186)
429 pfam03215 Rad17 Rad17 cell cyc  95.5   0.037 9.4E-07   36.7   5.6   49   76-132    29-79  (490)
430 cd04157 Arl6 Arl6 subfamily.    95.5   0.022 5.5E-07   38.5   4.4   79  103-225     2-80  (162)
431 cd03252 ABCC_Hemolysin The ABC  95.5    0.14 3.6E-06   32.3   8.5   43   98-141    26-68  (237)
432 cd04150 Arf1_5_like Arf1-Arf5-  95.5   0.021 5.4E-07   38.5   4.3  102  102-251     2-112 (159)
433 cd03240 ABC_Rad50 The catalyti  95.5   0.013 3.4E-07   40.1   3.2   30   91-123    16-45  (204)
434 cd03257 ABC_NikE_OppD_transpor  95.5   0.038 9.6E-07   36.6   5.5   62   94-157    25-86  (228)
435 COG1061 SSL2 DNA or RNA helica  95.5    0.19 4.8E-06   31.3   9.1   90  101-197    56-160 (442)
436 cd01889 SelB_euk SelB subfamil  95.5   0.028 7.2E-07   37.6   4.9  125  103-252     3-132 (192)
437 PRK05917 DNA polymerase III su  95.5    0.28 7.2E-06   29.9  14.7   30   97-126    16-45  (290)
438 cd04154 Arl2 Arl2 subfamily.    95.5   0.026 6.8E-07   37.8   4.7  135   99-281    13-165 (173)
439 COG0466 Lon ATP-dependent Lon   95.5    0.29 7.3E-06   29.9  12.9  107   99-206   349-488 (782)
440 PRK11545 gntK gluconate kinase  95.5    0.02   5E-07   38.8   4.0   53   96-159     4-57  (177)
441 cd03225 ABC_cobalt_CbiO_domain  95.4   0.052 1.3E-06   35.5   6.1   41   99-140    26-66  (211)
442 TIGR00382 clpX ATP-dependent C  95.4    0.01 2.6E-07   40.9   2.4  240  101-446   153-419 (452)
443 COG1474 CDC6 Cdc6-related prot  95.4    0.19 4.8E-06   31.3   8.9   97   98-199    40-139 (366)
444 PRK11448 hsdR type I restricti  95.4  0.0063 1.6E-07   42.5   1.3   93  101-196   437-555 (1126)
445 TIGR00631 uvrb excinuclease AB  95.4  0.0045 1.1E-07   43.7   0.5   81  100-195    30-142 (667)
446 cd03215 ABC_Carb_Monos_II This  95.4    0.07 1.8E-06   34.6   6.6   46   92-140    20-65  (182)
447 PRK10037 cell division protein  95.4    0.03 7.5E-07   37.4   4.7   39  101-140     2-41  (250)
448 PRK13651 cobalt transporter AT  95.4   0.039   1E-06   36.5   5.3  217   99-341    32-296 (304)
449 cd03246 ABCC_Protease_Secretio  95.4    0.17 4.2E-06   31.7   8.4   46   93-141    23-68  (173)
450 cd03265 ABC_DrrA DrrA is the A  95.4   0.043 1.1E-06   36.2   5.4   48   93-141    19-66  (220)
451 PRK07933 thymidylate kinase; V  95.3    0.26 6.7E-06   30.2   9.4   34  102-136     2-35  (213)
452 COG3854 SpoIIIAA ncharacterize  95.3    0.11 2.8E-06   33.1   7.3   99  101-213   138-241 (308)
453 PRK13585 1-(5-phosphoribosyl)-  95.3    0.21 5.5E-06   30.8   8.9  187  117-338    33-239 (240)
454 cd03230 ABC_DR_subfamily_A Thi  95.3   0.059 1.5E-06   35.1   6.0   46   95-141    21-66  (173)
455 cd03299 ABC_ModC_like Archeal   95.3   0.099 2.5E-06   33.4   7.1  189   92-299    19-234 (235)
456 pfam09848 DUF2075 Uncharacteri  95.3   0.069 1.8E-06   34.6   6.3  114  101-223     2-123 (348)
457 PTZ00110 helicase; Provisional  95.3    0.25 6.4E-06   30.3   9.2  129  103-237   222-382 (602)
458 PRK10418 nikD nickel transport  95.3   0.076 1.9E-06   34.3   6.5   27   99-125    28-54  (254)
459 TIGR02640 gas_vesic_GvpN gas v  95.3   0.027 6.8E-07   37.8   4.1  166   97-319    20-208 (265)
460 COG2019 AdkA Archaeal adenylat  95.3   0.048 1.2E-06   35.8   5.5  174  100-295     4-183 (189)
461 KOG1051 consensus               95.3    0.33 8.4E-06   29.4  10.9  119   98-231   589-716 (898)
462 PTZ00336 elongation factor 1-a  95.3   0.034 8.6E-07   37.0   4.6  131  101-252     8-157 (449)
463 COG1245 Predicted ATPase, RNas  95.3    0.12 3.1E-06   32.7   7.5   24  101-124   101-124 (591)
464 PHA00729 NTP-binding motif con  95.2   0.046 1.2E-06   36.0   5.3   97   98-213    15-116 (228)
465 PRK13648 cbiO cobalt transport  95.2    0.17 4.4E-06   31.6   8.2   39  100-139    35-73  (269)
466 pfam00071 Ras Ras family. Incl  95.2   0.043 1.1E-06   36.2   5.1  108  103-252     2-116 (162)
467 cd03249 ABC_MTABC3_MDL1_MDL2 M  95.2    0.14 3.5E-06   32.3   7.7   45   93-140    24-68  (238)
468 TIGR02538 type_IV_pilB type IV  95.2    0.01 2.5E-07   41.0   1.8  115   98-243   323-445 (577)
469 cd03250 ABCC_MRP_domain1 Domai  95.2    0.34 8.6E-06   29.3   9.6   41   98-138    29-74  (204)
470 cd03223 ABCD_peroxisomal_ALDP   95.2    0.12 3.2E-06   32.7   7.4   31   99-129    26-56  (166)
471 COG1120 FepC ABC-type cobalami  95.2   0.015 3.9E-07   39.6   2.7   52   94-146    22-73  (258)
472 cd03292 ABC_FtsE_transporter F  95.2   0.096 2.4E-06   33.5   6.8   61   93-157    22-82  (214)
473 PRK10261 glutathione transport  95.2    0.07 1.8E-06   34.6   6.0   32   92-125    36-67  (623)
474 TIGR03410 urea_trans_UrtE urea  95.2    0.11 2.8E-06   33.1   7.0   51   98-149    24-74  (230)
475 cd03261 ABC_Org_Solvent_Resist  95.2    0.19 4.8E-06   31.3   8.2   62   92-157    20-81  (235)
476 cd03218 ABC_YhbG The ABC trans  95.1   0.016 4.1E-07   39.4   2.7   54   93-149    21-74  (232)
477 COG1131 CcmA ABC-type multidru  95.1   0.023 5.9E-07   38.2   3.4   43   98-141    29-71  (293)
478 PRK13545 tagH teichoic acids e  95.1    0.17 4.3E-06   31.6   7.8  163   95-278    45-221 (549)
479 cd03251 ABCC_MsbA MsbA is an e  95.1    0.14 3.6E-06   32.3   7.4   41   98-139    26-66  (234)
480 TIGR02237 recomb_radB DNA repa  95.1    0.19 4.9E-06   31.3   8.1   94  101-197    13-117 (223)
481 cd03233 ABC_PDR_domain1 The pl  95.1   0.053 1.3E-06   35.5   5.1  123   94-231    27-153 (202)
482 cd03294 ABC_Pro_Gly_Bertaine T  95.0    0.16 4.1E-06   31.8   7.6   63   92-157    44-106 (269)
483 PRK10851 sulfate/thiosulfate t  95.0    0.18 4.7E-06   31.4   7.9   42   99-141    27-68  (352)
484 PRK10419 nikE nickel transport  95.0    0.31 7.9E-06   29.7   9.0   81   92-177    32-113 (266)
485 PRK12339 2-phosphoglycerate ki  95.0   0.019 4.9E-07   38.8   2.9   46   99-153     2-47  (197)
486 cd03288 ABCC_SUR2 The SUR doma  95.0    0.17 4.4E-06   31.6   7.7   42  100-142    47-88  (257)
487 COG1160 Predicted GTPases [Gen  95.0    0.32 8.1E-06   29.5   9.1  166   76-279   154-337 (444)
488 pfam04851 ResIII Type III rest  95.0   0.041   1E-06   36.4   4.5   42  103-148    21-62  (103)
489 KOG1533 consensus               95.0   0.026 6.7E-07   37.8   3.5   38  101-139     3-40  (290)
490 pfam05729 NACHT NACHT domain.   95.0   0.025 6.3E-07   38.0   3.3   26  101-126     1-26  (165)
491 COG4088 Predicted nucleotide k  95.0    0.05 1.3E-06   35.7   4.9   37  102-139     3-39  (261)
492 TIGR03522 GldA_ABC_ATP gliding  95.0   0.018 4.6E-07   39.0   2.6   47   93-140    21-67  (301)
493 PRK05124 cysN sulfate adenylyl  95.0   0.046 1.2E-06   36.0   4.6  135   98-253    25-173 (475)
494 cd01987 USP_OKCHK USP domain i  95.0    0.36 9.1E-06   29.2   9.2   96  105-204     3-106 (124)
495 PRK13537 lipooligosaccharide t  95.0   0.017 4.2E-07   39.4   2.4   45   93-138    24-68  (304)
496 cd03227 ABC_Class2 ABC-type Cl  94.9    0.16   4E-06   31.9   7.3   25   99-123    20-44  (162)
497 PRK13409 putative ATPase RIL;   94.9   0.053 1.3E-06   35.5   4.9   33   97-129    96-128 (590)
498 TIGR00708 cobA cob(I)alamin ad  94.9    0.31 7.8E-06   29.7   8.8  135   98-235     4-167 (191)
499 PRK06761 hypothetical protein;  94.9   0.049 1.2E-06   35.8   4.7   41  102-143     4-45  (281)
500 KOG1969 consensus               94.9    0.08 2.1E-06   34.1   5.8   50  100-153   326-375 (877)

No 1  
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=100.00  E-value=0  Score=1281.49  Aligned_cols=428  Identities=54%  Similarity=0.851  Sum_probs=422.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             40377999999987428887898999999999999998524696999999999999983031112699899999999999
Q gi|254780711|r    2 FDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDE   81 (461)
Q Consensus         2 f~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~e   81 (461)
                      ||+|+++|+++|++|+++++|||+||+++++|||+||||||||+.||++|+++|++|+.|++|+++++|+|+++||||||
T Consensus         1 fe~Ls~~l~~~~~~L~~~~~itE~~i~~al~EiR~ALLeADVnl~VvK~Fi~~V~ekA~G~eV~~~~~P~Qq~iKIV~eE   80 (439)
T TIGR00959         1 FESLSERLQRIFKKLSGKGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE   80 (439)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEHHHHHH
T ss_conf             90157899999985117777588999999999999887731576899999998888752254412678020120224689


Q ss_pred             HHHHHCCC---CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH-HHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             99871877---4210002588418996234433346889999999-9861489507820542210047799998510347
Q gi|254780711|r   82 LVEVLGKE---SIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYH-LKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV  157 (461)
Q Consensus        82 L~~lLg~~---~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~-~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v  157 (461)
                      |+++||.+   +.+|.+..++|+||||||||||||||||||||+| +++++++||+|||||+|||||+|||+++++++||
T Consensus        81 L~~~LG~~~~E~~~L~~~~~~P~vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~gV  160 (439)
T TIGR00959        81 LVAILGGKGRESAELKLAEKRPTVILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQVGV  160 (439)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHCCC
T ss_conf             99851666732567555678683899731378857889999999999986389703403210347899999997675288


Q ss_pred             CCCC-CCCCCH---HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH
Q ss_conf             4222-332103---689999999999741588699833442221124689999998513851100031011122568888
Q gi|254780711|r  158 DTLE-VIPEQS---PEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA  233 (461)
Q Consensus       158 ~~~~-~~~~~d---p~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a  233 (461)
                      |||. .+.+++   |++||++|+++|+.++||+||||||||+|+|+.||+||..|+++++|+|||||+|||+||||+++|
T Consensus       161 pvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTAGRL~ID~~LM~EL~~iK~~~nP~EiLlVvDaM~GQdAvn~A  240 (439)
T TIGR00959       161 PVFAHLGKGQSPDDPVEIARQALEEAKENGFDVVIVDTAGRLQIDEELMEELAEIKEILNPDEILLVVDAMTGQDAVNTA  240 (439)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHCCHHHHHHHH
T ss_conf             71100478889887789999999999974897899726751255599999999998886887054122010216999999


Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             98876358440776411576633036777888478730261586723210013688998773586278899987421126
Q gi|254780711|r  234 RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNE  313 (461)
Q Consensus       234 ~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~  313 (461)
                      ++||+.+++||+|+||||||||||+|||+++.||+||+|||||||++|||+|||||+|+||||||||+||||||++++|+
T Consensus       241 ~~F~e~lgltG~vltK~DGDaRGGAALS~~~~tg~PIKFiG~GEK~~dLe~FhP~R~A~RILGMGDv~SLvEKA~~~~D~  320 (439)
T TIGR00959       241 KTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIEDLEPFHPDRMASRILGMGDVLSLVEKAQEVVDE  320 (439)
T ss_pred             HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCH
T ss_conf             86366001354788547566057899999999689618884177723312467478986323655223699999985188


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCC-CHHHHHHHHHHHHCCCHHHHCCCC
Q ss_conf             7899888653104637999999999985114889999987313442343231116-788888999997458987860841
Q gi|254780711|r  314 KQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSF-DDKTINHHIAIIASMTKEERANPS  392 (461)
Q Consensus       314 ~~~~~l~~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~-~e~~lk~~~aII~SMT~~Er~~P~  392 (461)
                      ++++++++|+.+|+||||||++||++|+|||||++||+||||++++.....+.+. +|++|+|++|||+||||+||+||+
T Consensus       321 ~~a~~~~~K~~~~~FdleDfl~Ql~~~~KMG~l~~L~~MiPG~g~~~~~~~~~~~l~e~~~~~~~AiI~SMT~~ER~NP~  400 (439)
T TIGR00959       321 EEAKKLAEKMLKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGMKPSLKDIDLLDEKQLKRIEAIISSMTPEERRNPK  400 (439)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHH
T ss_conf             99999999863058898999999999972279035888602202443357767677699999999877258877701925


Q ss_pred             CCC--HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             133--5789997232667989999999999999999998
Q gi|254780711|r  393 IIK--HSRKKRIAAGSGTNAAKINKLLKLHRQVAEMMHS  429 (461)
Q Consensus       393 ll~--~SR~~RIA~GSG~~v~eVn~Llk~f~~m~kmmk~  429 (461)
                      |||  +|||+|||+|||+|++|||+|||+|+||++|||+
T Consensus       401 iln~~~SRrkRIA~GSG~~v~dvNkLiK~f~qm~~~Mk~  439 (439)
T TIGR00959       401 ILNKDPSRRKRIAAGSGTTVQDVNKLIKRFEQMKKMMKK  439 (439)
T ss_pred             HHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             435798713789600799799999998629999998329


No 2  
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00  E-value=0  Score=1158.55  Aligned_cols=437  Identities=52%  Similarity=0.813  Sum_probs=425.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             94037799999998742888789899999999999999852469699999999999998303111269989999999999
Q gi|254780711|r    1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD   80 (461)
Q Consensus         1 Mf~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~   80 (461)
                      ||++|+++|++++++|++++++||++|+++++|||+|||+||||++||++|+++|++++++++++++++|+|++++|||+
T Consensus         1 m~e~L~~~l~~~~~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~e   80 (451)
T COG0541           1 MFESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYE   80 (451)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             94789999999999863778677999999999999999964446899999999999986146678889989999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             99987187742100025884189962344333468899999999861489507820542210047799998510347422
Q gi|254780711|r   81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL  160 (461)
Q Consensus        81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~  160 (461)
                      ||+++||+++.++.+..++|+||||||||||||||||||||+||++ +++||++||||||||||+|||+++|++++||||
T Consensus        81 ELv~llG~~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f  159 (451)
T COG0541          81 ELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF  159 (451)
T ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             9999848887665037899858999815679748689999999997-499458985056786899999999986098531


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf             23321036899999999997415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r  161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV  240 (461)
Q Consensus       161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~  240 (461)
                      +...+.||++|+++|+++|+.+.||+||||||||||+|++||+||++|+++++|+|++||+|||+||+|+++|++||+++
T Consensus       160 ~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l  239 (451)
T COG0541         160 GSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL  239 (451)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             67788997999999999999749988999688733030999999999985539874899876444567899999986626


Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             84407764115766330367778884787302615867232100136889987735862788999874211267899888
Q gi|254780711|r  241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTA  320 (461)
Q Consensus       241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~  320 (461)
                      ++||||+||+|||||||+|||++++||+||+||||||+++|||+|||+|||||||||||++||+|++++.+|++++++++
T Consensus       240 ~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~  319 (451)
T COG0541         240 GITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLA  319 (451)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98649997146787622888569987898599745887354777495889998537320999999999865699999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHH
Q ss_conf             65310463799999999998511488999998731344234323111678888899999745898786084113357899
Q gi|254780711|r  321 KKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKK  400 (461)
Q Consensus       321 ~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~  400 (461)
                      +|+.+|+|||+|||+|+++|+||||++++++||||++ +.....+.+.+|++++||+|||+|||++||+||++||+||++
T Consensus       320 ~kl~~g~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~-~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP~ii~~SR~r  398 (451)
T COG0541         320 EKLKKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGMG-MKDSDKDIELDEKKLKRIEAIIDSMTPEERENPDIINASRKR  398 (451)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCC-CCCCHHHHHCHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHH
T ss_conf             9998499789999999999873388889997588988-878523232119999879999970899886193202758888


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             972326679899999999999999999986068862017
Q gi|254780711|r  401 RIAAGSGTNAAKINKLLKLHRQVAEMMHSTQGLGGNALT  439 (461)
Q Consensus       401 RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~~~~~~~~~~  439 (461)
                      |||+|||++++|||+|||||++|++|||+|+++++...+
T Consensus       399 RIA~GSG~sv~dVn~Llkq~~~m~~mmk~~~~~~~~~~~  437 (451)
T COG0541         399 RIARGSGTSVQDVNKLLKQFKQMKKMMKKMSGGGGKGKM  437 (451)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             988148998899999999999999999997477870011


No 3  
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00  E-value=0  Score=1144.95  Aligned_cols=441  Identities=47%  Similarity=0.748  Sum_probs=427.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             94037799999998742888789899999999999999852469699999999999998303111269989999999999
Q gi|254780711|r    1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD   80 (461)
Q Consensus         1 Mf~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~   80 (461)
                      ||++|+++|+++|++|+++++|||++|+++|+||++|||+|||+++||++|+++|++++++++++++++|.++++++||+
T Consensus         1 Mf~~Ls~~l~~~~~~l~g~~~lte~~i~~~lrEIr~ALLeADV~~~vvk~~i~~vke~~~g~~v~~~l~p~q~i~kiv~~   80 (453)
T PRK10867          1 MFDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRN   80 (453)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             93788899999999714998778999999999999999975688799999999999996335135789889999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             99987187742100025884189962344333468899999999861489507820542210047799998510347422
Q gi|254780711|r   81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL  160 (461)
Q Consensus        81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~  160 (461)
                      ||+++||+...++++.+++|+||||||||||||||||||||+||+++++++|++||||||||||+|||++||++++||||
T Consensus        81 eL~~lLg~~~~~l~~~~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~  160 (453)
T PRK10867         81 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF  160 (453)
T ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             99998588876663378999699997468885185899999999973898379855887705899999999985198043


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf             23321036899999999997415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r  161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV  240 (461)
Q Consensus       161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~  240 (461)
                      ....++||++|+++|+++|+.++||+||||||||+|+|++||+||++|.++++|+|++||+||++||+|++||++|++++
T Consensus       161 ~~~~~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~F~~~~  240 (453)
T PRK10867        161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL  240 (453)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             67889988999999999999779999999787601210888999999987637871379743223566899999999855


Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             84407764115766330367778884787302615867232100136889987735862788999874211267899888
Q gi|254780711|r  241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTA  320 (461)
Q Consensus       241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~  320 (461)
                      ++||+|+||+|||||||+|||++++|++||+|||+||++||||+|||+|||+|||||||+++|+|++++.+|++++++++
T Consensus       241 ~~~gvIlTKlDgdarGG~alS~~~~t~~PI~FiG~GEk~ddle~F~p~r~asRILGmGDi~~Lvek~~~~~d~~~~~~~~  320 (453)
T PRK10867        241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLA  320 (453)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98707875046787613898999997869678866998245887684899998618987899999999875088999999


Q ss_pred             HHHHCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHH
Q ss_conf             653104-6379999999999851148899999873134423432311167888889999974589878608411335789
Q gi|254780711|r  321 KKIAKG-KFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRK  399 (461)
Q Consensus       321 ~k~~~g-~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~  399 (461)
                      +|+++| +|||+|||+|+++|+||||++++|+||||+++++... ..+.+++.++||+|||+|||++||+||++||+||+
T Consensus       321 ~k~~~g~~F~l~D~~~Q~~~i~kmG~l~~il~miPG~~~~~~~~-~~~~~~~~~~~~~aii~SMT~~Er~~p~il~~SR~  399 (453)
T PRK10867        321 SKLKKGDGFDLNDFLEQLKQMKNMGGMASLMGKLPGMGQLPDNV-KSQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRK  399 (453)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHH-HHCCCHHHHHHHHHHHHCCCHHHHHCCCCCCHHHH
T ss_conf             99870698569999999999974577999997588965334555-61321778988999996489998739501133599


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             9972326679899999999999999999986068862017999
Q gi|254780711|r  400 KRIAAGSGTNAAKINKLLKLHRQVAEMMHSTQGLGGNALTQQI  442 (461)
Q Consensus       400 ~RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~~~~~~~~~~~~~  442 (461)
                      +|||+|||++++|||+|||||++|++|||+|++++..++|+.|
T Consensus       400 ~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m~k~~~~~~m~~m  442 (453)
T PRK10867        400 RRIAAGSGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRGM  442 (453)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf             9987569989999999999999999999987036878998753


No 4  
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00  E-value=0  Score=1095.14  Aligned_cols=429  Identities=38%  Similarity=0.583  Sum_probs=407.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             94037799999998742888789899999999999999852469699999999999998303111269989999999999
Q gi|254780711|r    1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD   80 (461)
Q Consensus         1 Mf~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~   80 (461)
                      ||++|+++|+++|++|+++++|||++++++|+||+.|||+|||+++||++|+++|++++++++++++++|+++++++||+
T Consensus         2 mf~~Ls~~l~~~~~~l~g~~~l~E~~i~~~l~eIr~ALLeADV~~~vvk~f~~~vk~k~~g~~v~~~~~p~q~iikiv~~   81 (433)
T PRK00771          2 MLDKLGSSLKDALKKLAGATVIDKKTVKEVVKDIQRALLQADVNVKLVMNLSKEIERRALEEEPPKGMSKKEHIIKIVYE   81 (433)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             76889899999999861899889999999999999999965678799999999999997146245789989999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             99987187742100025884189962344333468899999999861489507820542210047799998510347422
Q gi|254780711|r   81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL  160 (461)
Q Consensus        81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~  160 (461)
                      ||+++||++..+.    .+|+||||||+|||||||||||||+||++ +|++|++||||||||||+|||++||++++||||
T Consensus        82 eL~~llg~~~~~~----~kP~Vim~vGlqGsGKTTT~aKLA~~~kk-~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~  156 (433)
T PRK00771         82 ELVKLLGEEAEIL----LKPQTILLVGLQGSGKTTTAAKLARYFQK-KGLKVGVICADTWRPGAYEQLKQLCEKINVPFY  156 (433)
T ss_pred             HHHHHHCCCCCCC----CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             9999849676566----89858999737889789999999999997-799467850678836899999999986388731


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf             23321036899999999997415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r  161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV  240 (461)
Q Consensus       161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~  240 (461)
                      +...++||++|+++|+++++  +||+||||||||+|+|++||+||++|.++++|+|++||+||++||+|++||++|++++
T Consensus       157 ~~~~~~dp~~i~~~a~~~~k--~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~F~~~~  234 (433)
T PRK00771        157 GDPKEKDAVKIVKEGLEKLK--KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKAFKEAV  234 (433)
T ss_pred             CCCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             78899999999999999845--6988999776521040999999999987757976899865442267899999998753


Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             84407764115766330367778884787302615867232100136889987735862788999874211267899888
Q gi|254780711|r  241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTA  320 (461)
Q Consensus       241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~  320 (461)
                      ++||+|+||+|||||||+|||++++||+||+|||+||++||||+|||+|||+|||||||+++|+|++++.+++++ ++..
T Consensus       235 ~i~gvIlTKlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~asRILGmGDi~sLvEk~~~~~~e~~-~~~~  313 (433)
T PRK00771        235 GIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFISRLLGMGDLKSLLEKAEEVMDEEA-EEDV  313 (433)
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHH
T ss_conf             887379972567887305421898878995688617872148866808899987089858999999998755999-9999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHH
Q ss_conf             65310463799999999998511488999998731344234323111678888899999745898786084113357899
Q gi|254780711|r  321 KKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKK  400 (461)
Q Consensus       321 ~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~  400 (461)
                      +++++|+|||+||++|+++|+||||++++++||||++...+. .+.+.++++++||+|||+|||++||+||++||+||++
T Consensus       314 ~k~~~g~F~l~Df~~Q~~~i~kmG~~~~il~miPg~~~~~~~-~~~~~~e~~~k~~~aII~SMT~~Er~~p~ii~~SR~~  392 (433)
T PRK00771        314 EAMMKGKFTLKDMYKQLEAMNKMGPLKQIMSMLPGGGGKLPD-EAIQVTEEKLKKYKVIMDSMTEEELENPEIINASRIK  392 (433)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHH
T ss_conf             987528856999999999998106899998638874210263-5553117888638479977999987394011658999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             97232667989999999999999999998606886201
Q gi|254780711|r  401 RIAAGSGTNAAKINKLLKLHRQVAEMMHSTQGLGGNAL  438 (461)
Q Consensus       401 RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~~~~~~~~~  438 (461)
                      |||+|||++++|||+|||||++|++|||+|+++++.++
T Consensus       393 RIA~GSG~~v~eVn~Llkqf~~~~kmmk~~~k~~~~g~  430 (433)
T PRK00771        393 RIARGSGVSPEEVRELLKYYKTMKNAMKGMKKGKMGGK  430 (433)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             97754998999999999999999999998568998888


No 5  
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=100.00  E-value=0  Score=1006.63  Aligned_cols=425  Identities=30%  Similarity=0.493  Sum_probs=400.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHCCCCCCCCCHHHHHHH
Q ss_conf             94037799999998742888789-8999999999999998524696999999999999---9830311126998999999
Q gi|254780711|r    1 MFDNLQERLGSIFQNITGKGSLS-ETDISNTLREIRRTFLEADVSLEVVQSFSKRVQE---KAKGEKILRSIQPGQMVIK   76 (461)
Q Consensus         1 Mf~~L~~~l~~~~~~l~~~~~l~-e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~---k~~~~~~~~~~~~~~~i~k   76 (461)
                      +|-.|+++|.+++.++.+.+++| |+.|+++|+||+.|||++|||+++|+++.++||.   .+.-++.+.++|.+..|++
T Consensus         1 VLA~LG~~l~~AL~~~~saTv~dse~vl~~~Lkei~~ALL~~dvn~klv~~l~~Nik~kid~~n~e~~~~g~nKRk~iq~   80 (453)
T TIGR01425         1 VLADLGSSLVSALRSMSSATVIDSEEVLNEMLKEICTALLESDVNVKLVRQLRENIKKKIDKINLEELASGLNKRKLIQK   80 (453)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             91010148999986012361104489999999999887511335267789888878874050351332103247899999


Q ss_pred             HHHHHHHHHHCCCCCC-----------------CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             9999999871877421-----------------00025884189962344333468899999999861489507820542
Q gi|254780711|r   77 IVHDELVEVLGKESIE-----------------LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV  139 (461)
Q Consensus        77 iv~~eL~~lLg~~~~~-----------------l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt  139 (461)
                      +|++||++|++|...+                 +.+.+++++||||||||||||||||.|||+||++ +|+||.||||||
T Consensus        81 ~vF~EL~~LvDp~~~APkPkklststktinGkk~~p~Kgk~~ViMfVGLQGaGKTTtctKLA~YYk~-rGfK~~lvCADT  159 (453)
T TIGR01425        81 AVFEELCNLVDPGVEAPKPKKLSTSTKTINGKKFTPKKGKSSVIMFVGLQGAGKTTTCTKLAYYYKR-RGFKPALVCADT  159 (453)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHC-CCCCEEEECCCC
T ss_conf             8999989760863234687533321101035034115688215888621488715668787777632-664325651775


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             21004779999851034742223321036899999999997415886998334422211246899999985138511000
Q gi|254780711|r  140 HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILL  219 (461)
Q Consensus       140 ~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~l  219 (461)
                      |||||+|||++.|.+.+||||+++.|.||+.||.+|++.|+++++|+|||||+|||..|+.|++|+..|.++++||.+++
T Consensus       160 FRAGAFdQLkqNA~kA~iPFYGsy~E~DPVkiA~EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iif  239 (453)
T TIGR01425       160 FRAGAFDQLKQNATKAKIPFYGSYLESDPVKIASEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIF  239 (453)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             42324899987476448971201048987078002011322127847998379873225888899876863349983699


Q ss_pred             CCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             31011122568888988763584407764115766330367778884787302615867232100136889987735862
Q gi|254780711|r  220 VADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGD  299 (461)
Q Consensus       220 V~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD  299 (461)
                      |+|+.+||.|..||++|++++.+++||+|||||+|+||+|||++++|+.||.||||||||||||+|+|+.|+||||||||
T Consensus       240 VMDGsIGQAA~~QAkAFK~~~~vGSvIiTKLDGHAkGGGALSAVAATKsPiiFIGTGEhv~d~E~F~~~~FvskLLGmGD  319 (453)
T TIGR01425       240 VMDGSIGQAAFSQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDDFEIFDAEPFVSKLLGMGD  319 (453)
T ss_pred             EECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf             80661667889999986300350038875156776762378898753597798137750276057899714775402021


Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHH
Q ss_conf             78899987421126789--9888653104637999999999985114889999987313442343231116788888999
Q gi|254780711|r  300 VVSLVEKAARNLNEKQA--ALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHI  377 (461)
Q Consensus       300 ~~~l~e~~~~~~d~~~~--~~l~~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~  377 (461)
                      +.+|++++++....++.  +.+-+||++|+|||+|||||+..+.||||+++|++||||++.-..+.....-...++|+|.
T Consensus       320 l~GL~~~v~~l~~~~~~~hk~li~~L~eG~fTlRd~~eQ~~NllKMGpl~~i~~MiPGl~~~~m~~g~~~e~~ak~K~~m  399 (453)
T TIGR01425       320 LKGLIDKVQDLKLDDEEKHKELIEKLKEGTFTLRDLYEQFQNLLKMGPLGNILSMIPGLSSELMSKGNEEESSAKIKKLM  399 (453)
T ss_pred             HHHHHHHHHHHCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHE
T ss_conf             88999999751421031079999998359610688999998763115444686504778852146677125666741022


Q ss_pred             HHHHCCCHHHHC--C-CCCC--CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             997458987860--8-4113--35789997232667989999999999999999
Q gi|254780711|r  378 AIIASMTKEERA--N-PSII--KHSRKKRIAAGSGTNAAKINKLLKLHRQVAEM  426 (461)
Q Consensus       378 aII~SMT~~Er~--~-P~ll--~~SR~~RIA~GSG~~v~eVn~Llk~f~~m~km  426 (461)
                      +|+||||.+|++  + |+++  ++||++|||||||+.+.||++||.||+.|++|
T Consensus       400 ~ImDSMt~~ELds~~G~k~~~~~pSRI~RvARGSG~~ireV~~lL~q~~~~~~m  453 (453)
T TIGR01425       400 TIMDSMTDKELDSTDGAKVFLKEPSRIVRVARGSGRDIREVEELLEQYKKFAQM  453 (453)
T ss_pred             EEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             643465761236799852202188715987515887401287899999986049


No 6  
>KOG0780 consensus
Probab=100.00  E-value=0  Score=944.18  Aligned_cols=431  Identities=35%  Similarity=0.561  Sum_probs=414.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             94037799999998742888789899999999999999852469699999999999998303111269989999999999
Q gi|254780711|r    1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD   80 (461)
Q Consensus         1 Mf~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~   80 (461)
                      ++..|+.++.++|+.+.+.+.+++..++.+|+||++|||+|||++++|+++.++|++.+..+++..+.++++.|.++|++
T Consensus         2 vla~lGrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~   81 (483)
T KOG0780           2 VLAELGRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFD   81 (483)
T ss_pred             CHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHH
T ss_conf             65776506899999852688620778999999999999852588889999999999874624202445788999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             99987187742100025884189962344333468899999999861489507820542210047799998510347422
Q gi|254780711|r   81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL  160 (461)
Q Consensus        81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~  160 (461)
                      ||+++++|+..++.+.+.+|+|||||||||+||||||+|||+||++ +|+||++||+|||||||+|||++||.+.+||||
T Consensus        82 eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y  160 (483)
T KOG0780          82 ELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAGAFDQLKQNATKARVPFY  160 (483)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHH-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf             9999718997646615689708999830578863008999999984-687245776022453068999987674077068


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf             23321036899999999997415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r  161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV  240 (461)
Q Consensus       161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~  240 (461)
                      +++.+.||+.|+.++++.|++++||+||+||+||||++.+||+||.++.++++|++++||+||+|||.|..||++|++.+
T Consensus       161 gsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v  240 (483)
T KOG0780         161 GSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV  240 (483)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             40366555899999999888639728998278730124899999999985159873899985620076799999887761


Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             84407764115766330367778884787302615867232100136889987735862788999874211267899888
Q gi|254780711|r  241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTA  320 (461)
Q Consensus       241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~  320 (461)
                      +++++|+|||||+||||+|||++++|+.||+||||||++||||+|+|++|++|||||||+.+|+|++++.. .+.++++.
T Consensus       241 dvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~  319 (483)
T KOG0780         241 DVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELV  319 (483)
T ss_pred             CCCEEEEEECCCCCCCCCEEEEHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHH
T ss_conf             54037997225677777345303540798799816755111577780779998715652899999999985-52089999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCC--CHHH
Q ss_conf             65310463799999999998511488999998731344234323111678888899999745898786084113--3578
Q gi|254780711|r  321 KKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSII--KHSR  398 (461)
Q Consensus       321 ~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll--~~SR  398 (461)
                      +++++|+|||+|||+|++.+.||||++++++|||||+.++...  ..-.+.++||+.++++|||++|+++|+++  ++||
T Consensus       320 ~kl~~gkFtlrd~y~Qfq~imkmGp~s~v~~MiPG~s~m~~~~--e~Es~~~~krm~~mmDsMt~~Elds~~~f~~~p~R  397 (483)
T KOG0780         320 EKLKQGKFTLRDFYDQFQNIMKMGPLSQVLGMIPGMSMMSKGN--EEESSAKLKRMMTMMDSMTDEELDSPELFVEEPSR  397 (483)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHH
T ss_conf             9988287019999999999985077989986387855588865--36799999999999972586433676323458357


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9997232667989999999999999999998606886
Q gi|254780711|r  399 KKRIAAGSGTNAAKINKLLKLHRQVAEMMHSTQGLGG  435 (461)
Q Consensus       399 ~~RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~~~~~~  435 (461)
                      +.|||||||++++||.+||.||+++..|||++++.+|
T Consensus       398 ~~RvArgSG~~v~eV~ell~q~~~~~~~~kk~~~~~G  434 (483)
T KOG0780         398 IMRVARGSGTSVQEVMELLAQYKKFAAMMKKIGGIKG  434 (483)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             6334506885199999999999999999998068888


No 7  
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).  This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=100.00  E-value=0  Score=659.84  Aligned_cols=268  Identities=37%  Similarity=0.561  Sum_probs=244.4

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC------CCCCCCCCCC
Q ss_conf             9999999999998524696999999999999983031112699899999999999998718774------2100025884
Q gi|254780711|r   27 ISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKES------IELDLNAPSP  100 (461)
Q Consensus        27 i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~------~~l~~~~~~p  100 (461)
                      .+++++|++..||+|||++++|.++++.+++++.+.++.......+.+.+.+.+.+.+.+.+..      .+..++.++|
T Consensus         3 de~~~EELE~~Ll~~Dv~~~~v~~i~~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~kp   82 (284)
T TIGR00064         3 DEDFFEELEEILLESDVGLEVVEKIIEELKKELVGKKVKDEEKLKEILKEALKEILKEILDKDTLLDLEQIEELPEEKKP   82 (284)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             03689989999998505189999999998875403557707899999999999987411232113344334430147897


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742223321-03689999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIAIRATQSA  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~~~a~~~a  179 (461)
                      +||||||+||+|||||+||||++|++ +|++|+|+|+|||||||+|||+.||+++||+++....+ +||++|+|+|+++|
T Consensus        83 ~Vil~VGVNG~GKTTTIaKLA~~l~~-~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPAaV~fDAi~~A  161 (284)
T TIGR00064        83 NVILFVGVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNADPAAVIFDAIQAA  161 (284)
T ss_pred             EEEEEEEEECCCHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             79999844088601028899999987-49908998275247999999999898838755407889887178999989999


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             7415886998334422211246899999985138-------511000310111225688889887635844077641157
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN-------PHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDG  252 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~-------p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~  252 (461)
                      +.++||+||||||||+|++.|||+||++|.++++       |||++||+||++||+|++||+.|++++++||+|||||||
T Consensus       162 k~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~Gqna~~QA~~F~eav~ltGiiLTKLDg  241 (284)
T TIGR00064       162 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDG  241 (284)
T ss_pred             HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             87499789973475454662039999999998732102578755754220222030899999986540688589963468


Q ss_pred             CCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             6633036777888478730261586723210013688998773
Q gi|254780711|r  253 DGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL  295 (461)
Q Consensus       253 ~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL  295 (461)
                      |||||++||+++..++||+|||+||++|||.||+|++|+.+|+
T Consensus       242 ~AKGG~~l~i~~~l~~Pv~~~G~GE~~dDL~~Fd~~~fv~~L~  284 (284)
T TIGR00064       242 TAKGGIILAIAYELKLPVKFIGVGEKIDDLAPFDADWFVEALF  284 (284)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHCC
T ss_conf             8037899988998579769985488733201479789987509


No 8  
>PRK10416 cell division protein FtsY; Provisional
Probab=100.00  E-value=0  Score=616.58  Aligned_cols=284  Identities=33%  Similarity=0.535  Sum_probs=263.3

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999998742888789899999999999999852469699999999999998303111269989999999999999871
Q gi|254780711|r    7 ERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVL   86 (461)
Q Consensus         7 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lL   86 (461)
                      ++|.+.|..|...++||++.    ++|++..||.|||++.++.++++++++++...++    ...+.+..++.++|.++|
T Consensus       210 ~~l~~~~~~lf~~kkiD~~~----~eeLEe~Li~aDvGv~tt~~ii~~l~~~~~~~~~----~~~~~l~~~l~~~~~~il  281 (499)
T PRK10416        210 ENLGSGFISLFRGKKIDDDL----FEELEEQLLIADVGVETTRKIITNLTEGASRKQL----RDAEALYGLLKEEMGEIL  281 (499)
T ss_pred             HHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHH
T ss_conf             99999999986689888899----9999999997205999999999999999986479----999999999999999987


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             87742100025884189962344333468899999999861489507820542210047799998510347422233210
Q gi|254780711|r   87 GKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ  166 (461)
Q Consensus        87 g~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~  166 (461)
                      .+...++.+..++|+||||||+|||||||||||||+||++ +|++|+|+|||||||||+|||++||++++||+|....++
T Consensus       282 ~~~~~~l~~~~~~P~VIl~vGvNG~GKTTTigKLA~~~~~-~gkkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~~~g~  360 (499)
T PRK10416        282 AKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGA  360 (499)
T ss_pred             HCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             3104466568999879999747878789899999999997-799537884066756899999998424573698368999


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC------CCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf             36899999999997415886998334422211246899999985138------511000310111225688889887635
Q gi|254780711|r  167 SPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN------PHEILLVADALTGQDAVHLARNFDKIV  240 (461)
Q Consensus       167 dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~------p~e~~lV~da~~Gq~a~~~a~~F~~~~  240 (461)
                      ||++|+++|+++|+.++||+||||||||+|++.+||+||++|.++++      |||++||+||++||+|++||+.|++++
T Consensus       361 Dpa~V~~dai~~a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tGQna~~qak~F~e~~  440 (499)
T PRK10416        361 DSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV  440 (499)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf             97999999999999729998998577643260999999999999997237899974899977876778999999984427


Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             84407764115766330367778884787302615867232100136889987735862
Q gi|254780711|r  241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGD  299 (461)
Q Consensus       241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD  299 (461)
                      ++||+|+||||||||||++||+++.+++||+|||+||++|||++|+|+.|+.+|++-.|
T Consensus       441 ~ltGiIlTKlDGtAKGG~~lsi~~~~~~PI~fiG~GE~idDL~~F~~~~Fv~aLf~~e~  499 (499)
T PRK10416        441 GLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED  499 (499)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHCCCC
T ss_conf             99759996567788525999999998839599867988220667798999999844799


No 9  
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00  E-value=0  Score=591.90  Aligned_cols=290  Identities=37%  Similarity=0.555  Sum_probs=255.8

Q ss_pred             CCHHHHHHHHHHHHHCC------CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHH
Q ss_conf             40377999999987428------8878989999999999999985246969999999999999-8303111269989999
Q gi|254780711|r    2 FDNLQERLGSIFQNITG------KGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEK-AKGEKILRSIQPGQMV   74 (461)
Q Consensus         2 f~~L~~~l~~~~~~l~~------~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k-~~~~~~~~~~~~~~~i   74 (461)
                      |+.|.+.|....+.+.+      ...+.+++.+++++|++..||+|||+++++..++++++++ ....+    +...+.+
T Consensus        34 ~~~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~----~~~~~~v  109 (340)
T COG0552          34 FERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKK----IKDEETV  109 (340)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC----CCCHHHH
T ss_conf             999988999999999998766301234430048899999999997024699999999999987510236----8988999


Q ss_pred             HHHHHHHHHHHHCCCCC----CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf             99999999987187742----10002588418996234433346889999999986148950782054221004779999
Q gi|254780711|r   75 IKIVHDELVEVLGKESI----ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRY  150 (461)
Q Consensus        75 ~kiv~~eL~~lLg~~~~----~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~  150 (461)
                      ..++.+.|..+|.+...    ......++|+||||||+||+|||||+||||+||+. +|++|+++||||||+||+|||++
T Consensus       110 ~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFRAaAiEQL~~  188 (340)
T COG0552         110 KEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFRAAAIEQLEV  188 (340)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHH
T ss_conf             99999999998465544443655235898679999934888637179999999997-89869998233478999999999


Q ss_pred             HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC------CCCCCCCCCHH
Q ss_conf             851034742223321036899999999997415886998334422211246899999985138------51100031011
Q gi|254780711|r  151 LGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN------PHEILLVADAL  224 (461)
Q Consensus       151 ~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~------p~e~~lV~da~  224 (461)
                      |++++||+++....|+||++|+|+|+++|+.++||+||||||||+|++.+||+||++|.++++      |||++||+||+
T Consensus       189 w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt  268 (340)
T COG0552         189 WGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT  268 (340)
T ss_pred             HHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf             99995992782599998089999999999976999999967554457366899999999984645689984289997756


Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             122568888988763584407764115766330367778884787302615867232100136889987735
Q gi|254780711|r  225 TGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILG  296 (461)
Q Consensus       225 ~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLG  296 (461)
                      +||+|++||+.|++++++||+|+||||||||||++||+++++++||+|||+||+++||.+|+|++|++.||+
T Consensus       269 tGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~  340 (340)
T COG0552         269 TGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG  340 (340)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHC
T ss_conf             475689999999875288669997024677762435088886999799857888443200699999998609


No 10 
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00  E-value=0  Score=547.54  Aligned_cols=264  Identities=21%  Similarity=0.373  Sum_probs=238.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             87898999999999999998524696999999999999983031112699899999999999998718774210002588
Q gi|254780711|r   20 GSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPS   99 (461)
Q Consensus        20 ~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~   99 (461)
                      .+++|++|++.++||+++||+|||++++|++|+++|++++.+.++.     .++++++++++|..+++.+.    ....+
T Consensus         4 ~~~~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~ik~k~~~~~~~-----~~~vi~~l~~~l~~~~~~~~----~~~~~   74 (270)
T PRK06731          4 KKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMI-----TEEVIEYILEDMSSHFNTEN----VFEKE   74 (270)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHHHHHCCCC----CCCCC
T ss_conf             2012650999999999999976998899999999999885045532-----99999999999987507665----46799


Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      |++||||||||||||||+||||+||++ ++++|++||||||||||+|||++||+++|+|+|..   .||.++......+.
T Consensus        75 ~~vI~lvG~~G~GKTTT~AKLA~~~~~-~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~---~~~~~~~~~~~~~~  150 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAMTRALTYFK  150 (270)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECC---CCHHHHHHHHHHHH
T ss_conf             818999888989889999999999986-79908999838888889999999999819953545---88789999999999


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf             7415886998334422211246899999985138511000310111-225688889887635844077641157663303
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-GQDAVHLARNFDKIVDLTGIILTRMDGDGRGGA  258 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~  258 (461)
                      ....+|+||||||||+|+|+++|+||.++.+.++|++++||+||++ ||++.++++.|+. ++++|+|+||+|||+|||+
T Consensus       151 ~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~~~~~f~~-~~i~gvIlTKlD~ta~gG~  229 (270)
T PRK06731        151 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGE  229 (270)
T ss_pred             HHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCH
T ss_conf             976999999979998714699999999986063898799998687776999999998077-9998899965358997729


Q ss_pred             HHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCC
Q ss_conf             677788847873026158672-321001368899877358
Q gi|254780711|r  259 ALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGM  297 (461)
Q Consensus       259 als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGm  297 (461)
                      |||+++.+++||+|+|+||++ +|||+|+|+++|+|||+-
T Consensus       230 als~~~~~~~PI~fig~Ge~VpeDi~~~~~~~la~riL~~  269 (270)
T PRK06731        230 LLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT  269 (270)
T ss_pred             HHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHC
T ss_conf             9999999885979994599970214137999999998304


No 11 
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00  E-value=0  Score=452.23  Aligned_cols=215  Identities=23%  Similarity=0.329  Sum_probs=188.7

Q ss_pred             HHHHHHHHCCC---CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             99999871877---421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r   79 HDELVEVLGKE---SIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI  155 (461)
Q Consensus        79 ~~eL~~lLg~~---~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~  155 (461)
                      .++|..+++..   ..++.+..++  ||||||+||||||||+||||++|++ +|++|++||||||||||+|||++||+++
T Consensus       184 ~~~~~~~~~~~~~~~~~~~l~~g~--VIaLVGvnGvGKTTTiAKLA~~l~~-~gkkV~LVAaDTFRaAAiEQLk~~g~rl  260 (407)
T PRK12726        184 TDWFVPYLSGKLAVEDSFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYADKL  260 (407)
T ss_pred             HHHHHHHHCCCCCCCCEEEECCCC--EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             689999753897703202303690--8999899989789999999999997-7991799970667788999999999997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHH
Q ss_conf             47422233210368999999999974158869983344222112468999999851385110003101112256888898
Q gi|254780711|r  156 QVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARN  235 (461)
Q Consensus       156 ~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~  235 (461)
                      +||||.   +.||.++.......+..+.+|+||||||||+|++.++|+||.++.++++|++++||+||+++++++.++..
T Consensus       261 gVpV~~---~~dpa~l~~av~~~a~~~~~DvVIIDTAGRl~~d~~Lm~EL~ki~~vi~P~~~lLV~dag~~~~~v~qa~~  337 (407)
T PRK12726        261 DVELIV---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP  337 (407)
T ss_pred             CCEEEE---ECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             964998---18889999999999862899989996999881349999999998733289669999367566999999998


Q ss_pred             HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCC
Q ss_conf             87635844077641157663303677788847873026158672-32100136889987735862
Q gi|254780711|r  236 FDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGD  299 (461)
Q Consensus       236 F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD  299 (461)
                      |...++++|+|+||||||||||++||++..+++||+|||+||+| |||.+|++++++.|+||-..
T Consensus       338 ~~~~v~ItGiILTKLDgtAKGG~aLSi~~~~~lPI~fIG~GEkIPEDi~~~~~~~l~~R~l~~~~  402 (407)
T PRK12726        338 KLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGTDR  402 (407)
T ss_pred             HHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCHH
T ss_conf             70479998799970147898539999999988897999479999701202898999999846316


No 12 
>KOG0781 consensus
Probab=100.00  E-value=0  Score=441.26  Aligned_cols=288  Identities=33%  Similarity=0.524  Sum_probs=268.5

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999998742888789899999999999999852469699999999999998303111269989999999999999871
Q gi|254780711|r    7 ERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVL   86 (461)
Q Consensus         7 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lL   86 (461)
                      ....+.|++|.|.+.|.|+|++..|+.++..|+.-+|+.+++..+|++|...+.|.++..-.+...-+...+.+.|++||
T Consensus       278 g~aFg~fkglvG~K~L~eeDL~pvL~km~ehLitKNVA~eiA~~LcesV~a~Legkkv~sfs~V~~Tvk~Al~daLvQIL  357 (587)
T KOG0781         278 GGAFGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQIL  357 (587)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             45899888631556444756699999999998762012899999999999985102104502778999999999999873


Q ss_pred             CCCCC-CC------CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC----
Q ss_conf             87742-10------00258841899623443334688999999998614895078205422100477999985103----
Q gi|254780711|r   87 GKESI-EL------DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI----  155 (461)
Q Consensus        87 g~~~~-~l------~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~----  155 (461)
                      .|..+ ++      ....++|+||.|||+||+||.|+.||+|+||.. ++.+|+++||||||+||+|||+++.+++    
T Consensus       358 TP~~sVDlLrdI~~ar~~krPYvi~fvGVNGVGKSTNLAKIayWLlq-NkfrVlIAACDTFRsGAvEQLrtHv~rl~~l~  436 (587)
T KOG0781         358 TPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQ-NKFRVLIAACDTFRSGAVEQLRTHVERLSALH  436 (587)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             88730669999999874689759999821476651329999999985-78369998624312447899999999998745


Q ss_pred             --CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH
Q ss_conf             --474222332103689999999999741588699833442221124689999998513851100031011122568888
Q gi|254780711|r  156 --QVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA  233 (461)
Q Consensus       156 --~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a  233 (461)
                        -|++|...+|+||+.||+.|+++|+.++|||||||||||.|+|..||.-|.++.++.+||.+++|-.|..|.|+++|+
T Consensus       437 ~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDvvLiDTAGRmhn~~~LM~~L~kl~~~n~pD~i~~VgEALVG~dsvdq~  516 (587)
T KOG0781         437 GTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQL  516 (587)
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCHHHHHH
T ss_conf             52048886104778289999999999866987899835443347806789999997447986599850555275589999


Q ss_pred             HHHHHHCC-------CCCEEEEECCC-CCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98876358-------44077641157-6633036777888478730261586723210013688998773
Q gi|254780711|r  234 RNFDKIVD-------LTGIILTRMDG-DGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL  295 (461)
Q Consensus       234 ~~F~~~~~-------i~giIlTKlD~-~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL  295 (461)
                      +.|+.++.       |+|+|+||+|. +-+.|+++|+++.|++||.|+|+||.+.||.-.+.+.+++.|+
T Consensus       517 ~~Fn~al~d~~~~r~iDgilltK~DTvdd~vG~~v~Mvy~t~~PIlFvG~GQtysDLr~l~vk~vV~tLm  586 (587)
T KOG0781         517 KKFNRALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATLM  586 (587)
T ss_pred             HHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHEECCCCEEEEECCCCCHHHHHCCHHHHHHHHH
T ss_conf             9999987448974423437887125065688878764200389769984586610376525899999863


No 13 
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00  E-value=0  Score=432.49  Aligned_cols=267  Identities=18%  Similarity=0.247  Sum_probs=220.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             99999999985246969999999999999830311126998999999999999987187742100025884189962344
Q gi|254780711|r   30 TLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQ  109 (461)
Q Consensus        30 ~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~  109 (461)
                      .+..+...|.+.|++..+.+++.+.++++....+    ++.-+.+.+.+.+.+.+.+..... + ....++.||+||||+
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~v~~~l~~~i~~~i~~~~~-~-~~~~k~~vi~lVGPT  183 (388)
T PRK12723        110 TILKIEDILRSNDFSESYIKDINEFIKREFSLSD----LDDYDKVRDSVIIYIAKTIKCSGS-I-IDNLKKRIFILVGPT  183 (388)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHCCCCC-C-CCCCCCEEEEEECCC
T ss_conf             5899999998675579999999999998722122----440879999999999976223666-5-335576289998998


Q ss_pred             CCCHHHHHHHHHHHHHHHCCC---CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf             333468899999999861489---50782054221004779999851034742223321036899999999997415886
Q gi|254780711|r  110 GSGKTTTTAKIAYHLKTLKKK---KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDA  186 (461)
Q Consensus       110 GsGKTTT~aKLA~~~~~~~~~---kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~  186 (461)
                      |||||||+||||++|..++++   +|++|++||||+||+|||++||+.+|||++......|..    .++..  .++||+
T Consensus       184 GvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~----~~l~~--~~~~D~  257 (388)
T PRK12723        184 GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLK----EEITQ--SKDFDL  257 (388)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHH----HHHHH--HCCCCE
T ss_conf             875787999999999986267677379998078758899999999999788069857889999----99997--249999


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHCCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf             99833442221124689999998513851-10003101112256-88889887635844077641157663303677788
Q gi|254780711|r  187 VILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADALTGQDA-VHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRT  264 (461)
Q Consensus       187 iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da~~Gq~a-~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~  264 (461)
                      ||||||||+|.|..+++||+++.+.++|+ +++||++|++++.. .++++.|. .++++++|+||||+++++|++||+..
T Consensus       258 IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f~-~~~~~~~I~TKlDEt~~~G~~l~~~~  336 (388)
T PRK12723        258 VLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQFS-PFSYKTVIFTKLDETTCVGNLISLIH  336 (388)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf             99958998856899999999999741898459999879899999999999842-79998499983227898669999999


Q ss_pred             HHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHC--CCCHHHHHHHHHH
Q ss_conf             847873026158672-32100136889987735--8627889998742
Q gi|254780711|r  265 VTGKPIKAIGTGEKI-NDLENFFPDRIANRILG--MGDVVSLVEKAAR  309 (461)
Q Consensus       265 ~~~~PI~fig~GE~~-~dle~F~p~~~~~riLG--mgD~~~l~e~~~~  309 (461)
                      .+++||.|+|+||++ ||||+|+|++|+++|||  .||..+.+++...
T Consensus       337 ~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~ilG~~~~~~~~~~~~~~~  384 (388)
T PRK12723        337 EMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDDAEFIRKLKS  384 (388)
T ss_pred             HHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             988886999389968302033899999999848714546999999850


No 14 
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=100.00  E-value=0  Score=445.60  Aligned_cols=196  Identities=51%  Similarity=0.778  Sum_probs=192.7

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      |+||+||||+|+|||||+||||+++++ +|++|++|++||||+||+|||++||+.+++|+|....++||+++++++++.+
T Consensus         1 P~vi~lvGptGvGKTTTiaKLAa~~~~-~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~   79 (196)
T pfam00448         1 PNVILLVGLQGSGKTTTIAKLAAYLKK-QGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKA   79 (196)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             969999899999889999999999997-7992899975877688999999999863981781487778789999999998


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf             74158869983344222112468999999851385110003101112256888898876358440776411576633036
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAA  259 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~a  259 (461)
                      +.+++|+||||||||+|.|.++|+||+++...++|++++||+||++||++.+++..|++.++++|+|+||||+++++|++
T Consensus        80 ~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~~~G~~  159 (196)
T pfam00448        80 KAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNALNQAKAFNEAVGITGVILTKLDGDAKGGAA  159 (196)
T ss_pred             HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
T ss_conf             84689999998999874767789999999852287302899856778213789998760047762688840578875299


Q ss_pred             HHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             7778884787302615867232100136889987735
Q gi|254780711|r  260 LSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILG  296 (461)
Q Consensus       260 ls~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLG  296 (461)
                      ||+...+++||.|+|+||++||||+|+|++|++||||
T Consensus       160 l~~~~~~~~Pi~~~t~Gq~v~Dl~~~~~~~~~~~lLG  196 (196)
T pfam00448       160 LSIAAETGKPIKFIGVGEKIDDLEPFDPERFVSRLLG  196 (196)
T ss_pred             HHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCC
T ss_conf             9899998969799967998120634799999998559


No 15 
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00  E-value=0  Score=405.38  Aligned_cols=263  Identities=21%  Similarity=0.266  Sum_probs=213.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEEEEC
Q ss_conf             9999999999852469699999999999998303111269989999999999999871877421000-258841899623
Q gi|254780711|r   29 NTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDL-NAPSPLVIMLVG  107 (461)
Q Consensus        29 ~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~-~~~~p~vIllvG  107 (461)
                      ..+..+...|++.+|+..+++++.+.+.++....+...    ...+.+-+.+.|.+.+......+.. ....+.||+|||
T Consensus       155 ~~~~~l~~~L~~~~~~~~~~~~i~~~l~~~~~~~d~~~----~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~kvi~lVG  230 (432)
T PRK12724        155 SPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGR----NHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVG  230 (432)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC----HHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEEC
T ss_conf             68999999998756688999999999987538100110----67899999999998714774011035777762999989


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             44333468899999999861489507820542210047799998510347422233210368999999999974158869
Q gi|254780711|r  108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAV  187 (461)
Q Consensus       108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~i  187 (461)
                      |+|||||||+||||++|...+++||+||++||||+||+|||++||+++|||++...   ||.+. .+++..   .++|+|
T Consensus       231 PTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~---~~~el-~~al~~---~~~DlI  303 (432)
T PRK12724        231 PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK---DIKKF-KETLAR---DGSELI  303 (432)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE---CHHHH-HHHHHH---CCCCEE
T ss_conf             99988899999999999997499279995266537799999999998599459951---89999-999985---699999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHCC---CCCCCCCCCHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf             98334422211246899999985138---5110003101112-2568888988763584407764115766330367778
Q gi|254780711|r  188 ILDTAGRNHINDSLMQEISEIKSLTN---PHEILLVADALTG-QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMR  263 (461)
Q Consensus       188 iiDTaGR~~~d~~lm~El~~i~~~~~---p~e~~lV~da~~G-q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~  263 (461)
                      |||||||+|.|...++||+.+.+++.   +.|++||++|++. ++..++++.|. .++++++|+||||+++..|++|++.
T Consensus       304 LIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~-~l~~~~lIfTKLDET~s~G~ilni~  382 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE-SLNYRRILLTKLDEADFLGSFLELA  382 (432)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf             992999897899999999999986366788517999978899899999999842-6999849997122779866999999


Q ss_pred             HHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf             8847873026158672-321001368899877358627889
Q gi|254780711|r  264 TVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGDVVSL  303 (461)
Q Consensus       264 ~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD~~~l  303 (461)
                      ..+++||.|+++||+| |||++.+|++++.-|||-.-+..|
T Consensus       383 ~~~~~PisYiT~GQ~VPdDI~~A~~~~la~lilg~~~~~~~  423 (432)
T PRK12724        383 DTYSKSFTYLSVGQEVPFDILNATKNLMAECVVFPEKIAEL  423 (432)
T ss_pred             HHHCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             99889869980899797173335999999997667989987


No 16 
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00  E-value=0  Score=391.74  Aligned_cols=253  Identities=25%  Similarity=0.375  Sum_probs=213.9

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             99999999999852469699999999999998303111269989999999999999871877421000258841899623
Q gi|254780711|r   28 SNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVG  107 (461)
Q Consensus        28 ~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvG  107 (461)
                      ......+...|++.+|+..++.++++.+.+..         ++.+ ....+.+.|.+.|.....   .......||+|||
T Consensus       151 ~p~~~~l~~~L~~~Gvs~~la~~l~~~~~~~~---------~~~~-~~~~l~~~L~~~l~~~~~---~~~~~~~vvalVG  217 (412)
T PRK05703        151 PPEFAKLYKRLKESGLSPEIADKLLKLLLEDM---------NPRE-AWRYLLELLANMLPTRVE---DILEQGGVVALVG  217 (412)
T ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---------CHHH-HHHHHHHHHHHHCCCCCC---CCCCCCCEEEEEC
T ss_conf             87899999999986999999999999866428---------9799-999999999975788876---6545673699988


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf             44333468899999999861489-50782054221004779999851034742223321036899999999997415886
Q gi|254780711|r  108 LQGSGKTTTTAKIAYHLKTLKKK-KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDA  186 (461)
Q Consensus       108 l~GsGKTTT~aKLA~~~~~~~~~-kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~  186 (461)
                      |+|||||||+||||+++..++++ +|+||++||||+||+|||++||+++|||++....   |.++ ..+++.  ..++|+
T Consensus       218 PTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~---~~~l-~~al~~--~~~~dl  291 (412)
T PRK05703        218 PTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYD---PKEL-AKALEQ--LANCDL  291 (412)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECC---HHHH-HHHHHH--HCCCCE
T ss_conf             8887567699999999999729981799983767777999999999971973798479---9999-999987--158997


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf             998334422211246899999985138511000310111-2256888898876358440776411576633036777888
Q gi|254780711|r  187 VILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-GQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTV  265 (461)
Q Consensus       187 iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~  265 (461)
                      ||||||||+|.|..+++||+.+.+...|.+++||++|++ .++..++++.|.. ++++++|+||||++++.|.+|++...
T Consensus       292 ILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~~-~~~~~lI~TKlDEt~~~G~il~~~~~  370 (412)
T PRK05703        292 ILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFSR-LPLDGLILTKLDETSSLGSILSLLIE  370 (412)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf             99968988978999999999998624887189997598998999999998467-99987999711289986299999999


Q ss_pred             HCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCCH
Q ss_conf             47873026158672-321001368899877358627
Q gi|254780711|r  266 TGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGDV  300 (461)
Q Consensus       266 ~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD~  300 (461)
                      +++||.|+++||+| |||++++|+++++++||-.|.
T Consensus       371 ~~lplsy~t~GQ~VPeDi~~a~~~~l~~~~l~g~~~  406 (412)
T PRK05703        371 SGLPISYLTDGQRVPDDIKVATPEELVRLALGGFLK  406 (412)
T ss_pred             HCCCEEEEECCCCCHHHHHCCCHHHHHHHHHCCCCC
T ss_conf             887969994699972434228999999998587555


No 17 
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=100.00  E-value=0  Score=390.07  Aligned_cols=173  Identities=57%  Similarity=0.849  Sum_probs=169.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
                      +||+||||+|||||||+||||++++. +|++|++|++||||+||+|||++||+++++|++....+.||.++++++++.++
T Consensus         1 ~Vi~lvGptGvGKTTTiaKLA~~~~~-~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T cd03115           1 TVILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99999899999889999999999997-69928999748875779999999999749859922775587999999999987


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
Q ss_conf             41588699833442221124689999998513851100031011122568888988763584407764115766330367
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAAL  260 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~al  260 (461)
                      .+++|+||||||||+|+|.++|+||+++.+.++|++++||+||++||++.++++.|++.++++++|+||+|+++++|++|
T Consensus        80 ~~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~~~G~~l  159 (173)
T cd03115          80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAAL  159 (173)
T ss_pred             HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHH
T ss_conf             56899899978887879999999999998644897215742465506589999998742799789997143899757999


Q ss_pred             HHHHHHCCCHHHEE
Q ss_conf             77888478730261
Q gi|254780711|r  261 SMRTVTGKPIKAIG  274 (461)
Q Consensus       261 s~~~~~~~PI~fig  274 (461)
                      |+.+.+++||.|||
T Consensus       160 s~~~~~~~Pi~fig  173 (173)
T cd03115         160 SIRAVTGKPIKFIG  173 (173)
T ss_pred             HHHHHHCCCEEEEC
T ss_conf             99999890908509


No 18 
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00  E-value=1.4e-45  Score=368.21  Aligned_cols=250  Identities=23%  Similarity=0.260  Sum_probs=203.3

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf             99999998524696999999999999983031112699899999999999998718774210002588418996234433
Q gi|254780711|r   32 REIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGS  111 (461)
Q Consensus        32 ~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~Gs  111 (461)
                      .++.+.|++++|+..+++++++++...         .++.+ ....+...|.+.|...... .....+..|++||||+||
T Consensus       119 ~~l~~~L~~~g~~~~la~~l~~~l~~~---------~~~~~-~~~~~~~~l~~~l~~~~~~-~~~~~~ggV~alVGPTGV  187 (404)
T PRK06995        119 GALFRHLLAAGFSAQLVRMLLENLPAG---------DDAQA-AMDWARSVLASNLPVLGSE-DALMERGGVFALVGPTGV  187 (404)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCCC---------CCHHH-HHHHHHHHHHHHCCCCCCC-CCHHCCCCEEEEECCCCC
T ss_conf             999999998799999999999847033---------89789-9999999999746666665-310114755898668887


Q ss_pred             CHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             346889999999986148-9507820542210047799998510347422233210368999999999974158869983
Q gi|254780711|r  112 GKTTTTAKIAYHLKTLKK-KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILD  190 (461)
Q Consensus       112 GKTTT~aKLA~~~~~~~~-~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiD  190 (461)
                      |||||+||||++|..++| +||++|++||||+||+|||++||+++|||++......|   . ..+++.  .+++|+||||
T Consensus       188 GKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~e---L-~~aL~~--l~~~dlILID  261 (404)
T PRK06995        188 GKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAAD---L-RLALAE--LRNKHIVLID  261 (404)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHH---H-HHHHHH--HCCCCEEEEE
T ss_conf             637589999999999838983799976875478999999999875955999599999---9-999997--0899999980


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCC
Q ss_conf             344222112468999999851385110003101112-2568888988763584407764115766330367778884787
Q gi|254780711|r  191 TAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKP  269 (461)
Q Consensus       191 TaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~P  269 (461)
                      ||||+|.|..+.+|+..+.....|.+++||++|++. ++..++++.|. .++++++|+||+|++...|.+|++...+++|
T Consensus       262 TaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~-~~~~~~~I~TKLDEt~~~G~iln~~~~~~lP  340 (404)
T PRK06995        262 TVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYR-GPGLAGCILTKLDEAASLGGALDTVIRHKLP  340 (404)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf             999897688899999999735788528999779899999999999844-6999839983040679723999999997898


Q ss_pred             HHHEECCCCC-CCCCCCCHHHHHHHHHCCCC
Q ss_conf             3026158672-32100136889987735862
Q gi|254780711|r  270 IKAIGTGEKI-NDLENFFPDRIANRILGMGD  299 (461)
Q Consensus       270 I~fig~GE~~-~dle~F~p~~~~~riLGmgD  299 (461)
                      |.|+++||+| |||++-+++..++|-+...-
T Consensus       341 lsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~~  371 (404)
T PRK06995        341 LHYVSNGQRVPEDLHVANAKFLLHRAFCAPR  371 (404)
T ss_pred             EEEECCCCCCCCCHHCCCHHHHHHHHHHCCC
T ss_conf             5998189958421210898999999862645


No 19 
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00  E-value=1.4e-45  Score=367.26  Aligned_cols=253  Identities=23%  Similarity=0.391  Sum_probs=205.0

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             99999999985246969999999999999830311126998999999999999987187742100025884189962344
Q gi|254780711|r   30 TLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQ  109 (461)
Q Consensus        30 ~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~  109 (461)
                      .+..+-+.|-..||..-....+.+.++-+.....   -++..+ +++.+.+.+-.-+.   .+..+.+ .-.+|.||||+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~---~~~~~~~-~~q~IALVGPT  250 (436)
T PRK11889        179 IIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT---MITEEE-VIKYILEDMRSHFN---TENVFEK-EVQTIALIGPT  250 (436)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC---CCCHHH-HHHHHHHHHHHHCC---HHHHHHH-HCEEEEEECCC
T ss_conf             9999999988555258999999998631121341---102999-99999999887403---1013364-17179998999


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf             333468899999999861489507820542210047799998510347422233210368999999999974-1588699
Q gi|254780711|r  110 GSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD-GGYDAVI  188 (461)
Q Consensus       110 GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~-~~~D~ii  188 (461)
                      |+|||||+||||++|.. ++++|++|++||||+||+|||++||+++++|+.....   |.+. ..++..+++ .+||+||
T Consensus       251 GVGKTTTIAKLAArf~~-~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~d---p~eL-~~AL~~lkdka~~DLIL  325 (436)
T PRK11889        251 GVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD---EAAM-TRALTYFKEEARVDYIL  325 (436)
T ss_pred             CCCHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECC---HHHH-HHHHHHHHHCCCCCEEE
T ss_conf             98889999999999861-6980899980663476999999999984994399688---8999-99999876336888899


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHC
Q ss_conf             83344222112468999999851385110003101112-25688889887635844077641157663303677788847
Q gi|254780711|r  189 LDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTG  267 (461)
Q Consensus       189 iDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~  267 (461)
                      ||||||++.|...++||..+.+...|++++||++|++. ++..++++.|.. ++++|+|+||||+++..|.+||+...++
T Consensus       326 IDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~-l~idglIfTKLDET~SlG~ILNv~~~s~  404 (436)
T PRK11889        326 IDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSS  404 (436)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCHHHHHHHHHHC
T ss_conf             929898846899999999998512777169999788998999999997257-9988289971325687037888998839


Q ss_pred             CCHHHEECCCCC-CCCCCCCHHHHHHHHHC
Q ss_conf             873026158672-32100136889987735
Q gi|254780711|r  268 KPIKAIGTGEKI-NDLENFFPDRIANRILG  296 (461)
Q Consensus       268 ~PI~fig~GE~~-~dle~F~p~~~~~riLG  296 (461)
                      +||.|+++||++ +||++++++++|..||-
T Consensus       405 LPIsYvTdGQ~VPEDIevA~ae~LAk~mLe  434 (436)
T PRK11889        405 APIVLMTDGQDVKKNIHIATAEHLAKQMLQ  434 (436)
T ss_pred             CCEEEECCCCCCCCCHHHCCHHHHHHHHHH
T ss_conf             987997899858753000699999999843


No 20 
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=100.00  E-value=3.5e-44  Score=357.27  Aligned_cols=219  Identities=28%  Similarity=0.393  Sum_probs=186.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf             99999999999871877421000258841899623443334688999999998-61489507820542210047799998
Q gi|254780711|r   73 MVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLK-TLKKKKILMASLDVHRPAAQEQLRYL  151 (461)
Q Consensus        73 ~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~-~~~~~kV~lv~~Dt~R~aA~eQL~~~  151 (461)
                      .......+-|..++..-...+  ...++.||+||||+|+|||||+||||++|. ..+.++|++|++||||+||+|||++|
T Consensus       178 ~~~~~~~~~l~~~~~~~~~~~--~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Y  255 (407)
T COG1419         178 EDLRYFSEKLRKLLLSLIENL--IVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTY  255 (407)
T ss_pred             CHHHHHHHHHHHHHHHHCCCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf             123217999999887644111--124685799989988758879999999997532576068997144115289999999


Q ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHH
Q ss_conf             51034742223321036899999999997415886998334422211246899999985138511000310111-22568
Q gi|254780711|r  152 GEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-GQDAV  230 (461)
Q Consensus       152 a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~  230 (461)
                      |+.+|+|+....+.   .+. .+++..+.  +||+||||||||+|.|...++||+.+..+..+.+++||++|++ .+|.-
T Consensus       256 a~im~vp~~vv~~~---~el-~~ai~~l~--~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlk  329 (407)
T COG1419         256 ADIMGVPLEVVYSP---KEL-AEAIEALR--DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLK  329 (407)
T ss_pred             HHHHCCCEEEECCH---HHH-HHHHHHHH--CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHH
T ss_conf             99869955996399---999-99999853--1888999689988337899999999970356621799984576468899


Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCCH
Q ss_conf             8889887635844077641157663303677788847873026158672-321001368899877358627
Q gi|254780711|r  231 HLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGDV  300 (461)
Q Consensus       231 ~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD~  300 (461)
                      ++.+.|. .++++|+|+||+|+++..|.++|+.+++++||.|+++||+| |||++-+|+.+++|++|.-..
T Consensus       330 ei~~~f~-~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~  399 (407)
T COG1419         330 EIIKQFS-LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFAN  399 (407)
T ss_pred             HHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCHHHHHHHHHCCCCC
T ss_conf             9999724-588661689713356763389999999689749971798787035535868899998612144


No 21 
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00  E-value=6.1e-41  Score=332.60  Aligned_cols=237  Identities=24%  Similarity=0.330  Sum_probs=187.9

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHH
Q ss_conf             99852469699999999999998303111269989999999999999871877421000258841899623443334688
Q gi|254780711|r   37 TFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTT  116 (461)
Q Consensus        37 aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT  116 (461)
                      -|+++.++..+++.+...+-         ...++.+ -...+...|.+-|--...+. +..++  |+.|||++|+|||||
T Consensus       298 rL~~~GfS~~Lar~L~~~lP---------~~~~~~~-a~~~ll~~La~~Lpv~~~d~-~~~gG--v~AlvGpTGvGKTTT  364 (557)
T PRK12727        298 LMDDYGFDAGLTRDVAMQIP---------ADTELHR-GRGLMLGLLSKRLPVAPVDP-LERGG--VIALVGPTGAGKTTT  364 (557)
T ss_pred             HHHHCCCCHHHHHHHHHHCC---------CCCCHHH-HHHHHHHHHHHHCCCCCCCH-HHCCC--EEEEECCCCCCCHHH
T ss_conf             99976699999999997483---------3278889-99999999996287777751-54076--478743777673117


Q ss_pred             HHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             9999999986148-950782054221004779999851034742223321036899999999997415886998334422
Q gi|254780711|r  117 TAKIAYHLKTLKK-KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN  195 (461)
Q Consensus       117 ~aKLA~~~~~~~~-~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~  195 (461)
                      +||||++|..++| ++|+||++||||+||+|||++|++++|||++......+-    .+++..  ..++|+||||||||.
T Consensus       365 ~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l----~~~l~~--l~~~~lvliDTaG~~  438 (557)
T PRK12727        365 IAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESL----LDLLER--LRDYKLVLIDTAGMG  438 (557)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHH----HHHHHH--HCCCCEEEEECCCCC
T ss_conf             99999999997399818999726640879999999999839757982899999----999998--369998999499988


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEE
Q ss_conf             211246899999985138511000310111-2256888898876358440776411576633036777888478730261
Q gi|254780711|r  196 HINDSLMQEISEIKSLTNPHEILLVADALT-GQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIG  274 (461)
Q Consensus       196 ~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig  274 (461)
                      |.|..+.+++..+. .....+.+||+.|++ +++..++++.|. .++++|+||||+|++++.|.+|++...+++|+.|++
T Consensus       439 ~rd~~~~~~~~~l~-~~~~~~~~Lvl~a~~~~~~l~~~~~~~~-~~~~~~~i~TKlDE~~~~G~~l~~~~~~~lp~~y~t  516 (557)
T PRK12727        439 QRDRALAAQLNWLR-AARQVTSLLVLPANAHFSDLDEVVRRFA-HAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT  516 (557)
T ss_pred             CCCHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEC
T ss_conf             46999999999875-1477635999968899899999999853-799874899614367870399999999689828975


Q ss_pred             CCCCC-CCCCCCCHHHHHHHH
Q ss_conf             58672-321001368899877
Q gi|254780711|r  275 TGEKI-NDLENFFPDRIANRI  294 (461)
Q Consensus       275 ~GE~~-~dle~F~p~~~~~ri  294 (461)
                      +||+| +||++-++..+++|.
T Consensus       517 ~GQ~VPeDi~~a~~~~Lv~Ra  537 (557)
T PRK12727        517 DGQRVPDDLHRANAASLVLRL  537 (557)
T ss_pred             CCCCCCCCHHHCCHHHHHHHH
T ss_conf             898285236438999999999


No 22 
>pfam02978 SRP_SPB Signal peptide binding domain.
Probab=99.97  E-value=4.3e-31  Score=257.45  Aligned_cols=100  Identities=47%  Similarity=0.725  Sum_probs=94.1

Q ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf             63799999999998511488999998731344234323111678888899999745898786084113357899972326
Q gi|254780711|r  327 KFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGS  406 (461)
Q Consensus       327 ~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~RIA~GS  406 (461)
                      +|||+|||+|+++++||||++++++||||+++.... .+.+.+++++++|++||+|||++||+||++||+||++|||+||
T Consensus         1 ~Ftl~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~-~~~~~~~~~lk~~~~Ii~SMT~~Er~~P~ll~~SR~~RIA~GS   79 (100)
T pfam02978         1 KFTLRDFLEQLQQIKKMGPLSKLLSMIPGMGKLPKL-AEQELDEKKLKRIEAIIDSMTPKERDNPEIINGSRKRRIAKGS   79 (100)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             988899999999999637899999778785402456-6530158999999999983799988682413867999998006


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             679899999999999999999
Q gi|254780711|r  407 GTNAAKINKLLKLHRQVAEMM  427 (461)
Q Consensus       407 G~~v~eVn~Llk~f~~m~kmm  427 (461)
                      |++++|||+||+||++|++||
T Consensus        80 G~~~~eVn~Llkqf~~m~kmm  100 (100)
T pfam02978        80 GTSVQEVNKLLKQFKQMKKMM  100 (100)
T ss_pred             CCCHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999998529


No 23 
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.95  E-value=1e-26  Score=224.08  Aligned_cols=149  Identities=28%  Similarity=0.311  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             99999999999852469699999999999998303111269989999999999999871877421000258841899623
Q gi|254780711|r   28 SNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVG  107 (461)
Q Consensus        28 ~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvG  107 (461)
                      ...+..+...|++.+|+..++.+|++.+++..         +. +.....+++.|.+.+.... ........+.||+|||
T Consensus       133 ~~~~~~l~~~L~~~gv~~~~~~~l~~~~~~~~---------~~-~~~~~~l~~~L~~~i~~~~-~~~~~~~~~~vi~lvG  201 (282)
T TIGR03499       133 DPEGAKLYERLEEAGVSEELARELLEKLPERA---------DA-ESAWRWLREALENMLPVKP-EEDEILEQGGVIALVG  201 (282)
T ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---------CH-HHHHHHHHHHHHHHCCCCC-CCCCCCCCCCEEEEEC
T ss_conf             86899999999986999999999999746029---------97-8999999999996477788-7655445672799977


Q ss_pred             CCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf             443334688999999998614-8950782054221004779999851034742223321036899999999997415886
Q gi|254780711|r  108 LQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDA  186 (461)
Q Consensus       108 l~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~  186 (461)
                      |+|||||||+||||++|..+. +++|+||++||||+||+|||++||+.+|||++......|   . .++++.+  .++|+
T Consensus       202 PTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~---l-~~~l~~~--~~~d~  275 (282)
T TIGR03499       202 PTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKE---L-AKALERL--RDKDL  275 (282)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHH---H-HHHHHHC--CCCCE
T ss_conf             8887578899999999999738996799980777678999999999995974899399999---9-9999865--79899


Q ss_pred             EEEECCC
Q ss_conf             9983344
Q gi|254780711|r  187 VILDTAG  193 (461)
Q Consensus       187 iiiDTaG  193 (461)
                      |||||||
T Consensus       276 IlIDTaG  282 (282)
T TIGR03499       276 ILIDTAG  282 (282)
T ss_pred             EEEECCC
T ss_conf             9981979


No 24 
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=98.79  E-value=2.4e-07  Score=76.22  Aligned_cols=148  Identities=22%  Similarity=0.302  Sum_probs=99.3

Q ss_pred             CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH---------------HHHH------C
Q ss_conf             5884189962-3443334688999999998614895078205422100477999---------------9851------0
Q gi|254780711|r   97 APSPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR---------------YLGE------Q  154 (461)
Q Consensus        97 ~~~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~---------------~~a~------~  154 (461)
                      ..++.||++. -..|-||||+++-||.-+.. -|+||+||-||..||.-..-+.               .|.+      .
T Consensus       528 ~~~~kvi~vTS~~pgEGKSt~a~nLA~~~A~-~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~  606 (726)
T PRK09841        528 ETENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGK  606 (726)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCC
T ss_conf             8888689997799999779999999999984-799599982887771077615999998779983899988993302798


Q ss_pred             CCCCCCCCC-CCCHHHHHHH-----HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH-HCCH
Q ss_conf             347422233-2103689999-----99999974158869983344222112468999999851385110003101-1122
Q gi|254780711|r  155 IQVDTLEVI-PEQSPEKIAI-----RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA-LTGQ  227 (461)
Q Consensus       155 ~~v~~~~~~-~~~dp~~i~~-----~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq  227 (461)
                      -++++.... ...+|+++.-     +-++.+ .+.||+|||||+=-+..-+.++     +...  .|-++||+.+ .|..
T Consensus       607 ~~ldvl~aG~~p~nP~elL~s~~~~~ll~~l-~~~yD~IIiDtPPvl~v~Da~~-----l~~~--~D~~l~Vvr~g~T~~  678 (726)
T PRK09841        607 GGFDVITRGQVPPNPSELLMRDRMRQLLEWA-NDHYDLVIVDTPPMLAVSDAAV-----VGRS--VGTSLLVARFGLNTA  678 (726)
T ss_pred             CCEEEEECCCCCCCHHHHHCCHHHHHHHHHH-HHCCCEEEEECCCCCCCCHHHH-----HHHH--CCEEEEEEECCCCCH
T ss_conf             9989982899997989995876999999999-8139999991999653415999-----9997--895999997996889


Q ss_pred             HHHHHH-HHHHH-HCCCCCEEEEECCCC
Q ss_conf             568888-98876-358440776411576
Q gi|254780711|r  228 DAVHLA-RNFDK-IVDLTGIILTRMDGD  253 (461)
Q Consensus       228 ~a~~~a-~~F~~-~~~i~giIlTKlD~~  253 (461)
                      +++..+ +.+.+ .+.+.|+|++.+|-.
T Consensus       679 ~~~~~a~~~l~~~~~~v~G~vlN~v~~~  706 (726)
T PRK09841        679 KEVSLSMQRLEQAGVNIKGAILNGVIKR  706 (726)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             9999999999978997589998288656


No 25 
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=98.70  E-value=1.2e-05  Score=63.43  Aligned_cols=142  Identities=19%  Similarity=0.319  Sum_probs=87.7

Q ss_pred             CCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH---------HHH------------HCCC
Q ss_conf             84189962-3443334688999999998614895078205422100477999---------985------------1034
Q gi|254780711|r   99 SPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR---------YLG------------EQIQ  156 (461)
Q Consensus        99 ~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~---------~~a------------~~~~  156 (461)
                      +++.+.++ .-.|.||||++|-||.-+.. .|+||++|-||..||.-..=+.         .++            ..-+
T Consensus       102 ~~~~LaItS~~pGEGKS~vAaNLA~~~Aq-~G~RvLLVDaDLRrP~lh~~f~l~~~~GLs~vL~g~~~l~~i~~~~~~~n  180 (274)
T TIGR03029       102 GRKALAVVSAKSGEGCSYIAANLAIVFSQ-LGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALEN  180 (274)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHCCCCCHHHEEECCCCCC
T ss_conf             88389996899999899999999999996-79919999588888447797599997687888459998899051589899


Q ss_pred             CCCCCCC-CCCHHHHHHH-----HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH-CCH-H
Q ss_conf             7422233-2103689999-----999999741588699833442221124689999998513851100031011-122-5
Q gi|254780711|r  157 VDTLEVI-PEQSPEKIAI-----RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL-TGQ-D  228 (461)
Q Consensus       157 v~~~~~~-~~~dp~~i~~-----~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~-~Gq-~  228 (461)
                      +.+.... ...+|.++.-     +-++.. .+.||+|||||+=-+...+.+     -+...  -|-++||+-+. |-. +
T Consensus       181 L~VLpaG~~ppnP~eLL~s~~~~~ll~~l-~~~yD~IIiDTPPvl~~sDA~-----ila~~--aDg~LlVvR~~~T~~~~  252 (274)
T TIGR03029       181 LSVLPAGAIPPNPQELLARPAFTDLLNKV-MGDYDVVIVDTPSAEHSSDAQ-----IVATR--ARGTLIVSRVNETRLHE  252 (274)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHHCCEEEEECCCCCCCCHHH-----HHHHH--CCEEEEEEECCCCCHHH
T ss_conf             78996999998979987358999999999-840999999389865543499-----99986--89799999689888999


Q ss_pred             HHHHHHHHHHH-CCCCCEEEEE
Q ss_conf             68888988763-5844077641
Q gi|254780711|r  229 AVHLARNFDKI-VDLTGIILTR  249 (461)
Q Consensus       229 a~~~a~~F~~~-~~i~giIlTK  249 (461)
                      ..+..+.+.+. +++-|+|+.|
T Consensus       253 l~~a~~~L~~~g~~VlGvVLNq  274 (274)
T TIGR03029       253 LTSLKEHLSGVGVRVVGAVLNQ  274 (274)
T ss_pred             HHHHHHHHHHCCCCEEEEEECC
T ss_conf             9999999997799668998487


No 26 
>PRK11519 tyrosine kinase; Provisional
Probab=98.69  E-value=9.9e-07  Score=71.55  Aligned_cols=149  Identities=19%  Similarity=0.243  Sum_probs=97.4

Q ss_pred             CCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH------------------HHH---H
Q ss_conf             25884189962-3443334688999999998614895078205422100477999------------------985---1
Q gi|254780711|r   96 NAPSPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR------------------YLG---E  153 (461)
Q Consensus        96 ~~~~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~------------------~~a---~  153 (461)
                      ...++.||++. -..|-||||+++-||.-+.. -|+||+||-||..||.-.+.+.                  ..-   .
T Consensus       522 ~~~~~~vi~vTS~~pgEGKSt~a~nLA~~~A~-~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~  600 (720)
T PRK11519        522 MQAQNNVLMMTGVSPSIGKTFVCANLAAVISQ-TNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTS  600 (720)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHCCCCC
T ss_conf             68887679997089999789999999999983-79919999387777016775399999985998079997899703579


Q ss_pred             CCCCCCCCCC-CCCHHHHHH-----HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH-HCC
Q ss_conf             0347422233-210368999-----999999974158869983344222112468999999851385110003101-112
Q gi|254780711|r  154 QIQVDTLEVI-PEQSPEKIA-----IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA-LTG  226 (461)
Q Consensus       154 ~~~v~~~~~~-~~~dp~~i~-----~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da-~~G  226 (461)
                      .-+++|.... ...+|.++.     .+-++.++ +.||+|||||+=-+..-+.+     -+...  .|-++||+-+ .|-
T Consensus       601 ~~~l~vl~~G~~~pnp~elL~s~~~~~ll~~l~-~~yD~IIiDtpPv~~v~Da~-----~la~~--aD~~l~Vvr~g~t~  672 (720)
T PRK11519        601 IANFDLIPRGQVPPNPSELLMSERFAELVAWAS-KNYDLVLIDTPPILAVTDAA-----IVGRH--VGTTLMVARYAVNT  672 (720)
T ss_pred             CCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHH-HHCCEEEEECCCCCCCHHHH-----HHHHH--CCEEEEEEECCCCC
T ss_conf             899899769999949899838759999999998-52999999399965235899-----99997--89799999899578


Q ss_pred             HHHHHHH-HHHHHH-CCCCCEEEEECCCC
Q ss_conf             2568888-988763-58440776411576
Q gi|254780711|r  227 QDAVHLA-RNFDKI-VDLTGIILTRMDGD  253 (461)
Q Consensus       227 q~a~~~a-~~F~~~-~~i~giIlTKlD~~  253 (461)
                      ..++..+ +.+.+. +.+.|+|+.++|-.
T Consensus       673 ~~~v~~a~~~l~~~~~~v~G~VlN~v~~~  701 (720)
T PRK11519        673 LKEVETSLSRFEQNGIPVKGVILNSIFRR  701 (720)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             99999999999968997489998897666


No 27 
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA).  This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life.  ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities.   To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates.  A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=98.68  E-value=4.8e-07  Score=73.97  Aligned_cols=148  Identities=24%  Similarity=0.301  Sum_probs=77.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH------------------------HHH---HHHHH-H
Q ss_conf             1899623443334688999999998614895078205422100------------------------477---99998-5
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA------------------------AQE---QLRYL-G  152 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a------------------------A~e---QL~~~-a  152 (461)
                      .+|+|.|=-|+||||+++-+|..+.. .|+||+++++|--..-                        .++   -++.| .
T Consensus         1 r~i~~~GKGGVGKTT~AaalA~~lA~-~G~kVLlvstDPahsLsd~f~~~~~~~~~~v~~~~nL~a~eid~~~~~~~~~~   79 (254)
T cd00550           1 RYIFFGGKGGVGKTTISAATAVRLAE-QGKKVLLVSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQ   79 (254)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHCCCCCCCCCEECCCCCCEEEEECHHHHHHHHHH
T ss_conf             98999689855489999999999996-89949999589864488984886678871103668845787288999999999


Q ss_pred             HC---CCCCCCC-----------CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-----HHHHHHHHHHHHHCC
Q ss_conf             10---3474222-----------3321036899999999997415886998334422211-----246899999985138
Q gi|254780711|r  153 EQ---IQVDTLE-----------VIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIN-----DSLMQEISEIKSLTN  213 (461)
Q Consensus       153 ~~---~~v~~~~-----------~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d-----~~lm~El~~i~~~~~  213 (461)
                      ..   +.-.+-.           ..++-|-+.....-++......||+|+||||--.|.=     -+.++.+.++  ..+
T Consensus        80 ~v~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~i~~~~~~~~yD~IViDtaPTGhtLrlL~lP~~l~~~~~~--L~d  157 (254)
T cd00550          80 EVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREI--LSD  157 (254)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCHHHHHHHHHH--CCC
T ss_conf             999988632255668888999863985899999999999976069988998899856799875156999999985--379


Q ss_pred             CCCC--CCCCCH--HCCHHHHHHHHHHHH-HCCCCCEEEEECC
Q ss_conf             5110--003101--112256888898876-3584407764115
Q gi|254780711|r  214 PHEI--LLVADA--LTGQDAVHLARNFDK-IVDLTGIILTRMD  251 (461)
Q Consensus       214 p~e~--~lV~da--~~Gq~a~~~a~~F~~-~~~i~giIlTKlD  251 (461)
                      |..+  ++|.-.  +.=.++......+.+ .++++++|+-++=
T Consensus       158 ~~~t~~~lV~~PE~~~v~Et~R~~~~L~~~~i~v~~vvvN~v~  200 (254)
T cd00550         158 PERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLL  200 (254)
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             5655899997787216999999999999779998979995880


No 28 
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=98.62  E-value=1.6e-06  Score=69.99  Aligned_cols=38  Identities=37%  Similarity=0.448  Sum_probs=35.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             189962344333468899999999861489507820542
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV  139 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt  139 (461)
                      .+|++.|--|+||||++|-+|.++.+ .|+||+++++|-
T Consensus         2 r~i~~~GKGGVGKTT~AaA~A~~~A~-~G~rvLlvStDP   39 (304)
T pfam02374         2 RWIFFGGKGGVGKTTVSCATAVRLSE-QGKKVLLVSTDP   39 (304)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCC
T ss_conf             19999579857489999999999995-899299994697


No 29 
>PHA02518 ParA-like protein; Provisional
Probab=98.58  E-value=8.3e-07  Score=72.17  Aligned_cols=152  Identities=19%  Similarity=0.244  Sum_probs=85.8

Q ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8996234-4333468899999999861489507820542210047799998510--347422233210368999999999
Q gi|254780711|r  102 VIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQ--IQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus       102 vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~--~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      ||.++.. =|+||||++.-||.+|.. .|++|+++-+|..+.+.     .|.+.  -+-|.+....- .+ . ....+..
T Consensus         2 IIav~n~KGGvGKTT~a~nLA~~la~-~G~~VlliD~DpQ~s~~-----~w~~~r~~~~~~~~~~~~-~~-~-~~~~l~~   72 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHA-DGHKVLLVDLDPQGSST-----DWAEAREEGEPLIPVVRM-GK-S-IRADLPK   72 (211)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCHH-----HHHHHCCCCCCCCCHHHC-CH-H-HHHHHHH
T ss_conf             89998089997499999999999997-89948999779996788-----999852268997401213-67-7-9999997


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-------HHCC-HHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             97415886998334422211246899999985138511000310-------1112-256888898876358440776411
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVAD-------ALTG-QDAVHLARNFDKIVDLTGIILTRM  250 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~d-------a~~G-q~a~~~a~~F~~~~~i~giIlTKl  250 (461)
                      . ..+||+|||||+|.+.   .++...   ..+  -|.++..+.       ++.+ .+.++.++..+...+.-+++++..
T Consensus        73 ~-~~~yD~viID~pp~~~---~~~~~a---l~a--aD~vliP~~ps~~d~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~  143 (211)
T PHA02518         73 V-ASGYDYVVVDGAPQDS---ELARAA---LRI--ADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRA  143 (211)
T ss_pred             H-CCCCCEEEECCCCCCH---HHHHHH---HHH--CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf             4-0678889988999742---999999---995--896999637868789999999999999998665675168886235


Q ss_pred             CCCCCCC-HHHHHHHHHCCCHH
Q ss_conf             5766330-36777888478730
Q gi|254780711|r  251 DGDGRGG-AALSMRTVTGKPIK  271 (461)
Q Consensus       251 D~~akgG-~als~~~~~~~PI~  271 (461)
                      +..++-. -+.......+.|+.
T Consensus       144 ~~~~~~~~~~~~~l~~~~~~v~  165 (211)
T PHA02518        144 IKNTQLYREARKALAGYGLPIL  165 (211)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCC
T ss_conf             8665699999999998699810


No 30 
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=98.57  E-value=1.2e-06  Score=70.94  Aligned_cols=136  Identities=21%  Similarity=0.218  Sum_probs=78.2

Q ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH---CCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf             89962-34433346889999999986148950782054221004779999851---0347--422233210368999999
Q gi|254780711|r  102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE---QIQV--DTLEVIPEQSPEKIAIRA  175 (461)
Q Consensus       102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~---~~~v--~~~~~~~~~dp~~i~~~a  175 (461)
                      ||-|+ .=-|+||||++.-||..+.. .|++|+++-+|-.++..     .|.+   +-+.  |... ....+......+.
T Consensus         3 vi~~~~~KGG~GKtT~a~~la~~~~~-~g~~V~liD~Dpq~s~~-----~W~~~a~~~~~~~~~~~-v~~~~~~~~l~~~   75 (231)
T pfam07015         3 LITFCSFKGGAGKTTALMGLCSALAS-DGKRVALFEADENRPLT-----KWRENALRKGTWDPACE-IFNADELPLLEQA   75 (231)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHH-----HHHHHHHHCCCCCCCCC-EECCCCHHHHHHH
T ss_conf             79996179986599999999999996-89959999689986889-----99998764688887652-2205660158999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-----CCHHCCHHHHHHH----HHHHHHCCCCCEE
Q ss_conf             999974158869983344222112468999999851385110003-----1011122568888----9887635844077
Q gi|254780711|r  176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLV-----ADALTGQDAVHLA----RNFDKIVDLTGII  246 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV-----~da~~Gq~a~~~a----~~F~~~~~i~giI  246 (461)
                      ++.+..++||+|||||+|+...   +....-...     |.++.-     +|+-..-+.+..+    +.+...++ ..++
T Consensus        76 ~~~~~~~~yD~VIIDtpg~~s~---~~~~AI~~A-----DlVLIP~qpSplD~~~a~~t~~~i~~~~~~~~~~ip-~avl  146 (231)
T pfam07015        76 YEHAEGSGFDYALADTHGGSSE---LNNTIIASS-----DLLLIPTMLTPLDIDEALATYRYVIELLLTENLAIP-TAIL  146 (231)
T ss_pred             HHHHHHCCCCEEEECCCCCCCH---HHHHHHHHC-----CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEE
T ss_conf             9988657999899839985758---999999978-----989977899823399999999999999997378998-0334


Q ss_pred             EEECCCC
Q ss_conf             6411576
Q gi|254780711|r  247 LTRMDGD  253 (461)
Q Consensus       247 lTKlD~~  253 (461)
                      +|++-..
T Consensus       147 ~tRv~~~  153 (231)
T pfam07015       147 RQRVPVG  153 (231)
T ss_pred             EEECCCC
T ss_conf             5511400


No 31 
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.56  E-value=9.8e-07  Score=71.59  Aligned_cols=137  Identities=18%  Similarity=0.270  Sum_probs=87.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC---CCCHHHHH----HHHHHHCCCCCCCCCCC---CCHHHHH
Q ss_conf             89962344333468899999999861489507820542---21004779----99985103474222332---1036899
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV---HRPAAQEQ----LRYLGEQIQVDTLEVIP---EQSPEKI  171 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt---~R~aA~eQ----L~~~a~~~~v~~~~~~~---~~dp~~i  171 (461)
                      ||=+.|+.|+||||.+.+|+.+|.. ++++|+++|.|-   |.-||+-.    +..++..-++-+-+...   ....+..
T Consensus         1 viGitG~pGaGKStLi~~l~~~~~~-~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~   79 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRA-RGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRA   79 (148)
T ss_pred             CEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHH
T ss_conf             9762589978789999999999997-898379999688878668620323545344157998368634666654204688


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC-CCCEEEEEC
Q ss_conf             9999999974158869983344222112468999999851385110003101112256888898876358-440776411
Q gi|254780711|r  172 AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD-LTGIILTRM  250 (461)
Q Consensus       172 ~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~-i~giIlTKl  250 (461)
                      +++++.....-+||+|||.|.|-.+.+.+.       ...  -|-+++|++...|.+.  |+..=- -+. -+=+++.|.
T Consensus        80 ~~~~i~~l~~~g~D~IiIETvGvGQse~~i-------~~~--aD~~i~v~~p~~GD~i--Q~~K~g-i~e~aDl~vvNK~  147 (148)
T cd03114          80 TPEVIRVLDAAGFDVIIVETVGVGQSEVDI-------ASM--ADTTVVVMAPGAGDDI--QAIKAG-IMEIADIVVVNKA  147 (148)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCHHHH-------HHH--CCEEEEEECCCCCCHH--HHCCCC-HHHCCCEEEEECC
T ss_conf             999999999759998999748777560265-------543--5669999636887377--611228-5212469999378


Q ss_pred             C
Q ss_conf             5
Q gi|254780711|r  251 D  251 (461)
Q Consensus       251 D  251 (461)
                      |
T Consensus       148 D  148 (148)
T cd03114         148 D  148 (148)
T ss_pred             C
T ss_conf             9


No 32 
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=98.55  E-value=1.3e-06  Score=70.68  Aligned_cols=135  Identities=19%  Similarity=0.194  Sum_probs=77.0

Q ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH---HCCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf             89962-3443334688999999998614895078205422100477999985---10347--422233210368999999
Q gi|254780711|r  102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLG---EQIQV--DTLEVIPEQSPEKIAIRA  175 (461)
Q Consensus       102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a---~~~~v--~~~~~~~~~dp~~i~~~a  175 (461)
                      ||.++ .=-|+||||.+.-||..+.. .|++|+++-+|-.++..     .|.   .+-+.  +...... .+......++
T Consensus         3 vi~~~~~KGG~GKtT~a~~la~~~~~-~g~~v~~iD~Dpq~s~~-----~W~e~a~~~~~~~~~~~v~~-~~~~~~l~~~   75 (231)
T PRK13849          3 LLTFCSFKGGAGKTTALMGLCAALAS-DGKRVALFEADENRPLT-----RWKENALRSNTWDPACEVYA-ADELPLLEAA   75 (231)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHH-----HHHHHHHHCCCCCCCCCEEE-CCCHHHHHHH
T ss_conf             79996189987699999999999997-89959999689986889-----99987652589887752340-5652578999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-----CCHHCCHHHHH----HHHHHHHHCCCCCEE
Q ss_conf             999974158869983344222112468999999851385110003-----10111225688----889887635844077
Q gi|254780711|r  176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLV-----ADALTGQDAVH----LARNFDKIVDLTGII  246 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV-----~da~~Gq~a~~----~a~~F~~~~~i~giI  246 (461)
                      ++.+..++||+|||||+|+...   ++...-...+     .++.-     +|.--.-+.+.    +.+.++..++. .++
T Consensus        76 ~e~~~~~~~D~VIIDtpg~~s~---~~~~Ai~~AD-----LVLIP~qPSp~D~~~a~~tv~~i~~~~~~~~~~ip~-~vl  146 (231)
T PRK13849         76 YEDAELQGFDYALADTHGGSSE---LNNTIIASSN-----LLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPT-AIL  146 (231)
T ss_pred             HHHHHHCCCCEEEECCCCCCCH---HHHHHHHHCC-----EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEE
T ss_conf             9887536998899818997758---9999999789-----899779998667999999999999999972878865-666


Q ss_pred             EEECCC
Q ss_conf             641157
Q gi|254780711|r  247 LTRMDG  252 (461)
Q Consensus       247 lTKlD~  252 (461)
                      +|+.-.
T Consensus       147 ltRv~a  152 (231)
T PRK13849        147 RQRVPV  152 (231)
T ss_pred             EEECCH
T ss_conf             540504


No 33 
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=98.55  E-value=2.7e-06  Score=68.25  Aligned_cols=144  Identities=25%  Similarity=0.337  Sum_probs=75.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-------CH--HH------HH-HHHHHHCCCCCCCC----
Q ss_conf             8996234433346889999999986148950782054221-------00--47------79-99985103474222----
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-------PA--AQ------EQ-LRYLGEQIQVDTLE----  161 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-------~a--A~------eQ-L~~~a~~~~v~~~~----  161 (461)
                      +|++.|==|+||||+++-||..+.. .|+||+++++|--+       +.  +.      +. ...|..........    
T Consensus         1 i~~~sGKGGVGKTTvAaalA~~lA~-~G~rvLlvs~DPah~l~d~~~~~L~~~~~~~~~e~~~~~~~~~v~~~~~~~~~~   79 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAE-EGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAW   79 (217)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9899789966199999999999996-899499995898766532347986513588876667999987501666533311


Q ss_pred             ------------CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCH--HC
Q ss_conf             ------------3321036899999999997415886998334422211246899999985138511--0003101--11
Q gi|254780711|r  162 ------------VIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHE--ILLVADA--LT  225 (461)
Q Consensus       162 ------------~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e--~~lV~da--~~  225 (461)
                                  ..++.+-........+......||+|+||||=-.|.=.-|..+     ....|..  .++|.-+  +.
T Consensus        80 ~~~~~~~~~~~~~~pg~~E~~~l~~~~~~~~~~~yD~IVvDtpPTGhtlrlL~~~-----~L~d~~~t~~~lVt~Pe~~~  154 (217)
T cd02035          80 GGEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRE-----LLTDPERTSFRLVTLPEKLP  154 (217)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH-----HHCCCCCCEEEEEECCCCCH
T ss_conf             0011456777615997899999999999985489988998289855699986788-----72488876799995776217


Q ss_pred             CHHHHHHHHHHHH-HCCCCCEEEEECC
Q ss_conf             2256888898876-3584407764115
Q gi|254780711|r  226 GQDAVHLARNFDK-IVDLTGIILTRMD  251 (461)
Q Consensus       226 Gq~a~~~a~~F~~-~~~i~giIlTKlD  251 (461)
                      =.++..-...+++ .+++.++|+.++=
T Consensus       155 ~~et~r~~~~L~~~gi~v~~vVvN~v~  181 (217)
T cd02035         155 LYETERAITELALYGIPVDAVVVNRVL  181 (217)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             999999999999779988989895882


No 34 
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=98.50  E-value=1.5e-06  Score=70.19  Aligned_cols=155  Identities=18%  Similarity=0.188  Sum_probs=82.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH---------------------HHHHC-------CCCC
Q ss_conf             3443334688999999998614895078205422100477999---------------------98510-------3474
Q gi|254780711|r  107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR---------------------YLGEQ-------IQVD  158 (461)
Q Consensus       107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~---------------------~~a~~-------~~v~  158 (461)
                      |==|+||||+++=||..+.+ .|++|+++-+|.+-+.+.--+.                     .....       -++.
T Consensus         6 ~KGGVGKTT~a~nLA~~la~-~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (212)
T pfam01656         6 TKGGVGKTTLAANLARALAK-RGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNLDPLL   84 (212)
T ss_pred             CCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCCCCEE
T ss_conf             89980699999999999997-89978998389999625886587643444444101011210024564222455558746


Q ss_pred             CCCCCC---CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-C-HHHHHHH
Q ss_conf             222332---1036899999999997415886998334422211246899999985138511000310111-2-2568888
Q gi|254780711|r  159 TLEVIP---EQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-G-QDAVHLA  233 (461)
Q Consensus       159 ~~~~~~---~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-G-q~a~~~a  233 (461)
                      +.+...   ..+................||+|||||++-....        .+.....+|.++.|+.... . .++....
T Consensus        85 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~--------~~~al~~ad~vivv~~p~~~sl~~~~~l~  156 (212)
T pfam01656        85 LIPSNLSLANFESELILEGGEEGLIKLAYDYVIIDGAPGLGEL--------TANALVAADILVVPIEPEGVAVLGAQRLL  156 (212)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH--------HHHHHHCCCEEEEEECCCHHHHHHHHHHH
T ss_conf             5335015667777779999998766604998999479975599--------99999839989999489769999999999


Q ss_pred             HHHHHHCC--CCCEEEEECCCCCCCC---HHHHHHHHHCCCHH
Q ss_conf             98876358--4407764115766330---36777888478730
Q gi|254780711|r  234 RNFDKIVD--LTGIILTRMDGDGRGG---AALSMRTVTGKPIK  271 (461)
Q Consensus       234 ~~F~~~~~--i~giIlTKlD~~akgG---~als~~~~~~~PI~  271 (461)
                      +.+. .++  +-|+|++|.|....--   ........++.|..
T Consensus       157 ~~~~-~l~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (212)
T pfam01656       157 ELVE-RLGLKILGVVLNKVDRGDERHLDKEIEALERKTGIPVL  198 (212)
T ss_pred             HHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf             9999-85996229999148899836630789999999789975


No 35 
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=98.49  E-value=4.2e-06  Score=66.79  Aligned_cols=143  Identities=22%  Similarity=0.324  Sum_probs=87.8

Q ss_pred             CCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH------------H----HHHHC----
Q ss_conf             2588418996234-4333468899999999861489507820542210047799------------9----98510----
Q gi|254780711|r   96 NAPSPLVIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL------------R----YLGEQ----  154 (461)
Q Consensus        96 ~~~~p~vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL------------~----~~a~~----  154 (461)
                      ..+++.||++... .|.||||+++-||.-+....+++|++|-||..||.-...+            .    .+.+.    
T Consensus        31 ~~~~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaDlr~p~l~~~l~~~~~~Gl~d~L~~~~~~l~~~i~~~  110 (207)
T TIGR03018        31 RKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPT  110 (207)
T ss_pred             CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHCCCCCCHHHHEECC
T ss_conf             46788099997899999889999999999997249859999535789971001388999985677438998756723426


Q ss_pred             --CCCCCCCCC-CCCHHHHHH-----HHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH-
Q ss_conf             --347422233-210368999-----9999999741588--69983344222112468999999851385110003101-
Q gi|254780711|r  155 --IQVDTLEVI-PEQSPEKIA-----IRATQSARDGGYD--AVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA-  223 (461)
Q Consensus       155 --~~v~~~~~~-~~~dp~~i~-----~~a~~~a~~~~~D--~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da-  223 (461)
                        -++.+.... ...+|.++.     ..-++.. .+.||  +|||||+=-+...+.     .-+...  -|-++||+.+ 
T Consensus       111 ~~~~l~vlpag~~~~~~~~ll~s~~~~~li~~l-r~~yd~~~VIiDtPPvl~~~Da-----~~la~~--~D~vllVvr~~  182 (207)
T TIGR03018       111 NIGRLSLLPAGRRHPNPTELLASQRMRSLLHEL-ARRYPDRIIIIDTPPLLVFSEA-----RALARL--VGQIVLVVEEG  182 (207)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCCEEEEECCCCCCCHHH-----HHHHHH--CCEEEEEEECC
T ss_conf             887555751689899667654269999999999-9737965799838962232369-----999996--89699999799


Q ss_pred             HCCHHHHHHH-HHHHHHCCCCCEEE
Q ss_conf             1122568888-98876358440776
Q gi|254780711|r  224 LTGQDAVHLA-RNFDKIVDLTGIIL  247 (461)
Q Consensus       224 ~~Gq~a~~~a-~~F~~~~~i~giIl  247 (461)
                      -|..+.+..+ +.+. ..++.|+|+
T Consensus       183 ~t~~~~v~~a~~~L~-~~~vlG~Vl  206 (207)
T TIGR03018       183 RTTQEAVKEALSALE-SCKVLGVVL  206 (207)
T ss_pred             CCCHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             878999999999866-898069996


No 36 
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=98.46  E-value=5.9e-06  Score=65.63  Aligned_cols=155  Identities=17%  Similarity=0.270  Sum_probs=100.0

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---HHH----HHHHHHHHCCCCCCCCCCCCC---
Q ss_conf             5884189962344333468899999999861489507820542210---047----799998510347422233210---
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---AAQ----EQLRYLGEQIQVDTLEVIPEQ---  166 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---aA~----eQL~~~a~~~~v~~~~~~~~~---  166 (461)
                      .++.++|=+.|+.|+||.|.+..|+.+|.. .+++|+++|.|--.|   ||+    --+..++..-++-+-+.....   
T Consensus        46 ~g~a~~iGiTG~pG~GKStli~~l~~~~~~-~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lg  124 (325)
T PRK09435         46 TGNALRIGITGVPGVGKSTFIEALGMHLIE-QGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLG  124 (325)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf             798259974279998688999999999996-7985899997899998886101038888761479984884067788867


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH-CCC-CC
Q ss_conf             3689999999999741588699833442221124689999998513851100031011122568888988763-584-40
Q gi|254780711|r  167 SPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI-VDL-TG  244 (461)
Q Consensus       167 dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~-~~i-~g  244 (461)
                      ..+..+++++.-+..-+||+|||.|.|--+.+.+.       ...+  |-+++|+-...|-+.    +..+.- +.+ |-
T Consensus       125 g~~~~~~~~~~~~~a~g~d~i~iETvGvGQ~e~~v-------~~~~--d~~~~~~~p~~GD~~----Q~~K~GImEiaDi  191 (325)
T PRK09435        125 GVARKTRETMLLCEAAGFDVILVETVGVGQSETAV-------AGMV--DFFLLLQLPGAGDEL----QGIKKGIMELADL  191 (325)
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH-------HHHC--CEEEEEECCCCCCHH----HHHHHHHHHHCCE
T ss_conf             73354999999999779998999706777148899-------8742--668888358876088----9988657750426


Q ss_pred             EEEEECCCCCCCCHHHHHHHH
Q ss_conf             776411576633036777888
Q gi|254780711|r  245 IILTRMDGDGRGGAALSMRTV  265 (461)
Q Consensus       245 iIlTKlD~~akgG~als~~~~  265 (461)
                      ++++|.|++.+.++-.++...
T Consensus       192 ~vVNKaDgd~~~~A~~t~~e~  212 (325)
T PRK09435        192 IVINKADGDNHTAARRAAAEY  212 (325)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             899776755658999999999


No 37 
>KOG0924 consensus
Probab=98.46  E-value=1.3e-05  Score=63.16  Aligned_cols=200  Identities=22%  Similarity=0.297  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99999998718774210002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r   77 IVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ  156 (461)
Q Consensus        77 iv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~  156 (461)
                      .+.++|.+++..           -.||++||-+||||||-+++.-+  ..-.+.+-++.|+.-.|.||+---+..++.++
T Consensus       359 ~~R~~ll~~ir~-----------n~vvvivgETGSGKTTQl~QyL~--edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~  425 (1042)
T KOG0924         359 ACRDQLLSVIRE-----------NQVVVIVGETGSGKTTQLAQYLY--EDGYADNGMIGCTQPRRVAAISVAKRVAEEMG  425 (1042)
T ss_pred             HHHHHHHHHHHH-----------CCEEEEEECCCCCCHHHHHHHHH--HCCCCCCCEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             889999999863-----------85799993588985016679998--62245587154357227899999999999858


Q ss_pred             CCC-----CCCCCC--CHH---------HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCC
Q ss_conf             742-----223321--036---------89999999999741588699833442221124-6899999985138511000
Q gi|254780711|r  157 VDT-----LEVIPE--QSP---------EKIAIRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILL  219 (461)
Q Consensus       157 v~~-----~~~~~~--~dp---------~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~l  219 (461)
                      +++     |+...+  .++         --+.++.+...-...|.+||+|-|---..+.+ ||.=|+.... -.-|..++
T Consensus       426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKli  504 (1042)
T KOG0924         426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLI  504 (1042)
T ss_pred             CCCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHEEEEEECHHHHCCCCHHHHHHHHHHHHH-HHCCCEEE
T ss_conf             76453112488852047876057874230577977633004440178851143303005899999999987-42263599


Q ss_pred             CCCHHCCHHHHHHHHHHHHHCC------CCC------EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCH
Q ss_conf             3101112256888898876358------440------7764115766330367778884787302615867232100136
Q gi|254780711|r  220 VADALTGQDAVHLARNFDKIVD------LTG------IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFP  287 (461)
Q Consensus       220 V~da~~Gq~a~~~a~~F~~~~~------i~g------iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p  287 (461)
                      |..|++  +    |+.|.+.+|      |-|      ++.||.--..-.-+|+.       -+.+|-.+..--|+-+|-+
T Consensus       505 VtSATm--~----a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavk-------q~v~Ihl~~~~GdilIfmt  571 (1042)
T KOG0924         505 VTSATM--D----AQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVK-------QAVQIHLSGPPGDILIFMT  571 (1042)
T ss_pred             EEECCC--C----HHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHHHHHHHH-------HHEEEECCCCCCCEEEECC
T ss_conf             762202--4----89998872788601015876423777526855889999876-------5458544689887799527


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             889987735862788999874211
Q gi|254780711|r  288 DRIANRILGMGDVVSLVEKAARNL  311 (461)
Q Consensus       288 ~~~~~riLGmgD~~~l~e~~~~~~  311 (461)
                              |-.|+..-.+.+++.+
T Consensus       572 --------GqediE~t~~~i~~~l  587 (1042)
T KOG0924         572 --------GQEDIECTCDIIKEKL  587 (1042)
T ss_pred             --------CCCCHHHHHHHHHHHH
T ss_conf             --------8763267899999999


No 38 
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.43  E-value=3.8e-06  Score=67.12  Aligned_cols=124  Identities=23%  Similarity=0.259  Sum_probs=83.5

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----CHHH------------HHHHHHHHCC
Q ss_conf             0002588418996234433346889999999986148950782054221-----0047------------7999985103
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-----PAAQ------------EQLRYLGEQI  155 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-----~aA~------------eQL~~~a~~~  155 (461)
                      ...+..++.++|+||+..|||||-++=||+.+-. .|++|+++-+|.--     ||.+            +||.-+.   
T Consensus        66 ~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~-rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~---  141 (398)
T COG1341          66 KSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLA-RGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFT---  141 (398)
T ss_pred             CCHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCC---
T ss_conf             2012068738999898676788999999988764-474189996899976667974677412567777777758652---


Q ss_pred             CCCCCCC-CCCCHHHHH---HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             4742223-321036899---9999999974158869983344222112468999999851385110003101
Q gi|254780711|r  156 QVDTLEV-IPEQSPEKI---AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       156 ~v~~~~~-~~~~dp~~i---~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                       --|+++ .+...|...   +.+..+.|++. .|++||||.|--+-- .=++=...+.++++|++++.+=++
T Consensus       142 -~~FvG~isP~~~~~~~i~~v~rL~~~a~~~-~~~ilIdT~GWi~G~-~g~elk~~li~~ikP~~Ii~l~~~  210 (398)
T COG1341         142 -LYFVGSISPQGFPGRYIAGVARLVDLAKKE-ADFILIDTDGWIKGW-GGLELKRALIDAIKPDLIIALERA  210 (398)
T ss_pred             -EEEEECCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEECCCCCEECC-HHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             -279851477777689999999999986516-877999699843074-278999998865097789993144


No 39 
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=98.43  E-value=3e-06  Score=67.89  Aligned_cols=142  Identities=15%  Similarity=0.162  Sum_probs=89.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC------HHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210------368999999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ------SPEKIAIRA  175 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~------dp~~i~~~a  175 (461)
                      |+++.|.=||||||.+-.|....  +++++++++..|.-..+ +|.-.  -..-+++++....|-      +....+.++
T Consensus         2 v~iitGFLGsGKTTll~~ll~~~--~~~~~~avI~Ne~g~~~-iD~~l--l~~~~~~v~el~~GciCc~~~~d~~~~l~~   76 (174)
T pfam02492         2 VTVLTGFLGSGKTTLLEHLLRDN--REGLKIAVIVNDFGETG-IDAEL--LRETGAEIVELNNGCICCTIREDLSMVLEA   76 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHC--CCCCCEEEEEECCCCHH-HHHHH--HHHCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             69993488788999999999844--48984799993365302-07999--870696189974886645433369999999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC-CCEEEEECCCC
Q ss_conf             9999741588699833442221124689999998513851100031011122568888988763584-40776411576
Q gi|254780711|r  176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDL-TGIILTRMDGD  253 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i-~giIlTKlD~~  253 (461)
                      +.......+|+|+|.|+|-- .-.    ++.++......+.++-|+||...++..+....|.+.+.. +-+|++|.|--
T Consensus        77 l~~~~~~~~d~iiIE~sGla-~p~----~i~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~~~Qi~~AD~vvlNK~Dl~  150 (174)
T pfam02492        77 LLELKLPRLDLLFIETTGLA-CPA----PVLDLRSDLGLDGVVTVVDVKNFTEGEDIPEKAPDQIAFADLIVINKTDLA  150 (174)
T ss_pred             HHHCCCCCCCEEEEECCCCC-CHH----HHHHHHHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCCEEEEEHHHCC
T ss_conf             98557899999999587667-707----777653202654599999723433002007899999987699998466537


No 40 
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.37  E-value=2e-05  Score=61.65  Aligned_cols=155  Identities=19%  Similarity=0.319  Sum_probs=99.2

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---HHH--H--HHHHHHHCCCCCCCCCCCC
Q ss_conf             00025884189962344333468899999999861489507820542210---047--7--9999851034742223321
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---AAQ--E--QLRYLGEQIQVDTLEVIPE  165 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---aA~--e--QL~~~a~~~~v~~~~~~~~  165 (461)
                      +.+..++++||=+.|+.|+||.|.+.+|...|.. .|.+|++++.|--.|   ||+  |  -++.++..-|+-+-+..+.
T Consensus        44 l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~sr  122 (323)
T COG1703          44 LYPRTGNAHVIGITGVPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSR  122 (323)
T ss_pred             HHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCC
T ss_conf             7311799837873179988668899999999997-796789999889999878530120766776446998178426877


Q ss_pred             ---CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH-CC
Q ss_conf             ---03689999999999741588699833442221124689999998513851100031011122568888988763-58
Q gi|254780711|r  166 ---QSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI-VD  241 (461)
Q Consensus       166 ---~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~-~~  241 (461)
                         ...+.-.++++.-+..-+||+|||.|.|--|.|.+-       ...  .|-+++|+-.-.|-+    .+.++.- +.
T Consensus       123 G~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I-------~~~--aDt~~~v~~pg~GD~----~Q~iK~GimE  189 (323)
T COG1703         123 GTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI-------ANM--ADTFLVVMIPGAGDD----LQGIKAGIME  189 (323)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-------HHH--CCEEEEEECCCCCCH----HHHHHHHHHH
T ss_conf             651016688999999998618988999814788415577-------652--166899965788827----8888741465


Q ss_pred             C-CCEEEEECCCCCCCCHHHHHHH
Q ss_conf             4-4077641157663303677788
Q gi|254780711|r  242 L-TGIILTRMDGDGRGGAALSMRT  264 (461)
Q Consensus       242 i-~giIlTKlD~~akgG~als~~~  264 (461)
                      + +=+++.|.|   +.|+..+...
T Consensus       190 iaDi~vINKaD---~~~A~~a~r~  210 (323)
T COG1703         190 IADIIVINKAD---RKGAEKAARE  210 (323)
T ss_pred             HHHEEEEECCC---HHHHHHHHHH
T ss_conf             40335672567---2658999999


No 41 
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=98.35  E-value=1.5e-05  Score=62.61  Aligned_cols=43  Identities=35%  Similarity=0.427  Sum_probs=34.7

Q ss_pred             CCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             88418996234-433346889999999986148950782054221
Q gi|254780711|r   98 PSPLVIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR  141 (461)
Q Consensus        98 ~~p~vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R  141 (461)
                      .++.||-++-- =|||||||+.-||+++.. .|++|++|-+|.+-
T Consensus       119 ~~~kVIaVaN~KGGVGKTTtav~LA~~LA~-~G~RVLlIDLDPQg  162 (405)
T PRK13869        119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLAL-QGYRVLAVDLDPQA  162 (405)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCHHH
T ss_conf             998289997888776599999999999997-79988999645617


No 42 
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the  protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=98.34  E-value=1e-05  Score=63.82  Aligned_cols=163  Identities=23%  Similarity=0.267  Sum_probs=90.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-----------HHHH-HHHH--HC-----------CC
Q ss_conf             8996234433346889999999986148950782054221004-----------7799-9985--10-----------34
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA-----------QEQL-RYLG--EQ-----------IQ  156 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA-----------~eQL-~~~a--~~-----------~~  156 (461)
                      .|.+.|==|+|||||++-||+.+.. .|+||+++-||..-...           +..+ ....  +.           -+
T Consensus         2 ~iaiyGKGGVGKTTts~NLaaaLA~-~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~g   80 (212)
T cd02117           2 QIAIYGKGGIGKSTTSQNLSAALAE-MGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGG   80 (212)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCC
T ss_conf             5999889835687789999999998-699699990389987330311997787199998752786644566789966887


Q ss_pred             CCCCCCC---CC-----CHHHHHHHHHHHH--HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH---
Q ss_conf             7422233---21-----0368999999999--974158869983344222112468999999851385110003101---
Q gi|254780711|r  157 VDTLEVI---PE-----QSPEKIAIRATQS--ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA---  223 (461)
Q Consensus       157 v~~~~~~---~~-----~dp~~i~~~a~~~--a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da---  223 (461)
                      +.++...   .+     ..... ..+-++.  .....||+||+|+.|-..-..-.+ -   +.. .--+++++|..+   
T Consensus        81 v~~veaggp~~g~~~ag~~i~~-~~~ll~~~~~~~~~~D~IliD~lGdvv~~gf~~-p---i~~-~~Ad~vlIvtt~E~~  154 (212)
T cd02117          81 VKCVESGGPEPGVGCAGRGVIT-AVNLLEKEGFAEDDLDVVLYDVLGDVVCGGFAM-P---IRE-GKADEIYIVTSGEFM  154 (212)
T ss_pred             EEEEECCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEECCCCCEECCCCC-C---CCC-CCCCEEEEECCCCHH
T ss_conf             0899889977676545411788-999999741002579999996588540356334-3---211-668889998069357


Q ss_pred             -HCC-HHHHHHHHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHH
Q ss_conf             -112-2568888988763--58440776411576633036777888478730
Q gi|254780711|r  224 -LTG-QDAVHLARNFDKI--VDLTGIILTRMDGDGRGGAALSMRTVTGKPIK  271 (461)
Q Consensus       224 -~~G-q~a~~~a~~F~~~--~~i~giIlTKlD~~akgG~als~~~~~~~PI~  271 (461)
                       ..+ .+-.+.++.|.+.  +.+.|+|.++.|.+..-..+=-.+..++.||.
T Consensus       155 Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~~~~~~i~~f~~~~g~~vl  206 (212)
T cd02117         155 ALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVI  206 (212)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf             8898899999999997367981489998467888649999999998399189


No 43 
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.31  E-value=3.4e-06  Score=67.46  Aligned_cols=169  Identities=23%  Similarity=0.252  Sum_probs=119.6

Q ss_pred             CCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC---CHHHHHH
Q ss_conf             5884-18996234433346889999999986148950782054221004779999851034742223321---0368999
Q gi|254780711|r   97 APSP-LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE---QSPEKIA  172 (461)
Q Consensus        97 ~~~p-~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~---~dp~~i~  172 (461)
                      ..+| ..|=+.|+-||||||-+-|+...++.+  .++++|+.|.|.---.+.|+..   .++|++....+   ..++...
T Consensus         9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~--~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~   83 (202)
T COG0378           9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDE--YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMN   83 (202)
T ss_pred             HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH--CCEEEEECEEECHHHHHHHHHC---CCCEEEEECCCCCCCCCHHHH
T ss_conf             25864899961799867899999999999752--7768996404006559999737---798068740387658867889


Q ss_pred             HHHHHHHHHCC--CCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH--HHHHHHCCCCCEE
Q ss_conf             99999997415--88699833442221--124689999998513851100031011122568888--9887635844077
Q gi|254780711|r  173 IRATQSARDGG--YDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA--RNFDKIVDLTGII  246 (461)
Q Consensus       173 ~~a~~~a~~~~--~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a--~~F~~~~~i~giI  246 (461)
                      ..|++......  .|+++|-++|-+--  +-+|           .-+..+.|+|.+-|.+.-.-.  -.|.    -+=+|
T Consensus        84 ~~ai~~l~~~~~~~Dll~iEs~GNL~~~~sp~L-----------~d~~~v~VidvteGe~~P~K~gP~i~~----aDllV  148 (202)
T COG0378          84 LEAIEELVLDFPDLDLLFIESVGNLVCPFSPDL-----------GDHLRVVVIDVTEGEDIPRKGGPGIFK----ADLLV  148 (202)
T ss_pred             HHHHHHHHHCCCCCCEEEEECCCCEECCCCCCH-----------HHCEEEEEEECCCCCCCCCCCCCCEEE----EEEEE
T ss_conf             999999863177677899923764324468041-----------304699999878888876557996467----41899


Q ss_pred             EEECCCCCCCCHHHHHHHH------HCCCHHHEE--CCCCCCCCCCC
Q ss_conf             6411576633036777888------478730261--58672321001
Q gi|254780711|r  247 LTRMDGDGRGGAALSMRTV------TGKPIKAIG--TGEKINDLENF  285 (461)
Q Consensus       247 lTKlD~~akgG~als~~~~------~~~PI~fig--~GE~~~dle~F  285 (461)
                      +||.|=-.-.|+-|.+...      -+.||.|..  |||.++++-.|
T Consensus       149 InK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~  195 (202)
T COG0378         149 INKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRF  195 (202)
T ss_pred             EEHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf             85677387728669999999998499998899847878689999999


No 44 
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.29  E-value=7.8e-06  Score=64.71  Aligned_cols=119  Identities=22%  Similarity=0.070  Sum_probs=76.3

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      +..++++|+.|+||||.+.++|+.+... +..|..+++++++.....+..      .....................+.+
T Consensus         2 ~~~ill~G~~GsGKTtl~~~la~~~~~~-~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~   74 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALA   74 (148)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEEEHHHHHHHHHHHHH------HHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             9789999999702999999999872668-996899875998988898765------300011221051999999999999


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHH----HHHHCCCCCCCCCCCHHC
Q ss_conf             7415886998334422211246899999----985138511000310111
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISE----IKSLTNPHEILLVADALT  225 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~----i~~~~~p~e~~lV~da~~  225 (461)
                      +...+++|+||.++++............    ......+.....|+.++.
T Consensus        75 ~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n  124 (148)
T smart00382       75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN  124 (148)
T ss_pred             HHCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf             84499899982750214762079999999999851765789989999569


No 45 
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=98.28  E-value=2.9e-05  Score=60.35  Aligned_cols=44  Identities=34%  Similarity=0.431  Sum_probs=35.4

Q ss_pred             CCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             2588418996234-43334688999999998614895078205422
Q gi|254780711|r   96 NAPSPLVIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus        96 ~~~~p~vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      ...++.||.++-. =|||||||++-||+++.. .|++|++|-.|.+
T Consensus       100 ~g~~~~VIav~N~KGGVGKTTtav~LA~~LA~-~G~RVLvIDLDPQ  144 (387)
T TIGR03453       100 GGEHLQVIAVTNFKGGSGKTTTSAHLAQYLAL-RGYRVLAIDLDPQ  144 (387)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCH
T ss_conf             99988089997888765699999999999997-7998899953701


No 46 
>PRK13768 GTPase; Provisional
Probab=98.28  E-value=0.00051  Score=50.84  Aligned_cols=117  Identities=20%  Similarity=0.219  Sum_probs=63.5

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--------------HHHHHCCCCCCCCCCCC
Q ss_conf             4189962344333468899999999861489507820542210047799--------------99851034742223321
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--------------RYLGEQIQVDTLEVIPE  165 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--------------~~~a~~~~v~~~~~~~~  165 (461)
                      ++.++++|+-||||||-|+.+..|+.. .+++|.+|.-|-   |+ |.+              +..-+..+.    .++|
T Consensus         2 ~~~~~ViGpaGSGKsT~~~~l~~~l~~-~~r~~~vvNLDP---A~-e~~pY~~~iDIRd~i~~~dVM~~~~L----GPNG   72 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLVGALSDWLEE-QGYDVAIVNLDP---AV-EYLPYKPDIDVREYVSAREIMRKYGL----GPNG   72 (253)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCC---CC-CCCCCCCCCCHHHHCCHHHHHHHHCC----CCCH
T ss_conf             718999899999889999999999997-699759997898---66-58999988637861789999988198----9646


Q ss_pred             CH--HHHHHHHHH----HHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf             03--689999999----999741588699833442221--1246899999985138511000310111
Q gi|254780711|r  166 QS--PEKIAIRAT----QSARDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADALT  225 (461)
Q Consensus       166 ~d--p~~i~~~a~----~~a~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da~~  225 (461)
                      .=  ..+....-+    +.......|++|+||+|-...  ..+-+..+-+......+.-+++++|+.-
T Consensus        73 ali~~~e~l~~~~d~l~~~i~~~~~dY~i~D~PGQiElft~~~~~~~i~~~L~~~~~~~~v~l~D~~~  140 (253)
T PRK13768         73 ALIASVDLLLTKAEEIKEEIERLDADYVLVDTPGQMELFAFRESGRYLVEKLSSGSKSLSVYLIDAVL  140 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEECHHH
T ss_conf             89999999999899999998515887599826874432223407999999986368628999845056


No 47 
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=98.28  E-value=4.2e-05  Score=59.19  Aligned_cols=141  Identities=15%  Similarity=0.295  Sum_probs=92.1

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---HHH----HHHHHHHHCCCCCCCCCCCCC---
Q ss_conf             5884189962344333468899999999861489507820542210---047----799998510347422233210---
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---AAQ----EQLRYLGEQIQVDTLEVIPEQ---  166 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---aA~----eQL~~~a~~~~v~~~~~~~~~---  166 (461)
                      .++-.+|=+.|+.|+||+|.+.+|+.+|.. .+++|+++|.|---|   ||+    --+..++..-+| |+.+-...   
T Consensus        26 ~g~a~~iGiTG~PGaGKStli~~l~~~~~~-~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~v-fiRs~~srg~l  103 (267)
T pfam03308        26 TGRAHRVGITGVPGAGKSTLIEALGMELRR-RGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGA-FIRSSPSRGAL  103 (267)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCE-EEEECCCCCCC
T ss_conf             599559987689988799999999999996-8986899997899988886300107777650589985-88645778888


Q ss_pred             -HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH-CCC-C
Q ss_conf             -3689999999999741588699833442221124689999998513851100031011122568888988763-584-4
Q gi|254780711|r  167 -SPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI-VDL-T  243 (461)
Q Consensus       167 -dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~-~~i-~  243 (461)
                       ..+..+++++..+..-+||+|||-|.|=-|.+.+.       .+.  .|-++||+-...|-+.    +..+.- +.+ |
T Consensus       104 GGls~~t~~~i~lleaaGfD~IivETVGVGQsE~~v-------~~~--aD~~llv~~Pg~GDei----Q~iKaGImEiaD  170 (267)
T pfam03308       104 GGLSRATREAILLLDAAGFDVIIIETVGVGQSEVDI-------ANM--ADTFVLVTIPGGGDDL----QGIKAGLMEIAD  170 (267)
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH-------HHH--CCEEEEEECCCCCHHH----HHHHHHHHHHCC
T ss_conf             871476999999999779999999247777530355-------541--5768999558876088----898753765354


Q ss_pred             CEEEEECCC
Q ss_conf             077641157
Q gi|254780711|r  244 GIILTRMDG  252 (461)
Q Consensus       244 giIlTKlD~  252 (461)
                      -++++|.|.
T Consensus       171 i~vVNKaD~  179 (267)
T pfam03308       171 IYVVNKADL  179 (267)
T ss_pred             EEEEECCCH
T ss_conf             899966764


No 48 
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=98.27  E-value=5.4e-06  Score=65.93  Aligned_cols=86  Identities=24%  Similarity=0.320  Sum_probs=53.3

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-CCHH--HHHHHHHHHCCCCCCC----CCCCCCHHH---------HHHH
Q ss_conf             3334688999999998614895078205422-1004--7799998510347422----233210368---------9999
Q gi|254780711|r  110 GSGKTTTTAKIAYHLKTLKKKKILMASLDVH-RPAA--QEQLRYLGEQIQVDTL----EVIPEQSPE---------KIAI  173 (461)
Q Consensus       110 GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~-R~aA--~eQL~~~a~~~~v~~~----~~~~~~dp~---------~i~~  173 (461)
                      |+|||||+.-||..+.. .|++|++|-+|.. +...  ++.-..|++..++++.    ..-...+..         .-..
T Consensus        11 GvGKTTtavnLA~aLA~-~G~rVllIDlDpqq~slt~~l~nr~~~~~~~~~~l~~P~~~~l~~~~~~~~~~~~~~~~~L~   89 (261)
T pfam09140        11 GSGKSTTAVHVAVALLY-LGARVATIDLDLRQRTLTRYIENRAATAERTGLDLPVPKHLCLPDDVSEVFDGESADDARLE   89 (261)
T ss_pred             CCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             87299999999999998-89978999799999851234430355655138653466534455067776134557899999


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             999999741588699833442221
Q gi|254780711|r  174 RATQSARDGGYDAVILDTAGRNHI  197 (461)
Q Consensus       174 ~a~~~a~~~~~D~iiiDTaGR~~~  197 (461)
                      +++... ...||+|||||+|.+..
T Consensus        90 ~al~~l-~~~yDfIlIDcPPsl~~  112 (261)
T pfam09140        90 EAVADL-EQDADFIVIDTPGSDSP  112 (261)
T ss_pred             HHHHHH-HCCCCEEEEECCCCCCH
T ss_conf             999998-75799999969985739


No 49 
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=98.27  E-value=1.5e-05  Score=62.50  Aligned_cols=166  Identities=20%  Similarity=0.184  Sum_probs=84.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH------------HHHHHHHHH-------------HCCC
Q ss_conf             899623443334688999999998614895078205422100------------477999985-------------1034
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA------------AQEQLRYLG-------------EQIQ  156 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a------------A~eQL~~~a-------------~~~~  156 (461)
                      +|.+-|==|+|||||++-||.-|.. .|+||+++-+|.+=+.            ..+-|..-+             ...+
T Consensus         2 ~iai~GKGGVGKTTtsvNLA~aLA~-~GkrVlliDaD~~~~~~~~llg~~~~~~l~d~l~~~~~~~~~~~~~vi~~~~~g   80 (269)
T pfam00142         2 KIAIYGKGGIGKSTTSQNTSAALAE-MGKKVLIVGCDPKADSTRLILGGKAQPTIIDTLREKGLVEDVELEDVVKKGYGG   80 (269)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHEECCCCC
T ss_conf             5899899976889999999999998-799099984589987414443898888478776046770224074501337787


Q ss_pred             CCCCCCCC---CCHHH-HHHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--C
Q ss_conf             74222332---10368-999999999974----15886998334422211246899999985138511000310111--2
Q gi|254780711|r  157 VDTLEVIP---EQSPE-KIAIRATQSARD----GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--G  226 (461)
Q Consensus       157 v~~~~~~~---~~dp~-~i~~~a~~~a~~----~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--G  226 (461)
                      +.+.....   +.... .-...+++....    ..||++|||+.|=.....-     .......-.+++++|+.+-.  =
T Consensus        81 v~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~-----~~~i~~~~A~~viiv~t~E~~al  155 (269)
T pfam00142        81 IRCVESGGPEPGVGCAGRGVITAIDLLEELGAYDDLDFVLYDVLGDVVCGGF-----AMPIREGKAQEVYIVTSGEMMAL  155 (269)
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCEEEEECCCCEEECCC-----CCCHHHCCCCEEEEEECCCHHHH
T ss_conf             2688689986563211078999999999821021288898533674024340-----05334435887999828947899


Q ss_pred             HHHHHHHHH---HHHH--CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEEC
Q ss_conf             256888898---8763--584407764115766330367778884787302615
Q gi|254780711|r  227 QDAVHLARN---FDKI--VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGT  275 (461)
Q Consensus       227 q~a~~~a~~---F~~~--~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~  275 (461)
                      +++....+.   +.+.  +.+.|++.+.-..+..-+.+=.+....+  +.|+|+
T Consensus       156 ~~a~~l~~~i~~~~~~~~~~i~giv~n~~~~~~~~~~~~~~~~~~~--~~~lg~  207 (269)
T pfam00142       156 YAANNICKGILKYAKSGGVRLGGLICNSRKVDDERELIDAFAEALG--TQMIHF  207 (269)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC--CCEEEE
T ss_conf             9999999999998505796278998268654115799999999819--947997


No 50 
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=98.27  E-value=9.1e-06  Score=64.21  Aligned_cols=159  Identities=19%  Similarity=0.110  Sum_probs=79.9

Q ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHH---------H----------HHHH--HHHCCCCCC
Q ss_conf             89962-344333468899999999861489507820542210047---------7----------9999--851034742
Q gi|254780711|r  102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQ---------E----------QLRY--LGEQIQVDT  159 (461)
Q Consensus       102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~---------e----------QL~~--~a~~~~v~~  159 (461)
                      ||.++ +==|+|||||+.-||+.+.+ .|++|++|=+|.......         +          .++.  +...-|+.+
T Consensus         3 iIav~n~KGGVGKTT~avNLA~~La~-~G~rVLlIDlDpQ~~l~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (246)
T TIGR03371         3 VIAIVGIKGGVGRTTLTAALASALKL-LGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLAGEDWRAAAYRSSDGVLF   81 (246)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHCCCCHHHHHEECCCCEEE
T ss_conf             99997599985499999999999996-89978999759998503224888753456999982799888952557898289


Q ss_pred             CCCCC----------CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHH
Q ss_conf             22332----------1036899999999997415886998334422211246899999985138511000310111-225
Q gi|254780711|r  160 LEVIP----------EQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-GQD  228 (461)
Q Consensus       160 ~~~~~----------~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~  228 (461)
                      +....          ..++ ....+.+.......||+|||||+.-+..-.   .   ..  ..-.|+++.|+.+.. ...
T Consensus        82 ip~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~~~D~viiD~pp~l~~~~---~---~a--l~aad~vlipv~~~~~s~~  152 (246)
T TIGR03371        82 LPYGTLSADEREAYQAHDA-GWLARLLQQLDLAARDWVLIDLPRGPSPIT---D---QA--LAAADLVLVVVNADAACYA  152 (246)
T ss_pred             EECCCCCHHHHHHHCCCCH-HHHHHHHHHHCCCCCCEEEEECCCCCCHHH---H---HH--HHHCCEEEEEECCCHHHHH
T ss_conf             7089847778987604478-999999986303679889994899874999---9---99--9988947998189989999


Q ss_pred             ----HHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHH-HHHHCCCH
Q ss_conf             ----688889887635844077641157663303-6777-88847873
Q gi|254780711|r  229 ----AVHLARNFDKIVDLTGIILTRMDGDGRGGA-ALSM-RTVTGKPI  270 (461)
Q Consensus       229 ----a~~~a~~F~~~~~i~giIlTKlD~~akgG~-als~-~~~~~~PI  270 (461)
                          .......+......-+++++++|..++... ++.. ....+.|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~l~~~~~~~~  200 (246)
T TIGR03371       153 TLHQLALALLARSVPPDGIHYLINQFQPARQLSRDVRAVLRATLGSRL  200 (246)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf             999999999984277675178863026401589999999999749881


No 51 
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.26  E-value=1.3e-05  Score=63.12  Aligned_cols=163  Identities=20%  Similarity=0.230  Sum_probs=79.7

Q ss_pred             CEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH------------HHHHHHH-HHC----------C
Q ss_conf             4189962344-33346889999999986148950782054221004------------7799998-510----------3
Q gi|254780711|r  100 PLVIMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA------------QEQLRYL-GEQ----------I  155 (461)
Q Consensus       100 p~vIllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA------------~eQL~~~-a~~----------~  155 (461)
                      +.+|-++..- |+|||||+.-||+++.+.+++||+++-+|-....-            ...+-.. ...          -
T Consensus         2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
T COG1192           2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVVIE   81 (259)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCCCCHHHHHHCCCCCCCHHHCCCCCC
T ss_conf             76999985788851999999999999983899789997899941777846664323103667632333221022034456


Q ss_pred             CCCCCCCCCCCH-HHHHHH------HHHHHH---HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCHH
Q ss_conf             474222332103-689999------999999---74158869983344222112468999999851385110-0031011
Q gi|254780711|r  156 QVDTLEVIPEQS-PEKIAI------RATQSA---RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEI-LLVADAL  224 (461)
Q Consensus       156 ~v~~~~~~~~~d-p~~i~~------~a~~~a---~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~-~lV~da~  224 (461)
                      +++++.....-. +.++..      ..+...   ...+||+|||||++.+..  -...-+..-..++-|-+. .+-+.++
T Consensus        82 ~l~~ip~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~yD~iiID~pp~l~~--l~~nal~asd~vliP~~~~~~~~~~l  159 (259)
T COG1192          82 GLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVKDDYDYIIIDTPPSLGV--LTLNALAAADHVLIPVQPEFLDLEGL  159 (259)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHH--HHHHHHHHHCCEEECCCCCHHHHHHH
T ss_conf             7312357600010045665421178999999752026999899899986167--77999998275567047508689889


Q ss_pred             CC-HHHHHHHHHHH-HHCCCCCEEEEECCCCCCC-CHHHHHHH
Q ss_conf             12-25688889887-6358440776411576633-03677788
Q gi|254780711|r  225 TG-QDAVHLARNFD-KIVDLTGIILTRMDGDGRG-GAALSMRT  264 (461)
Q Consensus       225 ~G-q~a~~~a~~F~-~~~~i~giIlTKlD~~akg-G~als~~~  264 (461)
                      .. .+.+.....++ +.+.+-+++.|++|...+- ...+....
T Consensus       160 ~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  202 (259)
T COG1192         160 EQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLADEVLQELK  202 (259)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             9999999999985245323256743534742015789999999


No 52 
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=98.23  E-value=1.1e-05  Score=63.72  Aligned_cols=58  Identities=22%  Similarity=0.291  Sum_probs=41.5

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEECC-CCC
Q ss_conf             999987187742100025884189962344-3334688999999998614895078205-422
Q gi|254780711|r   80 DELVEVLGKESIELDLNAPSPLVIMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKILMASL-DVH  140 (461)
Q Consensus        80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~lv~~-Dt~  140 (461)
                      +||-+.|+..  |-.....+|.||.++--- |||||||+.-||+++.. .|++|++|-| |-.
T Consensus        88 ~~lR~~~~~~--p~R~~g~~~~VIAVaNqKGGvGKTTTavnLA~~LAl-~G~RVLlID~LDPQ  147 (388)
T PRK13705         88 NHMRDVFGTR--LRRAEDEFPPVIGVAAHKGGVYKTSVSVHLAQDLAL-KGLRVLLVEGNDPQ  147 (388)
T ss_pred             HHHHHHHCCC--CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC
T ss_conf             9999996438--899999987289995278885599999999999997-79908999587888


No 53 
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.21  E-value=8.5e-06  Score=64.45  Aligned_cols=97  Identities=28%  Similarity=0.419  Sum_probs=58.6

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC-------------HHHH---------H---H-HHHHH
Q ss_conf             4189962344333468899999999861489507820542210-------------0477---------9---9-99851
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP-------------AAQE---------Q---L-RYLGE  153 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~-------------aA~e---------Q---L-~~~a~  153 (461)
                      ..+++|+|==|+||||++|-+|.++... |++|++|++|.--.             -++.         .   + +.|.+
T Consensus         2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~   80 (322)
T COG0003           2 TRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDE   80 (322)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHH
T ss_conf             3799993688545899999999999975-990799984898744765423047851125888754660689999999999


Q ss_pred             -------CCCC--------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             -------0347--------4222332103689999999999741588699833442221
Q gi|254780711|r  154 -------QIQV--------DTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHI  197 (461)
Q Consensus       154 -------~~~v--------~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~  197 (461)
                             .+..        +....-+|-|-+.....-.++..+..||+|++|||.-.|+
T Consensus        81 v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~T  139 (322)
T COG0003          81 VKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHT  139 (322)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH
T ss_conf             99999741265542125788986098889999999999987526898899848970878


No 54 
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.20  E-value=2.3e-05  Score=61.12  Aligned_cols=149  Identities=26%  Similarity=0.360  Sum_probs=78.5

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCHH-------------HHH
Q ss_conf             2344333468899999999861489507820542210047799998510-34742223321036-------------899
Q gi|254780711|r  106 VGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQ-IQVDTLEVIPEQSP-------------EKI  171 (461)
Q Consensus       106 vGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~-~~v~~~~~~~~~dp-------------~~i  171 (461)
                      -|==|+||||+++-||..+     ++|+++-+|.+-|...--|..-.+. ..+.........+|             ...
T Consensus         6 SgKGGVGKTT~a~nLA~~l-----~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (179)
T cd03110           6 SGKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVTEV   80 (179)
T ss_pred             ECCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHHHHCCCHHHHHHHH
T ss_conf             5899860999999999974-----28719994189985777718765632122304653351506653235176889999


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH-CC-HH---HHHHHHHHHHHCCCCCEE
Q ss_conf             99999999741588699833442221124689999998513851100031011-12-25---688889887635844077
Q gi|254780711|r  172 AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL-TG-QD---AVHLARNFDKIVDLTGII  246 (461)
Q Consensus       172 ~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~-~G-q~---a~~~a~~F~~~~~i~giI  246 (461)
                      .++.......+.||+|||||+--...  ..+.-+.      .-|.+++|.... .. .+   +++.++.+.  +++ |+|
T Consensus        81 ~~~~~~~~~~~~~D~viiD~Ppg~~~--~~~~al~------~ad~~iiVttP~~~si~d~~r~i~l~~~~~--~~~-gvV  149 (179)
T cd03110          81 RKHAKEIAKAEGAELIIIDGPPGIGC--PVIASLT------GADAALLVTEPTPSGLHDLERAVELVRHFG--IPV-GVV  149 (179)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCH--HHHHHHH------CCCEEEEECCCCHHHHHHHHHHHHHHHHCC--CCE-EEE
T ss_conf             99999986443799899818999757--8999997------399499981994789999999999999829--978-999


Q ss_pred             EEECCCCCCCCH-HHHHHHHHCCCH
Q ss_conf             641157663303-677788847873
Q gi|254780711|r  247 LTRMDGDGRGGA-ALSMRTVTGKPI  270 (461)
Q Consensus       247 lTKlD~~akgG~-als~~~~~~~PI  270 (461)
                      ++|.|....++. .-.+..+.++|+
T Consensus       150 ~Nr~~~~~~~~~~i~~~~~~~~vp~  174 (179)
T cd03110         150 INKYDLNDEIAEEIEDYCEEEGIPI  174 (179)
T ss_pred             EECCCCCCCCHHHHHHHHHHHCCCE
T ss_conf             9688788763489999999809998


No 55 
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.20  E-value=7.8e-05  Score=57.11  Aligned_cols=192  Identities=19%  Similarity=0.218  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             99999999871877421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r   76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI  155 (461)
Q Consensus        76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~  155 (461)
                      ++=+|||-+.||+.-       ...+.+++.|-+|+|||+.+..+++...+ +|.+|..+++.--+-.=++|++.++--+
T Consensus         7 ~~~~d~ld~~lggGi-------p~gs~~li~G~~GtGKsi~~~~~~~~~l~-~g~~~~yis~e~t~~~~i~qm~s~g~di   78 (230)
T PRK08533          7 ELDGDELHKRLGGGI-------PFGSIILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSSQLTTTEFIKQMMSLGYDI   78 (230)
T ss_pred             ECCCHHHHHHHCCCC-------CCCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf             057135788717898-------89848999868998789999999999987-8986999994389999999999869981


Q ss_pred             ----------CCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCEEEEECCCCC-CC--HH----HHHHHHHHHHHHCCCCCC
Q ss_conf             ----------47422233210-36899999999997415886998334422-21--12----468999999851385110
Q gi|254780711|r  156 ----------QVDTLEVIPEQ-SPEKIAIRATQSARDGGYDAVILDTAGRN-HI--ND----SLMQEISEIKSLTNPHEI  217 (461)
Q Consensus       156 ----------~v~~~~~~~~~-dp~~i~~~a~~~a~~~~~D~iiiDTaGR~-~~--d~----~lm~El~~i~~~~~p~e~  217 (461)
                                =+|.|+...+. .-.....+-++..+....|+|+|||..-+ .+  +.    +++..++++...-+  -+
T Consensus        79 ~~~~~~G~l~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gk--tI  156 (230)
T PRK08533         79 NKKLISGKLLYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNK--VI  156 (230)
T ss_pred             HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCC--EE
T ss_conf             7997579679996134335404578999999732664379899990531885167778999999999999985898--89


Q ss_pred             CCCCCHH-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHH
Q ss_conf             0031011-1225688889887635844077641157663303677788847873026158672321001368
Q gi|254780711|r  218 LLVADAL-TGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPD  288 (461)
Q Consensus       218 ~lV~da~-~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~  288 (461)
                      ++.+|-. ...+....   +..  -.+++|-.+...  -||-.-....    =.+|-|....+.+.=+|+.+
T Consensus       157 ilTv~p~~~~e~~l~~---lrs--~aDv~i~L~~~~--vGg~~~r~i~----V~K~~ga~~~~~~~I~F~V~  217 (230)
T PRK08533        157 ILTANPKELPESVLLI---LRT--ASTILIRLEVKV--FGGDLKNSAK----IVKYNMAKGSFQKIIPFRVE  217 (230)
T ss_pred             EEEECCCCCCHHHHHH---HHE--EEEEEEEEEEEE--CCCEEEEEEE----EEEECCCCCCCCCEEEEEEC
T ss_conf             9995633136245442---041--048999987361--0988999999----99844898777864789980


No 56 
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702    This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=98.19  E-value=2.5e-05  Score=60.91  Aligned_cols=145  Identities=19%  Similarity=0.243  Sum_probs=94.2

Q ss_pred             CEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH----------------------HHHHHHHHHHC-C
Q ss_conf             4189962-3443334688999999998614895078205422100----------------------47799998510-3
Q gi|254780711|r  100 PLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA----------------------AQEQLRYLGEQ-I  155 (461)
Q Consensus       100 p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a----------------------A~eQL~~~a~~-~  155 (461)
                      -.+++.. ==.|.|||||.+=+|.-|.. -|+|+|||=+|+..|-                      -.++-=+-.+. -
T Consensus        19 ~K~l~itS~~~~eGKsT~S~NiA~~fAq-aGyKTLlIDgD~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~i~~T~ise   97 (207)
T TIGR01007        19 IKVLLITSVKAGEGKSTTSANIAVSFAQ-AGYKTLLIDGDMRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDAICETNISE   97 (207)
T ss_pred             EEEEEEEECCCCCCCEEEEHHHHHHHHH-CCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCCC
T ss_conf             0589984110588862410788999985-685588875465866036786588876563332214545333420265467


Q ss_pred             CCCCCCCC-CCCHHHHHHH----HHHHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHH
Q ss_conf             47422233-2103689999----999999741588699833442221-12468999999851385110003101-11225
Q gi|254780711|r  156 QVDTLEVI-PEQSPEKIAI----RATQSARDGGYDAVILDTAGRNHI-NDSLMQEISEIKSLTNPHEILLVADA-LTGQD  228 (461)
Q Consensus       156 ~v~~~~~~-~~~dp~~i~~----~a~~~a~~~~~D~iiiDTaGR~~~-d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~  228 (461)
                      +..++.+. ..-+|.++..    ..+=..-.+.||+||||||==... |...      |.+.  .+..+||++| -+-.+
T Consensus        98 nL~vi~sG~vPPNPt~LL~s~~F~~l~e~~~~~fD~iiiDTPPig~V~DAai------~a~~--~d~~~LV~~A~~~~k~  169 (207)
T TIGR01007        98 NLDVITSGPVPPNPTELLQSSNFKTLIETLRKYFDYIIIDTPPIGTVIDAAI------IARA--VDASILVTDAGKIKKR  169 (207)
T ss_pred             CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH------HHHH--HCCEEEEEECCCCCHH
T ss_conf             8727517887877547888899999999987168889995188666788999------9987--2977988722532646


Q ss_pred             HHHHHHHHHHHCC--CCCEEEEECCCC
Q ss_conf             6888898876358--440776411576
Q gi|254780711|r  229 AVHLARNFDKIVD--LTGIILTRMDGD  253 (461)
Q Consensus       229 a~~~a~~F~~~~~--i~giIlTKlD~~  253 (461)
                      .+.=|+.==+..|  +=||||-|+|.+
T Consensus       170 ~v~KAK~~LEq~G~~~LGvvLNK~d~s  196 (207)
T TIGR01007       170 EVKKAKEQLEQAGSKFLGVVLNKVDIS  196 (207)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             789999999861784115888882576


No 57 
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.18  E-value=5.8e-05  Score=58.06  Aligned_cols=150  Identities=19%  Similarity=0.282  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf             99999999999871877421000258841899623443334688999999998614895078205422100477999985
Q gi|254780711|r   73 MVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLG  152 (461)
Q Consensus        73 ~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a  152 (461)
                      .-+..+.++|.+.+..           -.|+.++|.+||||||-+-+.....-.  +..-.+++++-.|.||..=-+-.|
T Consensus        49 LPv~~~~~~i~~ai~~-----------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvA  115 (845)
T COG1643          49 LPVTAVRDEILKAIEQ-----------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVA  115 (845)
T ss_pred             CCCHHHHHHHHHHHHH-----------CCEEEEECCCCCCHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHHHHH
T ss_conf             9818889999999986-----------978998679988758788999996001--668759965843899999999999


Q ss_pred             HCCCCCC-----CCCCCC-----CHHHHHHHHHH------HHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCC
Q ss_conf             1034742-----223321-----03689999999------999741588699833442221124-689999998513851
Q gi|254780711|r  153 EQIQVDT-----LEVIPE-----QSPEKIAIRAT------QSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPH  215 (461)
Q Consensus       153 ~~~~v~~-----~~~~~~-----~dp~~i~~~a~------~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~  215 (461)
                      +.++.++     |....+     ....+++-+|+      ......+|++||||-|---..+.+ ++.=|+++.....||
T Consensus       116 eel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~D  195 (845)
T COG1643         116 EELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDD  195 (845)
T ss_pred             HHHCCCCCCEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             98389867654379996226787714689514799999843802045877997013355688899999999998646887


Q ss_pred             CCCCCCCHHCCHHHHHHHHHHH
Q ss_conf             1000310111225688889887
Q gi|254780711|r  216 EILLVADALTGQDAVHLARNFD  237 (461)
Q Consensus       216 e~~lV~da~~Gq~a~~~a~~F~  237 (461)
                      -.++|++||...+  .-.+-|.
T Consensus       196 LKiIimSATld~~--rfs~~f~  215 (845)
T COG1643         196 LKLIIMSATLDAE--RFSAYFG  215 (845)
T ss_pred             CEEEEEECCCCHH--HHHHHCC
T ss_conf             0599972535889--9997628


No 58 
>pfam02881 SRP54_N SRP54-type protein, helical bundle domain.
Probab=98.18  E-value=2.8e-06  Score=68.14  Aligned_cols=56  Identities=27%  Similarity=0.447  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             989999999999999985246969999999999999830311126998999999999999
Q gi|254780711|r   23 SETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDEL   82 (461)
Q Consensus        23 ~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL   82 (461)
                      +++.++++++|++.+||+|||+++++.++++++++...    .+++++.+.+.++++++|
T Consensus        22 ~~~~i~~~l~ele~~Li~aDvg~~~~~~ii~~l~~~~~----~~~~~~~~~i~~~l~e~L   77 (77)
T pfam02881        22 GEKKIDELLEELEEALLEADVGVETTEKIIERLKELVG----RKGLSDPEEIKKALKEEL   77 (77)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHC
T ss_conf             89860899999999999812468999999999999998----717999999999999769


No 59 
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=98.16  E-value=8.8e-05  Score=56.68  Aligned_cols=39  Identities=31%  Similarity=0.413  Sum_probs=34.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             1899623443334688999999998614895078205422
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      .+|.+.|==|+|||||++-||.-|.+ .|+||+++-+|-+
T Consensus         2 r~Iai~GKGGVGKTTtavNLA~aLa~-~GkkVlliDaDpq   40 (270)
T cd02040           2 RQIAIYGKGGIGKSTTTQNLSAALAE-MGKKVMIVGCDPK   40 (270)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCC
T ss_conf             58999799857789999999999998-7994999865799


No 60 
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.13  E-value=4.3e-05  Score=59.10  Aligned_cols=139  Identities=21%  Similarity=0.256  Sum_probs=77.8

Q ss_pred             EEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9962-344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  103 IMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       103 Illv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      |.++ |==|+||||+++-||..+.+ .|++|+++-+|..-+.       +.-..+..   .....+.    .+.+     
T Consensus         2 Iav~s~KGGVGKTT~a~NLA~aLa~-~g~~vllvD~D~~~~~-------l~~~~~~~---~~~~~~~----~~vl-----   61 (179)
T cd02036           2 IVVTSGKGGVGKTTTTANLGTALAQ-LGYKVVLIDADLGLRN-------LDLILGLE---NRVVYTL----HDVL-----   61 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCC-------CHHHCCCC---CCCCCHH----HCCC-----
T ss_conf             8997399987099999999999997-7991899958999998-------36661765---5665313----1126-----


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-C-HHHHHHHHHHHH-HCCCCCEEEEECCCCCCCCH
Q ss_conf             15886998334422211246899999985138511000310111-2-256888898876-35844077641157663303
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-G-QDAVHLARNFDK-IVDLTGIILTRMDGDGRGGA  258 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-G-q~a~~~a~~F~~-~~~i~giIlTKlD~~akgG~  258 (461)
                       .-|+|||||+.......      .....  ..|++++|+.... . .++....+.+++ ..+.-|+|+++.+.......
T Consensus        62 -~gD~viiD~ppg~~~~~------~~~l~--~ad~vlvv~~p~~~sl~~~~~~~~~~~~~~~~~~~vv~Nr~~~~~~~~~  132 (179)
T cd02036          62 -AGDYILIDSPAGIERGF------ITAIA--PADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGG  132 (179)
T ss_pred             -CCCEEEEECCCCCCHHH------HHHHH--HCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH
T ss_conf             -69999997999988899------99998--4681256378858899999999999982599646999845467666367


Q ss_pred             --HHHHHHHHCCCH
Q ss_conf             --677788847873
Q gi|254780711|r  259 --ALSMRTVTGKPI  270 (461)
Q Consensus       259 --als~~~~~~~PI  270 (461)
                        .-.+....+.|+
T Consensus       133 ~~~~~~~~~l~~~v  146 (179)
T cd02036         133 DMVEDIEEILGVPL  146 (179)
T ss_pred             HHHHHHHHHCCCCE
T ss_conf             79999998559967


No 61 
>PRK10818 cell division inhibitor MinD; Provisional
Probab=98.11  E-value=7.7e-05  Score=57.16  Aligned_cols=153  Identities=18%  Similarity=0.259  Sum_probs=78.8

Q ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-----------HHHHHHHH------H-------CCC
Q ss_conf             89962-34433346889999999986148950782054221004-----------77999985------1-------034
Q gi|254780711|r  102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA-----------QEQLRYLG------E-------QIQ  156 (461)
Q Consensus       102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA-----------~eQL~~~a------~-------~~~  156 (461)
                      ||.+. |==|+|||||+.-||..|.. .|+||+++-+|..-+..           ++-...+.      +       .-+
T Consensus         4 vIaV~s~KGGVGKTT~avNLA~aLA~-~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i~~~~~~~   82 (270)
T PRK10818          4 IIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN   82 (270)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHEEECCCCCC
T ss_conf             99997899984189999999999997-79968999689999888734576776666689883699858890544687699


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHH----HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHH
Q ss_conf             7422233210368999999999----97415886998334422211246899999985138511000310111--22568
Q gi|254780711|r  157 VDTLEVIPEQSPEKIAIRATQS----ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAV  230 (461)
Q Consensus       157 v~~~~~~~~~dp~~i~~~a~~~----a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~  230 (461)
                      +.+.......+...+....++.    .+..+||+|||||+--+...        .+....-.|++++|.-.-.  =.++.
T Consensus        83 l~ilpa~~~~~~~~~~~~~~~~~l~~l~~~~yDyIiID~ppgl~~~--------~~~al~aad~vlvv~tpe~~al~da~  154 (270)
T PRK10818         83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--------ALMALYFADEAIITTNPEVSSVRDSD  154 (270)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH--------HHHHHHHCCEEEEECCCCHHHHHHHH
T ss_conf             7997999647675545999999999777659989998899986689--------99999858968997389788998799


Q ss_pred             HHHHHHHH---HC-----CC-CCEEEEECCC-CCCCCHHHHHH
Q ss_conf             88898876---35-----84-4077641157-66330367778
Q gi|254780711|r  231 HLARNFDK---IV-----DL-TGIILTRMDG-DGRGGAALSMR  263 (461)
Q Consensus       231 ~~a~~F~~---~~-----~i-~giIlTKlD~-~akgG~als~~  263 (461)
                      ...+.|..   ..     ++ .++++|+.|. ....+..+++.
T Consensus       155 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (270)
T PRK10818        155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSME  197 (270)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHCCEEEEEECHHHCCHHHHCCHH
T ss_conf             9999999877765335201001258842453123211001299


No 62 
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129   Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK  resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=98.11  E-value=7.4e-05  Score=57.28  Aligned_cols=147  Identities=18%  Similarity=0.359  Sum_probs=90.6

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---HHH--HH--HHHHH------HCCCCC
Q ss_conf             100025884189962344333468899999999861489507820542210---047--79--99985------103474
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---AAQ--EQ--LRYLG------EQIQVD  158 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---aA~--eQ--L~~~a------~~~~v~  158 (461)
                      .+.+..+.-++|=+.|+.|+||.|.+-||...+.. +|++|++||.|--=|   ||+  |.  |+-++      ..=+| 
T Consensus        30 ~i~p~~GnA~~vG~TG~PGaGKSTl~~~l~~~lrR-rG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~-  107 (333)
T TIGR00750        30 RILPKTGNAHVVGITGVPGAGKSTLVEKLIMELRR-RGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGV-  107 (333)
T ss_pred             HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf             86243279078766468888577799999899976-5976899988797597551454568877544222233228985-


Q ss_pred             CCCCCCCC----HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH
Q ss_conf             22233210----36899999999997415886998334422211246899999985138511000310111225688889
Q gi|254780711|r  159 TLEVIPEQ----SPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR  234 (461)
Q Consensus       159 ~~~~~~~~----dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~  234 (461)
                      |+.+.+.+    -.+.-+.+.+.-+..-+||+|||-|-|=-|.+-+       |.+.+.. -+++.| +-+|-|    .+
T Consensus       108 FIRs~ptrG~lGGls~at~~~~~lldA~G~DVI~vETVGVGQSEVd-------i~~~aDT-~v~v~~-pg~GDd----~Q  174 (333)
T TIGR00750       108 FIRSMPTRGSLGGLSKATRELVKLLDAAGYDVILVETVGVGQSEVD-------IINMADT-FVVVTI-PGTGDD----VQ  174 (333)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHH-------HHHHHCE-EEEEEC-CCCCCH----HH
T ss_conf             6767766675257879999999999863898799984157524878-------8734150-589854-887834----66


Q ss_pred             HHHHH-CCC-CCEEEEECCCC
Q ss_conf             88763-584-40776411576
Q gi|254780711|r  235 NFDKI-VDL-TGIILTRMDGD  253 (461)
Q Consensus       235 ~F~~~-~~i-~giIlTKlD~~  253 (461)
                      ..+.- +.| |=+++-|-|+.
T Consensus       175 ~iKaG~mEiaDI~VVNKaD~~  195 (333)
T TIGR00750       175 GIKAGVMEIADIYVVNKADGE  195 (333)
T ss_pred             HHHHHHHEEEEEEEEECCCCC
T ss_conf             665443023248788168876


No 63 
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=98.09  E-value=0.00013  Score=55.40  Aligned_cols=166  Identities=22%  Similarity=0.253  Sum_probs=87.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH------------HHHHHHHHH------------CCC
Q ss_conf             18996234433346889999999986148950782054221004------------779999851------------034
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA------------QEQLRYLGE------------QIQ  156 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA------------~eQL~~~a~------------~~~  156 (461)
                      ..|.+.|==|+|||||++-||+.|.+.+|+||++|.||-.--.-            .|.|+....            .-+
T Consensus         3 ~~iaiyGKGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk~dST~~l~g~~~~~tv~d~l~~~~~~~~~~e~ii~~g~~g   82 (275)
T PRK13233          3 RKIAIYGKGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGFKG   82 (275)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCC
T ss_conf             38999899854465459999999996479889997978876136776089878839999986288755388887537898


Q ss_pred             CCCCCCC---CC----CHHHHHHHHHHHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HC
Q ss_conf             7422233---21----036899999999997--4158869983344222112468999999851385110003101--11
Q gi|254780711|r  157 VDTLEVI---PE----QSPEKIAIRATQSAR--DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LT  225 (461)
Q Consensus       157 v~~~~~~---~~----~dp~~i~~~a~~~a~--~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~  225 (461)
                      +.+....   ++    ..-+-.+.+-++...  ...+|+|++|+.|=.--..=     .--.+....+|+++|..+  |.
T Consensus        83 v~cVEaGgp~pG~gcagrgii~~~~lle~~~~~~~~~D~Vl~DvLGdVvcGgF-----a~Pir~~~AdeV~IVts~E~ms  157 (275)
T PRK13233         83 IRCVESGGPEPGVGCAGRGVITAITLMEEHGAYEDDLDFVFFDVLGDVVCGGF-----AMPIRDGKAQEVYIVASGEMMA  157 (275)
T ss_pred             CEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC-----CCCCCCCCCCEEEEEECCCHHH
T ss_conf             57986899986665576312358888998097434688899841561105551-----0343136688899994683799


Q ss_pred             CHHHHHHHHH---HHH--HCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHH
Q ss_conf             2256888898---876--358440776411576633036777888478730
Q gi|254780711|r  226 GQDAVHLARN---FDK--IVDLTGIILTRMDGDGRGGAALSMRTVTGKPIK  271 (461)
Q Consensus       226 Gq~a~~~a~~---F~~--~~~i~giIlTKlD~~akgG~als~~~~~~~PI~  271 (461)
                      =..|-++.+.   |.+  .+.+.|+|++..+.+..--.+=.....++.|+.
T Consensus       158 L~aannI~~~l~~~~~~~~~~l~Gii~N~r~~~~e~~~v~~fa~~ig~~vi  208 (275)
T PRK13233        158 LYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQLI  208 (275)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             999999999999985058963899997178886079999999998599579


No 64 
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.09  E-value=0.00011  Score=56.11  Aligned_cols=106  Identities=20%  Similarity=0.217  Sum_probs=65.5

Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC---CCC
Q ss_conf             99987187742100025884189962344333468899999999861489507820542210047799998510---347
Q gi|254780711|r   81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQ---IQV  157 (461)
Q Consensus        81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~---~~v  157 (461)
                      +|-++||+.-.       .-.+++++|..|+||||.|-.+|....+ .+.+|+.+++.-|++.-+.|+....-.   -++
T Consensus        11 ~lD~~LgGGi~-------~G~itei~G~pG~GKTtl~lq~a~~~~~-~g~~vlYidtE~~~~er~~qi~~~~~~~~~~~i   82 (224)
T PRK09361         11 SLDELLGGGIE-------RGTITQIYGPPGSGKTNICIQLAVEAAR-QGKKVIYIDTEGLSPERFKQIAGEDFEELLSNI   82 (224)
T ss_pred             HHHHHHCCCCC-------CCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHCCCHHHHHHCC
T ss_conf             99986269988-------8879999899998599999999999997-499099967876788999998565734542061


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             42223321036899999999997415886998334422
Q gi|254780711|r  158 DTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN  195 (461)
Q Consensus       158 ~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~  195 (461)
                      .++.... -+....+-..++....+++++|+||..--+
T Consensus        83 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~lvVIDSi~~~  119 (224)
T PRK09361         83 IIFEPSS-FEEQREAIQKAEKIAKENVGLIVLDSATSL  119 (224)
T ss_pred             EEECCCC-HHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf             4724798-899999999999875058738999623010


No 65 
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=98.08  E-value=0.00016  Score=54.80  Aligned_cols=197  Identities=23%  Similarity=0.297  Sum_probs=106.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-----------CCHHHHHHHHHH---HCC-----------C
Q ss_conf             899623443334688999999998614895078205422-----------100477999985---103-----------4
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH-----------RPAAQEQLRYLG---EQI-----------Q  156 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~-----------R~aA~eQL~~~a---~~~-----------~  156 (461)
                      +|.+.|=-|+|||||++-|++-|.. .|+||++|.||--           -+--+|.|+...   +.+           +
T Consensus         2 kiaiyGKGGIGKSTttaNl~aaLA~-~G~kVl~IgcDpk~Dst~~L~g~~~~tvld~l~~~~~~~~~~~~~d~v~~g~~g   80 (267)
T cd02032           2 VLAVYGKGGIGKSTTSSNLSVALAK-RGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGG   80 (267)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCHHHHHHCCCCC
T ss_conf             7999779965787789999999998-799599977899515567526988683999998608866641477875307678


Q ss_pred             CCCCCCC---CC----CHHHHHHHHHHHHHH-HCCCCEEEEECCCCCC---CHHHHHHHHHHHHHHCCCCCCCCCCCH--
Q ss_conf             7422233---21----036899999999997-4158869983344222---112468999999851385110003101--
Q gi|254780711|r  157 VDTLEVI---PE----QSPEKIAIRATQSAR-DGGYDAVILDTAGRNH---INDSLMQEISEIKSLTNPHEILLVADA--  223 (461)
Q Consensus       157 v~~~~~~---~~----~dp~~i~~~a~~~a~-~~~~D~iiiDTaGR~~---~d~~lm~El~~i~~~~~p~e~~lV~da--  223 (461)
                      +.+....   .+    ..-+..+.+-++... .+.||+||+|+.|---   --..+ .         --++++.|.++  
T Consensus        81 v~cvEaGgP~pg~Gcagrgi~~~~~lL~~l~~~~~~D~Vl~DvlgdVvcgGFa~pi-~---------~Ad~~~iVTs~e~  150 (267)
T cd02032          81 VDCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGGFAAPL-N---------YADYALIVTDNDF  150 (267)
T ss_pred             CEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC-C---------CCCEEEEEECCCH
T ss_conf             45766589999988776404899999987166434778999536654456656761-0---------0688999956718


Q ss_pred             HCCHHHHHHHHHHHH-----HCCCCCEEEEECCCCCCCCHHH-HHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             112256888898876-----3584407764115766330367-7788847873026158672321001368899877358
Q gi|254780711|r  224 LTGQDAVHLARNFDK-----IVDLTGIILTRMDGDGRGGAAL-SMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM  297 (461)
Q Consensus       224 ~~Gq~a~~~a~~F~~-----~~~i~giIlTKlD~~akgG~al-s~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm  297 (461)
                      |.=.+|-++++.-.+     .+.+.|+|..+.|+    ...+ -.+..++.|+.-         .-|.+..-..+++-|+
T Consensus       151 ~sl~aAn~I~~~i~~~~~~~~~rl~GlI~Nr~~~----~~~i~~fa~~lg~~lig---------~VP~d~~V~~se~~g~  217 (267)
T cd02032         151 DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK----TDLIDKFVEAVGMPVLA---------VLPLIEDIRRSRVKGK  217 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHHHHHHCCCEEE---------ECCCCHHHHHHHHCCC
T ss_conf             7899999999999997533797642278746985----78999999972994699---------6699338899987398


Q ss_pred             CCHHHHHHHHHHHH--H--HHHHHHHHHHHHCC
Q ss_conf             62788999874211--2--67899888653104
Q gi|254780711|r  298 GDVVSLVEKAARNL--N--EKQAALTAKKIAKG  326 (461)
Q Consensus       298 gD~~~l~e~~~~~~--d--~~~~~~l~~k~~~g  326 (461)
                          +++|-+++.-  .  -++..++++++.++
T Consensus       218 ----tvie~~p~~~~~s~~a~~Yr~LA~~i~~n  246 (267)
T cd02032         218 ----TLFEMDESDEELAYRCDYYLLIADQLLAG  246 (267)
T ss_pred             ----EEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             ----68984899843789999999999999839


No 66 
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.06  E-value=0.00032  Score=52.40  Aligned_cols=170  Identities=18%  Similarity=0.202  Sum_probs=91.5

Q ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEE-----CC-CCCCCHHHHHHHHHHHCCC-----CCCCCCCC-----
Q ss_conf             8996234-433346889999999986148950782-----05-4221004779999851034-----74222332-----
Q gi|254780711|r  102 VIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMA-----SL-DVHRPAAQEQLRYLGEQIQ-----VDTLEVIP-----  164 (461)
Q Consensus       102 vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv-----~~-Dt~R~aA~eQL~~~a~~~~-----v~~~~~~~-----  164 (461)
                      +|+..|. +|+|||+.++-|++++++ +|.+|+..     .+ +..+..-...++..+....     .|+.-..+     
T Consensus         1 ~ifI~GT~T~vGKT~vt~~L~~~l~~-~G~~v~~~KPv~tG~~~~~~~~Da~~~~~~~~~~~~~~~~~p~~~~~p~sP~~   79 (223)
T PRK00090          1 VLFVTGTDTGVGKTVVTAALAQALRE-QGYRVAGYKPVQSGCDGGLRNGDALALQRLSGLPLDYELVNPYRFEEPLSPHL   79 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHH
T ss_conf             98998689997699999999999997-89948997512048988997279999999808999867605402588989899


Q ss_pred             -------CCHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCHH-HHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHHHH
Q ss_conf             -------1036899999999997415886998334422--2112-468999999851385110003101112--256888
Q gi|254780711|r  165 -------EQSPEKIAIRATQSARDGGYDAVILDTAGRN--HIND-SLMQEISEIKSLTNPHEILLVADALTG--QDAVHL  232 (461)
Q Consensus       165 -------~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~--~~d~-~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~~~  232 (461)
                             .-|... +.++++.. .+.+|++||.-||-+  +.+. ..+.++   .+..+ -.++||.++..|  ..++-.
T Consensus        80 aa~~~g~~i~~~~-i~~~~~~l-~~~~d~vlvEGaGGl~~Pl~~~~~~~Dl---a~~l~-~pvILV~~~~lG~inhtllt  153 (223)
T PRK00090         80 AARLEGVTIDLEK-ISAALREL-AQQADLVLVEGAGGLLVPLTDDLTLADL---AAQLQ-LPVILVVGVKLGCINHTLLT  153 (223)
T ss_pred             HHHHHCCCCCHHH-HHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHH---HHHHC-CCEEEEECCCCCHHHHHHHH
T ss_conf             9999098468999-99999999-8318989994688655675678788999---99968-89899976988809999998


Q ss_pred             HHHHH-HHCCCCCEEEEECCCCCC--CCHHHHHHHHHCCCHHHEECCCCCC
Q ss_conf             89887-635844077641157663--3036777888478730261586723
Q gi|254780711|r  233 ARNFD-KIVDLTGIILTRMDGDGR--GGAALSMRTVTGKPIKAIGTGEKIN  280 (461)
Q Consensus       233 a~~F~-~~~~i~giIlTKlD~~ak--gG~als~~~~~~~PI~fig~GE~~~  280 (461)
                      +++.. ..+.+-|+|+.+++++..  --..-.+...+++|+  +|+==.++
T Consensus       154 ~eal~~~gl~v~GvI~N~~~~~~~~~~~~~~~l~~~~gvPv--LG~iP~~~  202 (223)
T PRK00090        154 LEAIRARGLPLAGWVANGVPPEGLRHAENLATLAELLPAPL--LGRLPYLA  202 (223)
T ss_pred             HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCE--EEECCCCC
T ss_conf             99999689948999996858836677768999998549988--99758999


No 67 
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=98.05  E-value=0.00016  Score=54.81  Aligned_cols=162  Identities=20%  Similarity=0.220  Sum_probs=94.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----------CHHHHHHHHHHHC----------CCCCCC
Q ss_conf             8996234433346889999999986148950782054221-----------0047799998510----------347422
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-----------PAAQEQLRYLGEQ----------IQVDTL  160 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-----------~aA~eQL~~~a~~----------~~v~~~  160 (461)
                      -|.+.|==|.|||||++-||+.+..  ++||+++.||-..           |--.+.|+.+.+.          -|+.+.
T Consensus         4 ~iAiyGKGGIGKSTt~~NlaaalA~--g~rVl~igcDpk~dst~~L~G~~~ptvl~~l~~~~~~~~~dvv~~g~~gi~cv   81 (264)
T PRK13231          4 KIAIYGKGGIGKSTTVSNMAAAYSS--DNSTLVIGCDPKADTTRTLVGKRIPTVLDTLKDNRQPELEDIIYEGYNNTLCV   81 (264)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHCCCCCCHHHHHHHCCCCCHHHHEEECCCCEEEE
T ss_conf             8999789854788899999999987--99779985688850246761999883889863127777656312178984997


Q ss_pred             CCCCCCHH--------HHHHHHHHHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCCHH
Q ss_conf             23321036--------899999999997--4158869983344222112468999999851385110003101--11225
Q gi|254780711|r  161 EVIPEQSP--------EKIAIRATQSAR--DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LTGQD  228 (461)
Q Consensus       161 ~~~~~~dp--------~~i~~~a~~~a~--~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~Gq~  228 (461)
                      .... ..|        +-.+.+-++...  ...+|+|++|+.|-.--..--|    -+ +.---+|+++|..+  |.=.+
T Consensus        82 esGg-pepg~gcagrgi~~~~~lLe~~~~~~~~~D~vl~Dvlgdvvcggfa~----Pi-r~~~Adev~IVts~e~msLya  155 (264)
T PRK13231         82 ESGG-PEPGVGCAGRGVIVAMNLLEKLGVFDNDPDVVIYDVLGDVVCGGFSV----PL-REDYADEVYIVTSGEYMSLYA  155 (264)
T ss_pred             ECCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEC----CC-CCCCCCEEEEEECCCHHHHHH
T ss_conf             3799-88776656521768989998726422479879994358720566704----55-426698899994785899999


Q ss_pred             HHHHHHHHHH-HCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHH
Q ss_conf             6888898876-358440776411576633036777888478730
Q gi|254780711|r  229 AVHLARNFDK-IVDLTGIILTRMDGDGRGGAALSMRTVTGKPIK  271 (461)
Q Consensus       229 a~~~a~~F~~-~~~i~giIlTKlD~~akgG~als~~~~~~~PI~  271 (461)
                      |.++++.+.+ ...+.|+|.+..+.+..-..+=..+..+|.|+.
T Consensus       156 AnnI~~~i~~~~~rl~GiI~N~r~~~~e~~iv~~fa~~~g~~vl  199 (264)
T PRK13231        156 ANNIAKGIKKLKGKLGGIICNCRNVKNEVEIVSEFASLIGSRII  199 (264)
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             99999999995464420896068988779999999997199689


No 68 
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.05  E-value=8.7e-05  Score=56.74  Aligned_cols=132  Identities=23%  Similarity=0.349  Sum_probs=87.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CCCC-----CCCHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742-----2233-----2103689
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LEVI-----PEQSPEK  170 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~~~-----~~~dp~~  170 (461)
                      .|+.++|-+||||||-+-|+..-.-  .|....++++--.|.||+-=-+-.|+..+.++     |...     +...-+.
T Consensus        90 qVvii~GeTGsGKTTQiPq~~le~g--~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VGY~VRf~~~~s~~t~i~  167 (1295)
T PRK11131         90 QVVIVAGETGSGKTTQLPKICLELG--RGIKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTMVK  167 (1295)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC--CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf             9699976899987889999999627--99999899779659999999999999819998998888945698879997799


Q ss_pred             HHHHHHHH------HHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHH
Q ss_conf             99999999------9741588699833442221124-6899999985138511000310111225688889887
Q gi|254780711|r  171 IAIRATQS------ARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFD  237 (461)
Q Consensus       171 i~~~a~~~------a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~  237 (461)
                      .+-+|+--      -..++|++||||-|---..+.+ |+-=|+++.. -.|+-.+.+++||+  |+-.-++-|+
T Consensus       168 ~~TdGiLL~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~-~R~dLKvIimSATi--d~e~fs~yF~  238 (1295)
T PRK11131        168 LMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDLKVIITSATI--DPERFSRHFN  238 (1295)
T ss_pred             EECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCC--CHHHHHHHCC
T ss_conf             97656999986209987887779986855688019999999999983-39998899955868--9799996579


No 69 
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.04  E-value=0.00029  Score=52.80  Aligned_cols=169  Identities=16%  Similarity=0.228  Sum_probs=98.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHH
Q ss_conf             8996234433346889999999986148950782054221004779999851034742-------223321036899999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-------LEVIPEQSPEKIAIR  174 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-------~~~~~~~dp~~i~~~  174 (461)
                      |.++.|-=||||||.+-.|-   ...++++++++--|.-. ..+|.--. ++ ...++       +.+....|...-..+
T Consensus         6 VtiltGFLGaGKTTlL~~lL---~~~~~~riaVivNEfGe-v~iD~~li-~~-~~~~v~eL~nGCiCCs~~~dl~~~l~~   79 (317)
T PRK11537          6 VTLLTGFLGAGKTTLLRHIL---NEQHGYKIAVIENEFGE-VSVDDQLI-GD-RATQIKTLTNGCICCSRSNELEDALLD   79 (317)
T ss_pred             EEEEEECCCCCHHHHHHHHH---HCCCCCCEEEEEECCCC-CCCHHHHH-HC-CCCCEEEECCCCEEEEECCHHHHHHHH
T ss_conf             89983088889999999997---27789978999837614-53329887-35-653268844773687305228999999


Q ss_pred             HHHHHHHC--CCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf             99999741--58869983344222112468999---999851385110003101112256888898876358-4407764
Q gi|254780711|r  175 ATQSARDG--GYDAVILDTAGRNHINDSLMQEI---SEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD-LTGIILT  248 (461)
Q Consensus       175 a~~~a~~~--~~D~iiiDTaGR~~~d~~lm~El---~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~-i~giIlT  248 (461)
                      -++.....  .+|+|||-|+| ...=..+++.+   ..+...+.-+-++=|+||..+++..+.-..+.+.+. -+-+++|
T Consensus        80 l~~~~~~~~~~~D~IiIEtsG-lAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~~~~l~~~~~~~~Qi~~AD~illn  158 (317)
T PRK11537         80 LLDNLDRGNIQFDRLVIECTG-MADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT  158 (317)
T ss_pred             HHHHHHCCCCCCCEEEEECCC-CCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCEEEEE
T ss_conf             998664357775479996257-7883999999861256565320365599986655576653034667666318689974


Q ss_pred             ECCCCCCCCHHHHHHHH--HCCCHHHEECCC
Q ss_conf             11576633036777888--478730261586
Q gi|254780711|r  249 RMDGDGRGGAALSMRTV--TGKPIKAIGTGE  277 (461)
Q Consensus       249 KlD~~akgG~als~~~~--~~~PI~fig~GE  277 (461)
                      |.|--+.--.+......  ...||.....|+
T Consensus       159 K~Dlv~~~~~l~~~l~~lNp~A~i~~~~~~~  189 (317)
T PRK11537        159 KTDVAGEAEKLRERLARINARAPVYTVTHGD  189 (317)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             2002365999999999868998489964687


No 70 
>KOG1805 consensus
Probab=97.99  E-value=5.7e-05  Score=58.11  Aligned_cols=168  Identities=17%  Similarity=0.176  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             878989999999999999---98524696999999999999983031112699899999999999998718774210002
Q gi|254780711|r   20 GSLSETDISNTLREIRRT---FLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLN   96 (461)
Q Consensus        20 ~~l~e~~i~~~l~ei~~a---LLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~   96 (461)
                      -.||++++.......+..   |+..|+.....++++-..+.-..-......+.|+  +.++   .+..+=.+....+...
T Consensus       607 ~ridK~d~~ss~s~~r~nL~~l~~~~~~~~~lRdlivd~~pP~f~~~~~~~~~p~--~~~~---~~~~LN~dQr~A~~k~  681 (1100)
T KOG1805         607 FRIDKEDIMSSASTKRGNLMSLLLNDEGGKILRDLIVDLKPPKFVDALSKVLIPK--IKKI---ILLRLNNDQRQALLKA  681 (1100)
T ss_pred             EECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCH--HHHH---HHHHCCHHHHHHHHHH
T ss_conf             3404776541666643149887257743014887765058952421565446702--5678---8753188999999998


Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH-
Q ss_conf             5884189962344333468899999999861489507820542210047799998510347422233210368999999-
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA-  175 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a-  175 (461)
                      =.--.--|..|..|+|||||++-|-+-+.. .|++|++.+ -|  --|+|-+-.=-+..++++.....++-.-.-+++. 
T Consensus       682 L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-~gkkVLLts-yT--hsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~  757 (1100)
T KOG1805         682 LAAEDYALILGMPGTGKTTTISLLIKILVA-LGKKVLLTS-YT--HSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFT  757 (1100)
T ss_pred             HHCCCHHEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEE-HH--HHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH
T ss_conf             730332203269989812259999999997-388189985-05--67889999987506711034487222446899871


Q ss_pred             ------------HH-------------------HHHHCCCCEEEEECCCCCC
Q ss_conf             ------------99-------------------9974158869983344222
Q gi|254780711|r  176 ------------TQ-------------------SARDGGYDAVILDTAGRNH  196 (461)
Q Consensus       176 ------------~~-------------------~a~~~~~D~iiiDTaGR~~  196 (461)
                                  ++                   -|..+.+|++|||-|+-.+
T Consensus       758 ~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~  809 (1100)
T KOG1805         758 LTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQIL  809 (1100)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCEEEECCCCCCC
T ss_conf             2344545339999997289767999715788655521426789986511114


No 71 
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.97  E-value=0.00069  Score=49.87  Aligned_cols=173  Identities=21%  Similarity=0.292  Sum_probs=96.8

Q ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCHHHH----HHHHH
Q ss_conf             8996234-433346889999999986148950782054221004779-99985103474222332103689----99999
Q gi|254780711|r  102 VIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ-LRYLGEQIQVDTLEVIPEQSPEK----IAIRA  175 (461)
Q Consensus       102 vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ-L~~~a~~~~v~~~~~~~~~dp~~----i~~~a  175 (461)
                      .||+.|. -|+||||-++=|+++|++ +|.+|.---|-   |--+|+ +..+  ..+.|.+.    -||.-    .++..
T Consensus         5 ~lmI~gt~S~~GKT~vt~gL~r~l~~-rG~~VapFK~G---PDyIdp~~~~~--a~g~~~~n----LD~~l~~~~~v~~~   74 (451)
T PRK01077          5 ALVIAAPASGSGKTTVTLGLMRALRR-RGLRVQPFKVG---PDYIDPAFHAA--ATGRPSRN----LDSWMMGEDLVRAL   74 (451)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCC---CCCCCHHHHHH--HHCCCCCC----CCHHHCCHHHHHHH
T ss_conf             79998689999789999999999996-87945753578---57629899999--97897535----88344899999999


Q ss_pred             HHHHHHCCCCEEEEECC-----CCCCCHH-HHHHHHHHHHHHCCCCCCCCCCCHH-CCHHHHHHHHHH---HHHCCCCCE
Q ss_conf             99997415886998334-----4222112-4689999998513851100031011-122568888988---763584407
Q gi|254780711|r  176 TQSARDGGYDAVILDTA-----GRNHIND-SLMQEISEIKSLTNPHEILLVADAL-TGQDAVHLARNF---DKIVDLTGI  245 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTa-----GR~~~d~-~lm~El~~i~~~~~p~e~~lV~da~-~Gq~a~~~a~~F---~~~~~i~gi  245 (461)
                      ... ..+.+|++||.-+     |....+. .--.|+.   +.++ .-++||+|+. +++....++..|   ...+.|-|+
T Consensus        75 ~~~-~~~~~D~~viEG~mGlyDG~~~~~~~gS~aeiA---~~l~-~PViLViD~~~~~~s~aa~v~G~~~~~~~~~I~Gv  149 (451)
T PRK01077         75 FAR-AAGGADIAVIEGVMGLFDGAGGDPDKGSTADIA---RLLG-APVVLVVDASGMAQSAAALVLGFARFDPDLNIAGV  149 (451)
T ss_pred             HHH-HCCCCCEEEEEECHHCCCCCCCCCCCCCHHHHH---HHHC-CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             997-546688899850101134545677777789999---8709-98899984662089999999999975977877489


Q ss_pred             EEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             7641157663303677788847873026158672321001368899877358
Q gi|254780711|r  246 ILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM  297 (461)
Q Consensus       246 IlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm  297 (461)
                      |+.|+-|+...--.=.+...+++|  .+|+=-+.+++.      +-+|=||.
T Consensus       150 IlNk~~g~~h~~ll~~~ie~~gvp--vlG~lP~~~~l~------lpeRHLGL  193 (451)
T PRK01077        150 ILNRVGSERHYQLLREALEELGLP--VLGALPRDAALA------LPERHLGL  193 (451)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCC--EEEEECCCCCCC------CCCCCCCC
T ss_conf             962478766899999999863995--798615763345------64212577


No 72 
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.94  E-value=0.00013  Score=55.31  Aligned_cols=143  Identities=15%  Similarity=0.207  Sum_probs=86.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-------CCCHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233-------21036899999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-------PEQSPEKIAIR  174 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-------~~~dp~~i~~~  174 (461)
                      |.++.|-=||||||.+-++..   ...+++++++--|.-..+ +|.--  -...+.+++...       ...|-.....+
T Consensus         2 v~iitGFLGaGKTTll~~lL~---~~~~~~~avIvNEfG~~~-ID~~l--l~~~~~~v~el~~GCiCCs~~~dl~~~l~~   75 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILT---EQHGRKIAVIENEFGEVG-IDNQL--VVDTDEEIIEMNNGCICCTVRGDLIRALLD   75 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHH---CCCCCCEEEEEECCCCCC-CCHHH--HHCCCCEEEEECCCEEEEECCCHHHHHHHH
T ss_conf             089984888999999999984---788997799970765546-31667--637882499933871465225158999999


Q ss_pred             HHHHHH--HCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf             999997--4158869983344222112468999---999851385110003101112256888898876358-4407764
Q gi|254780711|r  175 ATQSAR--DGGYDAVILDTAGRNHINDSLMQEI---SEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD-LTGIILT  248 (461)
Q Consensus       175 a~~~a~--~~~~D~iiiDTaGR~~~d~~lm~El---~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~-i~giIlT  248 (461)
                      .++...  ...+|.|+|-|+|=-+-. ++++.+   ..+......+-++-|+||....+..+....+.+.+. -+-++++
T Consensus        76 l~~~~~~~~~~~d~iiIE~SGla~P~-~i~~~~~~~~~l~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD~ivln  154 (158)
T cd03112          76 LLERLDAGKIAFDRIVIETTGLADPG-PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLN  154 (158)
T ss_pred             HHHHHHCCCCCCCEEEEECCCCCCCH-HHHHHHHCCHHHHCEEECCCEEEEECHHHHHHHHHCCHHHHHHHHHCCEEEEE
T ss_conf             99976515788788999636878828-99998860714321074387699981898776432446999999968999996


Q ss_pred             ECC
Q ss_conf             115
Q gi|254780711|r  249 RMD  251 (461)
Q Consensus       249 KlD  251 (461)
                      |.|
T Consensus       155 K~D  157 (158)
T cd03112         155 KTD  157 (158)
T ss_pred             CCC
T ss_conf             677


No 73 
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.93  E-value=1.8e-05  Score=62.04  Aligned_cols=47  Identities=36%  Similarity=0.536  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             43334688999999998614895078205422100477999985103474222332103689999999999741588699
Q gi|254780711|r  109 QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVI  188 (461)
Q Consensus       109 ~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~ii  188 (461)
                      =|+||||++.-||.++.. .|++|+++-+|.+                                           ||+||
T Consensus         9 GGvGKtt~~~~la~~~a~-~g~~vl~iD~DpQ-------------------------------------------yD~ii   44 (104)
T cd02042           9 GGVGKTTTAVNLAAALAR-RGKRVLLIDLDPQ-------------------------------------------YDYII   44 (104)
T ss_pred             CCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC-------------------------------------------CCEEE
T ss_conf             987689999999999997-7992999977988-------------------------------------------88899


Q ss_pred             EECCCCCCCHH
Q ss_conf             83344222112
Q gi|254780711|r  189 LDTAGRNHIND  199 (461)
Q Consensus       189 iDTaGR~~~d~  199 (461)
                      |||+++.....
T Consensus        45 IDtpp~~~~~~   55 (104)
T cd02042          45 IDTPPSLGLLT   55 (104)
T ss_pred             EECCCCCCHHH
T ss_conf             97949998999


No 74 
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.92  E-value=2.9e-05  Score=60.42  Aligned_cols=69  Identities=29%  Similarity=0.389  Sum_probs=50.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      +|.+.|..|+||||+++-||.++.+ .|++|+++-                                             
T Consensus         1 ~i~~~~~kGvGKTT~a~~La~~la~-~g~~Vl~vD---------------------------------------------   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAK-RGKRVLLID---------------------------------------------   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEC---------------------------------------------
T ss_conf             9898589977689999999999998-899699986---------------------------------------------


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             1588699833442221124689999998513851100031011
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL  224 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~  224 (461)
                         |+|+|||++.......+     .......++.++.++...
T Consensus        35 ---d~iiiD~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~   69 (99)
T cd01983          35 ---DYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPE   69 (99)
T ss_pred             ---CCEEECCCCCCCHHHHH-----HHHHHHHCCEEEEECCCC
T ss_conf             ---71788589988846899-----998787589589965984


No 75 
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.90  E-value=0.00013  Score=55.39  Aligned_cols=131  Identities=18%  Similarity=0.203  Sum_probs=84.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CCCCCC-----CHHHHH
Q ss_conf             8996234433346889999999986148950782054221004779999851034742-----223321-----036899
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LEVIPE-----QSPEKI  171 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~~~~~-----~dp~~i  171 (461)
                      +++++|++||||||-+--.-  + ......--++++--.|.||..=-+-.|+..|-++     |....+     ..-+.+
T Consensus        22 ~~vl~a~tGsGKtTqvP~~l--l-~~~~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e~~~s~~Tri~~   98 (812)
T PRK11664         22 QVLLKAPTGAGKSTWLPLQL--L-QQGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEV   98 (812)
T ss_pred             EEEEEECCCCCHHHHHHHHH--H-HCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEE
T ss_conf             79999089999899999999--9-64688993899388399999999999997299999867578256778899857999


Q ss_pred             HHHHH------HHHHHCCCCEEEEECCCCCCCHHHH-HHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC
Q ss_conf             99999------9997415886998334422211246-8999999851385110003101112256888898876358
Q gi|254780711|r  172 AIRAT------QSARDGGYDAVILDTAGRNHINDSL-MQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD  241 (461)
Q Consensus       172 ~~~a~------~~a~~~~~D~iiiDTaGR~~~d~~l-m~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~  241 (461)
                      +-+|+      ..-...+|++||+|-+---+.+.++ +.=+.++.....||-.++|++||.-      +..|.+.++
T Consensus        99 ~T~GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvvMSATld------~~~~~~~~~  169 (812)
T PRK11664         99 VTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD------NDRLQQLLP  169 (812)
T ss_pred             ECHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC------HHHHHHHCC
T ss_conf             75589999972497767788899957546875189999999999986189828999847888------488997589


No 76 
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=97.90  E-value=0.00012  Score=55.70  Aligned_cols=58  Identities=17%  Similarity=0.298  Sum_probs=40.5

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECC-CCC
Q ss_conf             99998718774210002588418996234-43334688999999998614895078205-422
Q gi|254780711|r   80 DELVEVLGKESIELDLNAPSPLVIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASL-DVH  140 (461)
Q Consensus        80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~-Dt~  140 (461)
                      +||-+.|+....  .+....|.||-++-. =|||||||++-||+++.. .|++|++|-| |-.
T Consensus        88 ~~lR~~l~~~~~--rp~~~~~~VIAVaN~KGGVGKTTTavnLA~~LAl-~G~RVL~ID~lDPQ  147 (387)
T PHA02519         88 SHMRDHFGNPNQ--RPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLAL-QGHRVLLIEGNDPQ  147 (387)
T ss_pred             HHHHHHHCCCCC--CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCC
T ss_conf             999998645667--9898875289986168877699999999999997-69968999598852


No 77 
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.88  E-value=0.00027  Score=53.02  Aligned_cols=114  Identities=19%  Similarity=0.211  Sum_probs=71.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
                      |+++|+.||||||.+..|+.++.. .+..|.+++.|..|-..             +++....++..-.....+++.+...
T Consensus         2 ivl~GlP~SGKSt~a~~L~~~l~~-~~~~~i~~~~d~~~~~~-------------~~~~~~~Ek~~r~~~~~~v~~~l~~   67 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELSKKLSE-KNIDNIILGTDLIRESF-------------PVWKEKYEEFIRDSTLYLIKTALKN   67 (249)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-HCCCEEEECCCCCHHHH-------------HHCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             789678999899999999999998-29965996552002120-------------0033677999899999999998433


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf             588699833442221124689999998513851100031011122568888988763
Q gi|254780711|r  183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI  239 (461)
Q Consensus       183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~  239 (461)
                       -++||+|---   +=..+--||-.+.+...-....+-+++     ..+++..++..
T Consensus        68 -~~~vI~D~~n---YiKg~RYEL~clAk~~~t~~c~I~~~~-----p~e~c~~~N~~  115 (249)
T TIGR03574        68 -KYSVIVDDTN---YYNSKRRDLINIAKEYNKNYIIIYLKA-----PLDTLLRRNIE  115 (249)
T ss_pred             -CCEEEECCCC---HHHHHHHHHHHHHHHCCCCEEEEEECC-----CHHHHHHHHHH
T ss_conf             -7669972732---788999999999998499869999739-----99999998760


No 78 
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=97.88  E-value=0.00011  Score=55.88  Aligned_cols=106  Identities=17%  Similarity=0.246  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             25884189962344333468899999999861489507820542210047799998510347422233210368999999
Q gi|254780711|r   96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA  175 (461)
Q Consensus        96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a  175 (461)
                      ...+|..|++.|.+||||||.+..+...+.   +..+.+|.+|.||.--- +...+... +-...+.....+...++...
T Consensus         8 ~~~~Pkai~laG~pGAGKS~~~~~~~~~~~---~~~~v~In~D~~r~~~P-~y~~l~~~-~~~~~~~~~~~~a~~~~~~~   82 (191)
T pfam06414         8 PQERPVAVLLGGQPGAGKTELARALLEELG---GGNVVRIDPDELRTYHP-DYDELQKA-DPKDASELTQPDASRWVEKL   82 (191)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHCC---CCCCEEECCHHHHHHHH-HHHHHHHC-CHHHHHHHHHHHHHHHHHHH
T ss_conf             876987999957998888999999987537---89938971358788777-47865540-76778999899999999999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCHH-HHHHHHHH
Q ss_conf             999974158869983344222112-46899999
Q gi|254780711|r  176 TQSARDGGYDAVILDTAGRNHIND-SLMQEISE  207 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTaGR~~~d~-~lm~El~~  207 (461)
                      ++++.+++++ +||||.+|....- .+++.+++
T Consensus        83 ~~~a~~~r~n-~iiegT~~~~~~~~~~~~~lk~  114 (191)
T pfam06414        83 IDYAIERGYN-IILEGTLRSPDVARKLARKLKA  114 (191)
T ss_pred             HHHHHHCCCC-EEEECCCCCHHHHHHHHHHHHH
T ss_conf             9999975999-8985777897999999999997


No 79 
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.87  E-value=0.00054  Score=50.68  Aligned_cols=106  Identities=15%  Similarity=0.177  Sum_probs=65.4

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH------
Q ss_conf             99998718774210002588418996234433346889999999986148950782054221004779999851------
Q gi|254780711|r   80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE------  153 (461)
Q Consensus        80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~------  153 (461)
                      ++|-++|++.-       .+.+++++.|..|+||||.+..+++...+ +|.++++++++--+..-+.|.+.++=      
T Consensus        19 ~~lD~~l~GG~-------p~g~~~li~G~~G~GKt~~~~~f~~~~~~-~g~~~~~~~~ee~~~~~~~~~~~~g~dl~~~~   90 (241)
T PRK06067         19 EEIDRKLGGGI-------PFGSLILIEGENDTGKSVLSQQFVWGALN-QGKRGLAITTENTSKSYLKQMESLKLDISDFF   90 (241)
T ss_pred             HHHHHHCCCCC-------CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCHHHHHHHHHHCCCCHHHHH
T ss_conf             55786506997-------79908999807998879999999999986-79829999942899999999998399859998


Q ss_pred             ---CCCC-CCCCCC---CCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             ---0347-422233---210368999999999974158869983344
Q gi|254780711|r  154 ---QIQV-DTLEVI---PEQSPEKIAIRATQSARDGGYDAVILDTAG  193 (461)
Q Consensus       154 ---~~~v-~~~~~~---~~~dp~~i~~~a~~~a~~~~~D~iiiDTaG  193 (461)
                         .+.+ |+....   ...++..+...-++..+..+.++|+||+--
T Consensus        91 ~~G~L~i~~~~~~~~~~~~~~~~~ll~~l~~~v~~~~~~~vVIDSls  137 (241)
T PRK06067         91 IWGYLRIFPLNTEGFEWNSELAEKLLDLIIEFIKRRREEVIIIDSLT  137 (241)
T ss_pred             HCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHH
T ss_conf             66970578324111342155689999999999997199899992801


No 80 
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.86  E-value=0.00013  Score=55.53  Aligned_cols=108  Identities=22%  Similarity=0.302  Sum_probs=79.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-CC-----CCCCCCEEEEEEC
Q ss_conf             99999852469699999999999998303111269989999999999999871877421-00-----0258841899623
Q gi|254780711|r   34 IRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIE-LD-----LNAPSPLVIMLVG  107 (461)
Q Consensus        34 i~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~-l~-----~~~~~p~vIllvG  107 (461)
                      +.++|..+.+.+..+-++...+++.+..+.. ..++. +.+.+.|++.|.+-=+++... +.     .....|.+||+.|
T Consensus        22 l~rslt~~gi~~~~A~~ia~ei~~~L~~~~~-~~i~~-~el~~~v~~~l~~~~~~~~a~rY~~~r~~r~~~~pliILigG   99 (306)
T PRK04220         22 LARSLTAAGMKPDLAYEIASEIEEELKKEGI-TKITK-EELRRRVYYKLIEKDYEEIAEKYLLWRRIRKSKEPIIILIGG   99 (306)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-EEECH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             9999998089888999999999999986577-16359-999999999999844099999999999985369987999858


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf             443334688999999998614895078205422100477999985
Q gi|254780711|r  108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLG  152 (461)
Q Consensus       108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a  152 (461)
                      ..|+||+|-++.||.++--   .  -++++|+-|    |=|+.+-
T Consensus       100 tsGvGKSTlA~~LA~rLgI---~--~visTD~IR----EVmR~~~  135 (306)
T PRK04220        100 ASGVGTSTIAFELASRLGI---R--SVIGTDSIR----EVMRKII  135 (306)
T ss_pred             CCCCCHHHHHHHHHHHHCC---C--EEECCHHHH----HHHHHCC
T ss_conf             9988789999999997098---8--342221699----9998524


No 81 
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.84  E-value=0.00074  Score=49.64  Aligned_cols=107  Identities=21%  Similarity=0.208  Sum_probs=63.2

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH-HHHHCC--C
Q ss_conf             9999871877421000258841899623443334688999999998614895078205422100477999-985103--4
Q gi|254780711|r   80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR-YLGEQI--Q  156 (461)
Q Consensus        80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~-~~a~~~--~  156 (461)
                      .||-++||+.-.       +-.++++.|..|+||||-|--+|..+.+ .+.+|+.+++--.-+.-+.|+. .-.+.+  +
T Consensus         6 ~~lD~vLgGGi~-------~G~it~i~G~pG~GKStl~lq~a~~~~~-~g~~v~YidtE~~~~er~~qi~~~~~~~~~~~   77 (218)
T cd01394           6 KGLDELLGGGVE-------RGTVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEGLSSERFRQIAGDRPERAASS   77 (218)
T ss_pred             HHHHHHHCCCCC-------CCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             789998569987-------8879999899998499999999999863-69869999665567699999987536665305


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             742223321036899999999997415886998334422
Q gi|254780711|r  157 VDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN  195 (461)
Q Consensus       157 v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~  195 (461)
                      +.++....-.+-..+. +-++....++.++|+||..--+
T Consensus        78 i~v~~~~~~~~~~~~i-~~~~~~~~~~~~lvViDSi~tl  115 (218)
T cd01394          78 IIVFEPMDFNEQGRAI-QETETFADEKVDLVVVDSATAL  115 (218)
T ss_pred             CEEECCCCHHHHHHHH-HHHHHHHHCCCCEEEEECCHHH
T ss_conf             1462678768899999-9999764147729999140455


No 82 
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.82  E-value=0.00046  Score=51.19  Aligned_cols=123  Identities=22%  Similarity=0.340  Sum_probs=81.0

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             23443334688999999998614895078205422100477999985103474222332103689999999999741588
Q gi|254780711|r  106 VGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYD  185 (461)
Q Consensus       106 vGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D  185 (461)
                      -|=-|+||||.++-||..+.+ .|++|+++-+|.-                ..                      +-+||
T Consensus         6 sgKgGvGkt~~~~nLa~~la~-~G~~vll~D~D~g----------------~a----------------------n~~~D   46 (139)
T cd02038           6 SGKGGVGKTNISANLALALAK-LGKRVLLLDADLG----------------LA----------------------NLDYD   46 (139)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC----------------CC----------------------CCCCC
T ss_conf             499998399999999999997-8996999989899----------------96----------------------57999


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCCHHHHHHHHHHHHHCCCC--CEEEEECCCCCCCCHHHH
Q ss_conf             69983344222112468999999851385110003101--11225688889887635844--077641157663303677
Q gi|254780711|r  186 AVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LTGQDAVHLARNFDKIVDLT--GIILTRMDGDGRGGAALS  261 (461)
Q Consensus       186 ~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~Gq~a~~~a~~F~~~~~i~--giIlTKlD~~akgG~als  261 (461)
                      +|||||+...+.+.      ..+...  .|++++|.-.  +.=.||....+..++..+..  .+|+.+..+...+=....
T Consensus        47 ~viiD~~aG~~~~~------~~~~~~--ad~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~v~s~~ea~~~~~  118 (139)
T cd02038          47 YIIIDTGAGISDNV------LDFFLA--ADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVFK  118 (139)
T ss_pred             EEEEECCCCCCHHH------HHHHHH--CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf             99994899987789------999995--8957999589706799999999999996399975999956899999999999


Q ss_pred             -----HHHHHCCCHHHEEC
Q ss_conf             -----78884787302615
Q gi|254780711|r  262 -----MRTVTGKPIKAIGT  275 (461)
Q Consensus       262 -----~~~~~~~PI~fig~  275 (461)
                           +....++++.|+|.
T Consensus       119 ~l~~v~~kfL~v~l~~lG~  137 (139)
T cd02038         119 RLSNVSNRFLGLSLDYLGF  137 (139)
T ss_pred             HHHHHHHHHCCCCCCCCEE
T ss_conf             9999999980998310714


No 83 
>PRK08116 hypothetical protein; Validated
Probab=97.82  E-value=0.0003  Score=52.68  Aligned_cols=137  Identities=20%  Similarity=0.261  Sum_probs=81.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      ...=++|.|..|+|||-.++=+|+.+.. +|.+|+++++-.+    +++|+.-        |......+-.+    -++.
T Consensus       107 ~~~GLll~G~~GtGKThLa~aIa~~l~~-~g~~V~~~~~~~l----l~~lk~~--------~~~~~~~~~~e----~l~~  169 (262)
T PRK08116        107 ESVGLLLWGSPGNGKTYLAAAIANELIE-KGVPVVFVNVPEL----LNRIKST--------YNSEGKEDENE----IIRA  169 (262)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEHHHH----HHHHHHH--------HHCCCCHHHHH----HHHH
T ss_conf             6861899898999899999999999998-7993999889999----9999999--------86356101999----9998


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf             97415886998334422211246899999985138511000310111225688889887635844077641157663303
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGA  258 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~  258 (461)
                      .  ..+|++|||--|--...++-.+.+-.                                                   
T Consensus       170 l--~~~dLLIiDDlG~e~~t~w~~e~lf~---------------------------------------------------  196 (262)
T PRK08116        170 L--DNADLLILDDLGAEKDTEWVREKLYN---------------------------------------------------  196 (262)
T ss_pred             H--HCCCEEEEEHHCCCCCCHHHHHHHHH---------------------------------------------------
T ss_conf             6--12998998322145698789999999---------------------------------------------------


Q ss_pred             HHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf             677788847873026158672321001368899877358627889998
Q gi|254780711|r  259 ALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEK  306 (461)
Q Consensus       259 als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~  306 (461)
                      +++-++..++|+.|.+ --..++|+....+|++|||+.|.-++.+--.
T Consensus       197 IIn~Ry~~~kptIiTT-Nl~~~eL~~~~~~Ri~sRl~e~~~~v~~~G~  243 (262)
T PRK08116        197 IIDSRYRKGLPTIFTT-NLSLEELKNQYGKRTYSRILEMCTPVKNEGK  243 (262)
T ss_pred             HHHHHHHCCCCEEEEC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf             9999997699989987-9999999998637999999867789985177


No 84 
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=97.81  E-value=0.00013  Score=55.48  Aligned_cols=123  Identities=23%  Similarity=0.244  Sum_probs=62.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054-22100477999985103474222332103689999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD-VHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D-t~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      ..|.++|-.++||||-+-.|-...... .. ....+.. +..--..||-+      |+..-....             .+
T Consensus         4 rnVaivG~~n~GKSTL~n~Ll~~~~~i-~~-~~~~~~~~~~d~~~~E~~r------giTi~~~~~-------------~~   62 (185)
T pfam00009         4 RNIGIIGHVDHGKTTLTDALLYVTGAI-DK-RGEVKQEGELDRLKEERER------GITIKIAAV-------------SF   62 (185)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCC-CC-CCCCCCCCCCCCCHHHHHC------CEEEEEEEE-------------EE
T ss_conf             789999389944999999997154876-54-6431003333655888857------826987699-------------99


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHH-----HHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             74158869983344222112468999999851385110003101112256-----888898876358440776411576
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDA-----VHLARNFDKIVDLTGIILTRMDGD  253 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a-----~~~a~~F~~~~~i~giIlTKlD~~  253 (461)
                      ..+++.+.||||+|  |.  +.+.++..-  ....|-++||+||..|-..     ...++..  .++ -=++++|+|--
T Consensus        63 ~~~~~~i~~iDtPG--h~--~f~~~~~~~--l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~--~~p-~iv~vNKiD~v  132 (185)
T pfam00009        63 ETKKRHINIIDTPG--HV--DFTKEMIRG--AAQADGAILVVDAVEGVMPQTREHLLLAKQL--GVP-IIVFINKMDRV  132 (185)
T ss_pred             EECCCEEEEEECCC--CC--CHHHHHHHH--HHHCCCCEEEEECCCCCCCCCHHHHHHHHHH--CCC-EEEEEECCCCC
T ss_conf             60893689998998--71--439999999--8646564299986768532309999999982--898-79999773277


No 85 
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.81  E-value=0.00053  Score=50.75  Aligned_cols=123  Identities=15%  Similarity=0.200  Sum_probs=73.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             96234433346889999999986148950782054221004779999851034742-22332103689999999999741
Q gi|254780711|r  104 MLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-LEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       104 llvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
                      ..-|--|+||||.++-||..+.+ .|++|+++-+|.+-|-             +|. |...   -...+.++-+......
T Consensus         4 v~s~kggvgkst~~~~la~~l~~-~g~~v~~~d~di~gps-------------ip~~~rGp---~~~~~i~q~l~~~~w~   66 (169)
T cd02037           4 VMSGKGGVGKSTVAVNLALALAK-LGYKVGLLDADIYGPS-------------IPKMWRGP---MKMGAIKQFLTDVDWG   66 (169)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCCCC-------------CCEEEECH---HHHHHHHHHHHHCCCC
T ss_conf             97499988199999999999998-7997899971379997-------------55012047---3899999999852546


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCCHHHHHHHHHHHHH-CCCCCEEEEE
Q ss_conf             58869983344222112468999999851385110003101--1122568888988763-5844077641
Q gi|254780711|r  183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LTGQDAVHLARNFDKI-VDLTGIILTR  249 (461)
Q Consensus       183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~Gq~a~~~a~~F~~~-~~i~giIlTK  249 (461)
                      .+|++||||.--.. |     |--.+...+..++.++|---  ..=.|+....+-|++. +++-|+|.-.
T Consensus        67 ~lDyLIID~PPGtg-D-----~~lt~~~~~~~d~~IvVTTP~~~s~~Da~r~i~~~~~~~i~i~GvVeNM  130 (169)
T cd02037          67 ELDYLVIDMPPGTG-D-----EHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENM  130 (169)
T ss_pred             CCCEEEEECCCCCC-H-----HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             67889996899987-0-----7787987505674799946958899999999999997599707999879


No 86 
>PRK04328 hypothetical protein; Provisional
Probab=97.80  E-value=0.0018  Score=46.61  Aligned_cols=66  Identities=23%  Similarity=0.255  Sum_probs=48.4

Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             999871877421000258841899623443334688999999998614895078205422100477999985103474
Q gi|254780711|r   81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD  158 (461)
Q Consensus        81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~  158 (461)
                      .|-++|++.-       .+.+++++.|..|+||||.+...++.-.+ +|.+++.++.+--    .+|+...+...|.+
T Consensus        12 gLD~lL~GGl-------p~gs~~Lv~G~pGtGKT~la~qFl~~g~~-~GE~~lyis~eE~----~~~l~~~~~~~G~d   77 (250)
T PRK04328         12 GMDEILYGGI-------PERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEH----PVQVRRNMAQFGWD   77 (250)
T ss_pred             HHHHHCCCCC-------CCCEEEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECC----HHHHHHHHHHCCCC
T ss_conf             6787515998-------79969999828999989999999999987-6997799997279----99999999980998


No 87 
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.80  E-value=0.00076  Score=49.54  Aligned_cols=170  Identities=19%  Similarity=0.271  Sum_probs=102.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH----------------HHHHHC-CC---CCCCC
Q ss_conf             89962344333468899999999861489507820542210047799----------------998510-34---74222
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL----------------RYLGEQ-IQ---VDTLE  161 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL----------------~~~a~~-~~---v~~~~  161 (461)
                      +|.++|=-|+||||-+|=||..+..+++++|++|-||- -++=.+||                +..... -+   .++|.
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk   80 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK   80 (255)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-CCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             69996599765899999999999864895499994899-99907762999987553008999999861478999553001


Q ss_pred             CC-------------------------C--CC---HHH-HHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHHHHHHH
Q ss_conf             33-------------------------2--10---368-9999999999741588699833-442221124689999998
Q gi|254780711|r  162 VI-------------------------P--EQ---SPE-KIAIRATQSARDGGYDAVILDT-AGRNHINDSLMQEISEIK  209 (461)
Q Consensus       162 ~~-------------------------~--~~---dp~-~i~~~a~~~a~~~~~D~iiiDT-aGR~~~d~~lm~El~~i~  209 (461)
                      ..                         .  ++   =|+ ..+++-+++...+.||+||||| ||           ++.+.
T Consensus        81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAG-----------iEHfg  149 (255)
T COG3640          81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAG-----------IEHFG  149 (255)
T ss_pred             CCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC-----------HHHHC
T ss_conf             3754335169885006880079952556799743162789999999997516674899963345-----------66656


Q ss_pred             HHC--CCCCCCCCCCHHCCHHHHHHHHHHHHH---CCCC--CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC
Q ss_conf             513--851100031011122568888988763---5844--077641157663303677788847873026158672321
Q gi|254780711|r  210 SLT--NPHEILLVADALTGQDAVHLARNFDKI---VDLT--GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL  282 (461)
Q Consensus       210 ~~~--~p~e~~lV~da~~Gq~a~~~a~~F~~~---~~i~--giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl  282 (461)
                      +-+  .-|-++.|+|...  .++..|+.+.+-   +++-  .+|+.|.|..   ...+.. .....-.-++|       .
T Consensus       150 Rg~~~~vD~vivVvDpS~--~sl~taeri~~L~~elg~k~i~~V~NKv~e~---e~~~~~-~~~~~~~~vlg-------~  216 (255)
T COG3640         150 RGTIEGVDLVIVVVDPSY--KSLRTAERIKELAEELGIKRIFVVLNKVDEE---EELLRE-LAEELGLEVLG-------V  216 (255)
T ss_pred             CCCCCCCCEEEEEECCCH--HHHHHHHHHHHHHHHHCCCEEEEEEEECCCH---HHHHHH-HHHCCCCEEEE-------E
T ss_conf             563257877999957877--8888899999999871875499999503411---577776-53227974899-------7


Q ss_pred             CCCCHHHHHHHHHC
Q ss_conf             00136889987735
Q gi|254780711|r  283 ENFFPDRIANRILG  296 (461)
Q Consensus       283 e~F~p~~~~~riLG  296 (461)
                      -|+||+-+-.-+-|
T Consensus       217 iP~d~~v~~~dl~G  230 (255)
T COG3640         217 IPYDPEVVEADLKG  230 (255)
T ss_pred             CCCCHHHHHCCCCC
T ss_conf             16987887422568


No 88 
>PRK11670 putative ATPase; Provisional
Probab=97.78  E-value=0.002  Score=46.39  Aligned_cols=173  Identities=18%  Similarity=0.216  Sum_probs=87.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCC---------C------CCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             998999999999999987187742100---------0------25884189962-3443334688999999998614895
Q gi|254780711|r   68 IQPGQMVIKIVHDELVEVLGKESIELD---------L------NAPSPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKK  131 (461)
Q Consensus        68 ~~~~~~i~kiv~~eL~~lLg~~~~~l~---------~------~~~~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~k  131 (461)
                      ....+.+.+-+.+.|..+-+-....+.         .      -++-.+||... |==|+||||+++-||.-|.+ .|+|
T Consensus        60 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vIAVaSGKGGVGKSTvavNLA~ALA~-~G~k  138 (369)
T PRK11670         60 NSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAA-EGAK  138 (369)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCC
T ss_conf             887999999999999857897458999974045645556678888868899998589988899999999999996-6993


Q ss_pred             EEEECCCCCCCHHHHHHHHHH------H--------CCCCCCCCC---CCCCHHH----HHHHHHHHHHHH----CCCCE
Q ss_conf             078205422100477999985------1--------034742223---3210368----999999999974----15886
Q gi|254780711|r  132 ILMASLDVHRPAAQEQLRYLG------E--------QIQVDTLEV---IPEQSPE----KIAIRATQSARD----GGYDA  186 (461)
Q Consensus       132 V~lv~~Dt~R~aA~eQL~~~a------~--------~~~v~~~~~---~~~~dp~----~i~~~a~~~a~~----~~~D~  186 (461)
                      |+++-+|.|=|..-.-|-.-.      +        ..++.+.+.   ....+|.    ..+..++..+..    ..+|+
T Consensus       139 VgllDADi~Gpsip~mlG~~~~~~~~~d~~~i~P~~~~gi~~~S~g~l~~~~~~~iwRgp~~~~al~q~l~~~~wg~lDy  218 (369)
T PRK11670        139 VGILDADIYGPSIPTMLGAENQRPTSPDGTHMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY  218 (369)
T ss_pred             EEEEECCCCCCCCCHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf             78982478887650230665456646889663760005812530220237664022213016799999877743378888


Q ss_pred             EEEECC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCCHHHHHHHHHHHH-HCCCCCEEEE
Q ss_conf             998334-4222112468999999851385110003101--112256888898876-3584407764
Q gi|254780711|r  187 VILDTA-GRNHINDSLMQEISEIKSLTNPHEILLVADA--LTGQDAVHLARNFDK-IVDLTGIILT  248 (461)
Q Consensus       187 iiiDTa-GR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~Gq~a~~~a~~F~~-~~~i~giIlT  248 (461)
                      +|||++ |-.  |..     -.+...+..+..++|.--  ..=.||.....-|++ .+++-|+|-.
T Consensus       219 LIID~PPGtg--Di~-----Ltl~q~v~~~gavvVTTPq~~Al~Da~k~i~m~~k~~vpilGiVeN  277 (369)
T PRK11670        219 LVLDMPPGTG--DIQ-----LTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVEN  277 (369)
T ss_pred             EEEECCCCCC--HHH-----HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9983799875--277-----7887645766079962773769999999999998548885068863


No 89 
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=97.78  E-value=0.00017  Score=54.46  Aligned_cols=146  Identities=26%  Similarity=0.263  Sum_probs=77.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH------------HHHHHHHHHC------------CCC
Q ss_conf             8996234433346889999999986148950782054221004------------7799998510------------347
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA------------QEQLRYLGEQ------------IQV  157 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA------------~eQL~~~a~~------------~~v  157 (461)
                      -|.+.|==|+|||||++-||+-|.. .|+||++|-||-.-...            .+-|+.....            -++
T Consensus         3 ~iaiyGKGGVGKSTTt~NLaAALA~-~GkkVL~IgcDPk~dsT~~l~gg~~~~tvld~l~~~~~~~~~l~~v~~~g~~gv   81 (273)
T PRK13232          3 QIAIYGKGGIGKSTTTQNLTAALST-MGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGDI   81 (273)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHEEECCCCCE
T ss_conf             7999799866588789999999997-799699989788442777885899888799999861856563666154288973


Q ss_pred             CCCCCCC---C---CHHHHHH-HHHHHHH--HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--C
Q ss_conf             4222332---1---0368999-9999999--7415886998334422211246899999985138511000310111--2
Q gi|254780711|r  158 DTLEVIP---E---QSPEKIA-IRATQSA--RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--G  226 (461)
Q Consensus       158 ~~~~~~~---~---~dp~~i~-~~a~~~a--~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--G  226 (461)
                      .++....   +   .....+. .+-++..  -...+|+||+|+.|-..-..--| -+    +.--.+|+++|..+-.  =
T Consensus        82 ~cve~ggp~~g~gcagrgii~~~~lle~l~~~~~~~Dyvl~Dvlgdvvcggfa~-P~----~~~~A~evlIVts~E~~sl  156 (273)
T PRK13232         82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAM-PI----REGKAKEIYIVASGELMAI  156 (273)
T ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCC-CC----CCCCCCEEEEEECCCHHHH
T ss_conf             898689987676545304788888999708321479889994147332365314-42----0165768999807608889


Q ss_pred             HHHHHH---HHHHHH-HCCCCCEEEEECCCC
Q ss_conf             256888---898876-358440776411576
Q gi|254780711|r  227 QDAVHL---ARNFDK-IVDLTGIILTRMDGD  253 (461)
Q Consensus       227 q~a~~~---a~~F~~-~~~i~giIlTKlD~~  253 (461)
                      +.|.++   .+.|.+ ...+.|+|.+..+.+
T Consensus       157 yaannI~k~i~~~~~~~~rl~GiI~n~r~~~  187 (273)
T PRK13232        157 YAANNICKGLAKFAKGGARLGGIICNSRNVD  187 (273)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             9999999999999621885014885055776


No 90 
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77  E-value=0.0067  Score=42.33  Aligned_cols=220  Identities=20%  Similarity=0.250  Sum_probs=114.5

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCCHHHH
Q ss_conf             884189962344333468899999999861--48-950782054221004779999851034742223----32103689
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTL--KK-KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV----IPEQSPEK  170 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~--~~-~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~  170 (461)
                      .-++-+||.|+.|+|||||+-=||.-+--.  .+ ..+-.--|..     -+.-+...+--.++|+..    ..+-|-+.
T Consensus        43 ~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~-----c~~c~~i~~~~~~d~~e~daas~~~v~~~r  117 (600)
T PRK09111         43 RIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGV-----GEHCQAIMEGRHVDVIEMDAASHTGVDDIR  117 (600)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf             842047645789878999999999996698876668998898998-----865898866899875885155457888999


Q ss_pred             HHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HH----HHHHHHHHH-------
Q ss_conf             9999999997-4158869983344222112468999999851385110003101112-25----688889887-------
Q gi|254780711|r  171 IAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QD----AVHLARNFD-------  237 (461)
Q Consensus       171 i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~----a~~~a~~F~-------  237 (461)
                      -..+.+.|+- ...|-|.|||-.-.+....  +.-|-+..+.- |.++.|++ |||- +.    .+.-.+.|+       
T Consensus       118 ~~~~~~~~~p~~~~~kv~iidevhmls~~a--fnallktleep-p~~~~fi~-att~~~k~p~ti~src~~f~~~~~~~~  193 (600)
T PRK09111        118 EIIESVRYRPVSARYKVYIIDEVHMLSTAA--FNALLKTLEEP-PPHVKFIF-ATTEIRKVPVTVLSRCQRFDLRRIEAE  193 (600)
T ss_pred             HHHHHHCCCCCCCCEEEEEEECCCCCCHHH--HHHHHHHHHCC-CCCEEEEE-ECCCHHHCCHHHHHHHHEECCCCCCHH
T ss_conf             999860538877754699960011057999--99999876259-86549999-628534375899854412010579999


Q ss_pred             ------------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHH
Q ss_conf             ------------635844----0776411576633036777888478730261586723210013688998773586278
Q gi|254780711|r  238 ------------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVV  301 (461)
Q Consensus       238 ------------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~  301 (461)
                                  +.+.++    .+|...-+|+.|  -|||+-...   |.| |.| +++       ..-+..+||+-|--
T Consensus       194 ~~~~~l~~i~~~e~~~~~~~al~~ia~~a~GS~R--DaLSlLDQa---i~~-~~~-~i~-------~~~v~~mLGl~d~~  259 (600)
T PRK09111        194 VLAAHLARIAEKEGVEVEPDALALIARAAEGSVR--DGLSLLDQA---IAH-GAG-EVT-------AEQVRDMLGLADRA  259 (600)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC--HHHHHHHHH---HHC-CCC-CCC-------HHHHHHHHCCCCHH
T ss_conf             9999999999860768667799999997489842--189999999---972-798-756-------99999986887677


Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHCCCCCH----HHHHHHHHHH
Q ss_conf             89998742112678--998886531046379----9999999998
Q gi|254780711|r  302 SLVEKAARNLNEKQ--AALTAKKIAKGKFDL----EDLAEQFRQT  340 (461)
Q Consensus       302 ~l~e~~~~~~d~~~--~~~l~~k~~~g~F~l----~Df~~Ql~~i  340 (461)
                      .+++-.+..++.+.  +-...+++...-.+.    +||++-+..+
T Consensus       260 ~i~~Ll~~i~~Gd~~~aL~~~~~l~~~G~Dp~~iL~dLLeilh~i  304 (600)
T PRK09111        260 RVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLRDLAEFVHLV  304 (600)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             899999999855868899999999985989999999999999999


No 91 
>cd01878 HflX HflX subfamily.  A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily.  The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear.  HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.77  E-value=0.0004  Score=51.72  Aligned_cols=148  Identities=18%  Similarity=0.257  Sum_probs=78.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ  177 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~  177 (461)
                      +-| +|.+||..-+||+|-.-+|+.       .++.+ + |                  .|+-.    -||..   +.+.
T Consensus        40 g~p-~VaivG~PNvGKSTLlN~L~g-------~~~~v-~-~------------------~~~tT----~d~~~---~~i~   84 (204)
T cd01878          40 GIP-TVALVGYTNAGKSTLFNALTG-------ADVYA-E-D------------------QLFAT----LDPTT---RRLR   84 (204)
T ss_pred             CCC-EEEEECCCCCCHHHHHHHHHC-------CCCEE-E-C------------------CCCCC----CCCEE---EEEE
T ss_conf             998-799988999989999999948-------99634-1-5------------------67764----57636---6899


Q ss_pred             HHHHCCCCEEEEECCC-CCCCHHHHHHHHHH-HHHHCCCCCCCCCCCHHCC--HHHHHHHHHHHHHCCCCC----EEEEE
Q ss_conf             9974158869983344-22211246899999-9851385110003101112--256888898876358440----77641
Q gi|254780711|r  178 SARDGGYDAVILDTAG-RNHINDSLMQEISE-IKSLTNPHEILLVADALTG--QDAVHLARNFDKIVDLTG----IILTR  249 (461)
Q Consensus       178 ~a~~~~~D~iiiDTaG-R~~~d~~lm~El~~-i~~~~~p~e~~lV~da~~G--q~a~~~a~~F~~~~~i~g----iIlTK  249 (461)
                        ...++.++++|||| -.+...++.+.++. +..+...|-+++|+|+...  .+-..++..+-+.++...    ++++|
T Consensus        85 --~~~~~~i~l~DT~G~i~~~p~~lie~~~~tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NK  162 (204)
T cd01878          85 --LPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNK  162 (204)
T ss_pred             --ECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             --569977999836864467837899999999999973989999997998536677999999999806555760788867


Q ss_pred             CCCCCCCCHHHHHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf             1576633036777888478730261--586723210
Q gi|254780711|r  250 MDGDGRGGAALSMRTVTGKPIKAIG--TGEKINDLE  283 (461)
Q Consensus       250 lD~~akgG~als~~~~~~~PI~fig--~GE~~~dle  283 (461)
                      .|--... ...........|+.+|+  +|+.++.|.
T Consensus       163 iDl~~~~-~~~~~~~~~~~~~i~ISA~~g~Gid~L~  197 (204)
T cd01878         163 IDLLDDE-ELEERLEAGRPDAVFISAKTGEGLDELL  197 (204)
T ss_pred             CCCCCCH-HHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             0479957-5899997089987999886894999999


No 92 
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.76  E-value=0.00067  Score=49.98  Aligned_cols=115  Identities=23%  Similarity=0.209  Sum_probs=72.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHH--HHHHHHH
Q ss_conf             189962344333468899999999861489507820542210047799998510347422233210-3689--9999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEK--IAIRATQ  177 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~--i~~~a~~  177 (461)
                      .++++.|..|+||||.+.-+|.++..+.+++|++++..--  ..--..+.++...++|+.....+. +..+  -+.++..
T Consensus        20 ~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~--~~~~~~R~~a~~~~v~~~~i~~~~~~~~~~~~~~~~~~   97 (186)
T pfam03796        20 DLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMS--AEQLAERLLSSESRISSSKLRSGQLSDEDWERLAEAAG   97 (186)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC--HHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             1799996799987999999999999970996687547552--99999999998626765554125121679999999999


Q ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             9974158869983344222112468999999851385110003101
Q gi|254780711|r  178 SARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                      .  ..++.+.+.|+++. . -+++...++++....+++  ++|+|-
T Consensus        98 ~--~~~~~l~i~~~~~~-t-~~~i~~~i~~~~~~~~~~--~vvvDy  137 (186)
T pfam03796        98 E--LSEAPLYIDDTPGL-S-LSELRAQARRLKREHGLG--LIVIDY  137 (186)
T ss_pred             H--HHCCCEEEECCCCC-C-HHHHHHHHHHHHHHCCCC--EEEEEH
T ss_conf             9--85398688479999-8-999999999999855998--899748


No 93 
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=97.76  E-value=0.001  Score=48.60  Aligned_cols=38  Identities=32%  Similarity=0.443  Sum_probs=34.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             899623443334688999999998614895078205422
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      .|.+-|==|+|||||+.-||+-|.. .|+||++|-||-+
T Consensus         3 ~ia~yGKGGVGKTTTavNLAaALA~-~GkkVLlID~DPq   40 (292)
T PRK13230          3 QIAFYGKGGIGKSTTVCNLAAALSK-SGKKVIVVGCDPK   40 (292)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCC
T ss_conf             7999179985789899999999998-7995999776797


No 94 
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.72  E-value=0.00021  Score=53.76  Aligned_cols=163  Identities=20%  Similarity=0.272  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             99999999871877421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r   76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI  155 (461)
Q Consensus        76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~  155 (461)
                      ..+.++|.+++......-....  ...|+++|+.-+||.|-.=.|+    .   +..++|+                   
T Consensus       194 ~~l~~~i~~ll~~~~~g~~l~~--G~~v~i~G~PN~GKSSL~N~L~----~---~drAIVS-------------------  245 (445)
T PRK05291        194 EELIAELEKLLASAKQGELLRE--GLKVVIAGRPNVGKSSLLNALL----G---EERAIVT-------------------  245 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC--CCEEEEECCCCCCHHHHHHHHH----C---CCCEEEC-------------------
T ss_conf             9999999999999874178635--9869988999876899999985----7---8746731-------------------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHH-HHCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCHHHHH
Q ss_conf             474222332103689999999999-74158869983344222112468999---99985138511000310111225688
Q gi|254780711|r  156 QVDTLEVIPEQSPEKIAIRATQSA-RDGGYDAVILDTAGRNHINDSLMQEI---SEIKSLTNPHEILLVADALTGQDAVH  231 (461)
Q Consensus       156 ~v~~~~~~~~~dp~~i~~~a~~~a-~~~~~D~iiiDTaGR~~~d~~lm~El---~~i~~~~~p~e~~lV~da~~Gq~a~~  231 (461)
                      ++|      |..     +|.++.- .-+++-+.|+||||=-..+ +.++++   +....+-+.|-+++|+|+..+.+..+
T Consensus       246 ~ip------GTT-----RD~ie~~l~l~G~~v~l~DTAGiR~t~-d~IE~~GI~ra~~~~~~ADlil~v~D~s~~~~~~~  313 (445)
T PRK05291        246 DIA------GTT-----RDVIEEHINLDGIPLRLIDTAGIRETE-DEVEKIGIERSRKAIEEADLVLLVLDASEPLTEED  313 (445)
T ss_pred             CCC------CCC-----CCEEEEEEEECCEEEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCH
T ss_conf             899------974-----040223689999899999899766557-45889999999999983999999987998887225


Q ss_pred             HHHHHHHHCC--CCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEE--CCCCCCCCCCCCHH
Q ss_conf             8898876358--440776411576633036777888478730261--58672321001368
Q gi|254780711|r  232 LARNFDKIVD--LTGIILTRMDGDGRGGAALSMRTVTGKPIKAIG--TGEKINDLENFFPD  288 (461)
Q Consensus       232 ~a~~F~~~~~--i~giIlTKlD~~akgG~als~~~~~~~PI~fig--~GE~~~dle~F~p~  288 (461)
                      .  .+.+.+.  -.=+|++|.|=...        ...+.++.+|+  +|+.++.|...=.+
T Consensus       314 ~--~~~~~~~~~~~i~V~NK~DL~~~--------~~~~~~~i~iSak~g~Gi~~L~~~i~~  364 (445)
T PRK05291        314 K--EILEEFKNKPVIVVLNKADLTGE--------KIDGLPVIRISAKTGEGIDELEEALKQ  364 (445)
T ss_pred             H--HHHHHCCCCCEEEEEEHHHCCCC--------CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             9--99985179987999851204665--------347897599983788699999999999


No 95 
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=97.71  E-value=0.00031  Score=52.57  Aligned_cols=165  Identities=19%  Similarity=0.205  Sum_probs=85.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH------------HHHHHHHHHHCCC-----------CC
Q ss_conf             899623443334688999999998614895078205422100------------4779999851034-----------74
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA------------AQEQLRYLGEQIQ-----------VD  158 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a------------A~eQL~~~a~~~~-----------v~  158 (461)
                      -|.+.|==|+|||||++-||+.|.. .|+||++|.||-.--.            -.+.|+..++.+.           +.
T Consensus         3 ~iaiyGKGGVGKSTtt~NLaAALA~-~GkkVl~IgcDPk~dsT~~L~gg~~~~tvld~l~~~~~~~~ledvi~~g~~gi~   81 (274)
T PRK13235          3 KVAIYGKGGIGKSTTTQNTVAGLAE-MGKKVMVVGCDPKADSTRLLLGGLQQKTVLDTLREEGEDVELEDIIKEGYGNTR   81 (274)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHEEECCCCEE
T ss_conf             7999799855476789999999997-899799989898453667873899899789999862877677894431789818


Q ss_pred             CCCCC---CCC---H-HHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HC
Q ss_conf             22233---210---3-6899999999997----4158869983344222112468999999851385110003101--11
Q gi|254780711|r  159 TLEVI---PEQ---S-PEKIAIRATQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LT  225 (461)
Q Consensus       159 ~~~~~---~~~---d-p~~i~~~a~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~  225 (461)
                      ++...   ++-   . -...+.+-++...    ...+|+||+|..|-.--..     ...-.+..-.+|+++|..+  |.
T Consensus        82 cveaggp~pg~gcagrgii~~~~~L~~l~~~~~~~~~DyVl~DvLGdvvcgg-----Fa~pir~~~A~eV~IVts~E~~A  156 (274)
T PRK13235         82 CTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGG-----FAMPIRDGKAEEIYIVCSGEMMA  156 (274)
T ss_pred             EEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC-----CCCCCCCCCCCEEEEEECCCHHH
T ss_conf             9868998756675763152589999881775433577689981378531245-----11551006587899991683689


Q ss_pred             CHHHHHH---HHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHH
Q ss_conf             2256888---8988763--584407764115766330367778884787302
Q gi|254780711|r  226 GQDAVHL---ARNFDKI--VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKA  272 (461)
Q Consensus       226 Gq~a~~~---a~~F~~~--~~i~giIlTKlD~~akgG~als~~~~~~~PI~f  272 (461)
                      =..|-++   .+.|.+.  +.+.|+|++.-+.+..-..+=.....++.++..
T Consensus       157 L~aannI~k~i~~~~~~~~~~l~Gii~N~r~~~~~~~~v~~fa~~~g~~vi~  208 (274)
T PRK13235        157 MYAANNICKGILKYADAGGVRLGGLICNSRKVDNEREMIEELARKLGTQMIH  208 (274)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf             9999999999999974379548899973677875789999999974993699


No 96 
>KOG0923 consensus
Probab=97.71  E-value=0.00018  Score=54.33  Aligned_cols=124  Identities=23%  Similarity=0.325  Sum_probs=83.2

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH--HHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CCCC-----CC
Q ss_conf             88418996234433346889999999--986148950782054221004779999851034742-----2233-----21
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYH--LKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LEVI-----PE  165 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~--~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~~~-----~~  165 (461)
                      ....|+.++|-+||||||-+-..-+-  |.+ +|++  +.|+.-.|.||..--.-.|+.+||..     |+..     .+
T Consensus       278 ~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk-~gk~--IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSe  354 (902)
T KOG0923         278 KEHQVLIIVGETGSGKTTQIPQYLYEAGYTK-GGKK--IGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSE  354 (902)
T ss_pred             HHCCEEEEECCCCCCCCCCCCHHHHHCCCCC-CCCE--EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf             8670899975788986445628988542135-8946--740685068877799999998574014314448885035674


Q ss_pred             CHHHHHH------HHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf             0368999------9999999741588699833442221124-6899999985138511000310111
Q gi|254780711|r  166 QSPEKIA------IRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADALT  225 (461)
Q Consensus       166 ~dp~~i~------~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da~~  225 (461)
                      +...+..      ++-+.......|.|||||-|---....+ |+.=++.|.++ .||..+|+.+|+.
T Consensus       355 kTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~-RpdLKllIsSAT~  420 (902)
T KOG0923         355 KTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-RPDLKLLISSATM  420 (902)
T ss_pred             CEEEEEECCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEECCCC
T ss_conf             12243224306799871463422335999602432003456799987888750-8760477322226


No 97 
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.71  E-value=0.0055  Score=43.01  Aligned_cols=167  Identities=17%  Similarity=0.178  Sum_probs=84.0

Q ss_pred             HHHHCCCCCCCHHHHHH-HHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH--------HHHHH
Q ss_conf             98742888789899999-9999999998-52469699999999999998303111269989999999--------99999
Q gi|254780711|r   13 FQNITGKGSLSETDISN-TLREIRRTFL-EADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKI--------VHDEL   82 (461)
Q Consensus        13 ~~~l~~~~~l~e~~i~~-~l~ei~~aLL-eaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~ki--------v~~eL   82 (461)
                      .++|...+.-|-+++-. .-+|    |. ...++...|.++++.+++.+.-   ....+..+...+-        =..+|
T Consensus        20 ~~kL~~aG~~tv~~l~~~~~~~----L~~~~gis~~~a~ki~~~a~~~~~~---~~f~Ta~el~~~r~~~~~isTg~~~l   92 (318)
T PRK04301         20 AEKLREAGYDTVEAIAVASPKE----LSEIAGISESTAAKIIEAAREALDI---GGFETALEVLERRKSIGKITTGSKEL   92 (318)
T ss_pred             HHHHHHCCCCCHHHHHCCCHHH----HHHHHCCCHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHCCCCCCCCCHHH
T ss_conf             9999986995499987489999----9985099999999999999985365---79826999999863478247888788


Q ss_pred             HHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH---HHCC--CCEEEECC-CCCCCHHHHHHHHHHHCC-
Q ss_conf             9871877421000258841899623443334688999999998---6148--95078205-422100477999985103-
Q gi|254780711|r   83 VEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLK---TLKK--KKILMASL-DVHRPAAQEQLRYLGEQI-  155 (461)
Q Consensus        83 ~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~---~~~~--~kV~lv~~-Dt~R~aA~eQL~~~a~~~-  155 (461)
                      -.+|++.-.       .-.+.=++|..|+|||.-|-.||--.+   ..+|  .+|+.|.+ .+|||-=+.|+   |+.. 
T Consensus        93 D~lLgGGi~-------~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~peRi~qi---a~~~g  162 (318)
T PRK04301         93 DELLGGGIE-------TQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRPERIEQM---AEGLG  162 (318)
T ss_pred             HHHCCCCCC-------CCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCHHHHHHH---HHHHC
T ss_conf             805479833-------67078886688787035667767653376777898863799956898697999999---99849


Q ss_pred             --------CCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCC
Q ss_conf             --------47422233210368999999999974-158869983344222
Q gi|254780711|r  156 --------QVDTLEVIPEQSPEKIAIRATQSARD-GGYDAVILDTAGRNH  196 (461)
Q Consensus       156 --------~v~~~~~~~~~dp~~i~~~a~~~a~~-~~~D~iiiDTaGR~~  196 (461)
                              +|-++...+..+-..++....+.+.. ..+.+|+||..--+.
T Consensus       163 ~d~~~~L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~alf  212 (318)
T PRK04301        163 LDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGNNIKLVIVDSLTAHF  212 (318)
T ss_pred             CCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHE
T ss_conf             99789864026861399899999999999999627880499994342321


No 98 
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71  E-value=0.0035  Score=44.46  Aligned_cols=219  Identities=11%  Similarity=0.093  Sum_probs=116.7

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf             5884189962344333468899999999861489507820542210047799998510347422233210-368999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA  175 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a  175 (461)
                      .+-|+.++|+|+.|+||||++--||+.+--..+.  -.-.|..-     +.-+........+++.....+ .-++-+++-
T Consensus        35 ~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~--~~~PCg~C-----~sC~~i~~g~~~DviEidaasn~~VddIR~l  107 (560)
T PRK06647         35 NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP--TIMPCGEC-----FSCKSIDNDSSLDVIEIDGASNTSVQDVRQI  107 (560)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCC-----HHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf             9977436632899878999999999996599999--98888788-----7888874599987576436454888999999


Q ss_pred             HHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC-----------
Q ss_conf             99997----415886998334422211246899999985138511000310111225688889887635-----------
Q gi|254780711|r  176 TQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV-----------  240 (461)
Q Consensus       176 ~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~-----------  240 (461)
                      .+.+.    ..+|-|+|||-|-++..+.  ..-|.++.+.- |..++|++-++--+....++..=.+.+           
T Consensus       108 ~e~v~~~P~~~~yKV~IIDEahmLt~~A--~NALLKtLEEP-P~~~~FILaTte~~KI~~TI~SRCQ~f~Fk~i~~~~I~  184 (560)
T PRK06647        108 KEEIMFPPASSRYRVYIIDEVHMLSNSA--FNALLKTIEEP-PPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIY  184 (560)
T ss_pred             HHHHCCCCCCCCEEEEEECCHHHCCHHH--HHHHHHHHHCC-CCCEEEEEECCCHHHCHHHHHHHHEEEECCCCCHHHHH
T ss_conf             9986328766870699964656559999--99999986348-87559999779947684899965104105559999999


Q ss_pred             ------------CCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf             ------------844----0776411576633036777888478730261586723210013688998773586278899
Q gi|254780711|r  241 ------------DLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLV  304 (461)
Q Consensus       241 ------------~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~  304 (461)
                                  .++    .+|.-+-||+-|  -|||+-..   -|.| |.| +++       ..-+..+||.=|-..+.
T Consensus       185 ~~L~~I~~~E~i~~e~~AL~lIa~~a~Gs~R--Dalslldq---~i~~-~~~-~i~-------~~~v~~~lG~~~~~~~~  250 (560)
T PRK06647        185 EMLKKVCLEDDIKYEDEALKWIAYKSGGSVR--DAYTLFDQ---IVSF-SNS-DIT-------LEQIRSKMGLTSDEFLE  250 (560)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHC-CCC-CCC-------HHHHHHHHCCCCHHHHH
T ss_conf             9999999867988799999999997789588--89999999---9960-799-778-------99999986898889999


Q ss_pred             HHHHHHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             9874211267--8998886531046379999999999
Q gi|254780711|r  305 EKAARNLNEK--QAALTAKKIAKGKFDLEDLAEQFRQ  339 (461)
Q Consensus       305 e~~~~~~d~~--~~~~l~~k~~~g~F~l~Df~~Ql~~  339 (461)
                      +-+....+.+  ++-....++...-++.+.|++.+-.
T Consensus       251 ~l~~~i~~~d~~~~l~~~~~i~~~G~d~~~fl~~li~  287 (560)
T PRK06647        251 KLSSSILNKDLKELLCVLDAIFLSGVSVEQFLLDCIE  287 (560)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999469999999999999809999999999999


No 99 
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321   These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=97.71  E-value=0.00011  Score=56.07  Aligned_cols=119  Identities=17%  Similarity=0.217  Sum_probs=74.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      -||++|++|||||||+|=+--|+ ++ ++..-++|--       |-.+-+=..-..=+---+-|.|--+- .+|+.+|-.
T Consensus       129 LiLVTGPTGSGKSTTlAsmIDyI-N~-~~~~HIiTIE-------DPIEyvh~~~~sli~QREvG~DT~sF-~~ALraALR  198 (350)
T TIGR01420       129 LILVTGPTGSGKSTTLASMIDYI-NK-NKAGHIITIE-------DPIEYVHKNKRSLINQREVGLDTLSF-ANALRAALR  198 (350)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH-HC-CCCCCCEEEE-------CCEEEEECCCEEEEECCCCCCCHHHH-HHHHHHHHC
T ss_conf             38987688986789999999787-40-3888825631-------77314104770245436246754579-999768410


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCHHC-CHHHHHHHHHHHHHCC
Q ss_conf             158869983344222112468999999851385110-00310111-2256888898876358
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEI-LLVADALT-GQDAVHLARNFDKIVD  241 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~-~lV~da~~-Gq~a~~~a~~F~~~~~  241 (461)
                      +.=|||||   |       =|.-++.|.-++.--|+ +||+ ||. -++|+.....+=+.+|
T Consensus       199 eDPDvILi---G-------E~RD~ET~~~AL~AAETGHLV~-gTLHTnsA~~ti~RIid~FP  249 (350)
T TIGR01420       199 EDPDVILI---G-------EMRDLETVELALTAAETGHLVF-GTLHTNSAAKTIERIIDVFP  249 (350)
T ss_pred             CCCCEEEE---E-------CCCCHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHCCCC
T ss_conf             28988998---2-------5562789999998742131567-66664238887677742597


No 100
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=97.70  E-value=0.00087  Score=49.10  Aligned_cols=68  Identities=24%  Similarity=0.251  Sum_probs=48.5

Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             9998718774210002588418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r   81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT  159 (461)
Q Consensus        81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~  159 (461)
                      .|-++|++.-       .+.+++++.|..|+||||-+..+++.-..+.|.+|+.++++--    .+|+...+..++.++
T Consensus         7 ~LD~~l~GGi-------~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~----~~~l~~~~~~~g~~~   74 (231)
T pfam06745         7 GLDEILKGGI-------PEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEP----PEDLRENAKSFGWDL   74 (231)
T ss_pred             HHHHHCCCCC-------CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----HHHHHHHHHHCCCCH
T ss_conf             6886316998-------2996999985897259999999999999865896899981379----999999999829985


No 101
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=97.70  E-value=0.00075  Score=49.58  Aligned_cols=115  Identities=18%  Similarity=0.164  Sum_probs=74.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
                      |+++|+.+|||||.+..|+.++.. ++++|.+|+.|+.+..-            -++.....++..-...+.+++.+-.+
T Consensus         2 ivl~G~P~SGKSt~A~~L~~~l~~-~~~~v~vi~d~~~~~~~------------~~y~~s~~Ek~~R~~l~s~v~r~Ls~   68 (266)
T pfam08433         2 IILTGLPSSGKSTRAKELAKYLEE-KGYDVIVISDESLGIES------------DDYKDSKKEKFLRGSLRSAVKRDLSK   68 (266)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             798579999688999999999997-59938997800126753------------10001047899999999999875166


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf             588699833442221124689999998513851100031011122568888988763
Q gi|254780711|r  183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI  239 (461)
Q Consensus       183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~  239 (461)
                       -++||+|.   +.+=...--||--+.+...-....+-+++     ..+++..+++.
T Consensus        69 -~~iVIlD~---~NYiKG~RYEL~C~Ak~~~t~~c~v~~~~-----p~e~~~~~N~~  116 (266)
T pfam08433        69 -NTIVIVDS---LNYIKGFRYELYCIAKEAKTTYCVVYCKA-----PLDTCLKWNEE  116 (266)
T ss_pred             -CCEEEECC---CCCHHHHHHHHHHHHHHCCCCEEEEEECC-----CHHHHHHHHCC
T ss_conf             -88899548---74045689999999986388848999689-----98999986214


No 102
>COG4240 Predicted kinase [General function prediction only]
Probab=97.69  E-value=0.00048  Score=51.07  Aligned_cols=76  Identities=26%  Similarity=0.295  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf             99999999998718774210002588418996234433346889999999986148950782054221004779999
Q gi|254780711|r   74 VIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRY  150 (461)
Q Consensus        74 i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~  150 (461)
                      +.+++.+-...++.. -.+-....+.|.++-++|+|||||||+.+-|-..+..+++.+++-.+.|.|----.|||+.
T Consensus        25 ~~~~~~dl~Lpll~K-iap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~L  100 (300)
T COG4240          25 FAALAQDLHLPLLAK-IAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRL  100 (300)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHH
T ss_conf             889999987788986-4454421279639985268887653599999999997365306886645531043899999


No 103
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.69  E-value=0.00068  Score=49.91  Aligned_cols=144  Identities=17%  Similarity=0.187  Sum_probs=82.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf             1899623443334688999999998614895078205422100477999985103474222332103689999999999-
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA-  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a-  179 (461)
                      -+++++|..|+||||.+-+|+..+.. ....+..+. ++. ....|=|+.++..+|++.- ......-..-..+-+... 
T Consensus        44 g~~lltGe~GtGKTtllr~l~~~l~~-~~~~~~~i~-~~~-l~~~~ll~~i~~~lg~~~~-~~~~~~~~~~l~~~L~~~~  119 (269)
T TIGR03015        44 GFILITGEVGAGKTTLIRNLLKRLDQ-ERVVAAKLV-NTR-VDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIEQF  119 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC-CCEEEEEEC-CCC-CCHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHH
T ss_conf             65999729989889999999984593-454899976-999-9999999999998598988-9899999999999999999


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHH------HHHHHHHHCCCCCEEEEECCC
Q ss_conf             7415886998334422211246899999985138511000310111225688------889887635844077641157
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVH------LARNFDKIVDLTGIILTRMDG  252 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~------~a~~F~~~~~i~giIlTKlD~  252 (461)
                      .....=|+|||-|-.+  +.+.+++|+.+.+.-.....++.+ -..||.-.+      ..+.|.+.+.+ .+-+..|+.
T Consensus       120 ~~g~~~vliIDEAq~L--~~~~Le~Lr~L~n~e~~~~~ll~i-iL~GqpeL~~~L~~~~~~~l~qRI~~-~~~L~pl~~  194 (269)
T TIGR03015       120 AAGKRALLVVDEAQNL--TPELLEELRMLSNFQTDNAKLLQI-FLVGQPEFRETLQSPQLQQLRQRIIA-SCHLGPLDR  194 (269)
T ss_pred             HCCCCEEEEEECHHHC--CHHHHHHHHHHHCCCCCCCCCEEE-EEECCHHHHHHHCCCCHHHHHHCEEE-EEEECCCCH
T ss_conf             6699469997242219--999999999997013588870489-99578679998727402545550767-998479998


No 104
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68  E-value=0.0051  Score=43.23  Aligned_cols=226  Identities=16%  Similarity=0.221  Sum_probs=118.2

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHH
Q ss_conf             588418996234433346889999999986148--950782054221004779999851034742223321-03689999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK--KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIAI  173 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~--~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~~  173 (461)
                      ..-|+.+||.|+.|+|||||+-=+|+-+--...  ...-.-.|..     -+.-+.+...-.++++..... ..-++-++
T Consensus        40 ~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~-----c~~c~~i~~~~~~dv~EiDaas~~gv~~ir  114 (507)
T PRK06645         40 DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEK-----CTNCISFNNHNHPDIIEIDAASKTSVDDIR  114 (507)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf             996634774587997889999999999679998888998888888-----767899865899985996378888889999


Q ss_pred             HHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH-------
Q ss_conf             9999997----415886998334422211246899999985138511000310111225-----688889887-------
Q gi|254780711|r  174 RATQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD-------  237 (461)
Q Consensus       174 ~a~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~-------  237 (461)
                      +-++.+.    ...|-|.|||-+-.+..+  -+.-|.+..+.- |.++.|++ |+|--+     .+...+.|+       
T Consensus       115 ~l~~~~~~~p~~~~~kv~iidE~hmls~~--a~nallktlEep-p~~~~Fi~-atte~~kip~ti~srcq~f~~~~i~~~  190 (507)
T PRK06645        115 RIIESAEYKPLQGKHKIFIIDEVHMLSKG--AFNALLKTLEEP-PPHIIFIF-ATTEVQKIPATIISRCQRYDLRRLSFE  190 (507)
T ss_pred             HHHHHCCCCCCCCCEEEEEECCHHHCCHH--HHHHHHHHHHCC-CCCEEEEE-ECCCHHHCCHHHHHHCEEEEEECCCHH
T ss_conf             99863551787674358995214224899--999999974278-64438999-748536483788854327875459979


Q ss_pred             ------------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHE-ECCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf             ------------635844----077641157663303677788847873026-158672321001368899877358627
Q gi|254780711|r  238 ------------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAI-GTGEKINDLENFFPDRIANRILGMGDV  300 (461)
Q Consensus       238 ------------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fi-g~GE~~~dle~F~p~~~~~riLGmgD~  300 (461)
                                  +.+.++    .+|...-||+.|-  |||+-..   -|.|- +.|+.++       ..-|..+||.-|-
T Consensus       191 ~i~~~l~~i~~~E~~~~~~~al~~ia~~a~Gs~RD--alslldq---ai~~~~~~~~~I~-------~~~V~~MLGl~Dr  258 (507)
T PRK06645        191 EIFKLLEYITKQENLKADIEALRIIAYKSEGSARD--AVSILDQ---AASMSAKSDNIIS-------PQVINQMLGLVDL  258 (507)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH--HHHHHHH---HHHHHCCCCCCCC-------HHHHHHHHCCCCH
T ss_conf             99999999999768777789999999855998678--9999999---9997548987026-------9999998389985


Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHCCCCC----HHHHHHHHHHHHCC
Q ss_conf             88999874211267899--888653104637----99999999998511
Q gi|254780711|r  301 VSLVEKAARNLNEKQAA--LTAKKIAKGKFD----LEDLAEQFRQTQKI  343 (461)
Q Consensus       301 ~~l~e~~~~~~d~~~~~--~l~~k~~~g~F~----l~Df~~Ql~~i~km  343 (461)
                      -.+++-.+..++.+..+  .....+-..-.+    ++||++-+..+.+.
T Consensus       259 s~lidL~e~Il~Gd~~kaL~~l~~iy~~G~Dp~~iL~DLLeiih~i~~i  307 (507)
T PRK06645        259 SVIIEFVEYIIERETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKV  307 (507)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             6799999999829999999999999984999999999999999999999


No 105
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=97.67  E-value=0.00024  Score=53.31  Aligned_cols=130  Identities=22%  Similarity=0.182  Sum_probs=69.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--------------HHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             62344333468899999999861489507820542210047799--------------9985103474222332103689
Q gi|254780711|r  105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--------------RYLGEQIQVDTLEVIPEQSPEK  170 (461)
Q Consensus       105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--------------~~~a~~~~v~~~~~~~~~dp~~  170 (461)
                      ++|+-||||||-|+.+..|+.. .+++|.+|.-|-   |+ |.+              +..-+..+.    .+.|.    
T Consensus         1 ViGpaGSGKTT~~~~l~~~l~~-~~r~~~vvNLDP---A~-e~~pY~~~iDIrd~i~~~dvM~~~~L----GPNGa----   67 (234)
T pfam03029         1 VVGGAGSGKTTFVGALSEILPL-RGRSVYVVNLDP---AA-ENLPYEADIDIRELITVADVMEDYGL----GPNGA----   67 (234)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCC---CC-CCCCCCCCCCHHHHCCHHHHHHHCCC----CCCHH----
T ss_conf             9898989889999999999997-799759997898---66-58999877717874679999998298----97389----


Q ss_pred             HHHHHHHHH----------HHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHH
Q ss_conf             999999999----------741588699833442221--12468999999851385110003101112256888898876
Q gi|254780711|r  171 IAIRATQSA----------RDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDK  238 (461)
Q Consensus       171 i~~~a~~~a----------~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~  238 (461)
                       .-.+++++          .+...|++|+||+|-...  -.+-+..+-+....- +--.++++|+.-=++..    .|-.
T Consensus        68 -li~~me~l~~~~d~l~~~l~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~-~~~~v~l~D~~~~~d~~----~fis  141 (234)
T pfam03029        68 -LTVAMDFGRITLDWLLEELEYEDDYYLFDTPGQIELFTHWDSLARGVEALEAS-RLGAVYLVDTRRLTDPI----DFFS  141 (234)
T ss_pred             -HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCC-CEEEEEEECHHHHCCHH----HHHH
T ss_conf             -99999999999999999852557769983698357654002699999997128-73899984257746888----8999


Q ss_pred             H----------CCC-CCEEEEECCCC
Q ss_conf             3----------584-40776411576
Q gi|254780711|r  239 I----------VDL-TGIILTRMDGD  253 (461)
Q Consensus       239 ~----------~~i-~giIlTKlD~~  253 (461)
                      .          +++ .=.++||.|--
T Consensus       142 ~~L~a~s~m~~l~lP~vnvlsK~Dl~  167 (234)
T pfam03029       142 GLLYALSIMLRLGLPFVVALNKFDLL  167 (234)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCHHCC
T ss_conf             99999999997489944310004135


No 106
>cd01886 EF-G Elongation factor G (EF-G) subfamily.  Translocation is mediated by EF-G (also called translocase).  The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA.  This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule.  EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit.  The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit.  To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it.  The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well.  The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site.  This group conta
Probab=97.66  E-value=0.00039  Score=51.78  Aligned_cols=214  Identities=19%  Similarity=0.166  Sum_probs=104.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC-CCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9962344333468899999999861489507820-5422-1004779999851034742223321036899999999997
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS-LDVH-RPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~-~Dt~-R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
                      |.++|-.|+||||-+-.|.+.-.. =. +.+=|. ..|. -.-..|+-+      ++.+...             +-.+.
T Consensus         2 iai~gH~gaGKTtL~EalL~~ag~-i~-r~G~v~~g~tv~D~~~eE~~R------~isi~~~-------------~~~~~   60 (270)
T cd01886           2 IGIIAHIDAGKTTTTERILYYTGR-IH-KIGEVHGGGATMDFMEQERER------GITIQSA-------------ATTCF   60 (270)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCC-CC-CCCEECCCCCCCCCCHHHHHC------CCEEECC-------------EEEEE
T ss_conf             899968999988999999986687-35-581553897556684889876------8707336-------------68999


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHH--HHCCC-CCEEEEECCC-CCCC
Q ss_conf             415886998334422211246899999985138511000310111225688889887--63584-4077641157-6633
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFD--KIVDL-TGIILTRMDG-DGRG  256 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~--~~~~i-~giIlTKlD~-~akg  256 (461)
                      -+++-+-||||+|-.    +-..|...-.+++  |-.++|+||..|=++.. -+.|+  +..++ .=++++|||- .+..
T Consensus        61 w~~~~inliDTPG~~----DF~~e~~~aL~~~--D~AviVv~a~~GVe~~T-~~~w~~~~~~~lP~i~fINKmDre~ad~  133 (270)
T cd01886          61 WKDHRINIIDTPGHV----DFTIEVERSLRVL--DGAVAVFDAVAGVEPQT-ETVWRQADRYNVPRIAFVNKMDRTGADF  133 (270)
T ss_pred             ECCEEEEEEECCCCH----HHHHHHHHHHHHH--CEEEEEEECCCCHHHHH-HHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf             899899998696967----8899999998775--55999984676442636-9999889984999899998878778871


Q ss_pred             CHHH-HHHHHHCCCHHH----EECCCCC---CCCC-----CCCHHH---HHHHHHCCCCHHHHHHHHHHHHHHH---HHH
Q ss_conf             0367-778884787302----6158672---3210-----013688---9987735862788999874211267---899
Q gi|254780711|r  257 GAAL-SMRTVTGKPIKA----IGTGEKI---NDLE-----NFFPDR---IANRILGMGDVVSLVEKAARNLNEK---QAA  317 (461)
Q Consensus       257 G~al-s~~~~~~~PI~f----ig~GE~~---~dle-----~F~p~~---~~~riLGmgD~~~l~e~~~~~~d~~---~~~  317 (461)
                      -..| ++...++.++.-    ||.|+..   =||-     .|+++.   ....=+ =.+....++.+.+.+-|.   ..+
T Consensus       134 ~~~l~~i~~~lg~~~vp~~~Pig~g~~f~GvvDll~~ka~~y~~~~~~~~~~~~i-P~~~~~~~~~~r~~L~E~vae~Dd  212 (270)
T cd01886         134 FRVVEQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEI-PEDLLEEAEEAREELIETLAEFDD  212 (270)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECC-CHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             6689999998589738898563278974799977878799841789972378137-456689999999988988861489


Q ss_pred             HHHHHH-HCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             888653-1046379999999999851148
Q gi|254780711|r  318 LTAKKI-AKGKFDLEDLAEQFRQTQKIGG  345 (461)
Q Consensus       318 ~l~~k~-~~g~F~l~Df~~Ql~~i~kmG~  345 (461)
                      ++++|. ..+.++.+++.+-++.--.-|.
T Consensus       213 eLmekyle~~~l~~~el~~~l~~a~~~g~  241 (270)
T cd01886         213 ELMEKYLEGEEITEEEIKAAIRKGTIANK  241 (270)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999757899999999999999997695


No 107
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.66  E-value=0.00044  Score=51.35  Aligned_cols=144  Identities=17%  Similarity=0.172  Sum_probs=96.7

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH---HHHH
Q ss_conf             0258841899623443334688999999998614895078205422100477999985103474222332103---6899
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQS---PEKI  171 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~d---p~~i  171 (461)
                      +...+-.++=+++-.||||||.+-+....++.  ..++++|..|.+-.--.+.++.    .|+|.+....+..   -+..
T Consensus        99 f~~~gv~~lNl~sSPGSGKTtLLe~ti~~L~~--~~~~aVIeGD~~T~~DA~RI~~----~Gv~avQInTG~~CHLDA~M  172 (290)
T PRK10463         99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKD--SVPCAVIEGDQQTVNDAARIRA----TGTPAIQVNTGKGCHLDAQM  172 (290)
T ss_pred             HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHH----CCCCEEEECCCCCCCCCHHH
T ss_conf             99879189993069987889999999998733--6757999604235667999997----69958995479976759999


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             999999997415886998334422211246899999985138511000310111225-6888898876358440776411
Q gi|254780711|r  172 AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-AVHLARNFDKIVDLTGIILTRM  250 (461)
Q Consensus       172 ~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-a~~~a~~F~~~~~i~giIlTKl  250 (461)
                      +.+|+..+.....|+++|.-.|-+---.+        ++ +-.+..+.|++-+-|-| -..--..|..+   +-+|+||.
T Consensus       173 V~~al~~l~l~~~dllfIENVGNLVCPA~--------FD-LGE~~kVvvlSVtEGeDKPlKYP~mF~~a---d~vlinKi  240 (290)
T PRK10463        173 IADAAPRLPLDDNGILFIENVGNLVCPAS--------FD-LGEKHKVAVLSVTEGEDKPLKYPHMFAAA---SLMLLNKV  240 (290)
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCCCCCCC--------CC-CCCCEEEEEEEECCCCCCCCCCHHHHHHC---CEEEEEHH
T ss_conf             99999848987798999812788435512--------03-67761799997068888644476676425---78998656


Q ss_pred             CCCCCC
Q ss_conf             576633
Q gi|254780711|r  251 DGDGRG  256 (461)
Q Consensus       251 D~~akg  256 (461)
                      |=-.-.
T Consensus       241 DLlp~~  246 (290)
T PRK10463        241 DLLPYL  246 (290)
T ss_pred             HHHHHC
T ss_conf             512202


No 108
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily.  Translocation is mediated by EF-G (also called translocase).  The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA.  This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule.  EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit.  The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G.  On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit.  To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it.  The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well.  The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site.  This group
Probab=97.66  E-value=0.00047  Score=51.14  Aligned_cols=204  Identities=23%  Similarity=0.350  Sum_probs=107.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-----HHHHH
Q ss_conf             9962344333468899999999861489507820542210047799998510347422233210368999-----99999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA-----IRATQ  177 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~-----~~a~~  177 (461)
                      |.++|-.|+||||.+-.|.++-..            +-|+|.++.=.+.++            .+|.+..     .-++-
T Consensus         2 i~iigH~~aGKTtL~E~lL~~~g~------------i~~~G~V~~g~t~~D------------~~~~E~~RgiSi~s~~~   57 (268)
T cd04170           2 IALVGHSGSGKTTLAEALLYATGA------------IDRLGSVEDGTTVSD------------YDPEEIKRKMSISTSVA   57 (268)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCC------------CCCCCCCCCCCCCCC------------CCHHHHHCCCCEECCEE
T ss_conf             899908999989999999996699------------665765458973577------------87889867967513557


Q ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             997415886998334422211246899999985138511000310111225-----688889887635844077641157
Q gi|254780711|r  178 SARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFDKIVDLTGIILTRMDG  252 (461)
Q Consensus       178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~~~~~i~giIlTKlD~  252 (461)
                      .+.-+++-+=||||+|-    .+-..|...-.+++  |-.++|+||..|-+     ..++++.++  +| .=+.++|||-
T Consensus        58 ~~~w~~~~inliDTPG~----~DF~~e~~~aL~v~--D~Av~Vida~~GVe~~T~~~w~~~~~~~--iP-~i~fINKmDr  128 (268)
T cd04170          58 PLEWKGHKINLIDTPGY----ADFVGETRAALRAA--DAALVVVSAQSGVEVGTEKLWEFADEAG--IP-RIIFINKMDR  128 (268)
T ss_pred             EEEECCEEEEEEECCCC----HHHHHHHHHHHCCC--CEEEEEECCCCCHHHHHHHHHHHHHHCC--CC-EEEEEECCCC
T ss_conf             88889979999869897----57999999984047--8399994187547687999999999859--99-8999978787


Q ss_pred             -CCCCCHHH-HHHHHHCCCHHH----EECCCCC---CCCC-----CCC----------HHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             -66330367-778884787302----6158672---3210-----013----------6889987735862788999874
Q gi|254780711|r  253 -DGRGGAAL-SMRTVTGKPIKA----IGTGEKI---NDLE-----NFF----------PDRIANRILGMGDVVSLVEKAA  308 (461)
Q Consensus       253 -~akgG~al-s~~~~~~~PI~f----ig~GE~~---~dle-----~F~----------p~~~~~riLGmgD~~~l~e~~~  308 (461)
                       .|..-.+| ++....+.++.-    ||.|+..   =||-     .|+          |+....+...+  -..|+|.+.
T Consensus       129 ~~ad~~~~l~~i~~~lg~~~vp~~~Pig~g~~f~GvvDl~~~~a~~~~~~~~~~~~~ip~~~~~~~~~~--r~~L~E~va  206 (268)
T cd04170         129 ERADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEA--REELLEAVA  206 (268)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCEECCCCHHHHHHHHHH--HHHHHHHHH
T ss_conf             899647799999998689849999665268871488766667799923999722705977888889999--888898887


Q ss_pred             HHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf             211267899888653-10463799999999998511488
Q gi|254780711|r  309 RNLNEKQAALTAKKI-AKGKFDLEDLAEQFRQTQKIGGI  346 (461)
Q Consensus       309 ~~~d~~~~~~l~~k~-~~g~F~l~Df~~Ql~~i~kmG~l  346 (461)
                      +    . .+++++|. ..+.++-+++..-++.--.-|.+
T Consensus       207 e----~-Dd~L~ekyle~~~l~~~el~~~l~~~~~~g~~  240 (268)
T cd04170         207 E----T-DDELMEKYLEGGELTEEELHAGLRRALRAGLL  240 (268)
T ss_pred             H----C-CHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             4----3-89999998678998999999999999985958


No 109
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=97.65  E-value=0.0015  Score=47.27  Aligned_cols=145  Identities=26%  Similarity=0.275  Sum_probs=80.9

Q ss_pred             CEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-------------HHHHHHHHH---------CCC
Q ss_conf             4189962-34433346889999999986148950782054221004-------------779999851---------034
Q gi|254780711|r  100 PLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA-------------QEQLRYLGE---------QIQ  156 (461)
Q Consensus       100 p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA-------------~eQL~~~a~---------~~~  156 (461)
                      .++|-++ |==|+||||++|-|+..+...++++|+++-+|..-+.=             .+=|+..+.         .-|
T Consensus         2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g   81 (262)
T COG0455           2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG   81 (262)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHCCCCHHHEEEECCCCC
T ss_conf             78999984588756898998699999964897699996588887288885888885509999707787768023157689


Q ss_pred             CCCCCCCCCCHHHHHH-------HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-C-H
Q ss_conf             7422233210368999-------99999997415886998334422211246899999985138511000310111-2-2
Q gi|254780711|r  157 VDTLEVIPEQSPEKIA-------IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-G-Q  227 (461)
Q Consensus       157 v~~~~~~~~~dp~~i~-------~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-G-q  227 (461)
                      +.+.+..  .++....       ...++.. .+.+|+|+|||.+-++.+.     +..+..   -++.++|..-.. + +
T Consensus        82 l~vipg~--~~~~~~~~~~~~~~~~~~~~l-~~~~D~iliD~~aGl~~~~-----~~~~~~---sd~~viVt~pe~~si~  150 (262)
T COG0455          82 LYVLPGG--SGLEDLAKLDPEDLEDVIKEL-EELYDYILIDTGAGLSRDT-----LSFILS---SDELVIVTTPEPTSIT  150 (262)
T ss_pred             EEEEECC--CCHHHHHHCCHHHHHHHHHHH-HHCCCEEEEECCCCCCHHH-----HHHHHH---CCCEEEEECCCCCHHH
T ss_conf             8996078--876888616988899999998-7529999996899966888-----999873---6817999279852089


Q ss_pred             HHHHHHHH-HHHHCCCCC--EEEEECCCCCC
Q ss_conf             56888898-876358440--77641157663
Q gi|254780711|r  228 DAVHLARN-FDKIVDLTG--IILTRMDGDGR  255 (461)
Q Consensus       228 ~a~~~a~~-F~~~~~i~g--iIlTKlD~~ak  255 (461)
                      +|....+. .+...+..+  +|+.++++...
T Consensus       151 ~A~~~i~~~~~~~~~~~~~~vV~N~v~~~~e  181 (262)
T COG0455         151 DAYKTIKILSKLGLDLLGRRVVLNRVRSTKE  181 (262)
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf             9999999999738764331589970366665


No 110
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.65  E-value=0.00032  Score=52.39  Aligned_cols=143  Identities=23%  Similarity=0.311  Sum_probs=76.8

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-----------------EECCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             4189962344333468899999999861489507-----------------82054221004779999851034742223
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-----------------MASLDVHRPAAQEQLRYLGEQIQVDTLEV  162 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~-----------------lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~  162 (461)
                      +-.|.+.|..||||||-+.|+|..++. +|.+|+                 ++..+|-+-+..--  .-.....|.-|..
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~-~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~--~~~~~~rvGkY~V   81 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLRE-KGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILAR--VGFSRPRVGKYGV   81 (179)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEE--CCCCCCCCCEEEE
T ss_conf             459998679984589999999999985-5966513983114208827515999814795579888--4788762104786


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC
Q ss_conf             3210368999999999974158869983344222112468-999999851385110003101112256888898876358
Q gi|254780711|r  163 IPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLM-QEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD  241 (461)
Q Consensus       163 ~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm-~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~  241 (461)
                       .-.+.-.++-.+++.|... .|+||||--|-+.....-+ +++..+.+.-+|  .+.|+.-.   +--..++.+.+   
T Consensus        82 -~v~~le~i~~~al~rA~~~-aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp--liatlHrr---sr~P~v~~ik~---  151 (179)
T COG1618          82 -NVEGLEEIAIPALRRALEE-ADVIIIDEIGPMELKSKKFREAVEEVLKSGKP--LIATLHRR---SRHPLVQRIKK---  151 (179)
T ss_pred             -EHHHHHHHHHHHHHHHHHC-CCEEEEECCCCHHHCCHHHHHHHHHHHCCCCC--EEEEEECC---CCCHHHHHHHH---
T ss_conf             -2788899868999988634-99899943363302008899999999658993--79999625---67758998642---


Q ss_pred             CCCEEEEECCCCCCC
Q ss_conf             440776411576633
Q gi|254780711|r  242 LTGIILTRMDGDGRG  256 (461)
Q Consensus       242 i~giIlTKlD~~akg  256 (461)
                      ..++++- +|..-|.
T Consensus       152 ~~~v~v~-lt~~NR~  165 (179)
T COG1618         152 LGGVYVF-LTPENRN  165 (179)
T ss_pred             CCCEEEE-ECCCHHH
T ss_conf             4877999-7512156


No 111
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64  E-value=0.005  Score=43.32  Aligned_cols=219  Identities=14%  Similarity=0.132  Sum_probs=113.7

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHH
Q ss_conf             58841899623443334688999999998614895-0782054221004779999851034742223321-036899999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIAIR  174 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~~~  174 (461)
                      ..-|+..+|+|+.|+||||++--+|+.+--..... -..-.|+.-        +........+++..... ..-++-+++
T Consensus        35 ~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC--------~~I~~g~h~DviEIdaasn~gIDeIRe  106 (613)
T PRK05896         35 NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC--------ESINTNQSVDIVELDAASNNGVDEIRN  106 (613)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH--------HHHHCCCCCCEEEEECCCCCCHHHHHH
T ss_conf             997622775589984889999999999669999999988888789--------998569999868840655578899999


Q ss_pred             HHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH----HHHH---------
Q ss_conf             999997----41588699833442221124689999998513851100031011122568888----9887---------
Q gi|254780711|r  175 ATQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA----RNFD---------  237 (461)
Q Consensus       175 a~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a----~~F~---------  237 (461)
                      -++.+.    ..+|-|+|||.|-++..+..  .-|-++.+.- |..++|++=++--+.-..++    +.|+         
T Consensus       107 Lie~~~~~P~~gkyKV~IIDEah~Ln~~Aa--NALLKtLEEP-P~~viFIL~Ttep~KLLpTIlSRCQrf~Fkri~~~~I  183 (613)
T PRK05896        107 IIDNINYLPTTFKYKVYIIDEAHMLSTSAW--NALLKTLEEP-PKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSEL  183 (613)
T ss_pred             HHHHHCCCCCCCCCEEEEECCHHHCCHHHH--HHHHHHCCCC-CCCCEEEEEECCHHHCCHHHHHCCCCEECCCCCHHHH
T ss_conf             999708587579945999816221799999--9999853489-8783799982881549376640355001788998999


Q ss_pred             ----------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf             ----------635844----077641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r  238 ----------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL  303 (461)
Q Consensus       238 ----------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l  303 (461)
                                +.+.++    .+|...-||+-|  -|||+...   -+.| + +.+++       -.-+..++|.-|....
T Consensus       184 ~~~L~~I~~kE~i~ie~~AL~~Ia~~adGs~R--DAlslLdQ---~~~~-~-~~~it-------~~~v~~~~g~~~~~~~  249 (613)
T PRK05896        184 QELLKSIAKKEKIKIEDNAIDKIADLADGSLR--DGLSILDQ---LSTF-K-NKKID-------IEDINKTFGLVDNNKK  249 (613)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHH-C-CCCCC-------HHHHHHHHCCCCHHHH
T ss_conf             99999999973998789999999997688487--89889999---9983-5-68862-------9999999677768999


Q ss_pred             HHHHHHHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             99874211267--89988865310463799999999998
Q gi|254780711|r  304 VEKAARNLNEK--QAALTAKKIAKGKFDLEDLAEQFRQT  340 (461)
Q Consensus       304 ~e~~~~~~d~~--~~~~l~~k~~~g~F~l~Df~~Ql~~i  340 (461)
                      ++-.......+  +.-.+...+..--+++.-|..++-.+
T Consensus       250 ~~~~~~i~~~d~~~~~~~~~~~~~~g~~~~~~~~~li~~  288 (613)
T PRK05896        250 INLIELIQKNDIEELRNLINELESKGINFEAFCRDLINL  288 (613)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             999999985589999999999998067899999999999


No 112
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=97.64  E-value=0.00088  Score=49.05  Aligned_cols=82  Identities=20%  Similarity=0.206  Sum_probs=55.1

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      ++.||.|.|+.||||||-+-+|..+|.+ .+.+|.++-.|.+|.       .+...++   |   ...|-...++.....
T Consensus         1 kG~viW~TGLsGsGKTTlA~~l~~~L~~-~~~~~~~LDGD~~R~-------~l~~dlg---y---s~~~R~~n~~r~~~l   66 (157)
T pfam01583         1 RGCTVWFTGLSGSGKSTIANALERKLFA-QGISVYVLDGDNVRH-------GLNKDLG---F---SEEDRTENIRRIAEV   66 (157)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHC-------CCCCCCC---C---CHHHHHHHHHHHHHH
T ss_conf             9889998898999999999999999997-599779976887750-------1257779---8---989999999999999


Q ss_pred             HH--HCCCCEEEEECCCC
Q ss_conf             97--41588699833442
Q gi|254780711|r  179 AR--DGGYDAVILDTAGR  194 (461)
Q Consensus       179 a~--~~~~D~iiiDTaGR  194 (461)
                      |+  .+.-.+||+.+-.-
T Consensus        67 ak~l~~~g~~VIvs~isp   84 (157)
T pfam01583        67 AKLFADAGLIVITSFISP   84 (157)
T ss_pred             HHHHHCCCCEEEEECCCC
T ss_conf             999842896588721578


No 113
>KOG0922 consensus
Probab=97.64  E-value=0.00038  Score=51.87  Aligned_cols=154  Identities=20%  Similarity=0.290  Sum_probs=94.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH--HHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CC-----CCCCCHHH
Q ss_conf             8996234433346889999999--986148950782054221004779999851034742-----22-----33210368
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYH--LKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LE-----VIPEQSPE  169 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~--~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~-----~~~~~dp~  169 (461)
                      |+.++|-+||||||-+-++.+.  |.. .|+   ++++--.|.||+.=-+..|+..+..+     |.     ......-.
T Consensus        68 vlIviGeTGsGKSTQipQyL~eaG~~~-~g~---I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~Tri  143 (674)
T KOG0922          68 VLIVIGETGSGKSTQIPQYLAEAGFAS-SGK---IACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRI  143 (674)
T ss_pred             EEEEECCCCCCCCCCHHHHHHHCCCCC-CCC---EEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEE
T ss_conf             799984898985332769998626566-882---7750671677888999999985897676222699845667873369


Q ss_pred             ------HHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH--C
Q ss_conf             ------9999999999741588699833442221124-689999998513851100031011122568888988763--5
Q gi|254780711|r  170 ------KIAIRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI--V  240 (461)
Q Consensus       170 ------~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~--~  240 (461)
                            -+.++.+..--...|++||+|-|---+...+ |+.=|+++.+.- |+..+.|+.|+.  ||..-.+=|+.+  +
T Consensus       144 kymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimSATl--da~kfS~yF~~a~i~  220 (674)
T KOG0922         144 KYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMSATL--DAEKFSEYFNNAPIL  220 (674)
T ss_pred             EEECCHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEEEE--CHHHHHHHHCCCCEE
T ss_conf             99613599998850876454448998322310157889999999987327-783699992352--489999986479567


Q ss_pred             CCCC------EEEEECCCCCCCCHHHHH
Q ss_conf             8440------776411576633036777
Q gi|254780711|r  241 DLTG------IILTRMDGDGRGGAALSM  262 (461)
Q Consensus       241 ~i~g------iIlTKlD~~akgG~als~  262 (461)
                      .+-|      +..||-..+.--.+++-.
T Consensus       221 ~i~GR~fPVei~y~~~p~~dYv~a~~~t  248 (674)
T KOG0922         221 TIPGRTFPVEILYLKEPTADYVDAALIT  248 (674)
T ss_pred             EECCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             6668877556886368850467899999


No 114
>CHL00175 minD septum-site determining protein; Validated
Probab=97.63  E-value=0.00029  Score=52.74  Aligned_cols=152  Identities=18%  Similarity=0.272  Sum_probs=79.6

Q ss_pred             CCCCCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH--------------HHHHHH---HHH-
Q ss_conf             00025884189962-34433346889999999986148950782054221004--------------779999---851-
Q gi|254780711|r   93 LDLNAPSPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA--------------QEQLRY---LGE-  153 (461)
Q Consensus        93 l~~~~~~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA--------------~eQL~~---~a~-  153 (461)
                      .+.-++--.||.++ |==|+||||+++-||..+.. .|+||+++-+|.+-+..              .+-+..   +.+ 
T Consensus         6 ~~~~~~m~kiIaV~s~KGGVGKTT~a~NLa~aLA~-~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~   84 (279)
T CHL00175          6 MTIVATMTRIIVITSGKGGVGKTTTTANLGMSIAR-LGYRVALIDADIGLRNLDLLLGLENRVVYTAMEVLEGECRLDQA   84 (279)
T ss_pred             CHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf             31225988699997489984489999999999997-89988999578999987532686666667476640787664301


Q ss_pred             ------CCCCCCCCCCCCCHHHHHHHH----HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             ------034742223321036899999----9999974158869983344222112468999999851385110003101
Q gi|254780711|r  154 ------QIQVDTLEVIPEQSPEKIAIR----ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       154 ------~~~v~~~~~~~~~dp~~i~~~----a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                            .-++.+........-..+..+    -++....++||+|||||+.-+  +...+.-|      ...+++++|.-.
T Consensus        85 ~i~~~~~~~l~ll~~~~~~~~~~~~~~~~~~ll~~l~~~~yDyiiID~ppgl--~~~~~~al------~aad~viIvttp  156 (279)
T CHL00175         85 LIRDKRWPNLSLLPISKNRQRYNVTRKNMNMLVDSLKERNYDYILIDCPAGI--DVGFINAI------APAKEAIVVTTP  156 (279)
T ss_pred             EEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC--CHHHHHHH------HHCCEEEEECCC
T ss_conf             3425777877999789705445741999999999997279999998189988--89999999------978906997899


Q ss_pred             HC--CHHHHHHHHHHHH-HCCCCCEEEEECCCC
Q ss_conf             11--2256888898876-358440776411576
Q gi|254780711|r  224 LT--GQDAVHLARNFDK-IVDLTGIILTRMDGD  253 (461)
Q Consensus       224 ~~--Gq~a~~~a~~F~~-~~~i~giIlTKlD~~  253 (461)
                      -.  =.++....+.|+. .+..-++|+.+....
T Consensus       157 e~~al~da~~~i~~~~~~~~~~~~lvvN~~~~~  189 (279)
T CHL00175        157 EITAIRDADRVAGLLEANGIYNIKLLVNRVRPD  189 (279)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             789999999999999975998621353356455


No 115
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62  E-value=0.011  Score=40.80  Aligned_cols=216  Identities=17%  Similarity=0.185  Sum_probs=97.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEE-----EECCCCCCCHHHHHHHHHHHCCCCCCCCCC----CCCH
Q ss_conf             88418996234433346889999999986148-9507-----820542210047799998510347422233----2103
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKIL-----MASLDVHRPAAQEQLRYLGEQIQVDTLEVI----PEQS  167 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~-----lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~----~~~d  167 (461)
                      +-.+-+||.|+.|+||||++-=||+-+--.+. ..-+     +-.|+.        -+...+--.++++...    .+-|
T Consensus        36 r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~--------C~~i~~g~~~d~~EiDaas~~~v~  107 (721)
T PRK12323         36 RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRA--------CTEIDAGRFVDYIEMDAASNRGVD  107 (721)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH--------HHHHHCCCCCCEEEEECCCCCCHH
T ss_conf             975447502799888989999999997689986678987887877654--------687756898764774367678889


Q ss_pred             HHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-H----HHHHHHHHHH----
Q ss_conf             6899999999997-4158869983344222112468999999851385110003101112-2----5688889887----
Q gi|254780711|r  168 PEKIAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-Q----DAVHLARNFD----  237 (461)
Q Consensus       168 p~~i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q----~a~~~a~~F~----  237 (461)
                      -+.-..+.+.|+- ...|-|-|||-.-.+...  -+.-|-+..+.- |.++.|++ |+|- |    ..+..+..|+    
T Consensus       108 ~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~--afnalLKtlEeP-P~hv~Fil-aTT~~~Kip~TilSRc~~f~~~~~  183 (721)
T PRK12323        108 EMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNH--AFNAMLKTLEEP-PPHVKFIL-ATTDPQKIPVTVLSRCLQFNLKQM  183 (721)
T ss_pred             HHHHHHHHCCCCCCCCCEEEEEEECCCCCCHH--HHHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCC
T ss_conf             99999985455887664469998540005899--999999840179-75538999-438634485889877654234789


Q ss_pred             ---------------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             ---------------6358440----776411576633036777888478730261586723210013688998773586
Q gi|254780711|r  238 ---------------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMG  298 (461)
Q Consensus       238 ---------------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmg  298 (461)
                                     +.+.++.    +|--.-||+-|  -+||+..   --|.| |.|. +.       +.-+..+||.-
T Consensus       184 ~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~R--Dalslld---Qaia~-~~g~-~~-------~~~v~~mlg~~  249 (721)
T PRK12323        184 PPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMR--DALSLTD---QAIAY-SAGN-VS-------EEAVRGMLGAI  249 (721)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHH---HHHHH-CCCC-CC-------HHHHHHHHCCC
T ss_conf             9999999999999983997799999999997589647--6888999---99986-5896-26-------99999986888


Q ss_pred             CHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             2788999874211267899--8886531046379999999999
Q gi|254780711|r  299 DVVSLVEKAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQFRQ  339 (461)
Q Consensus       299 D~~~l~e~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql~~  339 (461)
                      |-..+++-++...+.+...  ...+.+.....+|..++.++-.
T Consensus       250 d~~~~~~ll~al~~~d~~~~~~~~~~~~~~~~d~~~~l~~l~~  292 (721)
T PRK12323        250 DQRYLVRLLDALAAEDGAAVLAIADEMADRSLSFAGALQDLAS  292 (721)
T ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             7789999999999558999999999999868899999999999


No 116
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348   This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.    In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance .   The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=97.61  E-value=0.00025  Score=53.17  Aligned_cols=215  Identities=22%  Similarity=0.255  Sum_probs=99.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             623443334688999999998614--895078205422100477999985103474222332103689999999999741
Q gi|254780711|r  105 LVGLQGSGKTTTTAKIAYHLKTLK--KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       105 lvGl~GsGKTTT~aKLA~~~~~~~--~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
                      |-|==||||||..|=.|-|+.. .  |+||+|||||=            |..+ -++|...-|.+|.+|.       .-+
T Consensus         2 ~gGKGGVGKTt~SaAtA~~lAe-~qPGkkvLl~STDP------------AHsL-~D~F~~e~G~~~~kv~-------g~e   60 (330)
T TIGR00345         2 FGGKGGVGKTTISAATAIRLAE-QQPGKKVLLVSTDP------------AHSL-SDVFEQELGHEPTKVK-------GVE   60 (330)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH-HCCCCEEEEEEECC------------CHHH-HHHHHHHHCCCCCEEE-------CCC
T ss_conf             7787882388899999999985-18997799984086------------0027-8861132177730320-------589


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--HH
Q ss_conf             5886998334422211246899999-98513851100031011122568888988763584407764115766330--36
Q gi|254780711|r  183 GYDAVILDTAGRNHINDSLMQEISE-IKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGG--AA  259 (461)
Q Consensus       183 ~~D~iiiDTaGR~~~d~~lm~El~~-i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG--~a  259 (461)
                      |--++=||-.-       -|+|.+. +.++..+..--+-++  .|..--+|++.-.- .+++|-|         .|  -+
T Consensus        61 NL~~~EIDp~~-------al~~y~~rvf~~~~~i~~~~~~~--~~~~l~~ql~~~~~-~dltGsi---------PGiDE~  121 (330)
T TIGR00345        61 NLSAVEIDPQA-------ALEEYRARVFKLKEQIKQNLSLG--VVDMLEDQLEGAAL-SDLTGSI---------PGIDEI  121 (330)
T ss_pred             CCEEEEECHHH-------HHHHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHHH-HHHCCCC---------CCHHHH
T ss_conf             85555103789-------99987999999999986067887--32027999998777-7522799---------858899


Q ss_pred             HHHHHHHCCCHHH--EECCCCCCCCCCCC--HHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             7778884787302--61586723210013--6889987735862788-99987421126789988865310463799999
Q gi|254780711|r  260 LSMRTVTGKPIKA--IGTGEKINDLENFF--PDRIANRILGMGDVVS-LVEKAARNLNEKQAALTAKKIAKGKFDLEDLA  334 (461)
Q Consensus       260 ls~~~~~~~PI~f--ig~GE~~~dle~F~--p~~~~~riLGmgD~~~-l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~  334 (461)
                      ++....++ -+..  .++||.+ |.=+||  |..-.=|+|.+..+.+ ++++.                           
T Consensus       122 ~~F~~~~k-~~~~~~~~e~ety-D~vIfDTAPTGHTLRLL~lP~~~~~~~~~~---------------------------  172 (330)
T TIGR00345       122 AAFDEFLK-HMDEAELNERETY-DVVIFDTAPTGHTLRLLQLPEVLSKFLEKF---------------------------  172 (330)
T ss_pred             HHHHHHHH-HHHHHHCCCCCCC-CEEEEECCCCHHHHHHHCCHHHHHHHHHHH---------------------------
T ss_conf             99999998-7654321567623-468871697467775310023679999874---------------------------


Q ss_pred             HHHHHHHCCCCHHHHH-HHHHCCCCCH--HHHHHCCCCHHHHHHHHHHHHCCCHHHHCC
Q ss_conf             9999985114889999-9873134423--432311167888889999974589878608
Q gi|254780711|r  335 EQFRQTQKIGGIGSIL-RMLPGMPSLK--QNIMPSSFDDKTINHHIAIIASMTKEERAN  390 (461)
Q Consensus       335 ~Ql~~i~kmG~l~~il-~miPG~~~~~--~~~~~~~~~e~~lk~~~aII~SMT~~Er~~  390 (461)
                        ++--++||+|-+++ ..||=||.-.  +...-.+.-+..=.+++++-+-||.-||-.
T Consensus       173 --~k~~~~~g~~~~~~~~~Lpf~G~~~~l~~~~~l~~~~e~Ke~~~~~~~~l~DP~~T~  229 (330)
T TIGR00345       173 --IKLREKLGPMLKLFKELLPFMGAGESLEDDEALEKLEELKEQIEAAREVLSDPERTS  229 (330)
T ss_pred             --HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             --356777889887664105789898878778999989999999999999724998516


No 117
>cd04168 TetM_like Tet(M)-like subfamily.  Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria.  Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site.  This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative.  Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G.  EF-G and Tet(M) compete for binding on the ribosomes.  Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind.  Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity.  These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.61  E-value=0.0047  Score=43.55  Aligned_cols=196  Identities=16%  Similarity=0.146  Sum_probs=103.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHH--HCCCCEEEECCCC-CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             996234433346889999999986--1489507820542-2100477999985103474222332103689999999999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKT--LKKKKILMASLDV-HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~--~~~~kV~lv~~Dt-~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      |.++|--|+||||.+-.|.+.-..  +.|+ |-  ...| -..-..|+-+...-...+                   -++
T Consensus         2 iai~gH~~~GKTtL~e~lL~~~g~i~r~G~-v~--~g~t~~D~~~eE~~r~isi~~~~-------------------~~~   59 (237)
T cd04168           2 IGILAHVDAGKTTLTESLLYTSGAIRKLGS-VD--KGTTRTDTMELERQRGITIFSAV-------------------ASF   59 (237)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCHHHHCCC-EE--CCCCCCCCHHHHHHHCCEEEEEE-------------------EEE
T ss_conf             899938998999999999996571222663-30--68303785499898487031058-------------------999


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHHHHHHCCCCCEEEEECCC-C
Q ss_conf             741588699833442221124689999998513851100031011122-----5688889887635844077641157-6
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARNFDKIVDLTGIILTRMDG-D  253 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~F~~~~~i~giIlTKlD~-~  253 (461)
                      .-+++.+-||||+|-    .+-..|...-.+++  |-.++|+||..|-     ....+++.++  +|. =+.++|||- .
T Consensus        60 ~~~~~~~n~iDtPG~----~dF~~e~~~al~~~--D~av~Vv~a~~Gv~~~t~~~~~~~~~~~--~P~-iifiNKmDre~  130 (237)
T cd04168          60 QWEDTKVNLIDTPGH----MDFIAEVERSLSVL--DGAILVISAVEGVQAQTRILWRLLRKLN--IPT-IIFVNKIDRAG  130 (237)
T ss_pred             EECCEEEEEEECCCC----HHHHHHHHHHHHHC--CCEEEEEECCCCCCCCHHHHHHHHHHCC--CCE-EEEEECCCCCC
T ss_conf             989987999889884----65666898897634--8169999658882234499999999859--985-99862445789


Q ss_pred             CCCCHHH-HHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             6330367-778884787302615867232100136889987735862788999874211267899888653104637999
Q gi|254780711|r  254 GRGGAAL-SMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTAKKIAKGKFDLED  332 (461)
Q Consensus       254 akgG~al-s~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~D  332 (461)
                      +..-..| ++....+..+..+..........  +.....         ..|+|.+-+    .....+++-+..+.++-++
T Consensus       131 adf~~~l~~i~~~l~~~~~p~~~p~~~~~~~--~~~~~~---------~~liE~vae----~DD~LlEkyLe~~elt~ee  195 (237)
T cd04168         131 ADLEKVYQEIKEKLSSDIVPMQKVGLAPNIC--ETNEID---------DEFWETLAE----GDDELLEKYLEGGPIEELE  195 (237)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCCCCCCC--CCCCCC---------HHHHHHHHC----CCHHHHHHHHCCCCCCHHH
T ss_conf             9999999999999789747677775556644--454410---------889998764----6999999885789867889


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999999985114
Q gi|254780711|r  333 LAEQFRQTQKIG  344 (461)
Q Consensus       333 f~~Ql~~i~kmG  344 (461)
                      +...++.--.-|
T Consensus       196 l~~~L~~~~~~g  207 (237)
T cd04168         196 LDNELSARIAKR  207 (237)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999999749


No 118
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.61  E-value=0.0008  Score=49.37  Aligned_cols=111  Identities=12%  Similarity=0.041  Sum_probs=63.4

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC-------------CC-C
Q ss_conf             841899623443334688999999998614895078205422100477999985103474222-------------33-2
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLE-------------VI-P  164 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~-------------~~-~  164 (461)
                      +.+++++.|..|+||||.+...+..-.++.|.+++.|+.+--    .+||..+++..+.++-.             .. .
T Consensus        23 ~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~----~~~l~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~   98 (501)
T PRK09302         23 KGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEES----PEDIIRNVASFGWDLQKLIDEGKLFILDASPDPS   98 (501)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCC
T ss_conf             997799983899999999999999998855997899985799----9999999998499868973268389996156743


Q ss_pred             ------CCHHHHHHHHHHHHHHHCCCCEEEEECCC--CC--CCHHHHHHHHHHHHHHCC
Q ss_conf             ------10368999999999974158869983344--22--211246899999985138
Q gi|254780711|r  165 ------EQSPEKIAIRATQSARDGGYDAVILDTAG--RN--HINDSLMQEISEIKSLTN  213 (461)
Q Consensus       165 ------~~dp~~i~~~a~~~a~~~~~D~iiiDTaG--R~--~~d~~lm~El~~i~~~~~  213 (461)
                            .-|...+...-.+.....+.+.|+||.--  |.  ......-.++..+....+
T Consensus        99 ~~~~~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~~~~~~~~~~R~~l~~L~~~l~  157 (501)
T PRK09302         99 EQEEAGEYDLSALIERIEYAIRKIKAKRVVIDSIEALFQQYDNPAVVRRELFRLFAWLK  157 (501)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             11133447689999999999997199999999978998763587899999999999998


No 119
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.61  E-value=0.00065  Score=50.05  Aligned_cols=117  Identities=25%  Similarity=0.298  Sum_probs=58.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             899623443334688999999998614895-0782054221004779999851034742223321036899999999997
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
                      -+|++|+.||||||.+.-        -|-+ ++   +|.+...   .++-.+.--++++|-.                  
T Consensus       113 WYlviG~~gsGKTt~l~~--------Sgl~fPl---~~~~~~~---~~~g~ggt~~cdwwft------------------  160 (1169)
T TIGR03348       113 WYLVIGPPGSGKTTLLQN--------SGLKFPL---AERLGAA---ALRGVGGTRNCDWWFT------------------  160 (1169)
T ss_pred             EEEEECCCCCCHHHHHHH--------CCCCCCC---CCCCCHH---HCCCCCCCCCCCEEEE------------------
T ss_conf             589978999866899983--------7998877---4100112---2158899855571652------------------


Q ss_pred             HCCCCEEEEECCCCCCCHHH-----------HHHHHHHHHHHCCC-CCCCCCCCH--HCCHH---HHHH-------HHHH
Q ss_conf             41588699833442221124-----------68999999851385-110003101--11225---6888-------8988
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDS-----------LMQEISEIKSLTNP-HEILLVADA--LTGQD---AVHL-------ARNF  236 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~-----------lm~El~~i~~~~~p-~e~~lV~da--~~Gq~---a~~~-------a~~F  236 (461)
                         -+-|+||||||....+.           .+.-|++...- +| +-++|++|.  ..+++   -...       ..+.
T Consensus       161 ---~~AVliDtaGry~~Q~~~~~~d~~~W~~fL~lLkk~R~r-~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El  236 (1169)
T TIGR03348       161 ---DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRR-QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQEL  236 (1169)
T ss_pred             ---CCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             ---787999479760268886400189999999999864898-9987689997899974789999999999999999999


Q ss_pred             HHHCCCC---CEEEEECCCCC
Q ss_conf             7635844---07764115766
Q gi|254780711|r  237 DKIVDLT---GIILTRMDGDG  254 (461)
Q Consensus       237 ~~~~~i~---giIlTKlD~~a  254 (461)
                      ++.+++.   -|++||+|-=+
T Consensus       237 ~~~lg~~~PVYv~~TK~Dll~  257 (1169)
T TIGR03348       237 REQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHCCCCCEEEEEECHHHHH
T ss_conf             998299877599866401230


No 120
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222   This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.60  E-value=0.00017  Score=54.60  Aligned_cols=134  Identities=22%  Similarity=0.341  Sum_probs=104.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC----------CCCCCCCCHHHH
Q ss_conf             1899623443334688999999998614895078205422100477999985103474----------222332103689
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD----------TLEVIPEQSPEK  170 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~----------~~~~~~~~dp~~  170 (461)
                      .||.+.|=+||||||=+=|+|.-|=  .|.+=++.-|-=.|.||--=-.-.|+.++-|          |--....+.-++
T Consensus        85 QVviiAGETGSGKTTQLPKICLELG--rG~~GlIGHTQPRRlAAR~VA~R~AeELgtplGe~VGYkVRF~D~v~~~t~VK  162 (1320)
T TIGR01967        85 QVVIIAGETGSGKTTQLPKICLELG--RGSRGLIGHTQPRRLAARSVAERVAEELGTPLGELVGYKVRFEDQVSSNTLVK  162 (1320)
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEE
T ss_conf             9899972448762023216777542--78765412471468899999999999838898861320366314268854363


Q ss_pred             HHHHHHHHHH------HCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf             9999999997------41588699833442221124-689999998513851100031011122568888988763
Q gi|254780711|r  171 IAIRATQSAR------DGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI  239 (461)
Q Consensus       171 i~~~a~~~a~------~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~  239 (461)
                      +.-||+=-|.      .+.||.||||=|===..|-+ |+.-|+.|-.- .||..+.+-+||+  |.-.=++.|+++
T Consensus       163 LmTDGiLLAE~Q~DRfL~~YDTIIIDEAHERSLNIDFLLGYLK~lL~r-RPDLKiIITSATI--D~ERFs~HFn~A  235 (1320)
T TIGR01967       163 LMTDGILLAETQQDRFLERYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATI--DPERFSRHFNNA  235 (1320)
T ss_pred             EHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCC-CCCCCEEEECCCC--CHHHHHHHHCCC
T ss_conf             032235899852002221067336511231123388999888763266-8865257400235--744687862278


No 121
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.56  E-value=0.0033  Score=44.68  Aligned_cols=115  Identities=18%  Similarity=0.171  Sum_probs=71.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH-HHHH--HHHHHH
Q ss_conf             1899623443334688999999998614895078205422100477999985103474222332103-6899--999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQS-PEKI--AIRATQ  177 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~d-p~~i--~~~a~~  177 (461)
                      ..+++.|..|+||||.+.-+|..+..+.|.+|++++..--.-  ---.+.++...++|+.....+.. +...  ..+++.
T Consensus        14 ~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~~~--~~~~R~~s~~~~i~~~~i~~~~~~~~~~~~~~~~~~   91 (242)
T cd00984          14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKE--QLLQRLLASESGISLSKLRTGSLSDEDWERLAEAIG   91 (242)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             189999689999999999999999997799599993335388--999999999829774553026522799999999999


Q ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             9974158869983344222112468999999851385110003101
Q gi|254780711|r  178 SARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                      ..  .+..+.+.|+++..  -+++...++.+....+|+  ++|+|-
T Consensus        92 ~~--~~~~l~i~d~~~~t--~~~i~~~ir~~~~~~~~~--~vvvDy  131 (242)
T cd00984          92 EL--KELPIYIDDSSSLT--VSDIRSRARRLKKEHGLG--LIVIDY  131 (242)
T ss_pred             HH--CCCCEEEECCCCCC--HHHHHHHHHHHHHHCCCC--EEEEEH
T ss_conf             86--16988996699999--999999999998836998--999826


No 122
>KOG0925 consensus
Probab=97.55  E-value=0.00046  Score=51.25  Aligned_cols=131  Identities=25%  Similarity=0.324  Sum_probs=90.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CCC--CCCCHHHHH--
Q ss_conf             18996234433346889999999986148950782054221004779999851034742-----223--321036899--
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LEV--IPEQSPEKI--  171 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~~--~~~~dp~~i--  171 (461)
                      .+|.+||-+||||||-+-..+..+.....  -+++|+...|.||+.--+-.|+.++|..     |+.  +....|-.+  
T Consensus        63 Q~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lk  140 (699)
T KOG0925          63 QIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLK  140 (699)
T ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHC--CCEEECCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHHHH
T ss_conf             26999934888864547499999987633--6613247157889999998888744310201153212123687158999


Q ss_pred             -HHHH------HHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf             -9999------9999741588699833442221-1246899999985138511000310111225688889887635
Q gi|254780711|r  172 -AIRA------TQSARDGGYDAVILDTAGRNHI-NDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV  240 (461)
Q Consensus       172 -~~~a------~~~a~~~~~D~iiiDTaGR~~~-d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~  240 (461)
                       +.++      +..--...|.+||.|-|---.. -+-||.=|+++...- ||..+.|+.|+.      -|..|..+.
T Consensus       141 y~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl------~a~Kfq~yf  210 (699)
T KOG0925         141 YCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATL------DAEKFQRYF  210 (699)
T ss_pred             HHCCHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCC------CHHHHHHHC
T ss_conf             9533289998750855453007995316666678999999999998619-881699940601------259999870


No 123
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.55  E-value=0.0054  Score=43.05  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=54.9

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCHHHHHH
Q ss_conf             58841899623443334688999999998614--895078205422100477999985103474222332--10368999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLK--KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIP--EQSPEKIA  172 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~--~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~--~~dp~~i~  172 (461)
                      ..-|+ ++|.||.|+||||++--+|+.+--..  ..-.-+-++|.+..+.. .+...  .-.++++....  +..-..+.
T Consensus        34 ~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~-~i~~~--~~~~~~~~~~~~~~~~~~d~i  109 (337)
T PRK12402         34 GNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKK-YLVED--PRFAHFYDDPKRKYKSVIDNF  109 (337)
T ss_pred             CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCC-EEECC--CCHHHHHCCHHHCCCCHHHHH
T ss_conf             99876-988892984899999999999679975678333116531135640-01016--642344201533277378999


Q ss_pred             HHHHHHHH-----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999997-----4158869983344222112468999999851
Q gi|254780711|r  173 IRATQSAR-----DGGYDAVILDTAGRNHINDSLMQEISEIKSL  211 (461)
Q Consensus       173 ~~a~~~a~-----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~  211 (461)
                      ++.+....     ...|-+||+|-|.++..+..  .-|.++.+.
T Consensus       110 ~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq--~aLlk~lEe  151 (337)
T PRK12402        110 KHILKEYASMRPLSADYKLILFDNAEALREDAQ--QALRRIMER  151 (337)
T ss_pred             HHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHH--HHHHHHHHC
T ss_conf             999999861488778804999707131799999--999988740


No 124
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54  E-value=0.00071  Score=49.79  Aligned_cols=79  Identities=18%  Similarity=0.102  Sum_probs=49.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      .|.-++++|+.|+||||.+.-+|+.+.. .+..+..+.+................                 ........
T Consensus        18 ~~~~ill~GppGtGKT~la~~ia~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~   79 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFR-PGAPFLYLNASDLLEGLVVAELFGHF-----------------LVRLLFEL   79 (151)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEEEHHHCCHHHHHHHHHHHH-----------------HHHHHHHH
T ss_conf             9980899899998865999999997121-37982785477704677775760577-----------------88989999


Q ss_pred             HHHCCCCEEEEECCCCC
Q ss_conf             97415886998334422
Q gi|254780711|r  179 ARDGGYDAVILDTAGRN  195 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~  195 (461)
                      .......+++||-..++
T Consensus        80 ~~~~~~~vl~iDEi~~l   96 (151)
T cd00009          80 AEKAKPGVLFIDEIDSL   96 (151)
T ss_pred             HHHCCCCEEEEECHHHC
T ss_conf             99769986982016655


No 125
>KOG2878 consensus
Probab=97.54  E-value=0.00065  Score=50.06  Aligned_cols=80  Identities=24%  Similarity=0.196  Sum_probs=55.0

Q ss_pred             HHHHHHHHHCCCCCC-CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             999999871877421-00025884189962344333468899999999861--489507820542210047799998510
Q gi|254780711|r   78 VHDELVEVLGKESIE-LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTL--KKKKILMASLDVHRPAAQEQLRYLGEQ  154 (461)
Q Consensus        78 v~~eL~~lLg~~~~~-l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~--~~~kV~lv~~Dt~R~aA~eQL~~~a~~  154 (461)
                      +-+...+.|..-... ++-...-|.+|-|-|||||||||++.-|-+++.++  +.++++-++.|.|---+-+|++.--+.
T Consensus         8 ~id~~~~fl~kyiP~~f~~G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~n   87 (282)
T KOG2878           8 TIDQKARFLHKYIPVFFKDGDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKN   87 (282)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCEEEECHHHHHHHHHC
T ss_conf             37889988886375325678867679993378888830431456789999853644148997210366025578887509


Q ss_pred             CCC
Q ss_conf             347
Q gi|254780711|r  155 IQV  157 (461)
Q Consensus       155 ~~v  157 (461)
                      -|-
T Consensus        88 pnN   90 (282)
T KOG2878          88 PNN   90 (282)
T ss_pred             CCC
T ss_conf             998


No 126
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.54  E-value=0.00056  Score=50.55  Aligned_cols=121  Identities=21%  Similarity=0.205  Sum_probs=69.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
                      -.||+.|++|||||||.|-+-.|+-+...+.++-+- |-     +|=+-.   .-..-+-.-+-+.|-.+. .+|+..|-
T Consensus       126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIE-DP-----IE~vh~---skkslI~QREvG~dT~sF-~~aLraAL  195 (353)
T COG2805         126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIE-DP-----IEYVHE---SKKSLINQREVGRDTLSF-ANALRAAL  195 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEC-CC-----HHHHHC---CHHHHHHHHHHCCCHHHH-HHHHHHHH
T ss_conf             669986799996787999999998414775168723-74-----686504---327666687745427889-99999986


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCHHCCHHHHHHHHHHHHHCC
Q ss_conf             4158869983344222112468999999851385110-003101112256888898876358
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEI-LLVADALTGQDAVHLARNFDKIVD  241 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~-~lV~da~~Gq~a~~~a~~F~~~~~  241 (461)
                      .+.-|||+|--          |..++.|.-++...|+ +||+.-.--++|+..+..+-+.++
T Consensus       196 ReDPDVIlvGE----------mRD~ETi~~ALtAAETGHLV~~TLHT~sA~~ti~RiidvFp  247 (353)
T COG2805         196 REDPDVILVGE----------MRDLETIRLALTAAETGHLVFGTLHTNSAAKTIDRIIDVFP  247 (353)
T ss_pred             HCCCCEEEEEC----------CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf             02999799821----------34699999999898608877774023637777779887388


No 127
>PRK09401 reverse gyrase; Reviewed
Probab=97.53  E-value=0.00054  Score=50.70  Aligned_cols=98  Identities=20%  Similarity=0.190  Sum_probs=64.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf             996234433346889999999986148950782054221004779999851034742223-3210368999999999974
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV-IPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~-~~~~dp~~i~~~a~~~a~~  181 (461)
                      ..++-|+|+||||+-.=+|.|+.+++++...++.+-+-=.-+++-|+.+++..++++--. +.+.-+.+--.+..+..+.
T Consensus        96 FaiiAPTG~GKTtfgl~~sly~a~kgkks~~i~PT~~Lv~Q~~~kl~~~~~~~~~~~~~~~y~~~~~~~~kee~~~~~~~  175 (1176)
T PRK09401         96 FAIIAPTGVGKTTFGLVMALYLAKKGKKSYIIFPTRLLVEQVVEKLRKLAEKVGVKVRLLYYHSSLKKKEKEEFLERLEE  175 (1176)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHC
T ss_conf             48988899888899999999998659839999688899999999999999970998408998567766678999988655


Q ss_pred             CCCCEEEEECCCCCCCHHHH
Q ss_conf             15886998334422211246
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSL  201 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~l  201 (461)
                      ..||+ +|-|+..++.+-++
T Consensus       176 gdfdI-litT~~fl~kn~~~  194 (1176)
T PRK09401        176 GDFDI-LVTTSQFLSKNFDE  194 (1176)
T ss_pred             CCCCE-EEEEHHHHHHHHHH
T ss_conf             99868-99856767654876


No 128
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.53  E-value=0.0011  Score=48.45  Aligned_cols=96  Identities=23%  Similarity=0.285  Sum_probs=59.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8996234433346889999999986148950782054221004779999851---0347422233210368999999999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE---QIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~---~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      +++++|..|+||||.+..+|..... .+.+|+.+++.--+.--.++......   ..+.-++......++........++
T Consensus         1 ~~li~g~~g~GKttl~~~~~~~~~~-~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER   79 (165)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             9899989999899999999999876-399799998666448999999986224671307999359997699999999999


Q ss_pred             HHH-CCCCEEEEECCCCCCCH
Q ss_conf             974-15886998334422211
Q gi|254780711|r  179 ARD-GGYDAVILDTAGRNHIN  198 (461)
Q Consensus       179 a~~-~~~D~iiiDTaGR~~~d  198 (461)
                      +.. ...++++||..=|+...
T Consensus        80 ~~~~~~~vliiiDSit~~~~a  100 (165)
T cd01120          80 LRERGGDDLIILDELTRLVRA  100 (165)
T ss_pred             HHHCCCCEEEEEECHHHHHHH
T ss_conf             998699779999288998877


No 129
>cd01895 EngA2 EngA2 subfamily.  This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains.  Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.  Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.52  E-value=0.00071  Score=49.79  Aligned_cols=147  Identities=19%  Similarity=0.284  Sum_probs=74.4

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      |-.|.++|..-+||||-+-+|..       .++.+++ ++  ||.             .       .|+..      ..+
T Consensus         2 ~~~V~ivG~pN~GKSTL~N~l~g-------~~~~~vs-~~--pgt-------------T-------r~~~~------~~~   45 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLG-------EERVIVS-DI--AGT-------------T-------RDSID------VPF   45 (174)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC-------CCCEEEC-CC--CCC-------------E-------EECCE------EEE
T ss_conf             98999998999989999999838-------9844434-99--991-------------5-------73328------999


Q ss_pred             HHCCCCEEEEECCCC---CCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHH--HHHHHHHHHH-CCCCCEEEEECC
Q ss_conf             741588699833442---221--12468999999851385110003101112256--8888988763-584407764115
Q gi|254780711|r  180 RDGGYDAVILDTAGR---NHI--NDSLMQEISEIKSLTNPHEILLVADALTGQDA--VHLARNFDKI-VDLTGIILTRMD  251 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR---~~~--d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a--~~~a~~F~~~-~~i~giIlTKlD  251 (461)
                      ...+..+.++||+|=   .+.  +.+.+.-.+.+..+-+.|-+++|+||..+-..  ....+...+. .+ -=++++|.|
T Consensus        46 ~~~~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~~i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p-~iiv~NK~D  124 (174)
T cd01895          46 EYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWD  124 (174)
T ss_pred             EECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECEE
T ss_conf             9999889998578842134421068899999999999842865899758989988999999999985998-699985675


Q ss_pred             CCCCCCHHHHH-H--------HHHCCCHHHEE--CCCCCCCCC
Q ss_conf             76633036777-8--------88478730261--586723210
Q gi|254780711|r  252 GDGRGGAALSM-R--------TVTGKPIKAIG--TGEKINDLE  283 (461)
Q Consensus       252 ~~akgG~als~-~--------~~~~~PI~fig--~GE~~~dle  283 (461)
                      --.+-...+.. .        ...+.||.+++  +|+.+++|.
T Consensus       125 li~~~~~~~~~~~~~~~~~~~~~~~~~ii~iSA~~g~Gi~~L~  167 (174)
T cd01895         125 LVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLF  167 (174)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
T ss_conf             2676477899999999987341689928999744798999999


No 130
>PRK00784 cobyric acid synthase; Provisional
Probab=97.52  E-value=0.006  Score=42.73  Aligned_cols=175  Identities=18%  Similarity=0.266  Sum_probs=110.4

Q ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEE-----------EECCCCCCCHHHHHHHHHHHCCCCCC----------
Q ss_conf             8996234-4333468899999999861489507-----------82054221004779999851034742----------
Q gi|254780711|r  102 VIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKIL-----------MASLDVHRPAAQEQLRYLGEQIQVDT----------  159 (461)
Q Consensus       102 vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~-----------lv~~Dt~R~aA~eQL~~~a~~~~v~~----------  159 (461)
                      .||+.|. -++||||-+|-||+.|++ .|.+|+           .|++|-.-.|-..=++.+|..+.-.+          
T Consensus         5 ~lMv~GT~S~vGKS~l~aaLCRi~~~-~G~~VaPFKaQNMslNs~vt~dG~EigrAQ~~QA~Aag~~p~v~MNPILLKP~   83 (492)
T PRK00784          5 ALMVQGTTSDAGKSTLVAGLCRILAR-RGLRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLLKPQ   83 (492)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCCCCHHHCCCCCEECCCCCEEHHHHHHHHHHCCCCCCCCCCCEEECCC
T ss_conf             05888678887799999999999995-89855785702246651788999833699999999869999767688776318


Q ss_pred             ---------------------CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-HHHH--HHHCCCC
Q ss_conf             ---------------------223321036899999999997415886998334422211246899-9999--8513851
Q gi|254780711|r  160 ---------------------LEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQE-ISEI--KSLTNPH  215 (461)
Q Consensus       160 ---------------------~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~E-l~~i--~~~~~p~  215 (461)
                                           |.. .-.....++.++++.... .||+|++.-|| ++-+-||++. +..+  .+.++ .
T Consensus        84 gd~~SQVIv~Gk~~g~~~a~~Y~~-~~~~~~~~v~~a~~~L~~-~~d~iV~EGAG-SpaEiNL~~~Di~Nm~~A~~~~-a  159 (492)
T PRK00784         84 SDTGSQVIVQGKVVGNMDARDYHD-YKPRLLEAVLESLDRLAA-EYDLVVVEGAG-SPAEINLRDRDIANMGFAEAAD-A  159 (492)
T ss_pred             CCCCCEEEECCEECCCCCHHHHHH-HHHHHHHHHHHHHHHHHH-HCCEEEEECCC-CCCCCCCCHHHHHHHHHHHHCC-C
T ss_conf             998867999997875313999998-699999999999999886-58899993589-8200265220024289998659-9


Q ss_pred             CCCCCCCHHCCHHHHHHHHHHH-----HHCCCCCEEEEECCCCCCC--CHHHHHHHHHCCCHHHEECCCCCCCCC
Q ss_conf             1000310111225688889887-----6358440776411576633--036777888478730261586723210
Q gi|254780711|r  216 EILLVADALTGQDAVHLARNFD-----KIVDLTGIILTRMDGDGRG--GAALSMRTVTGKPIKAIGTGEKINDLE  283 (461)
Q Consensus       216 e~~lV~da~~Gq~a~~~a~~F~-----~~~~i~giIlTKlD~~akg--G~als~~~~~~~PI~fig~GE~~~dle  283 (461)
                      -++||.|---|---...+-++.     +.--+-|+|+.|+-||..-  -+.=-+-..||+|+  +|+=-.+++|.
T Consensus       160 pviLV~DIdRGGvfAsl~GT~~lL~~~eR~li~G~IiNKFRGD~~ll~pG~~~le~~tg~Pv--lGviP~~~~l~  232 (492)
T PRK00784        160 PVILVADIDRGGVFASLVGTLALLSPEERARVKGFVINKFRGDISLLEPGLDWLEELTGIPV--LGVLPYLDDLR  232 (492)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCHHHHHHEEEEEEEEECCCHHHHCCHHHHHHHHHCCCC--EEEECCCCCCC
T ss_conf             88999975676426877638875999887115899997645874663559999999868980--68614656799


No 131
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=97.51  E-value=0.0046  Score=43.59  Aligned_cols=174  Identities=16%  Similarity=0.256  Sum_probs=90.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf             46969999999999999830311126998999999999999987187742100025884189962344333468899999
Q gi|254780711|r   42 DVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIA  121 (461)
Q Consensus        42 DV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA  121 (461)
                      |+++..+.++.++   +..-.+++.+..           .|-++||+.-.       .-.|.=++|+.|||||+-|-.||
T Consensus         6 ~~~f~t~~~~~~~---r~~~~~isTg~~-----------~LD~lLgGGi~-------~g~ITEi~G~~gsGKTQlc~qla   64 (261)
T pfam08423         6 PMGFTTATELHQR---RSEVIRITTGSK-----------ELDKLLGGGIE-------TGSITEVFGEFRTGKTQLCHTLC   64 (261)
T ss_pred             CCCCCCHHHHHHH---HCCCCEECCCCH-----------HHHHHHCCCCC-------CCEEEEEECCCCCCHHHHHHHHH
T ss_conf             5787439999997---548735778987-----------89987379866-------77299998998887899999999


Q ss_pred             HHHH---HHC--CCCEEEECCC-CCCCHHHHHHHHHHHCCC---------CCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf             9998---614--8950782054-221004779999851034---------742223321036899999999997415886
Q gi|254780711|r  122 YHLK---TLK--KKKILMASLD-VHRPAAQEQLRYLGEQIQ---------VDTLEVIPEQSPEKIAIRATQSARDGGYDA  186 (461)
Q Consensus       122 ~~~~---~~~--~~kV~lv~~D-t~R~aA~eQL~~~a~~~~---------v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~  186 (461)
                      --.+   ..+  +.+|+.|.+. +|+|-=+.|+   |+..+         +-++......+-..+....-.......+.+
T Consensus        65 v~~qlp~~~gg~~g~vvyIDTEg~f~~eRl~qi---a~~~~~~~~~~L~~I~v~r~~~~~~~~~~l~~~~~~~~~~~v~L  141 (261)
T pfam08423        65 VTCQLPLEMGGGEGKALYIDTEGTFRPERIVAI---AERFGLDPEEVLDNIAYARAYNTEHQMQLLLQAAAMMSESRFAL  141 (261)
T ss_pred             HHHHCHHHHCCCCCEEEEEECCCCCCHHHHHHH---HHHHCCCHHHHHHHCEECCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             994070965699972899936888698999999---99829997898753314168998999999999999873178349


Q ss_pred             EEEECCCCCCCHH-----HHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             9983344222112-----468999999851385110003101112256888898876358440776411576
Q gi|254780711|r  187 VILDTAGRNHIND-----SLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGD  253 (461)
Q Consensus       187 iiiDTaGR~~~d~-----~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~  253 (461)
                      |+||..--+...+     ++.+..+.+.+..              +.-...|+.|+-+|=++-=+.|+.|+.
T Consensus       142 vVvDSiaalfR~e~~g~~~l~~R~~~L~~~l--------------~~L~~lA~~~~~aVvvTNQV~~~~~~~  199 (261)
T pfam08423       142 LIVDSATALYRTDFSGRGELAERQQHLAKFL--------------RSLQRLADEFGVAVVITNQVVAQVDGA  199 (261)
T ss_pred             EEEECCCEEEEECCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHCCCEEEEEEEEEEECCCC
T ss_conf             9983240023330036752899999999999--------------999999998095899960479852886


No 132
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=97.49  E-value=0.00026  Score=53.09  Aligned_cols=38  Identities=24%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             89962-3443334688999999998614895078205422
Q gi|254780711|r  102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus       102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      ||.++ +==|+|||||++-||+-+.. .|++|++|-+|..
T Consensus         3 iIai~s~KGGVGKTT~t~nLa~aLa~-~G~rVLlID~Dpq   41 (244)
T pfam06564         3 VLALQGVRGGVGTTSLTAALGWALQQ-LGESVLVIDASPD   41 (244)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC
T ss_conf             99996699986199999999999997-7995899968987


No 133
>PTZ00035 Rad51; Provisional
Probab=97.49  E-value=0.016  Score=39.52  Aligned_cols=105  Identities=16%  Similarity=0.161  Sum_probs=63.5

Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH---HHCC--CCEEEE-CCCCCCCHHHHHHHHHHHC
Q ss_conf             999871877421000258841899623443334688999999998---6148--950782-0542210047799998510
Q gi|254780711|r   81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLK---TLKK--KKILMA-SLDVHRPAAQEQLRYLGEQ  154 (461)
Q Consensus        81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~---~~~~--~kV~lv-~~Dt~R~aA~eQL~~~a~~  154 (461)
                      +|-++||+.-.     .  -.+-=++|..|+|||.-|-.||--.+   ..+|  -+|+.| +=.||||--+.|+   |++
T Consensus       118 ~LD~LLGGGie-----t--~sITEi~Ge~gsGKTQlChqLaV~~QLP~~~GG~~GkvvYIDTEgtFrpeRi~qI---A~~  187 (350)
T PTZ00035        118 QLDRLLKGGIE-----T--GGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTFRPERIVAI---AKR  187 (350)
T ss_pred             HHHHHHCCCEE-----C--CCEEEEEECCCCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCHHHHHHH---HHH
T ss_conf             88876278941-----3--8587897279897899999999990485777798862799968899878999999---987


Q ss_pred             CC---------CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             34---------742223321036899999999997415886998334422
Q gi|254780711|r  155 IQ---------VDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN  195 (461)
Q Consensus       155 ~~---------v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~  195 (461)
                      .+         |-++..+...+-..++..+...+...++-+||||.+--+
T Consensus       188 ~gld~~~vL~nI~~ara~n~ehq~~ll~~~~~~~~e~~vrLlIVDSital  237 (350)
T PTZ00035        188 YGLHPTDCLNNIAYAKAYNCDHQTELLIDASAMMADARFALLIVDSATAL  237 (350)
T ss_pred             CCCCHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
T ss_conf             09997998533223220687889999999999851167589985445667


No 134
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.48  E-value=0.00084  Score=49.23  Aligned_cols=148  Identities=20%  Similarity=0.278  Sum_probs=79.3

Q ss_pred             CCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH---------HHHC--------CCCCCC
Q ss_conf             84189962-34433346889999999986148950782054221004779999---------8510--------347422
Q gi|254780711|r   99 SPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRY---------LGEQ--------IQVDTL  160 (461)
Q Consensus        99 ~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~---------~a~~--------~~v~~~  160 (461)
                      ..++|+.. |.-|+||+|+++-||.-+.. .|+||+++-||.|.|.--.-|..         ...+        .++...
T Consensus        56 ~~~~I~V~S~kgGvGKStva~nLA~alA~-~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~l  134 (265)
T COG0489          56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQ-LGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVL  134 (265)
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEE
T ss_conf             66189997589987568999999999996-39938999674669863554089865565411378711432202665504


Q ss_pred             CC----CCCCHHHHH-----HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHHHH
Q ss_conf             23----321036899-----9999999974158869983344222112468999999851385110003101-1122568
Q gi|254780711|r  161 EV----IPEQSPEKI-----AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA-LTGQDAV  230 (461)
Q Consensus       161 ~~----~~~~dp~~i-----~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~a~  230 (461)
                      ..    ...-+|...     ..+=+..+....||+|||||+=-...-     .+.-+...  |+-+++|..- -+--..+
T Consensus       135 si~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~-----d~~i~~~~--~~g~viVt~p~~~~~~~v  207 (265)
T COG0489         135 SILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDA-----DATVLQRI--PDGVVIVTTPGKTALEDV  207 (265)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH-----HHHHHHHC--CCEEEEEECCCCCHHHHH
T ss_conf             78832889989467763389999999974568888999699986427-----77887513--885999966773559999


Q ss_pred             HHHHHHHHH--CCCCCEEEEECCCCC
Q ss_conf             888988763--584407764115766
Q gi|254780711|r  231 HLARNFDKI--VDLTGIILTRMDGDG  254 (461)
Q Consensus       231 ~~a~~F~~~--~~i~giIlTKlD~~a  254 (461)
                      ..+-.|-+.  .++-|+|....+-..
T Consensus       208 ~ka~~~~~~~~~~vlGvv~Nm~~~~~  233 (265)
T COG0489         208 KKAIDMLEKAGIPVLGVVENMSYFIC  233 (265)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf             99999998749934799966866666


No 135
>cd04163 Era Era subfamily.  Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria.  It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA.  It also contacts several assembly elements of the 30S subunit.  Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism.  Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding.  Both domains are important for Era function.  Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.48  E-value=0.0022  Score=46.10  Aligned_cols=145  Identities=19%  Similarity=0.248  Sum_probs=74.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      .|.++|...+||||-+-.|.       +.++..++ +  .|+--                    .|+..    ++  ...
T Consensus         5 ~V~ivG~pN~GKSsL~N~L~-------~~~~a~vs-~--~~gtT--------------------r~~~~----~~--~~~   48 (168)
T cd04163           5 FVAIVGRPNVGKSTLLNALV-------GQKISIVS-P--KPQTT--------------------RNRIR----GI--YTD   48 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHH-------CCCEEEEC-C--CCCEE--------------------ECCCE----EE--EEE
T ss_conf             89999999999999999995-------89703323-8--89826--------------------34423----68--984


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHH-HHHHHH-CCCCCCCCCCCHHCCHH--HHHHHHHHHHHCCC-CCEEEEECCCCCCC
Q ss_conf             158869983344222112468999-999851-38511000310111225--68888988763584-40776411576633
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEI-SEIKSL-TNPHEILLVADALTGQD--AVHLARNFDKIVDL-TGIILTRMDGDGRG  256 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~-~~p~e~~lV~da~~Gq~--a~~~a~~F~~~~~i-~giIlTKlD~~akg  256 (461)
                      .++.++++||+|-.......-+.+ +...+. -+.|-+++|+|+.-+-.  -....+...+ .+. -=++++|.|--..-
T Consensus        49 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~l~~~D~il~vvD~~~~~~~~d~~i~~~l~~-~~~~~iivlNK~Dl~~~~  127 (168)
T cd04163          49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKK-SKTPVILVLNKIDLVKDK  127 (168)
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEECEEECCCH
T ss_conf             9978999958986651456778999999986513655899997898986677999999998-099859999788704787


Q ss_pred             CHHHHHHHH-----HCCCHHHEE--CCCCCCCCC
Q ss_conf             036777888-----478730261--586723210
Q gi|254780711|r  257 GAALSMRTV-----TGKPIKAIG--TGEKINDLE  283 (461)
Q Consensus       257 G~als~~~~-----~~~PI~fig--~GE~~~dle  283 (461)
                      .........     -..|+.+|+  +|+.+++|.
T Consensus       128 ~~~~~~~~~~~~~~~~~~vi~iSA~~g~Gid~L~  161 (168)
T cd04163         128 EDLLPLLEKLKELGPFAEIFPISALKGENVDELL  161 (168)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf             7899999999961899968999777896999999


No 136
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.47  E-value=0.0006  Score=50.33  Aligned_cols=180  Identities=18%  Similarity=0.152  Sum_probs=96.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHH
Q ss_conf             8996234433346889999999986148950782054221004779999851034742-------223321036899999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-------LEVIPEQSPEKIAIR  174 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-------~~~~~~~dp~~i~~~  174 (461)
                      |.++.|-=||||||.+-.|.+.   +.|+|++++=-+--- -.+|. ...-...+.++       +.+.-..|-+.....
T Consensus         3 VtvitGFLGsGKTTlL~~lL~~---~~g~kiAVIVNEfGE-vgID~-~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~   77 (323)
T COG0523           3 VTVITGFLGSGKTTLLNHLLAN---RDGKKIAVIVNEFGE-VGIDG-GALLSDTGEEVVELTNGCICCTVRDDLLPALER   77 (323)
T ss_pred             EEEEEECCCCCHHHHHHHHHHC---CCCCEEEEEEECCCC-CCCCC-CCCCCCCCCCEEEECCCCEEEECCCHHHHHHHH
T ss_conf             7998116779989999999854---589807999855740-22167-764134897579836970787034215899999


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH---HHHHCCCCCCCCCCCHHCCHHHHH-HHHHHHHHCCC-CCEEEEE
Q ss_conf             999997415886998334422211246899999---985138511000310111225688-88988763584-4077641
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISE---IKSLTNPHEILLVADALTGQDAVH-LARNFDKIVDL-TGIILTR  249 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~---i~~~~~p~e~~lV~da~~Gq~a~~-~a~~F~~~~~i-~giIlTK  249 (461)
                       +.. ...+.|.|+|-|+|=-+ =...++.+..   +...+.-+-++-|+||...-.... +.+.|.+.+.. +-+++||
T Consensus        78 -L~~-~~~~~D~ivIEtTGlA~-P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK  154 (323)
T COG0523          78 -LLR-RRDRPDRLVIETTGLAD-PAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNK  154 (323)
T ss_pred             -HHH-CCCCCCEEEEECCCCCC-CHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf             -985-25689989996887778-699999860651224540413369998478865456779999999998679999836


Q ss_pred             CCCCCCCC-HHHH-HHHH--HCCCHHHEECCCCC----CCCCCCCHHH
Q ss_conf             15766330-3677-7888--47873026158672----3210013688
Q gi|254780711|r  250 MDGDGRGG-AALS-MRTV--TGKPIKAIGTGEKI----NDLENFFPDR  289 (461)
Q Consensus       250 lD~~akgG-~als-~~~~--~~~PI~fig~GE~~----~dle~F~p~~  289 (461)
                      .|--.... .++- ....  -..+|.....|+.-    =|.-.|++++
T Consensus       155 ~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~~~~~~~~ll~~~~~~~~~  202 (323)
T COG0523         155 TDLVDAEELEALEARLRKLNPRARIIETSYGDVDLAELLDEGLFDLDR  202 (323)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCCC
T ss_conf             456898899999999997599986998123668778863665444444


No 137
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.47  E-value=0.0017  Score=46.87  Aligned_cols=145  Identities=19%  Similarity=0.261  Sum_probs=84.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC----------CCCCCCC-------
Q ss_conf             18996234433346889999999986148950782054221004779999851034----------7422233-------
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ----------VDTLEVI-------  163 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~----------v~~~~~~-------  163 (461)
                      .++++.|..|+|||+.+..++..... .|.+|+.|++|--+.-=.++...++-...          ++.+...       
T Consensus        24 ~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~~~~~~  102 (260)
T COG0467          24 SVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKGLVSIV  102 (260)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf             78999938998689999999997762-69858999920698999999988099778975444068763121112542010


Q ss_pred             --CCCHHHHHHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHH--HHHHHHHHHCCCC--CCCCCCCHHCCHHHHH-HHH
Q ss_conf             --210368999999999974158869983344--222112468--9999998513851--1000310111225688-889
Q gi|254780711|r  164 --PEQSPEKIAIRATQSARDGGYDAVILDTAG--RNHINDSLM--QEISEIKSLTNPH--EILLVADALTGQDAVH-LAR  234 (461)
Q Consensus       164 --~~~dp~~i~~~a~~~a~~~~~D~iiiDTaG--R~~~d~~lm--~El~~i~~~~~p~--e~~lV~da~~Gq~a~~-~a~  234 (461)
                        ...+...+...-.+.+...+.+.+++|...  .+..+...+  .++..+.+..+..  ..+++.++..++.... ..+
T Consensus       103 ~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~~~~~~r~~~~~l~~~~~~~~~t~~~~~~~~~~~~~~~~~~~  182 (260)
T COG0467         103 VGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLNDPALVRRILLLLKRFLKKLGVTSLLTTEAPVEERGESGVEE  182 (260)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEE
T ss_conf             46652289999999999986289889996630776652782578999999998765068489999744334666566142


Q ss_pred             HHHHHCCCCCEEEEECC
Q ss_conf             88763584407764115
Q gi|254780711|r  235 NFDKIVDLTGIILTRMD  251 (461)
Q Consensus       235 ~F~~~~~i~giIlTKlD  251 (461)
                           .-++|+|-=...
T Consensus       183 -----~~vdgvI~l~~~  194 (260)
T COG0467         183 -----YIVDGVIRLDLK  194 (260)
T ss_pred             -----EEEEEEEEEEEE
T ss_conf             -----168999999777


No 138
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.45  E-value=0.0012  Score=47.93  Aligned_cols=115  Identities=23%  Similarity=0.382  Sum_probs=81.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-C-----CCCCCCCEEEEEEC
Q ss_conf             99999852469699999999999998303111269989999999999999871877421-0-----00258841899623
Q gi|254780711|r   34 IRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIE-L-----DLNAPSPLVIMLVG  107 (461)
Q Consensus        34 i~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~-l-----~~~~~~p~vIllvG  107 (461)
                      +.++|..+.+.++.+..+-..|++.+..+.. ..++ ++.+.+.||..|.+--+++... +     -.....|.+|++-|
T Consensus       192 LarSltaaG~~P~~Ay~iA~eie~~L~~~~~-~~i~-~~elr~~v~~~L~~~~~~~~A~rY~lwR~ir~~~~PiiILIGG  269 (492)
T PRK12337        192 LVQSLLAAGVAPDVARKVARVTQRDLRGSGD-RVVR-RDEIREKVEALLRDEVGPDVSARYRLLRVLRKPPRPLHVLLGG  269 (492)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-EEEE-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             9999998058888999999999999986588-7970-9999999999998730388999999999973568876999607


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             4433346889999999986148950782054221004779999851034742
Q gi|254780711|r  108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT  159 (461)
Q Consensus       108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~  159 (461)
                      ..|+||+|-++-||+.+--   .+  ++++|+-|    |=++.+-..--.|.
T Consensus       270 aSGvGKSTlAseLA~RLGI---~~--VIsTDsIR----EVMR~~is~el~P~  312 (492)
T PRK12337        270 VSGTGKSVLAAELAYRLGI---TR--VVPTDAIR----EVMRAMVSKDLLPT  312 (492)
T ss_pred             CCCCCHHHHHHHHHHHHCC---CC--CCCCHHHH----HHHHHHCCHHHCCH
T ss_conf             8886688899999996098---81--02544799----99998459764845


No 139
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.44  E-value=0.0042  Score=43.91  Aligned_cols=144  Identities=18%  Similarity=0.148  Sum_probs=81.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHHHHHH
Q ss_conf             189962344333468899999999861489507820542210047799998510347422233210-3689999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRATQSA  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a~~~a  179 (461)
                      .++++.|..|+||||.+.-+|..+..+.|.+|++++.-.-.--  -..+.++...++++....... .+.+-...+++..
T Consensus        31 eL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~--~~~Rlls~~~g~~~~~~~~~~~~~~e~~~~~~~~~  108 (271)
T cd01122          31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVR--TARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEF  108 (271)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH--HHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             0899996899869999999999999976990899970499999--99999999829971103446778099999999997


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-----CH---H-------HHHHHHHHHHHCCCCC
Q ss_conf             7415886998334422211246899999985138511000310111-----22---5-------6888898876358440
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-----GQ---D-------AVHLARNFDKIVDLTG  244 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-----Gq---~-------a~~~a~~F~~~~~i~g  244 (461)
                      .... -+.+.|..|... -+.+.+.++.+....+++  ++|+|-..     ++   +       .....+.|.+..++.-
T Consensus       109 ~~~~-~l~i~d~~~~~~-~~~i~~~ir~~~~~~~~~--~vvIDylqll~~~~~~~~d~~~~i~~i~~~Lk~lAke~~v~V  184 (271)
T cd01122         109 EGTG-RLFMYDSFGEYS-MDSVLEKVRYMAVSHGIQ--HIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHI  184 (271)
T ss_pred             CCCC-CEEEECCCCCCC-HHHHHHHHHHHHHHCCCC--EEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             0799-808878999988-999999999999828998--899831785036786773189999999999999999979977


Q ss_pred             EEEEEC
Q ss_conf             776411
Q gi|254780711|r  245 IILTRM  250 (461)
Q Consensus       245 iIlTKl  250 (461)
                      +.++-+
T Consensus       185 i~lsQl  190 (271)
T cd01122         185 TLVSHL  190 (271)
T ss_pred             EEEECC
T ss_conf             999526


No 140
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44  E-value=0.018  Score=39.08  Aligned_cols=218  Identities=11%  Similarity=0.104  Sum_probs=110.9

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC--EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHH
Q ss_conf             58841899623443334688999999998614895--07820542210047799998510347422233210-3689999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK--ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAI  173 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k--V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~  173 (461)
                      ..-|+.+||+|+.|+||||++-=||+.+--.+...  --.-.|+.-        +.+...-.++++.....+ .-++-++
T Consensus        36 ~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C--------~~I~~g~~~DViEiDaAs~~gVddIR  107 (462)
T PRK06305         36 NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAIC--------KEISSGTSLDVIEIDGASHRGIEDIR  107 (462)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH--------HHHHCCCCCCEEEECCCCCCCHHHHH
T ss_conf             9976234303899859999999999996799998888988766888--------99863899986864355344668999


Q ss_pred             HHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHH----HHHHHH--------
Q ss_conf             999999----7415886998334422211246899999985138511000310111225688----889887--------
Q gi|254780711|r  174 RATQSA----RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVH----LARNFD--------  237 (461)
Q Consensus       174 ~a~~~a----~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~----~a~~F~--------  237 (461)
                      +-++..    ....|-|.|||-+-.++.+.  ..-|-+..+.- |.+++|++-.+--+....    -.+.|+        
T Consensus       108 el~e~v~~~P~~~~yKVyIIDEvhmLs~~A--fNALLKtLEEP-P~~v~FILaTTe~~KIp~TIlSRCQrf~F~~i~~~~  184 (462)
T PRK06305        108 QINETVLFTPSKSQYKIYIIDEVHMLTKEA--FNSLLKTLEEP-PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEET  184 (462)
T ss_pred             HHHHHHCCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHHHCC-CCCEEEEEEECCHHHCCHHHHHHHHEEECCCCCHHH
T ss_conf             999771008867750599981521179999--99999986189-877499998188142854787654023325799999


Q ss_pred             -----------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf             -----------635844----07764115766330367778884787302615867232100136889987735862788
Q gi|254780711|r  238 -----------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVS  302 (461)
Q Consensus       238 -----------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~  302 (461)
                                 +.+.++    -+|..+-||+-|  -|||+-...   |.|-  +.+++       ..-+..+||.=|-..
T Consensus       185 I~~~L~~I~~~E~i~~e~~AL~lIA~~a~GsmR--DAlslLDQ~---i~~~--~~~it-------~~~V~~~lG~v~~~~  250 (462)
T PRK06305        185 IIDKLALIAQQDGIETSREALLPIARAAQGSLR--DAESLYDYV---VGLF--PKSLS-------PDTVAKALGLLSQDS  250 (462)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHHH---HHHC--CCCCC-------HHHHHHHHCCCCHHH
T ss_conf             999999999983998599999999998589587--899999999---9847--99868-------999999868998899


Q ss_pred             HHHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             9998742112678--998886531046379999999999
Q gi|254780711|r  303 LVEKAARNLNEKQ--AALTAKKIAKGKFDLEDLAEQFRQ  339 (461)
Q Consensus       303 l~e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~Ql~~  339 (461)
                      +.+-....++.+.  +-+....+...-.+...|++++-.
T Consensus       251 l~~L~~ai~~~d~~~~l~~~~~i~~~G~d~~~~l~dL~~  289 (462)
T PRK06305        251 LYTLAEAITTQNYAQALGPVTDALNSGVAPAHFLHDLTL  289 (462)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             999999998389999999999999849999999999999


No 141
>PRK06696 uridine kinase; Validated
Probab=97.41  E-value=0.0009  Score=48.99  Aligned_cols=51  Identities=29%  Similarity=0.432  Sum_probs=41.8

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf             0258841899623443334688999999998614895078205422100477
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE  146 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e  146 (461)
                      ..+++|.+|-+.|+.||||||.+.+||..+.. .|..|.++..|-|=-....
T Consensus        21 ~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~-~G~~V~~v~~Ddf~~~~~~   71 (227)
T PRK06696         21 LNLTRPLRVAIDGITASGKTTFANELAEEIKK-RGRPVIRASIDDFHNPKVI   71 (227)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHH
T ss_conf             59998689997789987879999999999974-6994899715443473777


No 142
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.41  E-value=0.00043  Score=51.42  Aligned_cols=80  Identities=20%  Similarity=0.164  Sum_probs=44.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      .|+++|++|||||||++-+..++-....+++.-+ -|.     +|-+  +.. ...-+...+.+.|.... .+++..+..
T Consensus         3 liLitG~TGSGKTTtl~all~~i~~~~~~~IiTi-EDP-----iE~~--~~~-~~~~i~q~e~g~~~~sf-~~~lr~aLR   72 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI-EDP-----IEFV--HES-KRSLINQREVGLDTLSF-ENALKAALR   72 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE-CCC-----HHHH--CCC-CCEEEEECCCCCCCCCH-HHHHHHHHH
T ss_conf             8999899999799999999985363788369996-473-----7752--367-64488733307886379-999999985


Q ss_pred             CCCCEEEEEC
Q ss_conf             1588699833
Q gi|254780711|r  182 GGYDAVILDT  191 (461)
Q Consensus       182 ~~~D~iiiDT  191 (461)
                      ..-|+|+|.-
T Consensus        73 ~~PDvI~vGE   82 (198)
T cd01131          73 QDPDVILVGE   82 (198)
T ss_pred             HCCCEEECCC
T ss_conf             4888575277


No 143
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.40  E-value=0.0011  Score=48.38  Aligned_cols=52  Identities=27%  Similarity=0.292  Sum_probs=41.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT  159 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~  159 (461)
                      .|+.|..|+||||.+..+++...+ .|.+|+.++++--    .+|+...+..+|.++
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~-~ge~~lyis~eE~----~~~l~~~~~~~g~d~   53 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEES----PEELIENAESLGWDL   53 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCC----HHHHHHHHHHCCCCH
T ss_conf             158768999999999999999987-6997899995079----999999999839985


No 144
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.40  E-value=0.00026  Score=53.12  Aligned_cols=101  Identities=30%  Similarity=0.396  Sum_probs=61.2

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      ++++.||.|.|+.||||||-+-+|..+|.. .+.++.+.-.|..|-       .+.. .   -|   +..|-...+++..
T Consensus         4 ~~kg~viW~TGLsGSGKTTiA~~l~~~L~~-~g~~~~~LDGD~lR~-------~~~~-~---gf---s~~~R~~n~~r~~   68 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKL-KYSNVIYLDGDELRE-------IFGH-S---GY---DKESRIEMALKRA   68 (176)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHH-------HHCC-C---CC---CHHHHHHHHHHHH
T ss_conf             888679997899999899999999999997-599779988689998-------7365-8---98---9999999999999


Q ss_pred             HHHH---HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CCCCCC
Q ss_conf             9997---4158869983344222112468999999851385--110003
Q gi|254780711|r  177 QSAR---DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNP--HEILLV  220 (461)
Q Consensus       177 ~~a~---~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p--~e~~lV  220 (461)
                      +.|+   +++ -+||+.+..       ...+.++..+..-+  .|+++=
T Consensus        69 ~lak~l~~~g-~~vIvs~is-------p~~~~R~~~R~~~~~~~EVyv~  109 (176)
T PRK05541         69 KLAAFLADQG-MIVIVTTIS-------MFNEIYAYNRKHLPNYFEVYLK  109 (176)
T ss_pred             HHHHHHHHCC-CCEEEEECC-------CCHHHHHHHHHHCCCCEEEEEE
T ss_conf             9999986469-803675227-------9899999999748876899994


No 145
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.38  E-value=0.0021  Score=46.20  Aligned_cols=78  Identities=24%  Similarity=0.294  Sum_probs=51.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-
Q ss_conf             8996234433346889999999986148950782054221004779999851034742223321036899999999997-
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR-  180 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~-  180 (461)
                      ||-|.|+.||||||-+-+|..++.+ ++.++.++-.|..|.+       +...++   |   ...|-...++.....|+ 
T Consensus         1 ViW~tGLsgsGKTTlA~~l~~~L~~-~~~~~~~lDGD~iR~~-------l~~~lg---y---s~~~R~~n~~r~~~lak~   66 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQ-RGRPVYVLDGDNVRHG-------LNKDLG---F---SREDREENIRRIAEVAKL   66 (149)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHHH-------HCCCCC---C---CHHHHHHHHHHHHHHHHH
T ss_conf             9898799999999999999999998-6997599774889977-------365559---8---878899999999999999


Q ss_pred             -HCCCCEEEEECCC
Q ss_conf             -4158869983344
Q gi|254780711|r  181 -DGGYDAVILDTAG  193 (461)
Q Consensus       181 -~~~~D~iiiDTaG  193 (461)
                       .+.-..||+.+..
T Consensus        67 l~~qg~~VIvs~is   80 (149)
T cd02027          67 LADAGLIVIAAFIS   80 (149)
T ss_pred             HHHCCCEEEEECCC
T ss_conf             98379827884167


No 146
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.38  E-value=0.00092  Score=48.93  Aligned_cols=85  Identities=21%  Similarity=0.207  Sum_probs=52.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC----CCCCCCCC--CC----HHHHHH
Q ss_conf             996234433346889999999986148950782054221004779999851034----74222332--10----368999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ----VDTLEVIP--EQ----SPEKIA  172 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~----v~~~~~~~--~~----dp~~i~  172 (461)
                      |.++|=-|+||||.++-||.++.+ ++++|+++-+|--     +=-..++....    +.+.....  ++    -+-.+.
T Consensus         2 ia~~GKGGvGKtt~~~~la~~l~~-~g~~vl~iD~Dp~-----dlpe~~~~~~~~~~~l~~lg~~~~~g~GC~C~~n~ll   75 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADPD-----DLPERLSVEVGEIKLLLVMGMGRPGGEGCYCPENALL   75 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC-----CCHHHHCEECCCCCEEEEEECCCCCCCCEECCHHHHH
T ss_conf             789889977499999999999997-8996999989897-----1235542331787079999734358994088257899


Q ss_pred             HHHHHHHHHCCCCEEEEECCC
Q ss_conf             999999974158869983344
Q gi|254780711|r  173 IRATQSARDGGYDAVILDTAG  193 (461)
Q Consensus       173 ~~a~~~a~~~~~D~iiiDTaG  193 (461)
                      ++-+++...+++|+|++||.-
T Consensus        76 ~~~l~~l~~~~~~~VvvD~eA   96 (116)
T cd02034          76 NALLRHLVLTRDEQVVVDTEA   96 (116)
T ss_pred             HHHHHHHCCCCCCEEEEECCC
T ss_conf             999999706799899996785


No 147
>PRK05595 replicative DNA helicase; Provisional
Probab=97.36  E-value=0.022  Score=38.46  Aligned_cols=60  Identities=28%  Similarity=0.346  Sum_probs=44.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCC
Q ss_conf             189962344333468899999999861489507820542210047799--9985103474222332
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIP  164 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~  164 (461)
                      ..|.+.|-.|.|||+.+--+|.+...+.|++|++.+..--    .+||  +.+|...+|+......
T Consensus       202 dLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEMs----~~ql~~R~ls~~s~i~~~~i~~  263 (444)
T PRK05595        202 DMILIAARPSMGKTTFALNIAEYAALREGKSVVIFSLEMS----KEQLAYKLLCSEANVDMLRLRT  263 (444)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHHCCCCCCCCCC
T ss_conf             7799985798980799999999999866993799958899----9999999999646988442326


No 148
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.36  E-value=0.013  Score=40.03  Aligned_cols=170  Identities=20%  Similarity=0.244  Sum_probs=96.1

Q ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEE--ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf             996234-43334688999999998614895078--2054221004779999851034742223321-0368999999999
Q gi|254780711|r  103 IMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILM--ASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIAIRATQS  178 (461)
Q Consensus       103 IllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~l--v~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~~~a~~~  178 (461)
                      |++.|+ -||||||-+.=|++.|+++ |.+|.-  +.-|-     +|. .-+....|.|++....- -.+.. ++...  
T Consensus         4 ilIAa~~SgsGKTtvt~gL~~aL~~r-G~~Vq~FK~GPDY-----IDP-~~h~~a~G~~~~NLD~~m~~~~~-v~~~~--   73 (432)
T PRK13896          4 VVLAGTSSGVGKTVATLAVLQALADA-GYDVQPAKAGPDF-----IDP-SHHEAVVDTPSRSLDPWLSGEDG-MRRTY--   73 (432)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCC-----CCH-HHHHHHHCCCCCCCCHHHCCHHH-HHHHH--
T ss_conf             89977899998999999999999978-4963766668475-----198-99999968984468910189899-99999--


Q ss_pred             HHHCCCCEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCHH-CCHHHHHHHHHHHHH-------CCCCCEEEE
Q ss_conf             974158869983344222112--4689999998513851100031011-122568888988763-------584407764
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHIND--SLMQEISEIKSLTNPHEILLVADAL-TGQDAVHLARNFDKI-------VDLTGIILT  248 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~--~lm~El~~i~~~~~p~e~~lV~da~-~Gq~a~~~a~~F~~~-------~~i~giIlT  248 (461)
                       .....|+.||.-.=-+ .|.  .=-.|+.++.+.    -++||+|+. +.+.+..+++-|.+.       +.|-|||+.
T Consensus        74 -~~~~aDiaviEGvMGL-yDG~~~Sta~lA~~l~~----PVvLVvd~~~~~~s~aA~v~G~~~f~~~~~~d~~iaGVIlN  147 (432)
T PRK13896         74 -WRGTGDVCVVEGMMGL-YDGTVASTAAVAEELDL----PVVLVVDAKAGMESVAATALGFQAYADRAGVDIDVAGVLAQ  147 (432)
T ss_pred             -HHCCCCEEEEEECCCC-CCCCCCCHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf             -7279986999612324-57887758999998499----98999933201888999999999724124765247668842


Q ss_pred             ECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             1157663303677788847873026158672321001368899877358
Q gi|254780711|r  249 RMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM  297 (461)
Q Consensus       249 KlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm  297 (461)
                      ++-+......+-.+... ++|  .+|.=-+.+++.      +-+|=||+
T Consensus       148 ~v~s~rh~~~l~~al~~-~i~--vlG~lPr~~~l~------lp~RHLGL  187 (432)
T PRK13896        148 RAHGGRHADGIRDALPD-ELT--YFGRVPPRSDLE------IPDRHLGL  187 (432)
T ss_pred             CCCCHHHHHHHHHHHHC-CCC--EEEEECCCCCCC------CCCCCCCC
T ss_conf             67758899999999870-894--898842477789------84102598


No 149
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=97.35  E-value=0.0025  Score=45.60  Aligned_cols=163  Identities=16%  Similarity=0.139  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99999998718774210002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r   77 IVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ  156 (461)
Q Consensus        77 iv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~  156 (461)
                      -+.+.+.+.|..... .......|..|.+||=..+||.|-+    +.+.. +.+ + +|+                   +
T Consensus       189 dLld~i~~~l~~~~~-~~~~~~~~~rIAIvGrPNvGKStL~----N~llg-~~r-~-ivs-------------------~  241 (474)
T PRK03003        189 DLLDAVLAALPEVPE-VGSAVGGPRRVALVGKPNVGKSSLL----NKLAG-EER-S-VVH-------------------D  241 (474)
T ss_pred             HHHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCHHHHH----HHHHC-CCC-E-EEC-------------------C
T ss_conf             999999974877664-4334577627999808998788999----99858-975-6-745-------------------8


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---HH
Q ss_conf             742223321036899999999997415886998334422-----2112468999999851385110003101112---25
Q gi|254780711|r  157 VDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN-----HINDSLMQEISEIKSLTNPHEILLVADALTG---QD  228 (461)
Q Consensus       157 v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~-----~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q~  228 (461)
                      +|    ..-.|++++.      +..++..++||||||--     ..+-+.+.-++.+..+-..|-++||+||+-|   ||
T Consensus       242 ~~----GTTRDsI~~~------~~~~~~~~~liDTAGiRrk~kv~~~iE~~s~~rtl~aI~~advvilviDa~egit~QD  311 (474)
T PRK03003        242 VA----GTTVDPVDSL------IELGGKVWRFVDTAGLRRKVGQASGHEFYASLRTHAAIDAAEVAVVLIDASEPLTEQD  311 (474)
T ss_pred             CC----CCCCCCEEEE------EEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHH
T ss_conf             99----8515440589------9999989999989876635533431458999999999873355799985465874999


Q ss_pred             HHHHHHHHHHHCCC-CCEEEEECCCCCCCC-HHH------HHHHHHCCCHHHEECCCC
Q ss_conf             68888988763584-407764115766330-367------778884787302615867
Q gi|254780711|r  229 AVHLARNFDKIVDL-TGIILTRMDGDGRGG-AAL------SMRTVTGKPIKAIGTGEK  278 (461)
Q Consensus       229 a~~~a~~F~~~~~i-~giIlTKlD~~akgG-~al------s~~~~~~~PI~fig~GE~  278 (461)
                       ..+|..-.+. +- -=+++.|.|--.... ..+      .......+||.||+.=.+
T Consensus       312 -~~Ia~~v~~~-gk~~IivvNKwDLv~~~~~~~~~~~i~~~l~~~~~~piv~ISA~~g  367 (474)
T PRK03003        312 -QRVLSMVIEA-GRALVLAFNKWDLVDEDRRYYLEREIDRELAQVRWAPRVNISAKTG  367 (474)
T ss_pred             -HHHHHHHHHH-CCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf             -9999999980-9957999971441686789999999986455448985699981048


No 150
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.34  E-value=0.0014  Score=47.49  Aligned_cols=129  Identities=22%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEECC----CCCCCH------HHHHHHHHHHCCCCCC-CC-CCCCCHHH
Q ss_conf             996234433346889999999986148950-78205----422100------4779999851034742-22-33210368
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKI-LMASL----DVHRPA------AQEQLRYLGEQIQVDT-LE-VIPEQSPE  169 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV-~lv~~----Dt~R~a------A~eQL~~~a~~~~v~~-~~-~~~~~dp~  169 (461)
                      |.+.|..|+||||-+-|++..|+. .+.+| ++.+-    +-.|.|      +-.+=..+|. .+.+. .. ..+.-++.
T Consensus         2 i~ITG~pGvGKTTli~kv~~~l~~-~~~~v~GF~T~evre~g~R~GF~iv~l~~g~~~~la~-~~~~~~~~vGky~v~~~   79 (168)
T pfam03266         2 IFITGPPGVGKTTLVKKVIELLKS-EGVKVGGFYTPEVREGGRRIGFDIVDLASGERGPLAR-VGGVSGPRVGKYVVNLE   79 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCEECCCCEEEEEEEECCCCCEEEEEE-ECCCCCCCCCCCEECHH
T ss_conf             899789998899999999999986-7970748993021258937899999904782677444-06887754577166689


Q ss_pred             H---HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf             9---999999999741588699833442221124689999998513851-100031011122568888988763
Q gi|254780711|r  170 K---IAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADALTGQDAVHLARNFDKI  239 (461)
Q Consensus       170 ~---i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da~~Gq~a~~~a~~F~~~  239 (461)
                      .   ++-.++..+. ..+|+++||--|++......+.+  .+.++.+++ -++.|+..-.   -...++.+...
T Consensus        80 ~fe~~~~~~L~~a~-~~~dlivIDEIG~mEl~s~~F~~--~v~~~l~~~~~vl~ti~~~~---~~~~v~~i~~~  147 (168)
T pfam03266        80 EFEEIALPALRRAL-EEADLIIIDEIGPMELKSPKFRE--AIEEVLSSNKPVLAVVHRRS---DSPLVERIRRR  147 (168)
T ss_pred             HHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHHH--HHHHHHCCCCCEEEEEEECC---CCHHHHHHHCC
T ss_conf             99999999998406-68989999763145331499999--99999669997999997258---98389997417


No 151
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=97.34  E-value=0.016  Score=39.37  Aligned_cols=179  Identities=15%  Similarity=0.127  Sum_probs=101.9

Q ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHHCCC-----CEEEECC----CCCCCHHHHHHHHHHHCCC-----CCCCCCCCC--
Q ss_conf             996234-4333468899999999861489-----5078205----4221004779999851034-----742223321--
Q gi|254780711|r  103 IMLVGL-QGSGKTTTTAKIAYHLKTLKKK-----KILMASL----DVHRPAAQEQLRYLGEQIQ-----VDTLEVIPE--  165 (461)
Q Consensus       103 IllvGl-~GsGKTTT~aKLA~~~~~~~~~-----kV~lv~~----Dt~R~aA~eQL~~~a~~~~-----v~~~~~~~~--  165 (461)
                      +++.|- +++|||..++-|++.++.+ |+     |+.-..|    |..|.+-...|+..+...-     -|+......  
T Consensus         5 ~FITGTDTdVGKT~vsaaL~~~l~~~-G~~v~~~KPVasG~~~~~~g~~~~Da~~l~~~~~~~~~~~~vnP~~~~~~~aa   83 (231)
T PRK12374          5 FFITGTDTSVGKTVVSRALLQALASQ-GKSVAGYKPVAKGSKETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESS   83 (231)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC
T ss_conf             79987899953999999999999978-99488885688399668998724789999987378999887197668866577


Q ss_pred             ------CHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCH-HHHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHHHHHH
Q ss_conf             ------036899999999997415886998334422--211-2468999999851385110003101112--25688889
Q gi|254780711|r  166 ------QSPEKIAIRATQSARDGGYDAVILDTAGRN--HIN-DSLMQEISEIKSLTNPHEILLVADALTG--QDAVHLAR  234 (461)
Q Consensus       166 ------~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~--~~d-~~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~~~a~  234 (461)
                            -|.. ...+++... .+.+|+++|.-||-.  +.+ ...+..   +....+ -.++||.+.-.|  ..++=.++
T Consensus        84 ~~~~~~id~~-~i~~~~~~l-~~~~d~vlVEGAGG~~vPl~~~~~~~D---l~~~l~-lPVILV~~~~LG~INHtLLT~e  157 (231)
T PRK12374         84 VAHSCPINYT-LISNGLANL-TDKVDHVVVEGTGGWRSLMNDLRPLSE---WVVQEQ-LPVLMVVGIQEGCINHALLTAQ  157 (231)
T ss_pred             HHHCCCCCHH-HHHHHHHHH-HHHCCEEEEECCCCEEECCCCCCHHHH---HHHHCC-CCEEEEECCCCCHHHHHHHHHH
T ss_conf             4454857899-999999998-855797999779862130476514999---999839-9999998898684889999999


Q ss_pred             HH-HHHCCCCCEEEEECCCCCCC--CHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHH
Q ss_conf             88-76358440776411576633--0367778884787302615867232100136889987
Q gi|254780711|r  235 NF-DKIVDLTGIILTRMDGDGRG--GAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANR  293 (461)
Q Consensus       235 ~F-~~~~~i~giIlTKlD~~akg--G~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~r  293 (461)
                      +- +..+++-|+|+-++|++-..  -..-++...++.|+  +|   .+.-|..++|+.++..
T Consensus       158 al~~~gl~l~G~I~N~~~p~~~~~~e~i~~L~~~~~~P~--LG---~iP~l~~~~~~~~~~~  214 (231)
T PRK12374        158 AIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPL--IG---ELPYLPRAEQRELGQY  214 (231)
T ss_pred             HHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCE--EE---ECCCCCCCCHHHHHHH
T ss_conf             999789957999998367970467889999998559997--88---6899999898999975


No 152
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.31  E-value=0.0028  Score=45.26  Aligned_cols=133  Identities=20%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCC------CCCCCCCCC--------
Q ss_conf             1899623443334688999999998614-8950782054221004779999851034------742223321--------
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQ------VDTLEVIPE--------  165 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~------v~~~~~~~~--------  165 (461)
                      ..+++.+++|+|||++...++..+..+. +.+|++++ .+ |+-+.++.+.+.+..+      +.++.....        
T Consensus        25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (201)
T smart00487       25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLV-PT-RELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLE  102 (201)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CC-HHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf             9889989999609999999999986338997599990-85-999999998860102102044556524773799999997


Q ss_pred             -C--H-----HHHHHHHHHHH--HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHH
Q ss_conf             -0--3-----68999999999--974158869983344222112468999999851385110003101112256888898
Q gi|254780711|r  166 -Q--S-----PEKIAIRATQS--ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARN  235 (461)
Q Consensus       166 -~--d-----p~~i~~~a~~~--a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~  235 (461)
                       .  +     +..+ .+.+..  .....+++||||=|=+.... .-...+..+.....+.-.++.+.||...+..+....
T Consensus       103 ~~~~~i~i~t~~~l-~~~~~~~~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~  180 (201)
T smart00487      103 SGKTDILVTTPGRL-LDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLEL  180 (201)
T ss_pred             CCCCCEEEECHHHH-HHHHHHCCCCCCCCEEEEEECHHHHHCC-CCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf             59998999558999-9999727545254319999896775125-709999999996799997899924898689999999


Q ss_pred             HH
Q ss_conf             87
Q gi|254780711|r  236 FD  237 (461)
Q Consensus       236 F~  237 (461)
                      |.
T Consensus       181 ~~  182 (201)
T smart00487      181 FL  182 (201)
T ss_pred             HC
T ss_conf             78


No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily.  BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants.  BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well.  The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli.  It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes.  It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes.  In addition, BipA from enteropathogenic E. co
Probab=97.29  E-value=0.0048  Score=43.44  Aligned_cols=152  Identities=19%  Similarity=0.240  Sum_probs=74.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             899623443334688999999998614-8950782054221004779999851034742223321036899999999997
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
                      -|.++|--++||||.+..|.+...... ...+---..|..   ..||-+      |+.+.....             .+.
T Consensus         4 Nv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~---~~E~er------giTI~~~~~-------------~~~   61 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSN---DLERER------GITILAKNT-------------AVT   61 (194)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCC---HHHHHC------CCCEEEEEE-------------EEE
T ss_conf             8999906898799999999997487630465216861475---888872------876334589-------------999


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHHHHHHCCCCCEEEEECCC-CC
Q ss_conf             41588699833442221124689999998513851100031011122-----5688889887635844077641157-66
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARNFDKIVDLTGIILTRMDG-DG  254 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~F~~~~~i~giIlTKlD~-~a  254 (461)
                      .+++-+-+|||+|-    .+...|+..-.+++  |-.+||+||.-|-     .+...|..++  +++ =++++|+|- ++
T Consensus        62 ~~~~~~n~IDtPGH----~dF~~~~~~~~~~~--D~ailVVdA~~Gv~~QT~~~l~~a~~~~--~~~-iv~iNK~D~~~a  132 (194)
T cd01891          62 YKDTKINIVDTPGH----ADFGGEVERVLSMV--DGVLLLVDASEGPMPQTRFVLKKALELG--LKP-IVVINKIDRPDA  132 (194)
T ss_pred             ECCEEEEEEECCCC----HHHHHHHHHHHHHC--CEEEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEECCCCCCC
T ss_conf             89988999989984----77777898776434--4678986537897589999999998729--974-998856458988


Q ss_pred             CCCHHHHHHHH-----------HCCCHHHEE--CCCCCCCCCC
Q ss_conf             33036777888-----------478730261--5867232100
Q gi|254780711|r  255 RGGAALSMRTV-----------TGKPIKAIG--TGEKINDLEN  284 (461)
Q Consensus       255 kgG~als~~~~-----------~~~PI~fig--~GE~~~dle~  284 (461)
                      +.=-..+-...           ...||..++  +|...|+++.
T Consensus       133 ~~~~v~~ei~~~~~~~~~~~~~~~~pii~~SA~~G~~~d~~~~  175 (194)
T cd01891         133 RPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED  175 (194)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf             8999999999999863999333588578725655335778865


No 154
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=97.28  E-value=0.013  Score=40.09  Aligned_cols=208  Identities=19%  Similarity=0.134  Sum_probs=114.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH------------HHHHHHHH--HC-----------C
Q ss_conf             18996234433346889999999986148950782054221004------------77999985--10-----------3
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA------------QEQLRYLG--EQ-----------I  155 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA------------~eQL~~~a--~~-----------~  155 (461)
                      .-|.+.|=-|.||+||++-|++-|.. .|+||++|.||--.-.-            .+.++.-.  +.           -
T Consensus         5 r~IAiYGKGGIGKSTtssNlsAAlA~-~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G~~   83 (293)
T PRK13234          5 RQIAFYGKGGIGKSTTSQNTLAALVE-MGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK   83 (293)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCC
T ss_conf             57999779844587789999999997-79969997489831656876289999708899876498121538789743779


Q ss_pred             CCCCCCCC---CCCH----HHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HC
Q ss_conf             47422233---2103----6899999999997-4158869983344222112468999999851385110003101--11
Q gi|254780711|r  156 QVDTLEVI---PEQS----PEKIAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LT  225 (461)
Q Consensus       156 ~v~~~~~~---~~~d----p~~i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~  225 (461)
                      ||-++.+.   ++..    -+-.+.+-++... .+.+|+|+.|..|-----     ...-=.+.-..+++++|-++  |.
T Consensus        84 gI~CVEsGGPePGvGCAGRGIitai~~Le~lga~ed~D~V~yDVLGDVVCG-----GFAmPir~g~A~evyIVtSge~ms  158 (293)
T PRK13234         84 GIKCVESGGPEPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCG-----GFAMPIRENKAQEIYIVMSGEMMA  158 (293)
T ss_pred             CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC-----CCCCCCCCCCCCEEEEEECCCHHH
T ss_conf             848976899899888777131467888877187657999999567766514-----755665458876899994671879


Q ss_pred             CHHHHHHHHHHHHH-----CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf             22568888988763-----5844077641157663303677788847873026158672321001368899877358627
Q gi|254780711|r  226 GQDAVHLARNFDKI-----VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV  300 (461)
Q Consensus       226 Gq~a~~~a~~F~~~-----~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~  300 (461)
                      =+.|-|+++.-++.     +.+.|+|....+.+.----+=..+..++.||...         -|.++.--.+.+-|    
T Consensus       159 lyAANnI~~~i~~~~~~g~~rlgGlI~N~r~~~~e~~~v~~fa~~~gt~ii~~---------IPrs~~v~~aE~~~----  225 (293)
T PRK13234        159 LYAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAKRLGSKLIHF---------VPRDNIVQHAELRR----  225 (293)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEE---------CCCCHHHHHHHHCC----
T ss_conf             99999999999998632696246899717898537999999999849937997---------79968899999739----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             889998742112678998886531046
Q gi|254780711|r  301 VSLVEKAARNLNEKQAALTAKKIAKGK  327 (461)
Q Consensus       301 ~~l~e~~~~~~d~~~~~~l~~k~~~g~  327 (461)
                      ++++|.+++.---+.-.+|+++|..+.
T Consensus       226 ~TviE~~P~s~~A~~Yr~LA~~I~~n~  252 (293)
T PRK13234        226 MTVIEYAPDSKQAGEYRALAEKIHANS  252 (293)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf             777896889879999999999998478


No 155
>KOG1532 consensus
Probab=97.28  E-value=0.0019  Score=46.45  Aligned_cols=201  Identities=21%  Similarity=0.268  Sum_probs=98.1

Q ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-----CCHHH---------HHHHHHHHCCCCCCCC
Q ss_conf             258841899623443334688999999998614895078205422-----10047---------7999985103474222
Q gi|254780711|r   96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH-----RPAAQ---------EQLRYLGEQIQVDTLE  161 (461)
Q Consensus        96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~-----R~aA~---------eQL~~~a~~~~v~~~~  161 (461)
                      ...+|.+|+.+|--||||||.+-+|-.|+..+ +.++-+|..|--     -||-+         |-+++|.---|--+. 
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~-~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~-   92 (366)
T KOG1532          15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAK-KTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV-   92 (366)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH-
T ss_conf             55687079999447788413999999998623-6998088678888548886677566543099999983889986403-


Q ss_pred             CCCCCH--HHHH--HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHH
Q ss_conf             332103--6899--999999997415886998334422211246899999985138511000310111225688889887
Q gi|254780711|r  162 VIPEQS--PEKI--AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFD  237 (461)
Q Consensus       162 ~~~~~d--p~~i--~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~  237 (461)
                        ..-+  ...+  +-.-++.. .+.+|++||||+|-.                    | +|+-.|. |   .-+.++|.
T Consensus        93 --TsLNLF~tk~dqv~~~iek~-~~~~~~~liDTPGQI--------------------E-~FtWSAs-G---sIIte~la  144 (366)
T KOG1532          93 --TSLNLFATKFDQVIELIEKR-AEEFDYVLIDTPGQI--------------------E-AFTWSAS-G---SIITETLA  144 (366)
T ss_pred             --HHHHHHHHHHHHHHHHHHHH-HCCCCEEEECCCCCE--------------------E-EEEECCC-C---CCHHHHHH
T ss_conf             --35899998789999999974-220477997488806--------------------8-9984278-5---01586676


Q ss_pred             HHCCCCCEEEEECCCCCCCC---------HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             63584407764115766330---------367778884787302615867232100136889987735862788999874
Q gi|254780711|r  238 KIVDLTGIILTRMDGDGRGG---------AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAA  308 (461)
Q Consensus       238 ~~~~i~giIlTKlD~~akgG---------~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~  308 (461)
                      ...|  -||+--+|....--         -|-|+.+.|++|..-+=+--.+-|-      .||-      ++.+=.|..|
T Consensus       145 ss~p--tvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~------~fa~------eWm~DfE~Fq  210 (366)
T KOG1532         145 SSFP--TVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDS------EFAL------EWMTDFEAFQ  210 (366)
T ss_pred             HCCC--EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC------HHHH------HHHHHHHHHH
T ss_conf             1398--599999447767884169988999999998626876999714344561------8899------9999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             21126789988865310463799999999998
Q gi|254780711|r  309 RNLNEKQAALTAKKIAKGKFDLEDLAEQFRQT  340 (461)
Q Consensus       309 ~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i  340 (461)
                      +++.+.+..-+..-.-+=...|+.||.+++.+
T Consensus       211 eAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv  242 (366)
T KOG1532         211 EALNEAESSYMSNLTRSMSLMLEEFYRSLRTV  242 (366)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf             99976303266776654798999998317557


No 156
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.27  E-value=0.011  Score=40.56  Aligned_cols=160  Identities=21%  Similarity=0.306  Sum_probs=92.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH
Q ss_conf             12699899999999999998718774210002588418996234433346889999999986148950782054221004
Q gi|254780711|r   65 LRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA  144 (461)
Q Consensus        65 ~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA  144 (461)
                      ..+.+|.+.+.+++... .+..    .  .+.+.. .-++|.|..|+|||--+.=+|+.+.. +|++|+.+++.-+    
T Consensus       156 ~~~~sprenm~~i~~~~-~~fi----~--~F~~~~-~nLlf~G~~G~GKTfLa~~IA~ell~-~g~sViy~ta~~L----  222 (330)
T PRK06835        156 DEPISPRENMENILEKC-LNFI----K--NFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLD-RGKTVIYRTSDEL----  222 (330)
T ss_pred             CCCCCHHHHHHHHHHHH-HHHH----H--HCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEHHHH----
T ss_conf             88989899999999999-9998----7--247888-86698899999889999999999998-7994999629999----


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             77999985103474222332103689999999999741588699833442221124689999998513851100031011
Q gi|254780711|r  145 QEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL  224 (461)
Q Consensus       145 ~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~  224 (461)
                      ++.|+.+-       |.. .+ +-    .+.++..  ..+|++|||--|--+..+.-..+|=.+                
T Consensus       223 ~~~l~~~~-------~~~-~~-~~----~~~~~~l--~~~DLLIIDDLG~E~~t~~~~~~Lf~i----------------  271 (330)
T PRK06835        223 IENLREIR-------FNN-DN-DA----PELEDLL--INCDLLIIDDLGTESITEFSKTELFNL----------------  271 (330)
T ss_pred             HHHHHHHH-------CCC-CC-CH----HHHHHHH--HHCCEEEEECCCCCCCCHHHHHHHHHH----------------
T ss_conf             99999975-------457-64-48----9999999--618989972103455886899999999----------------


Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf             12256888898876358440776411576633036777888478730261586723210013688998773586278899
Q gi|254780711|r  225 TGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLV  304 (461)
Q Consensus       225 ~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~  304 (461)
                                                         +.-+...++|+. |+|-=.+++|...+.+|+.|||+|+=-+..+.
T Consensus       272 -----------------------------------IN~R~~~~k~tI-ITTNl~~~eL~~~y~eRi~SRi~~~~~~~~~~  315 (330)
T PRK06835        272 -----------------------------------INKRLLMNKKMI-ISTNLSLEELLKTYSERIASRLLGNFTLLKFY  315 (330)
T ss_pred             -----------------------------------HHHHHHCCCCEE-EECCCCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf             -----------------------------------999986799979-98899989999987489999998185499852


No 157
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.26  E-value=0.00037  Score=51.95  Aligned_cols=40  Identities=33%  Similarity=0.370  Sum_probs=35.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             89962344333468899999999861489507820542210
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP  142 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~  142 (461)
                      +|.++|..||||||.+.+|+..+.. .+.+|.+++.|.|--
T Consensus         1 iIgIaG~SgSGKTT~a~~L~~~l~~-~~~~~~vis~D~yy~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRV-NGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCC
T ss_conf             9899898977899999999999846-488539995466645


No 158
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.24  E-value=0.002  Score=46.40  Aligned_cols=108  Identities=27%  Similarity=0.335  Sum_probs=76.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-C-----CCCCCCCEEEEEEC
Q ss_conf             99999852469699999999999998303111269989999999999999871877421-0-----00258841899623
Q gi|254780711|r   34 IRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIE-L-----DLNAPSPLVIMLVG  107 (461)
Q Consensus        34 i~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~-l-----~~~~~~p~vIllvG  107 (461)
                      +.++|..|.|.+.++..+--.|++.+.++.+  .+-.++.+.+ ++..|.+--+++... .     -.....|.+||+=|
T Consensus        20 L~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~--~~v~~~eir~-~~~~l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGG   96 (299)
T COG2074          20 LARSLTAAGVDPDLAYSIAIEIQEELKKEGI--RLVTKDEIRE-VYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILIGG   96 (299)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC--EEEEHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             9888886146825899999999999975797--2761999999-999998732879999999999986157875999617


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             4433346889999999986148950782054221004779999851
Q gi|254780711|r  108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE  153 (461)
Q Consensus       108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~  153 (461)
                      +.|+||||-++-+|+.+-    -+ -++++|.-|    |=|+-...
T Consensus        97 asGVGkStIA~ElA~rLg----I~-~visTD~IR----EvlR~ii~  133 (299)
T COG2074          97 ASGVGKSTIAGELARRLG----IR-SVISTDSIR----EVLRKIIS  133 (299)
T ss_pred             CCCCCHHHHHHHHHHHCC----CC-EEECCHHHH----HHHHHHCC
T ss_conf             887772579999999729----86-100424799----99997379


No 159
>PRK04040 adenylate kinase; Provisional
Probab=97.23  E-value=0.0011  Score=48.32  Aligned_cols=170  Identities=21%  Similarity=0.263  Sum_probs=81.5

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC-CCC-------HHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             4189962344333468899999999861489507820542-210-------04779999851034742223321036899
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV-HRP-------AAQEQLRYLGEQIQVDTLEVIPEQSPEKI  171 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt-~R~-------aA~eQL~~~a~~~~v~~~~~~~~~dp~~i  171 (461)
                      +.+++++|+.|+||||.+.++...+..  +.++ +-..|. |+.       -.-|+|+.      +|.      .+-..+
T Consensus         2 ~k~VvvtGiPGvGKTTv~~~~~~~l~~--~~~~-vn~G~~M~e~A~~~glv~~RDemRk------L~~------~~q~~l   66 (189)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKE--DYKI-VNFGDVMLEVAKEEGLVEHRDEMRK------LPL------EEQKEL   66 (189)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCC--CCEE-EEHHHHHHHHHHHCCCCCCHHHHCC------CCH------HHHHHH
T ss_conf             418999758988789999999997235--8759-8677999999998177347788747------999------999999


Q ss_pred             HHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH---CCCCCEE
Q ss_conf             9999999974-158869983344222112468999-9998513851100031011122568888988763---5844077
Q gi|254780711|r  172 AIRATQSARD-GGYDAVILDTAGRNHINDSLMQEI-SEIKSLTNPHEILLVADALTGQDAVHLARNFDKI---VDLTGII  246 (461)
Q Consensus       172 ~~~a~~~a~~-~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~---~~i~giI  246 (461)
                      -+.|.+.-.. .+-..|||||-.--.+....+--| ..+.+.++|+.+++ +.|.- ++...  +.-++.   -++.+.-
T Consensus        67 Q~~Aa~~I~~~~~~~~ViIDTHa~Iktp~GylpGLP~~Vl~~L~P~~ivl-ieA~P-~eIl~--RR~~D~tR~RD~es~~  142 (189)
T PRK04040         67 QREAAERIAEMAGEGPVIVDTHATIKTPGGYLPGLPEWVLEELNPDVIVL-IEADP-DEILM--RRLRDPTRRRDVETEE  142 (189)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEE-EECCH-HHHHH--HHHCCCCCCCCCCCHH
T ss_conf             99999999983578728994452002688677899899998669988999-97588-99999--8842556689878899


Q ss_pred             EEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             6411576633036777888478730261586723210013688998773
Q gi|254780711|r  247 LTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL  295 (461)
Q Consensus       247 lTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL  295 (461)
                      --+..-..--.+|.+....+|+||+++-+       +++.|+.=|..|+
T Consensus       143 ~I~~hq~~nR~~a~ayavltga~Vkiv~N-------~e~~~e~Aa~~iv  184 (189)
T PRK04040        143 SIEEHQEMNRAAAMAYAVLTGATVKIVEN-------HEGLLEEAAEEIV  184 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCEEEEEEC-------CCCCHHHHHHHHH
T ss_conf             99999999999999999973984899978-------9998899999999


No 160
>KOG2743 consensus
Probab=97.23  E-value=0.0052  Score=43.16  Aligned_cols=148  Identities=21%  Similarity=0.207  Sum_probs=85.4

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC------CCCCCCHHHHH-----HHHHHHCC-CCCCCCCCCC
Q ss_conf             884189962344333468899999999861489507820------54221004779-----99985103-4742223321
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS------LDVHRPAAQEQ-----LRYLGEQI-QVDTLEVIPE  165 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~------~Dt~R~aA~eQ-----L~~~a~~~-~v~~~~~~~~  165 (461)
                      .-| |-.+.|--||||||-.-+++.   .+++|+|+++-      .|.-|+=+++|     -+.|-.-- |+-+.  ...
T Consensus        56 rIP-vtIITGyLGaGKtTLLn~Il~---~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCC--tVk  129 (391)
T KOG2743          56 RIP-VTIITGYLGAGKTTLLNYILT---GQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCC--TVK  129 (391)
T ss_pred             CCC-EEEEEECCCCCHHHHHHHHHC---CCCCCEEEEEHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEEE--EEC
T ss_conf             444-399973146786899999971---67885599970103650114677775034415799999864880899--854


Q ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCHHHHH-------HHHH
Q ss_conf             0368999999999974158869983344222112468999---99985138511000310111225688-------8898
Q gi|254780711|r  166 QSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEI---SEIKSLTNPHEILLVADALTGQDAVH-------LARN  235 (461)
Q Consensus       166 ~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El---~~i~~~~~p~e~~lV~da~~Gq~a~~-------~a~~  235 (461)
                      .+-+...-+-++  ++..+|.|++.|.| +.+-..+.+-.   ..+..-++-|-++-|+||--....++       +-++
T Consensus       130 ~~gvraie~lvq--kkGkfD~IllETTG-lAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA  206 (391)
T KOG2743         130 DNGVRAIENLVQ--KKGKFDHILLETTG-LANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEA  206 (391)
T ss_pred             CHHHHHHHHHHH--CCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHCCCCCCCCHHHH
T ss_conf             308999999984--67876469996047-888277888876446546740430389997436688653125865415788


Q ss_pred             HHHHCCCCCEEEEECCCCC
Q ss_conf             8763584407764115766
Q gi|254780711|r  236 FDKIVDLTGIILTRMDGDG  254 (461)
Q Consensus       236 F~~~~~i~giIlTKlD~~a  254 (461)
                      |.+..-.+.+|+.|.|--.
T Consensus       207 ~~QiA~AD~II~NKtDli~  225 (391)
T KOG2743         207 TRQIALADRIIMNKTDLVS  225 (391)
T ss_pred             HHHHHHHHEEEECCCCCCC
T ss_conf             8887541135640435567


No 161
>cd04165 GTPBP1_like GTPBP1-like.  Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown.  In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1.  In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma).  The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12.  Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6.  The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.22  E-value=0.0015  Score=47.20  Aligned_cols=69  Identities=17%  Similarity=0.208  Sum_probs=41.0

Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             9741588699833442221124689999998513851100031011122-----56888898876358440776411576
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARNFDKIVDLTGIILTRMDGD  253 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~F~~~~~i~giIlTKlD~~  253 (461)
                      +.....-+.+||++|-..+-.+++.    =.....||..+||++|..|-     +.+..+.+..  +++ -|++||+|-.
T Consensus        79 ~~~~~k~it~iD~pGH~~y~kt~i~----G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~--ip~-~vvitKiDl~  151 (224)
T cd04165          79 CEKSSKLVTFIDLAGHERYLKTTLF----GLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALN--IPV-FVVVTKIDLA  151 (224)
T ss_pred             ECCCCCEEEEEECCCHHHHHHHHHH----HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC--CCE-EEEEECCCCC
T ss_conf             1367867999978873999999998----76355689899993178897799999999999839--998-9999897768


Q ss_pred             C
Q ss_conf             6
Q gi|254780711|r  254 G  254 (461)
Q Consensus       254 a  254 (461)
                      .
T Consensus       152 ~  152 (224)
T cd04165         152 P  152 (224)
T ss_pred             C
T ss_conf             9


No 162
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21  E-value=0.031  Score=37.26  Aligned_cols=304  Identities=15%  Similarity=0.166  Sum_probs=145.1

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH---CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHH
Q ss_conf             5884189962344333468899999999861---48950782054221004779999851034742223321-0368999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTL---KKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIA  172 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~---~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~  172 (461)
                      ..-|+.++|.|+.|+||||++--+|..+--.   .+..  .-.|+..|.        .....-.+++..... ...++-+
T Consensus        34 ~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~p--C~~C~~C~~--------i~~g~~~DviEidaas~~gVd~I  103 (557)
T PRK07270         34 GKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEP--CNNCDICRD--------ITNGSLEDVIEIDAASNNGVDEI  103 (557)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC--CCCCHHHHH--------HHCCCCCCEEEECCCCCCCHHHH
T ss_conf             99540442108998689999999999957999899998--887779999--------87589997487347776788999


Q ss_pred             HHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHH----HHHHH-------
Q ss_conf             99999997----4158869983344222112468999999851385110003101112256888----89887-------
Q gi|254780711|r  173 IRATQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHL----ARNFD-------  237 (461)
Q Consensus       173 ~~a~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~----a~~F~-------  237 (461)
                      ++-.+.+.    ...|-|+|||-|-++..+.  ..-|-+..+.- |..++|++=++--+....+    ++.|+       
T Consensus       104 Rei~~~~~~~P~~~~yKV~IIDEah~Ls~~A--~NALLKtLEEP-P~~~vFIL~Ttep~kIl~TI~SRCQrf~F~~i~~~  180 (557)
T PRK07270        104 RDIRDKSTYAPSRATYKVYIIDEVHMLSTGA--FNALLKTLEEP-TENVVFILATTELHKIPATILSRVQRFEFKSIKTK  180 (557)
T ss_pred             HHHHHHHCCCCCCCCEEEEEECCHHHCCHHH--HHHHHHHHHCC-CCCEEEEEEECCHHHCCHHHHHHHHHCCCCCCCHH
T ss_conf             9999984238777883899971445349999--99899985289-98769999849947592888743000108889999


Q ss_pred             ------------HHCCCCCEEEEECCCCCCCC--HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf             ------------63584407764115766330--3677788847873026158672321001368899877358627889
Q gi|254780711|r  238 ------------KIVDLTGIILTRMDGDGRGG--AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL  303 (461)
Q Consensus       238 ------------~~~~i~giIlTKlD~~akgG--~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l  303 (461)
                                  +.+.++---+.-+-..|.||  -|||+-...   |.| +.|++++       ...|..+||.=|...|
T Consensus       181 ~i~~~L~~I~~~E~i~~~~~aL~~Ia~~a~G~mRdAlsiLdQ~---~s~-~~~~~it-------~~~v~~~~G~~~~~~l  249 (557)
T PRK07270        181 AIREHLAWILDKEGISFEVEALNLIARRAEGGMRDALSILDQA---LSL-SQDNQVT-------IAIAEEITGSISLLAL  249 (557)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH---HHC-CCCCCCC-------HHHHHHHHCCCCHHHH
T ss_conf             9999999999983998699999999997799687899999999---971-7999767-------9999999689989999


Q ss_pred             HHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHH------HHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHH
Q ss_conf             998742112678--998886531046379999999999------851148899999873134423432311167888889
Q gi|254780711|r  304 VEKAARNLNEKQ--AALTAKKIAKGKFDLEDLAEQFRQ------TQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINH  375 (461)
Q Consensus       304 ~e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~Ql~~------i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~  375 (461)
                      .+-+...++.+.  +-.....+...-.+...|.+.+-.      +-|.+|=.....-+      .  ......+...+-+
T Consensus       250 ~~l~~~~~~~d~~~~l~~~~~~~~~G~d~~~~~~dl~~~~Rdll~~k~~~~~~~~~~~------~--~~~~~~~~~~l~~  321 (557)
T PRK07270        250 DDYVAALSQQDATKALAALETIFDSGKSMSRFATDLLTYLRDLLIVKAGGENTHHSAV------F--DENLSLSQDRIFQ  321 (557)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH------H--HHHHCCCHHHHHH
T ss_conf             9999999817999999999999986999999999999999976741227745555676------7--8887069999999


Q ss_pred             HHHHHHCCCHHHHC--CCCCCCHHHHHHHHCCCC---------CCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99997458987860--841133578999723266---------7989999999999999999998606
Q gi|254780711|r  376 HIAIIASMTKEERA--NPSIIKHSRKKRIAAGSG---------TNAAKINKLLKLHRQVAEMMHSTQG  432 (461)
Q Consensus       376 ~~aII~SMT~~Er~--~P~ll~~SR~~RIA~GSG---------~~v~eVn~Llk~f~~m~kmmk~~~~  432 (461)
                      |..+++.--.+=|-  +|+++=.=-..+++...+         ....++..|-.+-.+.++-++....
T Consensus       322 ~i~~l~~~~~~~~~~~~p~i~lE~~~~kl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~  389 (557)
T PRK07270        322 MIDVVTSSLPEIKKGTHPKIYAEMMTIRLAEIEQIASQANLPGELTAEIATLKQELAQLKQQLSQLQS  389 (557)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999751478129999999998534565664335435788999999999999998753302


No 163
>CHL00181 cbbX CbbX; Provisional
Probab=97.20  E-value=0.023  Score=38.32  Aligned_cols=124  Identities=23%  Similarity=0.217  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf             98999999999999998524696999999999999983031112699899999999999998718774210002588418
Q gi|254780711|r   23 SETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLV  102 (461)
Q Consensus        23 ~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~v  102 (461)
                      +.+.++++|+|+-..    =|++.-|++.+..+...+.-                  +.+-+-.|     ++..+ ...-
T Consensus        10 ~~~~lee~L~eLd~e----liGL~~VK~~v~~l~~~~~~------------------~~~R~~~G-----l~~~~-~s~h   61 (287)
T CHL00181         10 NKTQIQEVLDELDEE----LIGLVPVKTRIREIAALLLV------------------DRLRKNLG-----LVSSS-PGLH   61 (287)
T ss_pred             HHCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHH------------------HHHHHHCC-----CCCCC-CCCE
T ss_conf             453499999999886----46969999999999999999------------------99999879-----99888-7653


Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9962344333468899999999861489-507820542210047799998510347422233210368999999999974
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKK-KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~-kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      .+|+|+.|.||||.+--+|..|...+-- +--++.++                 ..++.+.+.++...+ ..+.++.|..
T Consensus        62 ~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~-----------------r~dLvg~yvG~Ta~k-t~~~i~~a~G  123 (287)
T CHL00181         62 MSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVT-----------------RDDLVGQYIGHTAPK-TKEVLKKAMG  123 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC-----------------HHHHCCCCCCCCHHH-HHHHHHHCCC
T ss_conf             8887899867999999999999986995589589953-----------------588416353521699-9999996459


Q ss_pred             CCCCEEEEECCCCC
Q ss_conf             15886998334422
Q gi|254780711|r  182 GGYDAVILDTAGRN  195 (461)
Q Consensus       182 ~~~D~iiiDTaGR~  195 (461)
                         -|++||-|=.+
T Consensus       124 ---GVLfIDEAY~L  134 (287)
T CHL00181        124 ---GVLFIDEAYYL  134 (287)
T ss_pred             ---CEEEEECHHHH
T ss_conf             ---87998244653


No 164
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20  E-value=0.003  Score=44.98  Aligned_cols=27  Identities=30%  Similarity=0.379  Sum_probs=21.2

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             884189962344333468899999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHL  124 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~  124 (461)
                      .-++-+||.|..|+||||++-=||+-+
T Consensus        36 ~~~~a~lf~g~rg~gkt~~ar~~a~~l   62 (663)
T PRK08770         36 RVHHAFLFTGTRGVGKTTIARIFAKSL   62 (663)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             974047622799888889999999986


No 165
>PRK06526 transposase; Provisional
Probab=97.20  E-value=0.0044  Score=43.70  Aligned_cols=143  Identities=14%  Similarity=0.143  Sum_probs=82.0

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             999852469699999999999998303-11126998--999999999999987187742100025884189962344333
Q gi|254780711|r   36 RTFLEADVSLEVVQSFSKRVQEKAKGE-KILRSIQP--GQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSG  112 (461)
Q Consensus        36 ~aLLeaDV~~~vv~~~~~~Ik~k~~~~-~~~~~~~~--~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsG  112 (461)
                      ..|+++-+..+-.+.+-..++.--... +....++-  ...+-+..-.+|.        ...+...+.+ |+++|+.|+|
T Consensus        40 ~~Lle~E~~~R~~rr~~rrlk~A~fp~~ktLe~fd~~~~~~l~~~~i~~La--------~~~fi~~~~N-vil~G~~GtG  110 (254)
T PRK06526         40 AACLQREVAARESHGGEGRIRAARFPSRKSLEEFDFDHQRSLKRDTIAHLG--------TLDFVTGKEN-VVFLGPPGTG  110 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHH--------CCCHHHCCCC-EEEECCCCCC
T ss_conf             999999999999989999999779799889876786567898999999986--------3717765887-8998999986


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             46889999999986148950782054221004779999851034742223321036899999999997415886998334
Q gi|254780711|r  113 KTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTA  192 (461)
Q Consensus       113 KTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTa  192 (461)
                      ||--+.-||..... .|++|..+.++..    +++|..- +.         .++-     .+.+.  +-..+|++|||--
T Consensus       111 KThLA~Alg~~A~~-~G~~v~f~~~~~L----~~~L~~a-~~---------~g~~-----~~~~~--~l~~~dLLIiDe~  168 (254)
T PRK06526        111 KTHLAIGLGIRACQ-AGHRVLFATAAQW----VARLAAA-HH---------AGRL-----QDELV--KLGRIPLLIVDEV  168 (254)
T ss_pred             HHHHHHHHHHHHHH-CCCCEEEEEHHHH----HHHHHHH-HH---------CCCH-----HHHHH--HHHCCCEEEEECC
T ss_conf             89999999999998-6996799877999----9999998-85---------5809-----99999--8513687765021


Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             42221124689999998
Q gi|254780711|r  193 GRNHINDSLMQEISEIK  209 (461)
Q Consensus       193 GR~~~d~~lm~El~~i~  209 (461)
                      |..+.+..-.+-|-++.
T Consensus       169 g~~~~~~~~a~~lf~li  185 (254)
T PRK06526        169 GYIPFEAEAANLFFQLV  185 (254)
T ss_pred             CCCCCCHHHHHHHHHHH
T ss_conf             36447889999999999


No 166
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.19  E-value=0.0017  Score=46.97  Aligned_cols=38  Identities=11%  Similarity=0.098  Sum_probs=23.0

Q ss_pred             CCCCH-HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11335-789997232667989999999999999999998
Q gi|254780711|r  392 SIIKH-SRKKRIAAGSGTNAAKINKLLKLHRQVAEMMHS  429 (461)
Q Consensus       392 ~ll~~-SR~~RIA~GSG~~v~eVn~Llk~f~~m~kmmk~  429 (461)
                      .+|++ .=|.-+.++=|-+.+|-++-+.+.-...+++-.
T Consensus       425 ~lLDGD~~R~~l~~dLgfs~~dR~enirR~~~va~~~~~  463 (568)
T PRK05537        425 TLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITK  463 (568)
T ss_pred             EEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             995468887421557898988999999999999999985


No 167
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19  E-value=0.0086  Score=41.52  Aligned_cols=214  Identities=15%  Similarity=0.149  Sum_probs=94.2

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf             8841899623443334688999999998614895-07820542210047799998510347422233210-368999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA  175 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a  175 (461)
                      +-.+-+||.|..|+||||++-=||+-+--..+-. --+-.|+.        -+...+-.-++++...-.+ .-++-.++-
T Consensus        36 rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~--------C~~i~~g~~~d~iEiDaAS~~~vd~~r~l  107 (816)
T PRK07003         36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA--------CREIDEGRFVDYVEMDAASNRGVDEMAAL  107 (816)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH--------HHHHHCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf             8631475117898888899999999867899999897877555--------78775588775478635543576899999


Q ss_pred             ---HHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HH----HHHHHHHHH---------
Q ss_conf             ---99997-4158869983344222112468999999851385110003101112-25----688889887---------
Q gi|254780711|r  176 ---TQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QD----AVHLARNFD---------  237 (461)
Q Consensus       176 ---~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~----a~~~a~~F~---------  237 (461)
                         +.|+- ...|-|.|||-.-.+...  -+.-|-+..+.- |.++.|++ |||- |.    .+..+..|+         
T Consensus       108 ~~~~~y~p~~~r~KvyiiDEvHmls~~--afnalLKtlEep-P~hv~Fil-aTTd~~k~p~tilSRc~~f~l~~~~~~~i  183 (816)
T PRK07003        108 LERAVYAPVDARFKVYMIDEVHMLTNH--AFNAMLKTLEEP-PPHVKFIL-ATTDPQKIPVTVLSRCLQFNLKQMPAGHI  183 (816)
T ss_pred             HHHCCCCCCCCCEEEEEEECHHHCCHH--HHHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCCCHHHH
T ss_conf             986224786674479998415433999--999999840379-86648999-55880115288987776522367999999


Q ss_pred             ----------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf             ----------6358440----77641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r  238 ----------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL  303 (461)
Q Consensus       238 ----------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l  303 (461)
                                +.+.++-    +|--.-||+-|  -|||+...   -|.| |.|+--        +.-++.+||.=|-..+
T Consensus       184 ~~~l~~i~~~E~i~~e~~al~lia~~a~GsmR--Dalsl~dQ---aia~-~~g~~~--------~~~v~~mLG~~d~~~~  249 (816)
T PRK07003        184 VSHLERILGEERIAFEPQALRLLARAAQGSMR--DALSLTDQ---AIAY-SANEVT--------ETAVSGMLGALDQTYM  249 (816)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHH-CCCCCC--------HHHHHHHHCCCCHHHH
T ss_conf             99999999982997799999999997677378--88859999---9984-699737--------9999998588877899


Q ss_pred             HHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             998742112678--9988865310463799999999
Q gi|254780711|r  304 VEKAARNLNEKQ--AALTAKKIAKGKFDLEDLAEQF  337 (461)
Q Consensus       304 ~e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~Ql  337 (461)
                      +.-.....+.+-  .-.....+.....+|...+..|
T Consensus       250 ~~ll~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l  285 (816)
T PRK07003        250 VRLLDALAAADGPEILAIADEMSLRSLSFSTALQDL  285 (816)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             999999995589999999999998688999999999


No 168
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=97.19  E-value=0.0023  Score=45.86  Aligned_cols=218  Identities=19%  Similarity=0.184  Sum_probs=89.6

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCCHHHHHH
Q ss_conf             8841899623443334688999999998614895-0782054221004779999851034742223----3210368999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEV----IPEQSPEKIA  172 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~i~  172 (461)
                      .-.+-+||.|..|+||||++-=||+-+--..|-. --+..|..        -+...+.--++++..    ..+-|-..-.
T Consensus        36 ~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~--------c~~i~~~~~~d~~e~d~as~~~v~~~r~~  107 (705)
T PRK05648         36 RLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSV--------CREIDEGRFVDLIEVDAASRTKVEDTREL  107 (705)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH--------HHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf             8630465007898889899999999867789998897877600--------46662489776344515544788999999


Q ss_pred             HHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HH----HHHHHHHHH---------
Q ss_conf             99999997-4158869983344222112468999999851385110003101112-25----688889887---------
Q gi|254780711|r  173 IRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QD----AVHLARNFD---------  237 (461)
Q Consensus       173 ~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~----a~~~a~~F~---------  237 (461)
                      .+.+.|+- ...|-|.|||-.-.+...  -+.-|-+..+.- |.++.|++ |+|- |.    .+.-+..|+         
T Consensus       108 ~~~~~~~p~~~~~kv~~idevhmls~~--~fnallktleep-p~~v~f~~-att~~~k~p~t~~src~~~~~~~~~~~~~  183 (705)
T PRK05648        108 LDNVQYAPTRGRYKVYLIDEVHMLSSH--SFNALLKTLEEP-PPHVKFLL-ATTDPQKLPVTILSRCLQFSLKNMSPERV  183 (705)
T ss_pred             HHHCCCCCCCCCEEEEEEEHHHHCCHH--HHHHHHHHCCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCCCHHHH
T ss_conf             985551776774579998426541799--999998740479-75459998-42873537589997664302368999999


Q ss_pred             ----------HHCCCCCEEEEECCCCCCCC--HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHH
Q ss_conf             ----------63584407764115766330--367778884787302615867232100136889987735862788999
Q gi|254780711|r  238 ----------KIVDLTGIILTRMDGDGRGG--AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVE  305 (461)
Q Consensus       238 ----------~~~~i~giIlTKlD~~akgG--~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e  305 (461)
                                +.+.+..--+..+--.|.|+  -+||+...   -|.| |.| ++.       +.-+..+||.-|-..+.+
T Consensus       184 ~~~l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~dq---~~~~-~~~-~~~-------~~~v~~mlg~~~~~~~~~  251 (705)
T PRK05648        184 VEHLSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLTDQ---AIAF-GEG-KVL-------AADVRAMLGTLDHGQVYG  251 (705)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH---HHHC-CCC-CCC-------HHHHHHHHCCCCHHHHHH
T ss_conf             9999999997599778999999999748967779999999---9860-688-407-------999999858887789999


Q ss_pred             HHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             874211267899--8886531046379999999999
Q gi|254780711|r  306 KAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQFRQ  339 (461)
Q Consensus       306 ~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql~~  339 (461)
                      -.+...+.+-..  ...+.+..-..+|..++.++-.
T Consensus       252 l~~a~~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~  287 (705)
T PRK05648        252 VLQALLEGDARALLEAVRHLAEQGPDWNGVLAEMLN  287 (705)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999568999999999999858899999999999


No 169
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.19  E-value=0.0051  Score=43.24  Aligned_cols=90  Identities=18%  Similarity=0.167  Sum_probs=60.2

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC------------CCCC
Q ss_conf             8418996234433346889999999986148950782054221004779999851034742223------------3210
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV------------IPEQ  166 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~------------~~~~  166 (461)
                      +-++++++|+.|+||||.+...+..-.+ +|.++++++.+--    .+||...|+.+|+|+-..            +.+.
T Consensus       265 ~GsstLi~Gp~GtGKTtla~qFl~~~a~-~GE~~l~~~FeE~----~~~l~~~a~~~G~dl~~~~~~G~l~i~~~~p~~~  339 (501)
T PRK09302        265 RGSIILVSGATGTGKTLLVSKFAEAACR-RGERCLLFAFEES----RAQLVRNATSWGIDLEEMERKGLLKIICARPEST  339 (501)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECC----HHHHHHHHHHCCCCHHHHHHCCCEEEEEECCCCC
T ss_conf             8946999889998889999999999986-5990899999679----9999999997399848887489479998370005


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             368999999999974158869983344
Q gi|254780711|r  167 SPEKIAIRATQSARDGGYDAVILDTAG  193 (461)
Q Consensus       167 dp~~i~~~a~~~a~~~~~D~iiiDTaG  193 (461)
                      .|.+.+..-.+.-...+.+.|+||.--
T Consensus       340 ~~~e~~~~i~~~v~~~~~~rVvIDsls  366 (501)
T PRK09302        340 GLEDHLQIIKREIEEFKPSRVAVDPLS  366 (501)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf             989999999999997299899995806


No 170
>PRK08233 hypothetical protein; Provisional
Probab=97.18  E-value=0.0036  Score=44.43  Aligned_cols=84  Identities=21%  Similarity=0.251  Sum_probs=51.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             8841899623443334688999999998614895078205422-100477999985103474222332103689999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH-RPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~-R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      ++|.||-++|..||||||-+-+|+..+.   +..  +..-|.| +.-+-+++..|-+. +..+    ..-|-... .+.+
T Consensus         1 kkp~IIgIaGgSgSGKTtla~~l~~~l~---~~~--~~~~D~y~~~~~~~~~~~~~~~-~~~~----d~~d~~~l-~~~l   69 (182)
T PRK08233          1 KKTKIITIAAVSGGGKTTLTERLTHKLK---NSK--ALYFDRYDFDNCPEDICKWIDD-GANY----SEWVLTPL-IKDI   69 (182)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCC---CCE--EEEECCCCCCCCHHHHHHHHCC-CCCC----CHHHHHHH-HHHH
T ss_conf             9988999968886789999999999746---775--8996665554687889987406-7786----66669999-9999


Q ss_pred             HHHHH-CCCCEEEEECC
Q ss_conf             99974-15886998334
Q gi|254780711|r  177 QSARD-GGYDAVILDTA  192 (461)
Q Consensus       177 ~~a~~-~~~D~iiiDTa  192 (461)
                      ...+. +.+|+||+|..
T Consensus        70 ~~l~~~~~~d~iIvEgi   86 (182)
T PRK08233         70 QELIAKSNVDYIIVDYP   86 (182)
T ss_pred             HHHHCCCCCCEEEEEEE
T ss_conf             99855998728999644


No 171
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.18  E-value=0.033  Score=37.02  Aligned_cols=200  Identities=18%  Similarity=0.187  Sum_probs=104.2

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      -..|..+||.|+.|+|||..+.-+|..+..    .  +++.+..     +=+-.|         ....    .+-++...
T Consensus       273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~----~--fi~v~~~-----~l~sk~---------vGes----ek~ir~~F  328 (494)
T COG0464         273 LRPPKGVLLYGPPGTGKTLLAKAVALESRS----R--FISVKGS-----ELLSKW---------VGES----EKNIRELF  328 (494)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCC----C--EEEECCH-----HHHHHH---------HHHH----HHHHHHHH
T ss_conf             988836999889997589999998754498----2--4884335-----554077---------6599----99999999


Q ss_pred             HHHHHCCCCEEEEEC-----CCCCCCH----HHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             999741588699833-----4422211----2468999999851385110003101112256888898876358440776
Q gi|254780711|r  177 QSARDGGYDAVILDT-----AGRNHIN----DSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIIL  247 (461)
Q Consensus       177 ~~a~~~~~D~iiiDT-----aGR~~~d----~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIl  247 (461)
                      ..|+...--+|++|-     ++|....    ...+.++-....-+.+.+-++|+-|+..-+.++.  +|.-.--++.+|.
T Consensus       329 ~~A~~~~p~iifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ld~--a~lR~gRfd~~i~  406 (494)
T COG0464         329 EKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDP--ALLRPGRFDRLIY  406 (494)
T ss_pred             HHHHHCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCH--HHHCCCCCEEEEE
T ss_conf             99996699889748866674128998763799999999999747544376489964798332687--5624366303787


Q ss_pred             EECCC-CCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             41157-663303677788847873026158672321001368899877358--627889998742112678998886531
Q gi|254780711|r  248 TRMDG-DGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM--GDVVSLVEKAARNLNEKQAALTAKKIA  324 (461)
Q Consensus       248 TKlD~-~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm--gD~~~l~e~~~~~~d~~~~~~l~~k~~  324 (461)
                      -.+.. .+|--..-......+.|           -.+.++-+.++...-|+  -|+..++..|......+        ..
T Consensus       407 v~~pd~~~r~~i~~~~~~~~~~~-----------~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~--------~~  467 (494)
T COG0464         407 VPLPDLEERLEIFKIHLRDKKPP-----------LAEDVDLEELAEITEGYSGADIAALVREAALEALRE--------AR  467 (494)
T ss_pred             ECCCCHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--------CC
T ss_conf             17989899999999985415651-----------155641999998752778999999999999989985--------45


Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             04637999999999985
Q gi|254780711|r  325 KGKFDLEDLAEQFRQTQ  341 (461)
Q Consensus       325 ~g~F~l~Df~~Ql~~i~  341 (461)
                      .-.++.+||.+.++.++
T Consensus       468 ~~~~~~~~~~~a~~~~~  484 (494)
T COG0464         468 RREVTLDDFLDALKKIK  484 (494)
T ss_pred             CCCCCHHHHHHHHHHCC
T ss_conf             77634999999986247


No 172
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.17  E-value=0.0025  Score=45.66  Aligned_cols=95  Identities=20%  Similarity=0.241  Sum_probs=65.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             996234433346889999999986148950782054221004779999851034-7422233210368999999999974
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ-VDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~-v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      ..++-|+|+||||+-.=.+.|+..++++...++.+-+-=.-+.+-|+.+++..+ ..+...+.+.-|..--+.+++...+
T Consensus       100 FaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~  179 (1187)
T COG1110         100 FAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIES  179 (1187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             48982788765479999999987558749999667899999999999988653785246653123665779999999865


Q ss_pred             CCCCEEEEECCCCCCCH
Q ss_conf             15886998334422211
Q gi|254780711|r  182 GGYDAVILDTAGRNHIN  198 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d  198 (461)
                      .++|+ +|-|+.-++.+
T Consensus       180 gdfdI-litTs~FL~k~  195 (1187)
T COG1110         180 GDFDI-LITTSQFLSKR  195 (1187)
T ss_pred             CCCCE-EEEEHHHHHHH
T ss_conf             99639-99747878866


No 173
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16  E-value=0.034  Score=36.91  Aligned_cols=215  Identities=18%  Similarity=0.207  Sum_probs=93.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC----CCCHHHHHHH
Q ss_conf             884189962344333468899999999861489507820542210047799998510347422233----2103689999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI----PEQSPEKIAI  173 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~----~~~dp~~i~~  173 (461)
                      .-.+.++|.|+.|+||||++-=||+.+--..+.  .--.|+.     -+--+...+-.-++++...    .+-|-+.-..
T Consensus        36 rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~--~~~pCg~-----C~~C~~i~~g~~~D~~EiDaAs~~~vdd~R~l~  108 (704)
T PRK08691         36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ--HGEPCGV-----CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVL  108 (704)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             975237502789878889999999996799999--9997877-----776787855899874774245445889999999


Q ss_pred             HHHHHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH----------
Q ss_conf             999999-7415886998334422211246899999985138511000310111225-----688889887----------
Q gi|254780711|r  174 RATQSA-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD----------  237 (461)
Q Consensus       174 ~a~~~a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~----------  237 (461)
                      +-+.|+ ....|-|.|||-+-.+....  +.-|-+..+.- |.++.|++ |||--+     .+..+..|+          
T Consensus       109 ~~~~y~P~~~~yKVyiiDEvhmLs~~a--fNAlLKtLEEP-P~~v~Fil-aTTdp~Klp~TIlSRC~~f~l~~~~~~~i~  184 (704)
T PRK08691        109 ENAQYAPTAGKYKVYIIDEVHMLSKSA--FNAMLKTLEEP-PEHVKFIL-ATTDPHKVPVTVLSRCLQFVLRNMTAQQVA  184 (704)
T ss_pred             HHCCCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf             853468867853599983154438999--99999861479-75608998-548846475899988877102689999999


Q ss_pred             ---------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf             ---------6358440----776411576633036777888478730261586723210013688998773586278899
Q gi|254780711|r  238 ---------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLV  304 (461)
Q Consensus       238 ---------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~  304 (461)
                               +.+.++-    +|.-+-||+-|  -|||+...   -|.| |.|.--        +.-+..+||.=|-.-++
T Consensus       185 ~~L~~i~~~E~i~~e~~al~~ia~~a~Gs~R--DalslldQ---aia~-~~g~~~--------~~~v~~mLG~~d~~~~~  250 (704)
T PRK08691        185 DHLAHVLDSEKIAYEPPALQLLGRAAAGSMR--DALSLLDQ---AIAL-GSGKVA--------ENDVRQMIGAVDKQYLY  250 (704)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHH-CCCCCC--------HHHHHHHHCCCCHHHHH
T ss_conf             9999999983985689999999997578577--79889999---9996-489626--------99999985888778999


Q ss_pred             HHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             98742112678--9988865310463799999999
Q gi|254780711|r  305 EKAARNLNEKQ--AALTAKKIAKGKFDLEDLAEQF  337 (461)
Q Consensus       305 e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~Ql  337 (461)
                      +-.....+.+.  .-...+.+..-.-+|+.++..+
T Consensus       251 ~ll~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l  285 (704)
T PRK08691        251 ELLTGIINQDGAALTAKAQEMAACAVGFDNALGEL  285 (704)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99999995589999999999998689999999999


No 174
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes.  It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes.  TrmE contains a GTPase domain that forms a canonical Ras-like fold.  It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue.  In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.15  E-value=0.0036  Score=44.42  Aligned_cols=141  Identities=23%  Similarity=0.333  Sum_probs=73.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      .|.++|..-+||||-.-+|.       |.++.+|+- +  |+             ..       .|+...      ...-
T Consensus         3 ~ValvG~pN~GKStL~N~l~-------g~~~~ivs~-~--pg-------------tT-------rd~~~~------~~~~   46 (157)
T cd04164           3 KVVIVGKPNVGKSSLLNALA-------GRDRAIVSD-I--AG-------------TT-------RDVIEE------SIDI   46 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHH-------CCCCEEECC-C--CC-------------EE-------EECCEE------EEEE
T ss_conf             99998899998999999996-------897334328-8--98-------------47-------863267------8953


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHH--H-HHHHHCCCCCCCCCCCHHCCHHHHHHH-HHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             158869983344222112468999--9-998513851100031011122568888-988763584407764115766330
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEI--S-EIKSLTNPHEILLVADALTGQDAVHLA-RNFDKIVDLTGIILTRMDGDGRGG  257 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El--~-~i~~~~~p~e~~lV~da~~Gq~a~~~a-~~F~~~~~i~giIlTKlD~~akgG  257 (461)
                      .++.+.++||+|=... .+.++..  + .....-+.|-+++|+|+..+....+.. .......+ -=++++|.|--..--
T Consensus        47 ~~~~i~l~DTpG~~~~-~~~~e~~~~~~~~~~i~~aDlil~vvD~~~~~~~~~~~~~~~~~~~p-~i~v~NKiDl~~~~~  124 (157)
T cd04164          47 GGIPVRLIDTAGIRET-EDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKP-IIVVLNKSDLLPDSE  124 (157)
T ss_pred             CCEEEEEEECCCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCC-EEEEEECCCCCCCHH
T ss_conf             9988999726775444-57899999999986301576799998898778888999998514799-899996760148666


Q ss_pred             HHHHHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf             36777888478730261--586723210
Q gi|254780711|r  258 AALSMRTVTGKPIKAIG--TGEKINDLE  283 (461)
Q Consensus       258 ~als~~~~~~~PI~fig--~GE~~~dle  283 (461)
                         -.....+.|+.+|+  +|+.+++|.
T Consensus       125 ---~~~~~~~~~vi~ISA~~g~Gi~~L~  149 (157)
T cd04164         125 ---LLSLLAGKPIIAISAKTGEGLDELK  149 (157)
T ss_pred             ---HHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf             ---7985289977999852795999999


No 175
>PRK05748 replicative DNA helicase; Provisional
Probab=97.15  E-value=0.035  Score=36.85  Aligned_cols=114  Identities=23%  Similarity=0.212  Sum_probs=66.0

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC----HHHHHHH
Q ss_conf             4189962344333468899999999861489507820542210047799--998510347422233210----3689999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ----SPEKIAI  173 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~----dp~~i~~  173 (461)
                      -..|.+.|-.|.|||+.+--+|.....+.+++|++.+..--    .+||  +.+|...+||......+.    +-..+ .
T Consensus       203 g~LiviaaRP~mGKTa~alnia~~~a~~~~~~v~~fSlEM~----~~~l~~R~la~~s~v~~~~i~~g~l~~~~~~~~-~  277 (448)
T PRK05748        203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG----AESLVMRMLCAEGRIDQQKLRTGQLTDEDWPKL-T  277 (448)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHH-H
T ss_conf             73799984799876899999999999856980899817788----889999999997467777776289999999999-9


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             99999974158869983344222112468999999851385110003101
Q gi|254780711|r  174 RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       174 ~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                      .+++...  +..+.|-||++- ..+ ++....+++.+.- +.--++|+|-
T Consensus       278 ~a~~~l~--~~~l~i~d~~~~-ti~-~i~~~~r~~~~~~-~~~~~vviDY  322 (448)
T PRK05748        278 IAVGSLS--DAPIYIDDTPGI-KVT-EIRARCRRLAQEH-GGLGLIVIDY  322 (448)
T ss_pred             HHHHHHH--CCCEEEECCCCC-CHH-HHHHHHHHHHHHC-CCCCEEEEEH
T ss_conf             9999986--598378558988-689-9999999999975-9988999716


No 176
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.13  E-value=0.036  Score=36.73  Aligned_cols=210  Identities=20%  Similarity=0.241  Sum_probs=115.0

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             99998718774210002588418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r   80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT  159 (461)
Q Consensus        80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~  159 (461)
                      +|++..|.....--.+.-+-|.=|||+|+.|+|||.-    |+-....-+  |-+.++                 .+-+|
T Consensus       165 ~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlL----AkAvAgEa~--vpF~~~-----------------sgsef  221 (644)
T PRK10733        165 AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLL----AKAIAGEAK--VPFFTI-----------------SGSDF  221 (644)
T ss_pred             HHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHH----HHHHHCCCC--CEEEEE-----------------EHHHH
T ss_conf             9999981297999974997998517779899877899----999864559--808997-----------------84773


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC---CCCCCC-------H--HHHHHHHHHHHHHCCCCCCCCCCCHHCCH
Q ss_conf             22332103689999999999741588699833---442221-------1--24689999998513851100031011122
Q gi|254780711|r  160 LEVIPEQSPEKIAIRATQSARDGGYDAVILDT---AGRNHI-------N--DSLMQEISEIKSLTNPHEILLVADALTGQ  227 (461)
Q Consensus       160 ~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDT---aGR~~~-------d--~~lm~El~~i~~~~~p~e~~lV~da~~Gq  227 (461)
                      .....|..+.. +++-.+.|++..--+|+||-   -||...       |  +..+.+|-.=.+-..+.+-++|+-||.--
T Consensus       222 ~e~~vGvga~r-VR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaATNrp  300 (644)
T PRK10733        222 VEMFVGVGASR-VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP  300 (644)
T ss_pred             HHEEEECCHHH-HHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf             02225306899-99999999966997999953220366678988898328887899999995488887876999626997


Q ss_pred             HHHHHHH----HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC--CCHH
Q ss_conf             5688889----887635844077641157663303677788847873026158672321001368899877358--6278
Q gi|254780711|r  228 DAVHLAR----NFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM--GDVV  301 (461)
Q Consensus       228 ~a~~~a~----~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm--gD~~  301 (461)
                      +.++-|-    .|...     |.+..-|-.  |=..+=-+|.-++|+.           ...+.+.+|.+--|+  -|+.
T Consensus       301 d~LD~ALlRPGRFDr~-----I~V~lPd~~--~R~~ILkvh~~~~~l~-----------~dvdl~~lA~~T~GfSGADLa  362 (644)
T PRK10733        301 DVLDPALLRPGRFDRQ-----VVVGLPDVR--GREQILKVHMRRVPLA-----------PDIDAAIIARGTPGFSGADLA  362 (644)
T ss_pred             CCCCHHHHCCCCCCEE-----EEECCCCHH--HHHHHHHHHHCCCCCC-----------CCCCHHHHHCCCCCCCHHHHC
T ss_conf             5547777168886559-----997798988--9999999996488777-----------311589884459986703332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             899987421126789988865310463799999999998
Q gi|254780711|r  302 SLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQT  340 (461)
Q Consensus       302 ~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i  340 (461)
                      .|+..|         ..++-|-.+...+..||.+.+..+
T Consensus       363 NlvNEA---------Al~AaR~~k~~It~~d~e~A~drV  392 (644)
T PRK10733        363 NLVNEA---------ALFAARGNKRVVSMVEFEKAKDKI  392 (644)
T ss_pred             CHHHHH---------HHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             599999---------999987087543076689988885


No 177
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.13  E-value=0.0057  Score=42.87  Aligned_cols=92  Identities=21%  Similarity=0.206  Sum_probs=63.0

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             02588418996234433346889999999986148950782054221004779999851034742223321036899999
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR  174 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~  174 (461)
                      +...+. -|+|+|+.|+|||--+.-+|+.+.. .|++|..+++..    -+++|+.- ..       .  ++ -.    +
T Consensus        43 ~i~~~~-Nlll~G~~GtGKThLA~Ai~~~~~~-~g~~v~f~~~~~----L~~~l~~~-~~-------~--~~-~~----~  101 (178)
T pfam01695        43 WIEQAE-NLLLLGPPGVGKTHLACALGHQACR-AGYSVLFTRTPD----LVEQLKRA-RG-------D--GR-LA----R  101 (178)
T ss_pred             CHHCCC-CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECHH----HHHHHHHH-HH-------C--CC-HH----H
T ss_conf             421587-6899899998789999999999998-698599996167----99999987-52-------6--74-99----9


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             99999741588699833442221124689999998
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIK  209 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~  209 (461)
                      .+.  +-..+|++|||.-|..+.+++-.+.|-++.
T Consensus       102 ~l~--~~~~~dlLIiDDlG~~~~s~~~~~~lf~li  134 (178)
T pfam01695       102 TLQ--RLAKADLLILDDIGYLPLSQEAAHLLFELI  134 (178)
T ss_pred             HHH--HHHCCCEEEEEHHCCCCCCHHHHHHHHHHH
T ss_conf             999--962589788720016568989999999999


No 178
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.12  E-value=0.012  Score=40.36  Aligned_cols=98  Identities=15%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf             189962344333468899999999861489507820542210047799998510347422233-2103689999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-PEQSPEKIAIRATQSA  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-~~~dp~~i~~~a~~~a  179 (461)
                      .++.+.|+.+|||||.+..+.+..++.++ .|+++  |+-.+--    ..|++.+||+.=... ...|..+-+.+.++..
T Consensus        53 Ri~ei~G~essGKTtlal~~ia~aQk~gg-~~~~i--D~E~a~d----~~~a~~lGVD~~~l~~~qpd~~Eqal~i~~~l  125 (322)
T pfam00154        53 RIIEIYGPESSGKTTLALHAIAEAQKAGG-TAAFI--DAEHALD----PVYAKKLGVDIDNLLVSQPDTGEQALEIADML  125 (322)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEE--EHHHHCC----HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHH
T ss_conf             08999889877789999999999973499-38998--5366059----88999809880253897788399999999998


Q ss_pred             HH-CCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             74-158869983344222112468999
Q gi|254780711|r  180 RD-GGYDAVILDTAGRNHINDSLMQEI  205 (461)
Q Consensus       180 ~~-~~~D~iiiDTaGR~~~d~~lm~El  205 (461)
                      .. ...|+|++|..|-+....++-.++
T Consensus       126 i~~~~~~liViDSvaal~p~~E~e~~~  152 (322)
T pfam00154       126 VRSGAVDLIVVDSVAALVPKAEIEGEM  152 (322)
T ss_pred             HCCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             537997659982534567688875243


No 179
>PRK07263 consensus
Probab=97.11  E-value=0.039  Score=36.54  Aligned_cols=117  Identities=24%  Similarity=0.233  Sum_probs=69.5

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             4189962344333468899999999861489507820542210047799--99851034742223321036899999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQSPEKIAIRATQ  177 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~dp~~i~~~a~~  177 (461)
                      -..|.+.|-.|.|||+.+--+|.....+.+++|++.+..--    -+||  +.+|...+|+......+.-... -+..+.
T Consensus       203 GdLiviaaRPsmGKTa~alnia~~iA~~~~~~V~~fSlEMs----~~ql~~R~la~~~~i~~~~i~~g~l~~~-e~~~~~  277 (453)
T PRK07263        203 DQLIILAARPAVGKTAFVLNIAQNVGTKQKKTVAIFSLEMG----AESLVDRMLAAEGMVDSHSLRTGQLTDQ-DWNNVT  277 (453)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHCCCCHHCCCCCCCCHH-HHHHHH
T ss_conf             86899972788847899999999999855982899924699----8999999999861733103313652479-999999


Q ss_pred             HHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             997--4158869983344222112468999999851385110003101
Q gi|254780711|r  178 SAR--DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       178 ~a~--~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                      .+.  ..+..+.|-||++-. .. ++....+++.+.....--++|+|-
T Consensus       278 ~a~~~l~~~~l~idd~~~~~-i~-~i~~~~r~~~~~~~~~l~livIDY  323 (453)
T PRK07263        278 IAQGALAEAPIYIDDTPGIK-IT-EIRARSRKLSQEVDGGLGLIVIDY  323 (453)
T ss_pred             HHHHHHCCCCEEEECCCCCC-HH-HHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf             99987406858997899999-89-999999999986058986899736


No 180
>PRK05480 uridine kinase; Provisional
Probab=97.11  E-value=0.00083  Score=49.25  Aligned_cols=41  Identities=34%  Similarity=0.432  Sum_probs=35.6

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             58841899623443334688999999998614895078205422
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      .++|.+|.++|..||||||.+-+|+..|..   .+|.++++|-|
T Consensus         3 ~k~P~iIgIaG~SgSGKTT~a~~L~~~l~~---~~v~vi~~D~Y   43 (209)
T PRK05480          3 MKQPIIIGIAGGSGSGKTTVASTIYEELGD---ESIAVISQDSY   43 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHCCC---CCEEEEECCCC
T ss_conf             889889999899977899999999998086---87599955441


No 181
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09  E-value=0.0018  Score=46.64  Aligned_cols=216  Identities=15%  Similarity=0.161  Sum_probs=110.0

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf             5884189962344333468899999999861489507820542210047799998510347422233210-368999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA  175 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a  175 (461)
                      ..-|+.+||+|+.|+||||++-=+|+.+--. +.....-.|..-+.         +..-.++++.....+ .-++-+++-
T Consensus        37 gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~-~~~d~~~pC~~C~~---------~~~~s~DViEIDAASn~gVDdIReL  106 (718)
T PRK07133         37 GKISHAYLFSGPHGTGKTSVAKIFANALNCS-HKTDLIEPCQNCIE---------NFNNNLDIIEMDAASNNGVDEIREL  106 (718)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHH---------CCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf             9975058623899868899999999996799-99999997702143---------0478987377545566888999999


Q ss_pred             ---HHHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH---------
Q ss_conf             ---9999-7415886998334422211246899999985138511000310111225-----688889887---------
Q gi|254780711|r  176 ---TQSA-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD---------  237 (461)
Q Consensus       176 ---~~~a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~---------  237 (461)
                         +.+. ....|-|.|||-+-++....  ..-|-+..+. .|.+++|++ |+|--+     .+..++.|+         
T Consensus       107 ie~v~y~P~~gkYKVyIIDEvHMLS~~A--fNALLKtLEE-PP~hvvFIL-aTTep~KIP~TIlSRCQrFdFkrI~~~~I  182 (718)
T PRK07133        107 RENVKNLPQISKYKIYIIDEVHMLSKSA--FNALLKTLEE-PPKHVIFIL-ATTDVQKIPLTILSRVQRFNFRRISEDVI  182 (718)
T ss_pred             HHHHCCCCCCCCEEEEEEECCCCCCHHH--HHHHHHHHCC-CCCCCEEEE-EECCHHHCCHHHHHCCEEEECCCCCHHHH
T ss_conf             9982558877872499996620079999--9999985027-987827999-70882548487741220335888999999


Q ss_pred             ----------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf             ----------635844----077641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r  238 ----------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL  303 (461)
Q Consensus       238 ----------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l  303 (461)
                                +.+.++    .+|..+-||+-|  -|||+...    +...|.|.=-        ..=+..+||.-+...+
T Consensus       183 ~~~L~~I~~kE~I~~e~eAL~lIA~~a~GSmR--DAlSlLDQ----v~~f~ng~it--------~k~v~~~~Gl~~~~~~  248 (718)
T PRK07133        183 VHQLENILEKEKIKYEKNALKLIASLASGSLR--DALSIADQ----VSIFGNGNIT--------LKNVNELFGLVSNEIV  248 (718)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH----HHHHCCCCCC--------HHHHHHHHCCCCHHHH
T ss_conf             99999999985997789999999997688488--89879999----9985489872--------9999999676557999


Q ss_pred             HHHHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             998742112--6789988865310463799999999998
Q gi|254780711|r  304 VEKAARNLN--EKQAALTAKKIAKGKFDLEDLAEQFRQT  340 (461)
Q Consensus       304 ~e~~~~~~d--~~~~~~l~~k~~~g~F~l~Df~~Ql~~i  340 (461)
                      ++-......  .++.-.....+..+-.+.+-|...+-.+
T Consensus       249 i~~~n~~~~~~~~~~l~~l~~~~~~gid~~~l~~~li~~  287 (718)
T PRK07133        249 INFLNLLYSKNIKEVLEKLNQLKFQGIDPELLVISLINL  287 (718)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             999999986169999999999997588999999999999


No 182
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.09  E-value=0.00076  Score=49.53  Aligned_cols=47  Identities=23%  Similarity=0.309  Sum_probs=40.9

Q ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf             258841899623443334688999999998614895078205422100
Q gi|254780711|r   96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA  143 (461)
Q Consensus        96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a  143 (461)
                      ...+|.||-|+|+.||||||-+-+|...+.+ .+.++.++-.|.+|.+
T Consensus        20 ~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~-~~~~~~~LDGD~lR~~   66 (198)
T PRK03846         20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVHTYLLDGDNVRHG   66 (198)
T ss_pred             HCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECHHHHHHH
T ss_conf             6899869998799999889999999999997-5997599777999874


No 183
>cd01393 recA_like RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57.  Archaea have the RecA-like homologs radA and radB.
Probab=97.08  E-value=0.0094  Score=41.22  Aligned_cols=109  Identities=19%  Similarity=0.165  Sum_probs=63.1

Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEECC-CCCCCHHHHHHHHHH-H
Q ss_conf             999871877421000258841899623443334688999999998614-----895078205-422100477999985-1
Q gi|254780711|r   81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLK-----KKKILMASL-DVHRPAAQEQLRYLG-E  153 (461)
Q Consensus        81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~-----~~kV~lv~~-Dt~R~aA~eQL~~~a-~  153 (461)
                      +|-.+|++.-   .  .  -.+.-++|..|+|||+.|..+|...++.+     +.+|+.+.+ ++|.+-=++|+-.-. .
T Consensus         7 ~lD~~LgGGi---p--~--G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~~~~~~   79 (226)
T cd01393           7 ALDELLGGGI---P--T--GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL   79 (226)
T ss_pred             HHHHHHCCCC---C--C--CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             8998857998---8--8--8399999999998999999999998542211699961999955775319999999876032


Q ss_pred             -----CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             -----0347422233210368999999999974158869983344222
Q gi|254780711|r  154 -----QIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNH  196 (461)
Q Consensus       154 -----~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~  196 (461)
                           .-++-++......+..+++..........+.++|+||...-+.
T Consensus        80 ~~~~~l~~i~~~~~~~~e~~~~~~~~l~~~~~~~~v~liViDSi~al~  127 (226)
T cd01393          80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALF  127 (226)
T ss_pred             CHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEC
T ss_conf             667764333684379999999999999987524784289993220011


No 184
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  Pentoses include xylose, arabinose, and ribose.  Important hexoses include glucose, galactose, and fructose.  In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.07  E-value=0.0036  Score=44.36  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=59.2

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             02588418996234433346889999999986148950782054221004779999851034742223321036899999
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR  174 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~  174 (461)
                      +.-.+-.++.++|+|||||||++-=|+-.+.-..| .|.+-..|.......+     +.+.++.++..-++..--.+   
T Consensus        21 l~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G-~i~i~G~~i~~~~~~~-----~~~~gi~~v~qLSgG~~Qrv---   91 (163)
T cd03216          21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG-EILVDGKEVSFASPRD-----ARRAGIAMVYQLSVGERQMV---   91 (163)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHH-----HHHCCCCEECCCCHHHHHHH---
T ss_conf             89879989999988998999999999577689857-8999999999999999-----99879948946998999999---


Q ss_pred             HHHHHHHCCCCEEEEE--CCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             9999974158869983--3442221124689999998513
Q gi|254780711|r  175 ATQSARDGGYDAVILD--TAGRNHINDSLMQEISEIKSLT  212 (461)
Q Consensus       175 a~~~a~~~~~D~iiiD--TaGR~~~d~~lm~El~~i~~~~  212 (461)
                      ++..|-..+-+++|.|  |+|   .|....+++.++.+..
T Consensus        92 ~iaral~~~p~llilDEPt~g---LD~~~~~~i~~~l~~l  128 (163)
T cd03216          92 EIARALARNARLLILDEPTAA---LTPAEVERLFKVIRRL  128 (163)
T ss_pred             HHHHHHHHCCCEEEEECCCCC---CCHHHHHHHHHHHHHH
T ss_conf             999999729999999097557---9999999999999999


No 185
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=97.07  E-value=0.0052  Score=43.17  Aligned_cols=177  Identities=16%  Similarity=0.199  Sum_probs=90.7

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH--------H
Q ss_conf             88418996234433346889999999986148950782054221004779999851034742223321036--------8
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSP--------E  169 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp--------~  169 (461)
                      ..+.||.||||.+.|||+.+-||++||.- .|.++-+-.+..||=...      +...+.+||... ..+.        .
T Consensus        11 ~~klvIvmVGLPARGKS~ia~kl~RYL~W-~g~~~kvFn~G~yRR~~~------~~~~~~~ffdp~-n~~~~~~R~~~a~   82 (223)
T pfam01591        11 NSKTMIVMVGLPARGKTYISKKLTRYLNW-LGVPTKVFNVGEYRRSAV------KAYSNYEFFRPD-NTEAMKIREQCAL   82 (223)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECHHHHHHHC------CCCCCCCCCCCC-CHHHHHHHHHHHH
T ss_conf             89889999899999889999999999865-699805842637887631------899994113899-9899999999999


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCC--------------------HHCCHH
Q ss_conf             99999999997415886998334422-211246899999985138511000310--------------------111225
Q gi|254780711|r  170 KIAIRATQSARDGGYDAVILDTAGRN-HINDSLMQEISEIKSLTNPHEILLVAD--------------------ALTGQD  228 (461)
Q Consensus       170 ~i~~~a~~~a~~~~~D~iiiDTaGR~-~~d~~lm~El~~i~~~~~p~e~~lV~d--------------------a~~Gq~  228 (461)
                      ..+.+.+.++.+++.+|-|.|-.--. ..-..++++.++.     +..++||=.                    --.|.+
T Consensus        83 ~~l~dl~~~l~~~~G~VaI~DATN~T~~RR~~i~~~~~~~-----~~~vlFiEsic~D~~ii~~NI~~~~~~spDY~~~~  157 (223)
T pfam01591        83 AALKDVLAYLNEESGQVAIFDATNTTRERRKNILDFAEEN-----GLKVFFLESICDDPEIIARNIKLVKFSSPDYKGKP  157 (223)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHC-----CCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9999999999858982999968876899999999999866-----97499999973888999999999984599746889


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC--CCCCCCCHHHHHHHHHC
Q ss_conf             688889887635844077641157663303677788847873026158672--32100136889987735
Q gi|254780711|r  229 AVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI--NDLENFFPDRIANRILG  296 (461)
Q Consensus       229 a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~--~dle~F~p~~~~~riLG  296 (461)
                      .-.-.+.|.+.+..---+-.-+|..---  -|       .=|+.|-.||++  .-++-|-|.|++.-|+-
T Consensus       158 ~e~A~~DF~~Ri~~ye~~Yepl~~~~d~--~l-------syIK~in~g~~~~vn~i~GyL~srIv~~LmN  218 (223)
T pfam01591       158 PEEAIDDFMKRLECYEKQYEPLDDEHDE--DL-------SYIKVINVGQSIVVNNVQGYLQSRIVYYLMN  218 (223)
T ss_pred             HHHHHHHHHHHHHHHHCCEECCCCCCCC--CC-------CEEEEEECCCEEEEECCCCCCHHHHHHHHHC
T ss_conf             9999999999999753424238834336--87-------5699997898899978547618889998140


No 186
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.05  E-value=0.0098  Score=41.10  Aligned_cols=100  Identities=29%  Similarity=0.376  Sum_probs=72.8

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             99998718774210002588418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r   80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT  159 (461)
Q Consensus        80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~  159 (461)
                      .||-++||+.-.     +  -.+||+-|-.|.||+|-.-.+|..+.+ .+.+|+-|+.--    ..+|++.=|+++++.-
T Consensus        69 ~ElDRVLGGGiV-----p--GSvvLlgGePGIGKSTLLLQia~~la~-~~~~vLYvSGEE----S~~QIk~RA~RLg~~~  136 (372)
T cd01121          69 EELDRVLGGGLV-----P--GSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEE----SPEQIKLRADRLGIST  136 (372)
T ss_pred             HHHHHHHCCCCC-----C--CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECHH----HHHHHHHHHHHHCCCC
T ss_conf             666540057730-----6--717998259988688999999999986-399389982456----7899998999858788


Q ss_pred             --CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             --223321036899999999997415886998334422
Q gi|254780711|r  160 --LEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN  195 (461)
Q Consensus       160 --~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~  195 (461)
                        +....+.|.-.|    ++.....+.|+++||.-=-.
T Consensus       137 ~~l~l~set~le~I----l~~i~~~kP~~lIIDSIQT~  170 (372)
T cd01121         137 ENLYLLAETNLEDI----LASIEELKPDLVIIDSIQTV  170 (372)
T ss_pred             CCCEEEECCCHHHH----HHHHHHHCCCEEEEECHHHC
T ss_conf             77278843569999----99999719988999562202


No 187
>PRK13695 putative NTPase; Provisional
Probab=97.05  E-value=0.004  Score=44.08  Aligned_cols=114  Identities=25%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEEC----------------CCCCCCHHHHHHHHHHH--CCCCCCC
Q ss_conf             418996234433346889999999986148950-7820----------------54221004779999851--0347422
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKI-LMAS----------------LDVHRPAAQEQLRYLGE--QIQVDTL  160 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV-~lv~----------------~Dt~R~aA~eQL~~~a~--~~~v~~~  160 (461)
                      +-.|.+.|..|+||||-+-|++..++.. +.+| ++.+                .|+-+-+-   |.....  ...|.=|
T Consensus         3 ~~kI~iTG~PGvGKTTli~Kv~~~L~~~-g~~v~GF~T~Evre~G~R~GF~vv~l~~g~~~~---lA~~~~~~~~~VgkY   78 (174)
T PRK13695          3 ALRIGITGMPGVGKTTLVLKIAELLARE-GYKVGGFITEEVREGGKRIGFKIIDLDTGEEGI---LARVGAVSRPRVGKY   78 (174)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEEEEEECCCEEEEEEEEECCCCCEEE---EEECCCCCCCCCCCE
T ss_conf             4299987899988999999999998636-961746995256038828505999905885687---675378898554566


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCC
Q ss_conf             2332103689999999999741588699833442221124689999998513851-100031
Q gi|254780711|r  161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVA  221 (461)
Q Consensus       161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~  221 (461)
                      .. .-.+--.++-.++..+. ..+|+++||--|.+......+.+  .+.++.+.+ -++.|+
T Consensus        79 ~V-~~~~~e~~~~~~l~~a~-~~~dlivIDEIG~MEl~s~~F~~--~V~~~L~s~kpvl~ti  136 (174)
T PRK13695         79 VV-NLEDLERIAIPAISRAL-READLIIIDEIGPMELKSKKFVS--AVEEVLKSEKPVIATV  136 (174)
T ss_pred             EE-EHHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHHH--HHHHHHCCCCCEEEEE
T ss_conf             87-16897899899998353-57879999631033110499999--9999973899899997


No 188
>cd00983 recA RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.05  E-value=0.011  Score=40.60  Aligned_cols=94  Identities=19%  Similarity=0.273  Sum_probs=61.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742223-32103689999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV-IPEQSPEKIAIRATQSA  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~-~~~~dp~~i~~~a~~~a  179 (461)
                      .++-+.|+.+|||||.+..+++..++.++ .|+.+  |+-.  |++  ..|++.+||+.=.. ....|-.+-+.+.++..
T Consensus        56 Rivei~G~essGKTtlal~~ia~aQk~gg-~~~~i--DaE~--a~d--~~~a~~lGVD~~~l~~~qp~~~Eq~l~i~~~l  128 (325)
T cd00983          56 RIIEIYGPESSGKTTLALHAIAEAQKLGG-TVAFI--DAEH--ALD--PVYAKKLGVDLDNLLISQPDTGEQALEIADSL  128 (325)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEE--EHHH--CCC--HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHH
T ss_conf             08999889877799999999999873598-39999--6254--259--89999809984675896663899999999997


Q ss_pred             H-HCCCCEEEEECCCCCCCHHHH
Q ss_conf             7-415886998334422211246
Q gi|254780711|r  180 R-DGGYDAVILDTAGRNHINDSL  201 (461)
Q Consensus       180 ~-~~~~D~iiiDTaGR~~~d~~l  201 (461)
                      . ....|+|++|.-+-+....++
T Consensus       129 i~s~~~dliViDSvaal~p~~E~  151 (325)
T cd00983         129 VRSGAVDLIVVDSVAALVPKAEI  151 (325)
T ss_pred             HCCCCCCEEEECCCCCCCCHHHH
T ss_conf             51588767998151123657887


No 189
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.05  E-value=0.0027  Score=45.35  Aligned_cols=143  Identities=22%  Similarity=0.303  Sum_probs=101.8

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC----HHHH
Q ss_conf             025884189962344333468899999999861489507820542210047799998510347422233210----3689
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ----SPEK  170 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~----dp~~  170 (461)
                      +...+..++=|+|-.||||||-+-|+...++.  ..|+++|..|..=-.=.+-|+.+    |+|+....+|+    |+-=
T Consensus        29 ~~~~g~~~lNfmsspGSGKT~LiEk~~~~~~~--~~K~Avi~GD~~t~~DA~RlR~~----G~~a~~~nTGk~CHLdA~m  102 (225)
T TIGR00073        29 FDKEGLLVLNFMSSPGSGKTTLIEKLIERLDD--EVKIAVIEGDVQTKNDADRLRKY----GVPAIQINTGKECHLDAHM  102 (225)
T ss_pred             HHHCCCEEEEECCCCCCCHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHHC----CCEEEEECCCCCCCCHHHH
T ss_conf             98659789980258861158999999998457--89789997553225569999864----9868863688644401667


Q ss_pred             HH--HHHHHHHHHCCC-CEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHH-HHHHHHHHCCCCC
Q ss_conf             99--999999974158-86998334422--211246899999985138511000310111225688-8898876358440
Q gi|254780711|r  171 IA--IRATQSARDGGY-DAVILDTAGRN--HINDSLMQEISEIKSLTNPHEILLVADALTGQDAVH-LARNFDKIVDLTG  244 (461)
Q Consensus       171 i~--~~a~~~a~~~~~-D~iiiDTaGR~--~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~-~a~~F~~~~~i~g  244 (461)
                      |+  +++++....... |++||-=-|=|  +.+-+|           -.+..+-|++.|=|-|-+. --..|..+   +-
T Consensus       103 v~G~~~~L~~~~ld~~~DlL~IENVGNLvCP~~FdL-----------Ge~~rVvllSVTEGdDk~lKyP~~F~~A---d~  168 (225)
T TIGR00073       103 VAGAIHALKDLPLDDISDLLLIENVGNLVCPADFDL-----------GEHMRVVLLSVTEGDDKVLKYPAMFKEA---DL  168 (225)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEEECCCCEECCCCCC-----------CCCCEEEEEEECCCCCCCCCCCHHHHHH---HH
T ss_conf             865875542168887146268864476100673112-----------3563079998658999654661588744---45


Q ss_pred             EEEEECCCCCCCC
Q ss_conf             7764115766330
Q gi|254780711|r  245 IILTRMDGDGRGG  257 (461)
Q Consensus       245 iIlTKlD~~akgG  257 (461)
                      +++||.|=-.-.|
T Consensus       169 ~~inK~DL~~~v~  181 (225)
T TIGR00073       169 ILINKVDLAEAVG  181 (225)
T ss_pred             HHHCHHHHHHHHC
T ss_conf             6214788997707


No 190
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.05  E-value=0.016  Score=39.36  Aligned_cols=28  Identities=25%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             88418996234433346889999999986
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKT  126 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~  126 (461)
                      .+.+ .++||-.|+|||.-+=-||.....
T Consensus       198 ~KNN-piLvGepGVGKTAIvEGLA~rI~~  225 (857)
T PRK10865        198 TKNN-PVLIGEPGVGKTAIVEGLAQRIIN  225 (857)
T ss_pred             CCCC-CEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             7899-758789998899999999999983


No 191
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.05  E-value=0.0063  Score=42.56  Aligned_cols=194  Identities=19%  Similarity=0.229  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             99999999998718774210002588418996234433346889999999986148950782054221004779999851
Q gi|254780711|r   74 VIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE  153 (461)
Q Consensus        74 i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~  153 (461)
                      +++.=++||-+-||+.-       .-|+.+++-|-+|+|||--+..+|+-+.. ++++|..+++..-=-.=+.|...++-
T Consensus         9 ii~~gndelDkrLGGGi-------P~GsL~lIEGd~~tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T~refi~qm~sl~y   80 (235)
T COG2874           9 IIKSGNDELDKRLGGGI-------PVGSLILIEGDNGTGKSVLSQRFAYGFLM-NGYRVTYVSTELTVREFIKQMESLSY   80 (235)
T ss_pred             HCCCCCHHHHHHCCCCC-------CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECHHHHHHHHHHHHCCC
T ss_conf             20678477786516997-------46769999888985488999999998870-89548999840359999998886388


Q ss_pred             CCC------------CCCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEECCCCCCCHH------HHHHHHHHHHHHCCC
Q ss_conf             034------------742223321036-8999999999974158869983344222112------468999999851385
Q gi|254780711|r  154 QIQ------------VDTLEVIPEQSP-EKIAIRATQSARDGGYDAVILDTAGRNHIND------SLMQEISEIKSLTNP  214 (461)
Q Consensus       154 ~~~------------v~~~~~~~~~dp-~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~------~lm~El~~i~~~~~p  214 (461)
                      -+.            +.+++...+..+ -.....-++.-+....||||||+---....+      +.|..++++...-+ 
T Consensus        81 dv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gK-  159 (235)
T COG2874          81 DVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGK-  159 (235)
T ss_pred             CCHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCC-
T ss_conf             7168775062689993245422573778999999975577523778999534377652649999999999999872897-


Q ss_pred             CCCCCCCCHHCCHHHHHHHHHH--HHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHH
Q ss_conf             1100031011122568888988--76358440776411576633036777888478730261586723210013688
Q gi|254780711|r  215 HEILLVADALTGQDAVHLARNF--DKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDR  289 (461)
Q Consensus       215 ~e~~lV~da~~Gq~a~~~a~~F--~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~  289 (461)
                       -+++.++    |.+++..-.+  ...  -|..+  +|--..-||-..+...    -++|.|..+.+.+.-+|+.+.
T Consensus       160 -vIilTvh----p~~l~e~~~~rirs~--~d~~l--~L~~~~~Gg~~~~~~~----i~K~~ga~~s~~~~I~F~V~P  223 (235)
T COG2874         160 -VIILTVH----PSALDEDVLTRIRSA--CDVYL--RLRLEELGGDLIKVLE----IVKYRGARKSFQNIISFRVEP  223 (235)
T ss_pred             -EEEEEEC----HHHCCHHHHHHHHHH--HHEEE--EEEHHHHCCEEEEEEE----EEEECCCHHHCCCCEEEEECC
T ss_conf             -8999947----343378999999875--20258--9870231784558778----766547133217740588559


No 192
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.03  E-value=0.0098  Score=41.07  Aligned_cols=96  Identities=16%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      -.++=+.|+-||||||-|--++...++.+++.+-+=+.-+|||.=+.|+-..- .-++.++......+...++.......
T Consensus        60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~-~d~l~v~~~~~~e~q~~i~~~~~~~~  138 (279)
T COG0468          60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL-LDNLLVSQPDTGEQQLEIAEKLARSG  138 (279)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH-HCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             35899846887654668999988865379808999589998999999988754-21536866897799999999998754


Q ss_pred             HHCCCCEEEEECCCCCCC
Q ss_conf             741588699833442221
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHI  197 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~  197 (461)
                      .. .+|+|+||...-+..
T Consensus       139 ~~-~i~LvVVDSvaa~~r  155 (279)
T COG0468         139 AE-KIDLLVVDSVAALVR  155 (279)
T ss_pred             CC-CCCEEEEECCCCCCH
T ss_conf             68-878899825743463


No 193
>cd04171 SelB SelB subfamily.  SelB is an elongation factor needed for the co-translational incorporation of selenocysteine.  Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin.  In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu).  It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons.  In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence).  The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation.  Archaeal and animal mechanisms of selenocysteine incorporation are more complex.  Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.03  E-value=0.0052  Score=43.15  Aligned_cols=143  Identities=21%  Similarity=0.287  Sum_probs=72.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      ||.++|-.-+||||-+-+|...       .     +|  |.. .|+      +-|+..       |+.   +..++  ..
T Consensus         2 vVaivG~~n~GKSTL~n~L~g~-------~-----~d--~~~-~e~------~~giTi-------~~~---~~~~~--~~   48 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGI-------E-----TD--RLP-EEK------KRGITI-------DLG---FAYLD--LP   48 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHCC-------C-----CC--CCH-HHH------CCCEEE-------EEE---EEEEE--CC
T ss_conf             9999926887299999998496-------4-----66--333-333------486379-------854---68786--48


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH--HHHHHHHHHHHCCCCC--EEEEECCCCCCCC
Q ss_conf             15886998334422211246899999985138511000310111225--6888898876358440--7764115766330
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD--AVHLARNFDKIVDLTG--IILTRMDGDGRGG  257 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~--a~~~a~~F~~~~~i~g--iIlTKlD~~akgG  257 (461)
                      .+.-+.+|||+|  |  +.+..++..  .+...|-++||+||.-|-.  ..+..... +..++..  ++++|+|--.+-.
T Consensus        49 ~~~~i~~iDtPG--h--~~~~~~~~~--~~~~aD~~llVvda~~g~~~q~~e~~~~~-~~~~i~~~ivvlNK~D~v~~~~  121 (164)
T cd04171          49 SGKRLGFIDVPG--H--EKFIKNMLA--GAGGIDLVLLVVAADEGIMPQTREHLEIL-ELLGIKRGLVVLTKADLVDEDW  121 (164)
T ss_pred             CCCEEEEEECCC--H--HHHHHHHHH--HHHHCCEEEEEEECCCCCCHHHHHHHHHH-HHCCCCCEEEEEECCCCCCHHH
T ss_conf             998999994878--7--999999999--87426725899861778888899999999-8738872787346342579789


Q ss_pred             HHH---HHHH------HHCCCHHHEE--CCCCCCCCCC
Q ss_conf             367---7788------8478730261--5867232100
Q gi|254780711|r  258 AAL---SMRT------VTGKPIKAIG--TGEKINDLEN  284 (461)
Q Consensus       258 ~al---s~~~------~~~~PI~fig--~GE~~~dle~  284 (461)
                      ...   .+..      ..+.||.+++  +|+.+++|..
T Consensus       122 ~~~~~~~i~~~l~~~~~~~~pii~iSA~tG~Gi~eL~~  159 (164)
T cd04171         122 LELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKE  159 (164)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf             99999999999974399998299946989829999999


No 194
>cd04169 RF3 RF3 subfamily.  Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria.  Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide.  The class II release factor RF3 then initiates the release of the class I RF from the ribosome.  RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state.  GDP/GTP exchange occurs, followed by the release of the class I RF.  Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome.  RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.02  E-value=0.00075  Score=49.58  Aligned_cols=152  Identities=15%  Similarity=0.168  Sum_probs=81.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECC---CCC---CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             1899623443334688999999998614895078205---422---1004779999851034742223321036899999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASL---DVH---RPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR  174 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~---Dt~---R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~  174 (461)
                      ..|.++|--||||||.+=-|.+.-..  -.+.+-|.+   |..   =.-..|+-+      ++.+...            
T Consensus         3 Rniai~gH~gaGKTtL~EalL~~~G~--i~r~G~V~~~~~~g~t~~D~~~eE~~R------~iSi~~~------------   62 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGA--IREAGAVKARKSRKHATSDWMEIEKQR------GISVTSS------------   62 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC--CCCCCEEEECCCCCCCCCCCHHHHHHC------CCEEECC------------
T ss_conf             17999847999989999999986686--333854630368886046887999865------9448636------------


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHH-HHHHHHHHHCCCC-CEEEEECCC
Q ss_conf             99999741588699833442221124689999998513851100031011122568-8889887635844-077641157
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAV-HLARNFDKIVDLT-GIILTRMDG  252 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~-~~a~~F~~~~~i~-giIlTKlD~  252 (461)
                       +-.+.-+++.+=||||+|-    .+...|...-.+++  |-.++|+||..|=++. ..+-.+.+..++- =++++|||-
T Consensus        63 -~~~~~w~~~kinliDTPG~----~DF~~e~~~al~v~--D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~iifINKmDr  135 (267)
T cd04169          63 -VMQFEYRDCVINLLDTPGH----EDFSEDTYRTLTAV--DSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDR  135 (267)
T ss_pred             -EEEEEECCEEEEEEECCCC----HHHHHHHHHHHHHH--HCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             -3788789989999979697----78999999999886--4547995256665355899999999729997999853456


Q ss_pred             -CCCCCHHH-HHHHHHCCCHHH----EECCCCC
Q ss_conf             -66330367-778884787302----6158672
Q gi|254780711|r  253 -DGRGGAAL-SMRTVTGKPIKA----IGTGEKI  279 (461)
Q Consensus       253 -~akgG~al-s~~~~~~~PI~f----ig~GE~~  279 (461)
                       .|..-.+| ++....+.++.=    ||.|+.+
T Consensus       136 ~~adf~~~l~~i~~~lg~~~vpi~lPig~~~~f  168 (267)
T cd04169         136 EGRDPLELLDEIEEELGIDCTPLTWPIGMGKDF  168 (267)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCE
T ss_conf             789878999999998687751168775169944


No 195
>PRK08181 transposase; Validated
Probab=97.02  E-value=0.016  Score=39.38  Aligned_cols=143  Identities=16%  Similarity=0.209  Sum_probs=76.2

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHH
Q ss_conf             9985246969999999999999830-31112699899999999-999998718774210002588418996234433346
Q gi|254780711|r   37 TFLEADVSLEVVQSFSKRVQEKAKG-EKILRSIQPGQMVIKIV-HDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKT  114 (461)
Q Consensus        37 aLLeaDV~~~vv~~~~~~Ik~k~~~-~~~~~~~~~~~~i~kiv-~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKT  114 (461)
                      .|++..+..+-.+.+-..++.--.. .+..+.++-.  ....+ ...+..+....    .+...+- -|+|+|+.|+|||
T Consensus        48 ~Lle~E~~~R~~rr~~rrlk~A~fp~~ktLe~fDf~--~~p~i~~~~i~~L~~~~----~fi~~~~-Nvil~Gp~GtGKT  120 (269)
T PRK08181         48 AIAEHEIAERARRRIERHLAEAHLPPGKTLDSFDFE--AVPMISKAQVMALAAGD----SWLAKGA-NLLLFGPPGGGKS  120 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC--CCCCCCHHHHHHHHCCC----HHHHCCC-EEEEECCCCCCHH
T ss_conf             999999999999999999986897998886547855--68998999999996567----5886487-0899899998788


Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             88999999998614895078205422100477999985103474222332103689999999999741588699833442
Q gi|254780711|r  115 TTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGR  194 (461)
Q Consensus       115 TT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR  194 (461)
                      --+.-||..... .|++|.+++++..    +++|+.- +         ..++-     ...+.  +-..+|++|||--|-
T Consensus       121 hLA~Alg~~A~~-~G~~V~f~~~~~L----~~~L~~a-~---------~~~~~-----~~~~~--~l~~~dLLIiDe~G~  178 (269)
T PRK08181        121 HLAAAIGLALIE-NGWRVLFTRTTDL----VQKLQVA-R---------RELQL-----ESAIA--KLDKFDLLILDDLAY  178 (269)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEEHHHH----HHHHHHH-H---------HCCCH-----HHHHH--HHHCCCEEEEHHCCC
T ss_conf             999999999998-7993999789999----9999997-7---------55839-----99999--974446012201056


Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             22112468999999
Q gi|254780711|r  195 NHINDSLMQEISEI  208 (461)
Q Consensus       195 ~~~d~~lm~El~~i  208 (461)
                      .+.+.+-.+-|-++
T Consensus       179 ~~~~~~~~~~lf~l  192 (269)
T PRK08181        179 VTKDQAETSVLFEL  192 (269)
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             67998999999999


No 196
>cd00881 GTP_translation_factor GTP translation factor family.  This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation.  In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.01  E-value=0.0032  Score=44.78  Aligned_cols=120  Identities=23%  Similarity=0.288  Sum_probs=64.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99623443334688999999998614-89507820542210047799998510347422233210368999999999974
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      |.++|--++||||.+..|........ ...+--...|..   ..||-+-.+-....-.                   +..
T Consensus         2 v~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~---~~E~~rgiTi~~~~~~-------------------~~~   59 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVL---KEERERGITIKSGVAT-------------------FEW   59 (189)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCC---HHHHHCCCEEEEEEEE-------------------EEE
T ss_conf             899917998999999999976472356862588850577---7888638413222799-------------------998


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-----HHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             158869983344222112468999999851385110003101112-----256888898876358440776411576
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-----QDAVHLARNFDKIVDLTGIILTRMDGD  253 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-----q~a~~~a~~F~~~~~i~giIlTKlD~~  253 (461)
                      +.+-+.+|||+|  |  .+.+.+...-..  ..|-.+||+||..|     ++.+..++.++  +++ =++++|+|--
T Consensus        60 ~~~~i~~iDTPG--h--~~f~~~~~~~l~--~aD~ailvVda~~G~~~qt~~~~~~~~~~~--~p~-iv~iNKiD~~  127 (189)
T cd00881          60 PDRRVNFIDTPG--H--EDFSSEVIRGLS--VSDGAILVVDANEGVQPQTREHLRIAREGG--LPI-IVAINKIDRV  127 (189)
T ss_pred             CCEEEEEEECCC--C--HHHHHHHHHHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEECCCCC
T ss_conf             998999996998--1--889999999986--468569999879899878999999999769--987-9999897187


No 197
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369    GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=97.00  E-value=0.00018  Score=54.31  Aligned_cols=122  Identities=20%  Similarity=0.262  Sum_probs=67.3

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE-EEEEECCCCC
Q ss_conf             999999852469699999999999998303111269989999999999999871877421000258841-8996234433
Q gi|254780711|r   33 EIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPL-VIMLVGLQGS  111 (461)
Q Consensus        33 ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~-vIllvGl~Gs  111 (461)
                      |||-+-+=+-.+-+||-.+.++=..+..-+++  |.++.      +.+.|-+++           ..|+ +||+.||+||
T Consensus       196 DiRVSt~Pt~fGERvVMRLLDK~~~~l~L~~L--Gm~~~------~l~~~~~li-----------~rpHGIiLVTGPTGS  256 (495)
T TIGR02533       196 DIRVSTVPTSFGERVVMRLLDKDAVRLDLEAL--GMSPE------LLSSLERLI-----------KRPHGIILVTGPTGS  256 (495)
T ss_pred             EEEEEECCCCCCCEEEHHHHCHHHHHHHHHHC--CCCHH------HHHHHHHHH-----------HCCCCEEEECCCCCC
T ss_conf             67885305899710000011204777758864--88888------999999997-----------188961884177898


Q ss_pred             CHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             346889999999986148950782054--221004779999851034742223321036899999999997415886998
Q gi|254780711|r  112 GKTTTTAKIAYHLKTLKKKKILMASLD--VHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVIL  189 (461)
Q Consensus       112 GKTTT~aKLA~~~~~~~~~kV~lv~~D--t~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iii  189 (461)
                      |||||.===-+.| +...++++-|- |  =|+.-++-|.+...+ +|..|-             .|+...-.+.=|+|-|
T Consensus       257 GKtTTLYaaL~~L-N~~~~NIlTvE-DPVEY~i~GIgQ~Qvn~k-IglTFA-------------~GLRaILRQDPDiiMv  320 (495)
T TIGR02533       257 GKTTTLYAALSRL-NTPERNILTVE-DPVEYQIEGIGQIQVNPK-IGLTFA-------------AGLRAILRQDPDIIMV  320 (495)
T ss_pred             CHHHHHHHHHHHH-CCCCCCEEEEE-CCEEEEECCCCEEEECCC-CCHHHH-------------HHHHHHHCCCCCEEEE
T ss_conf             5258899999863-58997156865-782476248763651465-430388-------------8878864279988998


No 198
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.00  E-value=0.0098  Score=41.07  Aligned_cols=194  Identities=14%  Similarity=0.137  Sum_probs=92.7

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf             5884189962344333468899999999861489507820542210047799998510347422233210-368999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA  175 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a  175 (461)
                      ..-|+.+||.|+.|+||||++--+|+.+--..+.  .--.|+.-+     .-+........+++.....+ .-++-+++-
T Consensus        33 ~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~--~~~PCg~C~-----sC~~i~~g~hpDViEiDaasn~gID~IReL  105 (523)
T PRK08451         33 NRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGP--SSTPCGTCA-----QCQAALEGRHIDIIEMDAASNRGIDDIRNL  105 (523)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCCH-----HHHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf             9967158757899868899999999997599999--989888788-----899986489998551055333689999999


Q ss_pred             HHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHH----HHHHHHHH----------
Q ss_conf             99997----4158869983344222112468999999851385110003101112256----88889887----------
Q gi|254780711|r  176 TQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDA----VHLARNFD----------  237 (461)
Q Consensus       176 ~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a----~~~a~~F~----------  237 (461)
                      ++.+.    ...|-|+|||-|-++..+.  ..-|-+..+.- |..++|++-.+--+.-    ..-.+.|+          
T Consensus       106 ie~~~~~P~~gryKV~IIDEah~Lt~~A--~NALLKTLEEP-P~~vvFILaTTep~KLp~TIlSRCQ~f~Fk~I~~~~I~  182 (523)
T PRK08451        106 IEQTKYKPSMARFKIFIIDEVHMLTKEA--FNALLKTLEEP-PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSII  182 (523)
T ss_pred             HHHHCCCCCCCCEEEEEEECCCCCCHHH--HHHHHHHCCCC-CCCCEEEEECCCHHHCHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             9972358867972799982603048999--99999970389-87837999759947684888742031103379999999


Q ss_pred             ---------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf             ---------635844----0776411576633036777888478730261586723210013688998773586278899
Q gi|254780711|r  238 ---------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLV  304 (461)
Q Consensus       238 ---------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~  304 (461)
                               +.+.++    .+|...-||+-|  -|||+-..   -|.|- .| +++       ..-+..+||.=|-..+.
T Consensus       183 ~~L~~I~~~E~i~~e~~AL~~IA~~a~GslR--DalslLdQ---~i~~~-~~-~i~-------~~~v~~~lG~~d~~~~~  248 (523)
T PRK08451        183 SHLKTILNKEGVSYEPEALEILARSGSGSLR--DTLTLLDQ---AIIFC-KN-AIT-------ESKVADMLGLLDPSKIE  248 (523)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHHC-CC-CCC-------HHHHHHHHCCCCHHHHH
T ss_conf             9999999983998799999999997789486--89879999---99847-99-877-------99999985888999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9874211267
Q gi|254780711|r  305 EKAARNLNEK  314 (461)
Q Consensus       305 e~~~~~~d~~  314 (461)
                      +-.+..++.+
T Consensus       249 ~l~~~i~~~d  258 (523)
T PRK08451        249 DFFQAILNKD  258 (523)
T ss_pred             HHHHHHHHCC
T ss_conf             9999999458


No 199
>cd01894 EngA1 EngA1 subfamily.  This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains.  Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability.  A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.00  E-value=0.0047  Score=43.50  Aligned_cols=119  Identities=20%  Similarity=0.304  Sum_probs=62.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             62344333468899999999861489507820542210047799998510347422233210368999999999974158
Q gi|254780711|r  105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGY  184 (461)
Q Consensus       105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~  184 (461)
                      ++|..-+||||-+=+|.       |.++.+|+--   |+.        .+  -+.+..                ....++
T Consensus         2 ivG~pN~GKSsL~N~l~-------~~~~~ivs~~---~gt--------Tr--~~~~~~----------------~~~~~~   45 (157)
T cd01894           2 IVGRPNVGKSTLFNRLT-------GRRDAIVEDT---PGV--------TR--DRIYGE----------------AEWGGR   45 (157)
T ss_pred             CCCCCCCCHHHHHHHHH-------CCCCEEEECC---CCC--------EE--EEEEEE----------------EEECCE
T ss_conf             04899988999999995-------8875354079---993--------56--678999----------------999998


Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHH-HHH-CCCCCCCCCCCHHCCHHHHH--HHHHHHHHCCCC-CEEEEECCCCCCCCHH
Q ss_conf             869983344222112468999999-851-38511000310111225688--889887635844-0776411576633036
Q gi|254780711|r  185 DAVILDTAGRNHINDSLMQEISEI-KSL-TNPHEILLVADALTGQDAVH--LARNFDKIVDLT-GIILTRMDGDGRGGAA  259 (461)
Q Consensus       185 D~iiiDTaGR~~~d~~lm~El~~i-~~~-~~p~e~~lV~da~~Gq~a~~--~a~~F~~~~~i~-giIlTKlD~~akgG~a  259 (461)
                      .++++||+|=......+-.++.+. ... -..|-+++|+||..|-...+  +.+...+ .+.- -+++.|.|--.+-...
T Consensus        46 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~i~~ad~il~viDa~~~~~~~d~~i~~~l~~-~~kp~i~v~NK~D~~~~~~~~  124 (157)
T cd01894          46 EFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRK-SKKPVILVVNKVDNIKEEDEA  124 (157)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-HCCCEEEEEECCCCCCCHHHH
T ss_conf             8999857875556606789999999999986590799998999999899999999998-479809999787165864569


Q ss_pred             H
Q ss_conf             7
Q gi|254780711|r  260 L  260 (461)
Q Consensus       260 l  260 (461)
                      .
T Consensus       125 ~  125 (157)
T cd01894         125 A  125 (157)
T ss_pred             H
T ss_conf             9


No 200
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.99  E-value=0.005  Score=43.30  Aligned_cols=82  Identities=18%  Similarity=0.130  Sum_probs=45.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      +|++.|+.||||||.+..||..+    +  ...+-.|.||+.+.-.    .-..|+|........=-..+..........
T Consensus         1 liiv~GvsGsGKSTia~~La~~l----g--~~~i~~D~~h~~~n~~----km~~G~pL~d~dr~~wl~~l~~~~~~~~~~   70 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL----G--APFIDGDDLHPPANIA----KMAAGIPLNDEDRWPWLQALTDALLAKLAS   70 (150)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH----C--CCEECCCCCCCHHHHH----HHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98999189999999999999971----9--9564154335476899----986799988523789999999999999984


Q ss_pred             CCCCEEEEECCC
Q ss_conf             158869983344
Q gi|254780711|r  182 GGYDAVILDTAG  193 (461)
Q Consensus       182 ~~~D~iiiDTaG  193 (461)
                      .++.+|+-=|+-
T Consensus        71 ~g~~vVv~cSaL   82 (150)
T cd02021          71 AGEGVVVACSAL   82 (150)
T ss_pred             CCCCEEEEEHHH
T ss_conf             499879984332


No 201
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily.  Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus.  Arl5 is developmentally regulated during embryogenesis in mice.  Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion.  Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library.  It is found in brain, heart, lung, cartilage, and kidney.  No function has been assigned for Arl8 to date.
Probab=96.99  E-value=0.0036  Score=44.39  Aligned_cols=137  Identities=19%  Similarity=0.327  Sum_probs=67.1

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ  177 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~  177 (461)
                      ++-..|+++|+.||||||-+.+|.    .  +..+-..      |           .+|+.+...               
T Consensus        13 ~k~~KililG~~~sGKTsil~~l~----~--~~~~~~~------p-----------T~G~~~~~i---------------   54 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFL----L--GEVVHTS------P-----------TIGSNVEEI---------------   54 (174)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHH----C--CCCCCCC------C-----------CCCCCEEEE---------------
T ss_conf             977999999899998899999997----3--9927716------7-----------236046999---------------


Q ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHHHHCC---CCC----EEEEE
Q ss_conf             997415886998334422211246899999985138511000310111225688889-8876358---440----77641
Q gi|254780711|r  178 SARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR-NFDKIVD---LTG----IILTR  249 (461)
Q Consensus       178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~~~~~---i~g----iIlTK  249 (461)
                        ..+++.+.+-||+|+-...     .+-..+ .-+.+-+++|+|++-- +.++.++ .+++.+.   +..    |+.+|
T Consensus        55 --~~~~~~~~iwD~~G~e~~~-----~~~~~y-~~~a~~ii~VvD~sd~-~~~~~~~~~l~~~l~~~~~~~~pili~~NK  125 (174)
T cd04153          55 --VYKNIRFLMWDIGGQESLR-----SSWNTY-YTNTDAVILVIDSTDR-ERLPLTKEELYKMLAHEDLRKAVLLVLANK  125 (174)
T ss_pred             --EECCEEEEEEECCCCCCCC-----CHHHHH-HCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf             --9788899999899986566-----226777-0577537999976788-899999999999972610169828999955


Q ss_pred             CCCC-CCC----CHHHHHHHHHCCCHHHEE----CCCCCCC
Q ss_conf             1576-633----036777888478730261----5867232
Q gi|254780711|r  250 MDGD-GRG----GAALSMRTVTGKPIKAIG----TGEKIND  281 (461)
Q Consensus       250 lD~~-akg----G~als~~~~~~~PI~fig----~GE~~~d  281 (461)
                      .|-. +..    -..+.+......|+.|..    +||.+++
T Consensus       126 ~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~Gv~e  166 (174)
T cd04153         126 QDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf             55655789999999974777635980999966858919899


No 202
>PRK09183 transposase/IS protein; Provisional
Probab=96.98  E-value=0.008  Score=41.77  Aligned_cols=145  Identities=14%  Similarity=0.091  Sum_probs=78.0

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHH
Q ss_conf             99985246969999999999999830-31112699899999999999998718774210002588418996234433346
Q gi|254780711|r   36 RTFLEADVSLEVVQSFSKRVQEKAKG-EKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKT  114 (461)
Q Consensus        36 ~aLLeaDV~~~vv~~~~~~Ik~k~~~-~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKT  114 (461)
                      ..|+++-+..+-.+.+...+|.-... .+....++-.  ...-+....+.-|.    ...+...+- -|+|+|+.|+|||
T Consensus        43 ~~Ll~~E~~~R~~rr~~r~lk~A~fp~~ktle~fDf~--~~~~l~~~~i~~La----~~~fi~~~~-Nvil~G~~GtGKT  115 (258)
T PRK09183         43 EHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFT--FATGAPQKQLQSLR----SLSFIERNE-NIVLLGPSGVGKT  115 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC--CCCCCCHHHHHHHH----CCCHHHCCC-CEEEECCCCCCHH
T ss_conf             9999999999999999999997799998777555654--68862389999882----581665588-6799899998689


Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             88999999998614895078205422100477999985103474222332103689999999999741588699833442
Q gi|254780711|r  115 TTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGR  194 (461)
Q Consensus       115 TT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR  194 (461)
                      --+.-||..... .|++|.++++..    -+++|+.- ..         .++- .    ..+.. .-..+|++|||--|-
T Consensus       116 hLA~Alg~~A~~-~G~~v~f~~~~~----L~~~L~~a-~~---------~~~~-~----~~l~r-~l~~~dLLIiDdlG~  174 (258)
T PRK09183        116 HLAIALGYEAVR-AGIKVRFTTAAD----LLLQLSTA-QR---------QGRY-K----TTLQR-GVMAPRLLIIDEIGY  174 (258)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEEHHH----HHHHHHHH-HH---------CCCH-H----HHHHH-HHCCCCEEEEHHHHC
T ss_conf             999999999998-799399978999----99999999-87---------6859-9----99998-743465144313315


Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             22112468999999
Q gi|254780711|r  195 NHINDSLMQEISEI  208 (461)
Q Consensus       195 ~~~d~~lm~El~~i  208 (461)
                      .+.+.+-.+-+-++
T Consensus       175 ~~~~~~~~~~lfel  188 (258)
T PRK09183        175 LPFSQEEANLFFQV  188 (258)
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             46888899999999


No 203
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.98  E-value=0.0041  Score=43.97  Aligned_cols=94  Identities=26%  Similarity=0.316  Sum_probs=54.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHHHH
Q ss_conf             8996234433346889999999986148950782054221004779999851034742223--32103689999999999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV--IPEQSPEKIAIRATQSA  179 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~--~~~~dp~~i~~~a~~~a  179 (461)
                      .|+++|+.||||||-+.+||..+    +. +-+-+.|.||++-.++ ..++..+.--+-..  .+..-...++...+..+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~----~i-~hlstgd~~r~~~~~~-t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~   75 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL----GL-PHLDTGDILRAAIAER-TELGEEIKKYIDKGELVPDEIVNGLVKERLDEA   75 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHC----CC-CEECCCCCCCHHHCCC-CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf             79998999998899999999976----99-7855220111100323-689999999987589504176997999999750


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             741588699833442221124689
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQ  203 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~  203 (461)
                       +... .+|+|--.|...-...++
T Consensus        76 -d~~~-~~I~dg~PR~~~qa~~l~   97 (178)
T COG0563          76 -DCKA-GFILDGFPRTLCQARALK   97 (178)
T ss_pred             -CCCC-EEEEECCCCHHHHHHHHH
T ss_conf             -6577-299989983699999999


No 204
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.96  E-value=0.0028  Score=45.28  Aligned_cols=115  Identities=20%  Similarity=0.227  Sum_probs=61.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-HCC--CCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCC-CCCCCHHHHHHHHH
Q ss_conf             8996234433346889999999986-148--9507820542210047799--9985103474222-33210368999999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKT-LKK--KKILMASLDVHRPAAQEQL--RYLGEQIQVDTLE-VIPEQSPEKIAIRA  175 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~-~~~--~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~-~~~~~dp~~i~~~a  175 (461)
                      +.++.|=.|.|||||+++|-+-+.. ..+  .+|. .+|=|-|+||-=+=  ..-..++.++-.. .....++..| -+-
T Consensus       164 ~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~-LaAPTGKAAaRL~Esi~~~~~~l~~~~~~~~~~p~~a~Ti-HRL  241 (607)
T PRK10875        164 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL-HRL  241 (607)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEE-EECCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEH-HHH
T ss_conf             78996799987788999999999996458997089-9882289999999999878753476656663376556658-975


Q ss_pred             HHH------HH---H--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCH
Q ss_conf             999------97---4--1588699833442221124689999998513851-10003101
Q gi|254780711|r  176 TQS------AR---D--GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADA  223 (461)
Q Consensus       176 ~~~------a~---~--~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da  223 (461)
                      +..      ++   .  -.+|+||||-|-.  .|-.||..   +.+++.|+ .++||-|.
T Consensus       242 Lg~~p~~~~f~~~~~nPL~~DvlIVDEASM--VDl~Lm~~---LL~Alp~~aRLILvGD~  296 (607)
T PRK10875        242 LGAQPGSQRLRYHAGNPLHLDVLVVDEASM--IDLPMMSR---LIDALPDHARVIFLGDR  296 (607)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEECCHH--HHHHHHHH---HHHHCCCCCEEEEECCH
T ss_conf             296789876565779999889899907336--65999999---99828999889996562


No 205
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96  E-value=0.015  Score=39.75  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=21.2

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             884189962344333468899999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHL  124 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~  124 (461)
                      +-.+.+||.|..|+||||.+-=||+-+
T Consensus        36 r~~haylf~g~rg~gktt~ari~ak~l   62 (696)
T PRK06872         36 RLHHAYLFSGTRGVGKTSIARLFAKGL   62 (696)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             863047511789888889999999986


No 206
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.95  E-value=0.0017  Score=46.89  Aligned_cols=77  Identities=25%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             CCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             841-8996234433346889999999986148950782054--2210047799998510347422233210368999999
Q gi|254780711|r   99 SPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD--VHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA  175 (461)
Q Consensus        99 ~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D--t~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a  175 (461)
                      +|+ .|++.||+|||||||.-.+-.++.. ..+++.-|. |  -|..-.+.|++...+ +|.+|-             .+
T Consensus       256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~-~~~nI~TiE-DPVE~~~~gI~Q~qVN~k-~gltfa-------------~~  319 (500)
T COG2804         256 RPQGLILVTGPTGSGKTTTLYAALSELNT-PERNIITIE-DPVEYQLPGINQVQVNPK-IGLTFA-------------RA  319 (500)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEE-CCEEEECCCCCEEECCCC-CCCCHH-------------HH
T ss_conf             89708999689999889999999998627-885089840-780451598515631403-599789-------------99


Q ss_pred             HHHHHHCCCCEEEEEC
Q ss_conf             9999741588699833
Q gi|254780711|r  176 TQSARDGGYDAVILDT  191 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDT  191 (461)
                      +..+-.+.=|+|+|.-
T Consensus       320 LRa~LRqDPDvImVGE  335 (500)
T COG2804         320 LRAILRQDPDVIMVGE  335 (500)
T ss_pred             HHHHHCCCCCEEEEEC
T ss_conf             9998665998599835


No 207
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.93  E-value=0.013  Score=40.07  Aligned_cols=100  Identities=25%  Similarity=0.329  Sum_probs=72.3

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC-
Q ss_conf             9999871877421000258841899623443334688999999998614895078205422100477999985103474-
Q gi|254780711|r   80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD-  158 (461)
Q Consensus        80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~-  158 (461)
                      .||-++||+.-.     +  -.+||+-|-.|.||+|-+-.+|..+.+  +.+|+-|+..-    ..+|++.=|+++++. 
T Consensus        77 ~ElDRVLGGGlV-----~--GS~iLlgGePGIGKSTLlLQ~a~~la~--~~~vLYvSGEE----S~~Qik~RA~RLg~~~  143 (454)
T PRK11823         77 GELDRVLGGGLV-----P--GSVVLIGGDPGIGKSTLLLQVAAALAA--GGKVLYVSGEE----SLQQIKLRAERLGLPS  143 (454)
T ss_pred             HHHHHCCCCCCC-----C--CEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEECCCH----HHHHHHHHHHHHCCCC
T ss_conf             566522158720-----6--648995079988899999999999855--99579981501----5789999999758888


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             -22233210368999999999974158869983344222
Q gi|254780711|r  159 -TLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNH  196 (461)
Q Consensus       159 -~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~  196 (461)
                       -+....+.|.-.|    ++.......|+++||.-=-.+
T Consensus       144 ~~l~l~~et~l~~I----l~~i~~~~P~~lIIDSIQT~~  178 (454)
T PRK11823        144 DNLYLLAETNLEDI----LATIEEEKPDLVVIDSIQTMY  178 (454)
T ss_pred             CCCEEEECCCHHHH----HHHHHHHCCCEEEEECHHEEE
T ss_conf             87378853689999----999986099889994311154


No 208
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.93  E-value=0.0015  Score=47.27  Aligned_cols=45  Identities=24%  Similarity=0.396  Sum_probs=39.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf             8841899623443334688999999998614895078205422100
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA  143 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a  143 (461)
                      +++.||-|+|+.||||||-+-+|..++.. .+.++.++-.|.+|.+
T Consensus         2 ~kg~viWltGlsgSGKTTia~~l~~~L~~-~~~~~~~LDGD~lR~~   46 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTISHALAEKLRA-RGYPVEVLDGDIVRTN   46 (175)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHHH
T ss_conf             98889998898999999999999999998-6996799776888875


No 209
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.92  E-value=0.017  Score=39.33  Aligned_cols=106  Identities=24%  Similarity=0.278  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99999998718774210002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r   77 IVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ  156 (461)
Q Consensus        77 iv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~  156 (461)
                      .-+.||-++||+.-.       +-.+||+-|=.|.||+|..-.+|+.+..+ + +|+.|+..-    ...|.+.-|++++
T Consensus        77 tg~~EldRVLGGG~V-------~Gs~iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEE----S~~QiklRA~RL~  143 (456)
T COG1066          77 TGIEELDRVLGGGLV-------PGSVILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEE----SLQQIKLRADRLG  143 (456)
T ss_pred             CCHHHHHHHHCCCCC-------CCCEEEECCCCCCCHHHHHHHHHHHHHHC-C-CEEEEECCC----CHHHHHHHHHHHC
T ss_conf             781888765367723-------66179973689877989999999998705-9-579996776----7899999999828


Q ss_pred             CCCC--CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf             7422--233210368999999999974158869983344222112
Q gi|254780711|r  157 VDTL--EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIND  199 (461)
Q Consensus       157 v~~~--~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~  199 (461)
                      ++..  ....+.+--.|    +......+.|+++||.---++.++
T Consensus       144 ~~~~~l~l~aEt~~e~I----~~~l~~~~p~lvVIDSIQT~~s~~  184 (456)
T COG1066         144 LPTNNLYLLAETNLEDI----IAELEQEKPDLVVIDSIQTLYSEE  184 (456)
T ss_pred             CCCCCEEEEHHCCHHHH----HHHHHHCCCCEEEEECCCEECCCC
T ss_conf             99645577411289999----999985499789996541230263


No 210
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.92  E-value=0.016  Score=39.46  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=21.5

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             8418996234433346889999999986
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKT  126 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~  126 (461)
                      +.+ .++||-.|+|||.-+=-||.....
T Consensus       194 KNN-piLVGepGVGKTAIvEGLA~rI~~  220 (852)
T TIGR03346       194 KNN-PVLIGEPGVGKTAIVEGLAQRIVN  220 (852)
T ss_pred             CCC-CCEECCCCCCHHHHHHHHHHHHHC
T ss_conf             489-721279998799999999999866


No 211
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736   DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA .   Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA.    Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage .   More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=96.91  E-value=0.0034  Score=44.62  Aligned_cols=95  Identities=21%  Similarity=0.238  Sum_probs=69.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHHHHH
Q ss_conf             9962344333468899999999861489507-82054221004779999851034742---2233210368999999999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-MASLDVHRPAAQEQLRYLGEQIQVDT---LEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~-lv~~Dt~R~aA~eQL~~~a~~~~v~~---~~~~~~~dp~~i~~~a~~~  178 (461)
                      ..++-|+||||||.-.=.|.||+.++|++|. +.-|.+-=.-|.+.|+++++..|+-+   +..+.+.=|.+-=++..|.
T Consensus       102 Fai~APTGVGKttFG~~mslflA~kKGkR~y~ilPT~lLv~Qv~~kl~~~~~k~g~~~~~l~~~yhS~L~~~~kke~~Er  181 (1843)
T TIGR01054       102 FAIVAPTGVGKTTFGLVMSLFLAKKKGKRSYIILPTTLLVKQVAEKLSSLAEKEGVGIVRLLGAYHSKLSTKEKKEVKER  181 (1843)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHH
T ss_conf             48980588767799999999986542987899947078899999998752002575000022210112654567889998


Q ss_pred             HHHCCCCEEEEECCCCCCCH
Q ss_conf             97415886998334422211
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHIN  198 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d  198 (461)
                      +.+.+|| |||=|++=++.+
T Consensus       182 i~~GDfd-ilitT~~FL~K~  200 (1843)
T TIGR01054       182 IENGDFD-ILITTSMFLSKN  200 (1843)
T ss_pred             HHCCCEE-EEHHHHHHHHHH
T ss_conf             7318917-861224688876


No 212
>PTZ00301 uridine kinase; Provisional
Probab=96.91  E-value=0.0019  Score=46.55  Aligned_cols=44  Identities=25%  Similarity=0.203  Sum_probs=36.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCCCC
Q ss_conf             8418996234433346889999999986148-9507820542210
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKILMASLDVHRP  142 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~lv~~Dt~R~  142 (461)
                      +|.||-++|..||||||.+.+|+..+..+.+ .+|.+++-|.|--
T Consensus         2 ~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~   46 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR   46 (210)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             988999968876789999999999987614998079983676677


No 213
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.91  E-value=0.028  Score=37.62  Aligned_cols=34  Identities=26%  Similarity=0.514  Sum_probs=28.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             89962344333468899999999861489507820
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS  136 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~  136 (461)
                      .|.+-|+-||||||.+.+|+.+|.. .|.+|.+..
T Consensus         2 ~IviEG~dGsGKsT~~~~L~~~L~~-~g~~v~~~~   35 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEA-RGYEVVLTR   35 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEE
T ss_conf             8999899899999999999999997-799389986


No 214
>PRK13973 thymidylate kinase; Provisional
Probab=96.91  E-value=0.022  Score=38.37  Aligned_cols=116  Identities=16%  Similarity=0.202  Sum_probs=58.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-----CCCHHHHHHHHH
Q ss_conf             189962344333468899999999861489507820542210047799998510347422233-----210368999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-----PEQSPEKIAIRA  175 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-----~~~dp~~i~~~a  175 (461)
                      .-|.|=|+-||||||-+..|+.||.. .|.+|.+.. .--..-..+.++.+-..-..+-+...     ...|-..-+.+-
T Consensus         4 ~fIv~EGiDGsGKsTq~~~L~~~L~~-~g~~v~~tr-ePg~t~~~e~ir~~ll~~~~~~~~~~~e~lLfaA~R~eh~~~~   81 (216)
T PRK13973          4 RFITFEGGEGAGKSTQIRLLAERLRA-AGYDVLVTR-EPGGSPGAEAIRHVLLSGAAELYGPAMEALLFAAARDDHVEEV   81 (216)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEE-CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             49998899999899999999999997-799579940-9899840899999984666578998999999999999999999


Q ss_pred             HHHHHHCCCCEEEEEC---------CCCCCCHHHHHHHHHHHH-HHCCCCCCCC
Q ss_conf             9999741588699833---------442221124689999998-5138511000
Q gi|254780711|r  176 TQSARDGGYDAVILDT---------AGRNHINDSLMQEISEIK-SLTNPHEILL  219 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDT---------aGR~~~d~~lm~El~~i~-~~~~p~e~~l  219 (461)
                      +..+..++ .+||.|-         ......+.+.+..+..+. ....||-+++
T Consensus        82 I~paL~~g-~~VI~DRy~~Ss~AYQg~~~~~~~~~l~~l~~~~~~~~~PDlti~  134 (216)
T PRK13973         82 IRPALARG-KIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLI  134 (216)
T ss_pred             HHHHHHCC-CEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             99999779-989867862579999774278898999999999967999998999


No 215
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily.  IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits.  As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states.  Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments.  This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.91  E-value=0.018  Score=39.12  Aligned_cols=139  Identities=24%  Similarity=0.271  Sum_probs=66.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      +|.++|-.-+||||-.-+|    ..   .++...     .++.+.|        .+..+.....              ..
T Consensus         2 ~VaivG~~n~GKSTL~n~L----~~---~~~~~~-----~~~g~T~--------~i~~~~~~~~--------------~~   47 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKI----RK---TNVAAG-----EAGGITQ--------HIGAFEVPAE--------------VL   47 (168)
T ss_pred             EEEEEECCCCCHHHHHHHH----HC---CCCCEE-----ECCCCEE--------EECEEEEEEE--------------EC
T ss_conf             8999948998598999998----58---675045-----1698168--------7153999988--------------25


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH---H--HHHHHHHHHHHCCCCCEEEEECCCC-CC
Q ss_conf             1588699833442221124689999998513851100031011122---5--6888898876358440776411576-63
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ---D--AVHLARNFDKIVDLTGIILTRMDGD-GR  255 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq---~--a~~~a~~F~~~~~i~giIlTKlD~~-ak  255 (461)
                      .++.+.+|||+|  |.+   +.++..... .-.|-++||+||..|-   +  ..++++.++  .+ -=++++|+|-- +.
T Consensus        48 ~~~~i~~iDTPG--h~~---f~~~~~~~~-~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~--~p-~ivviNKiD~~~~~  118 (168)
T cd01887          48 KIPGITFIDTPG--HEA---FTNMRARGA-SLTDIAILVVAADDGVMPQTIEAIKLAKAAN--VP-FIVALNKIDKPNAN  118 (168)
T ss_pred             CCCEEEEEECCC--CHH---HHHHHHHHH-HHCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CC-EEEEEECCCCCCCC
T ss_conf             887189998998--167---799999998-6268899998646675458999999998769--97-89999893089879


Q ss_pred             CCHHHHHHHHH----------CCCHHHEE--CCCCCCCCC
Q ss_conf             30367778884----------78730261--586723210
Q gi|254780711|r  256 GGAALSMRTVT----------GKPIKAIG--TGEKINDLE  283 (461)
Q Consensus       256 gG~als~~~~~----------~~PI~fig--~GE~~~dle  283 (461)
                      .--........          ..||.+++  +|+.+++|-
T Consensus       119 ~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~tG~gi~~L~  158 (168)
T cd01887         119 PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL  158 (168)
T ss_pred             HHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCCHHHHH
T ss_conf             8999999999754524552898759999899998999999


No 216
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=96.89  E-value=0.0047  Score=43.49  Aligned_cols=196  Identities=15%  Similarity=0.228  Sum_probs=107.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC----------------CCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             3443334688999999998614895078205422----------------100477999985103474222332103689
Q gi|254780711|r  107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH----------------RPAAQEQLRYLGEQIQVDTLEVIPEQSPEK  170 (461)
Q Consensus       107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~----------------R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~  170 (461)
                      -+-|+|||-++.-||.+|++ .|.+|++++=.--                .-.+=|.| .+++..++|++.+.   |-..
T Consensus        60 tvGGTGKTP~v~~La~~L~~-~G~~~~IiSRGYg~~~~~~~~~v~~~~~~~~vGDEpl-lla~~~~~pV~V~~---~R~~  134 (332)
T PRK00313         60 TVGGTGKTPLILWLIEHCRR-RGLRVGVVSRGYGARPPQLPWRVTADQDAAEAGDEPL-LIVQRTGVPLMIDP---DRPR  134 (332)
T ss_pred             EECCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCEEECCCCCHHHCCCHHH-HHHHCCCCCEEECC---CHHH
T ss_conf             35887777999999999997-7996589864656766677355457768455585889-99850696299807---6999


Q ss_pred             HHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHH----HHHHHHHHHCCCC
Q ss_conf             99999999974-158869983344222112468999999851385110003101112--2568----8889887635844
Q gi|254780711|r  171 IAIRATQSARD-GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG--QDAV----HLARNFDKIVDLT  243 (461)
Q Consensus       171 i~~~a~~~a~~-~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~----~~a~~F~~~~~i~  243 (461)
                          |++.+.. ..+|+||.|-+= .|..             +.+|--++|+|+..+  ..-+    .--+-....-..+
T Consensus       135 ----a~~~l~~~~~~dviIlDDGf-Qh~~-------------l~rDl~Ivvid~~~~fGNg~lLPaGpLREp~~~l~raD  196 (332)
T PRK00313        135 ----AVQALLAAEPLDLILSDDGL-QHYR-------------LARDLELVLIDAARGLGNGRCLPAGPLREPAERLAEVD  196 (332)
T ss_pred             ----HHHHHHHCCCCCEEEECCCC-CCHH-------------HCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf             ----99999964999889955853-1201-------------04880699845667888988877864558853760089


Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             0776411576633036777888478730261586723210013688998773586278899987421-126789988865
Q gi|254780711|r  244 GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARN-LNEKQAALTAKK  322 (461)
Q Consensus       244 giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~-~d~~~~~~l~~k  322 (461)
                      -+|+|+-+.+...+-+..+.   -..+..+.+|+... ++.|.+.+-+-.+=|.|+...+.+..++. +.-.+  .  .=
T Consensus       197 ~vi~~g~~~~~~~~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~k~v~a~aGIgnP~~F~~~L~~~g~~~~~--~--~F  268 (332)
T PRK00313        197 AVLYNGAAADPDDGYAFRLQ---PSALVNLRSGERRP-LDHFPAGQALHAVAGIGNPQRFFNTLEGLHWRPVP--H--PF  268 (332)
T ss_pred             EEEECCCCCCCCHHHHHHCC---CCCCEECCCCCCCC-CCHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEE--E--EC
T ss_conf             99997997555645664407---67428678856266-31102488289998159879999999987993766--4--68


Q ss_pred             HHCCCCCHHHH
Q ss_conf             31046379999
Q gi|254780711|r  323 IAKGKFDLEDL  333 (461)
Q Consensus       323 ~~~g~F~l~Df  333 (461)
                      --+-.|+-.|+
T Consensus       269 pDHh~ys~~Di  279 (332)
T PRK00313        269 ADHAQYSAQEL  279 (332)
T ss_pred             CCCCCCCHHHH
T ss_conf             99767899997


No 217
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.89  E-value=0.0099  Score=41.06  Aligned_cols=48  Identities=25%  Similarity=0.446  Sum_probs=32.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYL  151 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~  151 (461)
                      -|.+-|+-||||||-+-+|+.+|.. .|.+|.+.. .-.+.-.-+.++.+
T Consensus         5 fIviEGiDGsGKsTq~~~L~~~L~~-~g~~v~~t~-eP~~t~~g~~ir~~   52 (204)
T PRK00698          5 FITIEGIDGAGKSTQIELLAERLEE-QGRDVVFTR-EPGGTPLGEKLREL   52 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEE-CCCCCCHHHHHHHH
T ss_conf             9999889999899999999999996-799789986-99998069999999


No 218
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.87  E-value=0.011  Score=40.69  Aligned_cols=82  Identities=17%  Similarity=0.227  Sum_probs=53.1

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      +..-++|.|..|+|||..++-+|+.+.. .|++|+++++--+    ++.|+.-        |..... ....    -+..
T Consensus        95 ~~~gLlF~G~~GTGKThLA~aIan~Li~-~G~sVlf~t~~dL----l~~lr~t--------~~~~~~-~e~~----~l~~  156 (242)
T PRK07952         95 NIASFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIITVADI----MSAMKDT--------FRNSET-SEEQ----LLND  156 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEHHHH----HHHHHHH--------HHCCCC-CHHH----HHHH
T ss_conf             8871799789999789999999999998-7994999779999----9999999--------806875-6999----9998


Q ss_pred             HHHCCCCEEEEECCCCCCCHHH
Q ss_conf             9741588699833442221124
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDS  200 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~  200 (461)
                        -.++|++|||--|-.+..+.
T Consensus       157 --l~~~dLLIiDdlG~e~~t~~  176 (242)
T PRK07952        157 --LSNVDLLVIDEIGVQTESRY  176 (242)
T ss_pred             --HHCCCEEEEECCCCCCCCHH
T ss_conf             --63189898730146658888


No 219
>cd01876 YihA_EngB The YihA (EngB) subfamily.  This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control.  YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting).  Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis.  The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.87  E-value=0.013  Score=40.22  Aligned_cols=143  Identities=19%  Similarity=0.327  Sum_probs=70.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
                      |.++|...+||+|-+-.|..      .+++..++ ++  ||--       .  .+.+|..                    
T Consensus         2 IaivG~pN~GKSTL~N~L~~------~~~~~~vs-~~--~gtT-------r--~i~~~~~--------------------   43 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN------RKKLARTS-KT--PGKT-------Q--LINFFNV--------------------   43 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHC------CCCEEEEE-CC--CCEE-------E--EEEEEEE--------------------
T ss_conf             89998999999999999968------99627860-78--9778-------5--2058853--------------------


Q ss_pred             CCCEEEEECCCC--CCCHHHHHH----HHHHHHHHC-CCCCCCCCCCHHCCH--HHHHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf             588699833442--221124689----999998513-851100031011122--568888988763584-4077641157
Q gi|254780711|r  183 GYDAVILDTAGR--NHINDSLMQ----EISEIKSLT-NPHEILLVADALTGQ--DAVHLARNFDKIVDL-TGIILTRMDG  252 (461)
Q Consensus       183 ~~D~iiiDTaGR--~~~d~~lm~----El~~i~~~~-~p~e~~lV~da~~Gq--~a~~~a~~F~~~~~i-~giIlTKlD~  252 (461)
                      +..+++|||+|-  ........+    .+.+..+.. +-+-+++|+||..|-  .-...++...+ .+. -=++++|.|-
T Consensus        44 ~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~-~~kp~iiVlNKiDl  122 (170)
T cd01876          44 NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-LGIPFLVVLTKADK  122 (170)
T ss_pred             CCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEEEEEC
T ss_conf             87799996578401016877999999999999984063349999996322374868999999987-69987999986753


Q ss_pred             CCCCCH--HH-HHHHH-----HCCCHHHEEC--CCCCCCCCC
Q ss_conf             663303--67-77888-----4787302615--867232100
Q gi|254780711|r  253 DGRGGA--AL-SMRTV-----TGKPIKAIGT--GEKINDLEN  284 (461)
Q Consensus       253 ~akgG~--al-s~~~~-----~~~PI~fig~--GE~~~dle~  284 (461)
                      -.+...  .+ .+...     ...||.+++.  |+.+++|..
T Consensus       123 v~~~~~~~~~~~~~~~l~~~~~~~~ii~iSA~~g~gi~~L~~  164 (170)
T cd01876         123 LKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRA  164 (170)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf             787789999999999874217998399998899977999999


No 220
>PRK09354 recA recombinase A; Provisional
Probab=96.86  E-value=0.023  Score=38.31  Aligned_cols=94  Identities=13%  Similarity=0.210  Sum_probs=60.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf             189962344333468899999999861489507820542210047799998510347422233-2103689999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-PEQSPEKIAIRATQSA  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-~~~dp~~i~~~a~~~a  179 (461)
                      .++-+.|+..|||||.+....+..++.++ .++++-  +-.+  ++  ..|++.+||++=... ...|-.+-+.+.++..
T Consensus        61 RivEi~G~esSGKTtlal~~iaeaQk~Gg-~~a~iD--aE~a--ld--~~~a~~lGVd~d~llv~qpd~~Eqal~i~e~L  133 (350)
T PRK09354         61 RIVEIYGPESSGKTTLALHAIAEAQKAGG-TAAFID--AEHA--LD--PVYAKKLGVDIDNLLVSQPDTGEQALEIADAL  133 (350)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEE--ECCC--CC--HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHH
T ss_conf             08999889877799999999999997599-479996--0002--79--88999849771571785686799999999999


Q ss_pred             H-HCCCCEEEEECCCCCCCHHHH
Q ss_conf             7-415886998334422211246
Q gi|254780711|r  180 R-DGGYDAVILDTAGRNHINDSL  201 (461)
Q Consensus       180 ~-~~~~D~iiiDTaGR~~~d~~l  201 (461)
                      . ....|+|+||.-+-+.-..++
T Consensus       134 vrsg~vd~IVvDSVaAL~pk~Ei  156 (350)
T PRK09354        134 VRSGAVDLIVVDSVAALVPKAEI  156 (350)
T ss_pred             HHCCCCCEEEEECCCCCCCHHHH
T ss_conf             85488418998253345768887


No 221
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=96.86  E-value=0.0066  Score=42.40  Aligned_cols=161  Identities=20%  Similarity=0.285  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99999998718774210002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r   77 IVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ  156 (461)
Q Consensus        77 iv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~  156 (461)
                      -+++++.+.|....    .....+.-|.++|-.-+||.|-+-+|..     +.+ + +|+ |.  ||             
T Consensus       153 ~L~~~i~~~l~~~~----~~~~~~iriaiiGrpNvGKStl~N~ll~-----~~r-~-ivs-~~--~G-------------  205 (438)
T PRK00093        153 DLLDAILELLPEEE----EEEEDPIKIAIIGRPNVGKSTLINALLG-----EER-V-IVS-DI--AG-------------  205 (438)
T ss_pred             HHHHHHHHHCCCCC----CCCCCCEEEEEECCCCCCHHHHHHHHHH-----HHH-H-HCC-CC--CC-------------
T ss_conf             99999985488554----3445560599955888655678887654-----333-2-047-99--98-------------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHH--HHHHHHHHHHHHCCCCCCCCCCCHHCC---HH
Q ss_conf             7422233210368999999999974158869983344222---112--468999999851385110003101112---25
Q gi|254780711|r  157 VDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNH---IND--SLMQEISEIKSLTNPHEILLVADALTG---QD  228 (461)
Q Consensus       157 v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~---~d~--~lm~El~~i~~~~~p~e~~lV~da~~G---q~  228 (461)
                             .-.|++.+.      +..++..+.+|||||-..   .++  +.+.-.+.+...-..|-++||+||.-|   ||
T Consensus       206 -------tTrD~i~~~------~~~~~~~~~~iDTaGirkk~k~~~~iE~~s~~~t~~~i~~~dvvilviDa~~~~~~qD  272 (438)
T PRK00093        206 -------TTRDSIDTP------FERDGQKYTLIDTAGIRRRGKVTEGIEKYSVIRTLKAIERADVVLLVIDATEGITEQD  272 (438)
T ss_pred             -------CCCCCEEEE------EEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHH
T ss_conf             -------511232679------9989967999989898765642137889999999999864466999997665884888


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCH---------HHHHHHHHCCCHHHEECCCC
Q ss_conf             688889887635844077641157663303---------67778884787302615867
Q gi|254780711|r  229 AVHLARNFDKIVDLTGIILTRMDGDGRGGA---------ALSMRTVTGKPIKAIGTGEK  278 (461)
Q Consensus       229 a~~~a~~F~~~~~i~giIlTKlD~~akgG~---------als~~~~~~~PI~fig~GE~  278 (461)
                       ..+|....+.=---=+++.|.|--.+...         .-.......+||.|++.=++
T Consensus       273 -~~i~~~i~~~gk~~ii~vNKwDLv~~~~~~~~~~~~~i~~~l~~~~~~pIvfiSA~~g  330 (438)
T PRK00093        273 -LRIAGLALEAGRALVIVVNKWDLVEKDSKTMEEVKEELRRRLPFLDFAPIVFISALTG  330 (438)
T ss_pred             -HHHHHHHHHCCCCEEEEEECHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf             -9999999981996699997022256638999999999997561258987799851477


No 222
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86  E-value=0.041  Score=36.32  Aligned_cols=217  Identities=18%  Similarity=0.189  Sum_probs=107.5

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf             884189962344333468899999999861489-507820542210047799998510347422233210-368999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKK-KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA  175 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~-kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a  175 (461)
                      .-++.+||+|+.|+||||++-=||+.+--.++. .--+-.|+..+     ++...+ .-.++|+.....+ .-++-+++-
T Consensus        35 ri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~-----~i~~g~-~~~~DviEiDAAS~~gVddiReL  108 (775)
T PRK07764         35 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCV-----ALAPGG-PGSLDVVEIDAASHGGVDDAREL  108 (775)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-----HHHCCC-CCCCCEEEECCCCCCCHHHHHHH
T ss_conf             976337623788878889999999996689999989888876378-----886389-88886687315655688999999


Q ss_pred             HH---HHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHHHHHHHHHCC---------
Q ss_conf             99---997-4158869983344222112468999999851385110003101112-256888898876358---------
Q gi|254780711|r  176 TQ---SAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHLARNFDKIVD---------  241 (461)
Q Consensus       176 ~~---~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~a~~F~~~~~---------  241 (461)
                      ++   |+- ...|-|.|||-+-++...  -++-|-|+.+.= |.+++|++ ++|- +....++..=.+.++         
T Consensus       109 ~e~~~y~P~~~ryKVyIIDEaHmls~~--afNALLKtLEEP-P~hvvFIl-aTTep~kip~TI~SRcq~f~Fr~i~~~~~  184 (775)
T PRK07764        109 RERAFFAPAQSRYRIFIIDEAHMVTTA--GFNALLKIVEEP-PEHLIFIF-ATTEPEKVIGTIRSRTHHYPFRLVPPGTM  184 (775)
T ss_pred             HHHCCCCCCCCCEEEEEEECHHHHCHH--HHHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHCCCCCCCCCCHHHH
T ss_conf             985476876786359998535440799--999998862278-64627999-54873547167764102345266999999


Q ss_pred             --------------CCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf             --------------440----77641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r  242 --------------LTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL  303 (461)
Q Consensus       242 --------------i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l  303 (461)
                                    ++-    +|.-.-||+-|  -+||+...   =|.|.|.| +++       ..-+-.|||+-|..-|
T Consensus       185 ~~~l~~i~~~E~i~~~~~al~li~r~~~Gs~R--DalS~ldQ---l~a~~~~~-~v~-------~~~a~~llG~~~~~~l  251 (775)
T PRK07764        185 RPYLERICAQEGVVVDDAVLPLVIRAGGGSPR--DTLSVLDQ---LLAGAGDD-GVT-------YERAVALLGVTDVALI  251 (775)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHCCCCC-CEE-------HHHHHHHHCCCCHHHH
T ss_conf             99999999983998798999999998289667--68999999---98404888-410-------9999998588858999


Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHH
Q ss_conf             99874211267899--88865310463799999999
Q gi|254780711|r  304 VEKAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQF  337 (461)
Q Consensus       304 ~e~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql  337 (461)
                      .+-+....+.+-+.  ....++...-+|.+-|.+-|
T Consensus       252 ~~~~~al~~~d~~~~~~~v~~~~~~G~d~~rf~~dL  287 (775)
T PRK07764        252 DDAVDALAAGDGAALFGVVDRVIEAGHDPRRFAEDL  287 (775)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             999999983789999999999998287889999999


No 223
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=96.84  E-value=0.063  Score=34.92  Aligned_cols=215  Identities=18%  Similarity=0.206  Sum_probs=94.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCCHHHHHH
Q ss_conf             8841899623443334688999999998614895-0782054221004779999851034742223----3210368999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEV----IPEQSPEKIA  172 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~i~  172 (461)
                      .-.+.++|.|+.|+||||++-=||+-+--..+.. --+..|..-        +...+---++++..    ..+-|-+.-.
T Consensus        36 rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C--------~~i~~g~~~d~~EiDaAs~~~vdd~rel  107 (717)
T PRK08853         36 RLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATC--------KEIDEGRFVDLLEIDAASRTKVEDTREL  107 (717)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCH--------HHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf             97405761088988898999999998678999999978887026--------7674478775245405656788999999


Q ss_pred             HHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH---------
Q ss_conf             99999997-415886998334422211246899999985138511000310111225-----688889887---------
Q gi|254780711|r  173 IRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD---------  237 (461)
Q Consensus       173 ~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~---------  237 (461)
                      .+-+.|+- ...|-|.|||-.-.+....  +.-|-+..+.- |.++.|++ |||--+     .+.-+..|+         
T Consensus       108 ~~~~~y~p~~~~yKvyiiDEvHmls~~a--fnAlLKtlEEP-P~hv~Fil-aTT~~~kip~TilSRc~~f~l~~~~~~~i  183 (717)
T PRK08853        108 LDNVQYKPARGRFKVYLIDEVHMLSRHS--FNALLKTLEEP-PEYVKFLL-ATTDPQKLPVTILSRCLQFHLKPISVDQI  183 (717)
T ss_pred             HHHCCCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCCCHHHH
T ss_conf             9855548877854799983054438999--99998760378-75648998-43873437388987654423268999999


Q ss_pred             ----------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf             ----------6358440----77641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r  238 ----------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL  303 (461)
Q Consensus       238 ----------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l  303 (461)
                                +.+.++.    +|-..-||+-|  -|||+...   -|.| |.|.--        +.-+..+||.-|-..+
T Consensus       184 ~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~R--dalsl~dq---aia~-~~g~~~--------~~~v~~mlg~~d~~~~  249 (717)
T PRK08853        184 HQQLDFVLDKEQVSAEARALGLIAHAADGSMR--DALSLTDQ---AIAL-GNGQVT--------TDIVSHMLGTLDTDQA  249 (717)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHH-CCCCCC--------HHHHHHHHCCCCHHHH
T ss_conf             99999999975987699999999997688377--88889999---9996-589716--------9999998588877899


Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHH
Q ss_conf             99874211267899--888653104637999999999
Q gi|254780711|r  304 VEKAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQFR  338 (461)
Q Consensus       304 ~e~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql~  338 (461)
                      ++-.....+.+...  .....+.....++...+..+-
T Consensus       250 ~~ll~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~  286 (717)
T PRK08853        250 IHLLEAISSKQPQTAMDCIQQLADNGVEWDGLLQQLA  286 (717)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999955899999999999986889999999999


No 224
>PRK04195 replication factor C large subunit; Provisional
Probab=96.84  E-value=0.043  Score=36.17  Aligned_cols=87  Identities=17%  Similarity=0.202  Sum_probs=47.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             189962344333468899999999861489507-8205422100477999985103474222332103689999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-MASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~-lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      ..++|+||.|+||||++-=||+.+    |..|. +=|.|......+++.-.-+...+ +++                   
T Consensus        41 k~lLL~GPpGvGKTT~a~~lAk~~----g~~viElNASD~R~~~~I~~~i~~~~~~~-sl~-------------------   96 (403)
T PRK04195         41 KALLLYGPPGVGKTSLAHALANDY----GWEVIELNASDQRTKDVIERVAGEASTSG-SLF-------------------   96 (403)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH----CCCEEEECCCCCCCHHHHHHHHHHHHHCC-CCC-------------------
T ss_conf             469988939987999999999984----99859977101147899999999876068-877-------------------


Q ss_pred             HHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHC
Q ss_conf             741588699833442221--124689999998513
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLT  212 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~  212 (461)
                       ....-+||+|-+--++.  |.....+|.++.+..
T Consensus        97 -~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s  130 (403)
T PRK04195         97 -GAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA  130 (403)
T ss_pred             -CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             -8873499963434457244479999999998548


No 225
>cd01898 Obg Obg subfamily.  The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation.  Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans.  The E. coli homolog, ObgE is believed to function in ribosomal biogenesis.  Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.84  E-value=0.0068  Score=42.29  Aligned_cols=144  Identities=25%  Similarity=0.354  Sum_probs=75.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      -|.++|..-|||+|-+-.|.       +.++.+ + |.  |+.     |.-...++  +   .               ..
T Consensus         2 ~VAiiG~pNvGKSTLlN~l~-------~~~~~V-~-~~--pgT-----T~~~~~g~--i---~---------------~~   45 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAIS-------NAKPKI-A-DY--PFT-----TLVPNLGV--V---R---------------VD   45 (170)
T ss_pred             CEEEECCCCCCHHHHHHHHH-------CCCCEE-E-CC--CCC-----CCCCEEEE--E---E---------------EC
T ss_conf             58998999998999999996-------787603-2-56--665-----23744779--9---9---------------36


Q ss_pred             CCCCEEEEECCCCC---CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC-----C----CCEEEEE
Q ss_conf             15886998334422---2112468999999851385110003101112256888898876358-----4----4077641
Q gi|254780711|r  182 GGYDAVILDTAGRN---HINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD-----L----TGIILTR  249 (461)
Q Consensus       182 ~~~D~iiiDTaGR~---~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~-----i----~giIlTK  249 (461)
                      .+..++++||+|=.   |.+.++-.+.  +..+-+.+-+++|+|+.-..+...+.+...+.+.     +    .=++++|
T Consensus        46 ~~~~i~~~DtpGi~~~~~~~~~l~~~~--l~~i~~advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK  123 (170)
T cd01898          46 DGRSFVVADIPGLIEGASEGKGLGHRF--LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNK  123 (170)
T ss_pred             CCCEEEEECCCCCCCCCCCCCCHHHHH--HHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEH
T ss_conf             985699964886444554662248999--861334561799998998789899999999999982744403865067762


Q ss_pred             CCCCCCCC--HHHH--HHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf             15766330--3677--7888478730261--586723210
Q gi|254780711|r  250 MDGDGRGG--AALS--MRTVTGKPIKAIG--TGEKINDLE  283 (461)
Q Consensus       250 lD~~akgG--~als--~~~~~~~PI~fig--~GE~~~dle  283 (461)
                      .|--.+--  ..+.  .....+.||.||+  +|+.++.|.
T Consensus       124 ~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~gi~~L~  163 (170)
T cd01898         124 IDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELL  163 (170)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf             0242835638999999985699958999754797999999


No 226
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.83  E-value=0.003  Score=44.96  Aligned_cols=144  Identities=22%  Similarity=0.300  Sum_probs=73.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      .|.++|-.-+||+|-.-+|..       .++ .|+ |.  ||.             ..       |+..      ..+..
T Consensus         1 tVaIvG~PNvGKSTLlN~L~g-------~~~-~Vs-~~--pGt-------------Tr-------d~~~------~~~~~   43 (188)
T pfam02421         1 TIALVGNPNVGKTTLFNALTG-------ARQ-HVG-NW--PGV-------------TV-------EKKE------GTFKY   43 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHC-------CCC-EEE-CC--CCC-------------CC-------CEEE------EEEEE
T ss_conf             989988999899999999959-------996-563-89--997-------------23-------3357------68752


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHH--HHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCCH
Q ss_conf             1588699833442221124689999--99851385110003101112256888898876-35844077641157663303
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEIS--EIKSLTNPHEILLVADALTGQDAVHLARNFDK-IVDLTGIILTRMDGDGRGGA  258 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~--~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~-~~~i~giIlTKlD~~akgG~  258 (461)
                      .+..++++||+|-+..+....+|.-  +....-.+|-+++|+||..-......+....+ ..+ .=++++|.|--.+-..
T Consensus        44 ~~~~~~lvDTpGi~~~~~~~~~e~v~~~~~~~~~aDlvl~vvDa~~~er~l~l~~~l~~~~~p-~IvVlNK~Dl~~~~~~  122 (188)
T pfam02421        44 KGYEIEIVDLPGTYSLSPYSEEEKVARDYLLEEKPDVIINVVDATNLERNLYLTLQLLELGIP-VVVALNMMDEAEKKGI  122 (188)
T ss_pred             CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCHHCCCCCC
T ss_conf             516799996888501465327899999998623687369997676245448999999976998-8999617020100365


Q ss_pred             HH---HHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf             67---77888478730261--586723210
Q gi|254780711|r  259 AL---SMRTVTGKPIKAIG--TGEKINDLE  283 (461)
Q Consensus       259 al---s~~~~~~~PI~fig--~GE~~~dle  283 (461)
                      ..   ......|.|+.+|+  +|+.+++|.
T Consensus       123 ~~~~~~l~~~lg~~vi~ISA~~g~Gi~eL~  152 (188)
T pfam02421       123 KIDIKKLSELLGVPVVPTSARKGEGIDELK  152 (188)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCHHHHH
T ss_conf             203999998739968999931699999999


No 227
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277   This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=96.83  E-value=0.029  Score=37.49  Aligned_cols=138  Identities=17%  Similarity=0.202  Sum_probs=78.6

Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC---CCC-EEEEC
Q ss_conf             1112--69989999999999999871877421000258841899623443334688999999998614---895-07820
Q gi|254780711|r   63 KILR--SIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLK---KKK-ILMAS  136 (461)
Q Consensus        63 ~~~~--~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~---~~k-V~lv~  136 (461)
                      .+|.  .+--++.=++-+...|..+|.|        ...|.-|++-|.+|+|||.++-++...++..-   +.. |.++.
T Consensus        12 Y~Pden~i~hRdeqI~~l~~~L~~~l~P--------G~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~   83 (383)
T TIGR02928        12 YVPDENRIVHRDEQIEELAKALRPILRP--------GSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVY   83 (383)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             7027424668678999999998875067--------48987258878889878899999999999986226997158999


Q ss_pred             CCCCCCHHHHH-HHHHHHCC-----CCCCCCCCCCCHHHHHHHHHHHHHHH-CCCC--EEEEECCCCC--CCHHH-----
Q ss_conf             54221004779-99985103-----47422233210368999999999974-1588--6998334422--21124-----
Q gi|254780711|r  137 LDVHRPAAQEQ-LRYLGEQI-----QVDTLEVIPEQSPEKIAIRATQSARD-GGYD--AVILDTAGRN--HINDS-----  200 (461)
Q Consensus       137 ~Dt~R~aA~eQ-L~~~a~~~-----~v~~~~~~~~~dp~~i~~~a~~~a~~-~~~D--~iiiDTaGR~--~~d~~-----  200 (461)
                      .+....-..-| +..+++++     +..+  ...| =|.+=+|+-+-..-. +.++  +|++|=-=++  ..+++     
T Consensus        84 ~NC~~~~T~y~~~~~L~~~ln~~~~~~~v--P~tG-~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~~d~PAyS~  160 (383)
T TIGR02928        84 INCQILDTSYQVLVELANQLNRRGSGEEV--PTTG-LSTSEVFRELYKELNRERGDSLIIVLDEIDKLVRKDDDDPAYSK  160 (383)
T ss_pred             ECCCCCCCHHHHHHHHHHHHCCCCCCCCC--CCCC-CCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCHHHHH
T ss_conf             77854684699999999985157788889--8877-87899999999998320188799986231022158888807878


Q ss_pred             HHHHHHHHHHH
Q ss_conf             68999999851
Q gi|254780711|r  201 LMQEISEIKSL  211 (461)
Q Consensus       201 lm~El~~i~~~  211 (461)
                      ++=+|.+....
T Consensus       161 ~LY~L~Ra~~~  171 (383)
T TIGR02928       161 LLYQLSRAREN  171 (383)
T ss_pred             HHHHHHHHHHC
T ss_conf             85343310003


No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=96.82  E-value=0.0038  Score=44.23  Aligned_cols=127  Identities=20%  Similarity=0.147  Sum_probs=70.5

Q ss_pred             CCCCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             58841-89962344333468899999999861489507820542210047799998510347422233210368999999
Q gi|254780711|r   97 APSPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA  175 (461)
Q Consensus        97 ~~~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a  175 (461)
                      ..+|+ .|.++|-=-+||||.++.|...+... +..-.-...      ..|++..--+ -|+.+-...            
T Consensus         8 ~~kp~ini~~~GHVD~GKSTL~g~Lt~~~~~~-~~~~~~~~~------~~D~~~eEr~-rGiTid~~~------------   67 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKK-GGGEAKAYD------QIDNAPEEKA-RGITINTSH------------   67 (396)
T ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCCHH------HHCCCHHHHC-CCEEEEEEE------------
T ss_conf             89983499999426885898999986145452-464312212------2116656743-773798569------------


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---H--HHHHHHHHHHHHCCCCC-EE-EE
Q ss_conf             999974158869983344222112468999999851385110003101112---2--56888898876358440-77-64
Q gi|254780711|r  176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---Q--DAVHLARNFDKIVDLTG-II-LT  248 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q--~a~~~a~~F~~~~~i~g-iI-lT  248 (461)
                       .++...++.+-+||++|--..=.++      |..+.+.|-.+||+||..|   |  +....++    .+++.- +| +|
T Consensus        68 -~~fet~~~~~~~iD~PGHe~fiknM------I~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~----~lgv~~~iV~vn  136 (396)
T PRK12735         68 -VEYETANRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVSAADGPMPQTREHILLAR----QVGVPYIVVFLN  136 (396)
T ss_pred             -EEEECCCEEEEEEECCCHHHHHHHH------HHCCCCCCEEEEEEECCCCCCHHHHHHHHHHH----HHCCCEEEEEEE
T ss_conf             -9997398059998368668877666------41004256799999868787531699999999----839985899998


Q ss_pred             ECCCCC
Q ss_conf             115766
Q gi|254780711|r  249 RMDGDG  254 (461)
Q Consensus       249 KlD~~a  254 (461)
                      |+|--.
T Consensus       137 K~D~v~  142 (396)
T PRK12735        137 KCDMVD  142 (396)
T ss_pred             CCCCCC
T ss_conf             758888


No 229
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.81  E-value=0.022  Score=38.35  Aligned_cols=53  Identities=21%  Similarity=0.284  Sum_probs=33.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHH------CCCCE------EEECCCCCCCHHHHHHHHHHH
Q ss_conf             189962344333468899999999861------48950------782054221004779999851
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTL------KKKKI------LMASLDVHRPAAQEQLRYLGE  153 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~------~~~kV------~lv~~Dt~R~aA~eQL~~~a~  153 (461)
                      +-.++||-.|+|||.-+--||......      .++++      .++|.-.||----|-|+.+-+
T Consensus       201 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~  265 (823)
T CHL00095        201 NNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMD  265 (823)
T ss_pred             CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             88502379998799999999997608899868759936884288775334222679999999999


No 230
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.81  E-value=0.025  Score=38.01  Aligned_cols=102  Identities=22%  Similarity=0.273  Sum_probs=61.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             78989999999999999985246969999999999999830311126998999999999999987187742100025884
Q gi|254780711|r   21 SLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSP  100 (461)
Q Consensus        21 ~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p  100 (461)
                      .+++++++..    +  -|.-++++.-|.++...+..-+.-.         ..-...+..++...|+      ..+...|
T Consensus        24 ~lt~~e~~~~----~--~ln~~~~l~eV~~iylpL~~l~~~~---------~~~~~~~~~~~~~~l~------~~~~~~p   82 (283)
T COG1072          24 TLTEEELKRL----R--GLNEPISLDEVEDIYLPLSRLLQLY---------VEARERLFAELLRFLG------TNNQQRP   82 (283)
T ss_pred             CCCHHHHHHH----C--CCCCCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHC------CCCCCCC
T ss_conf             2678999886----0--6788977999999999999999999---------9889988999999834------6688888


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCH
Q ss_conf             189962344333468899999999861489-5078205422100
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKK-KILMASLDVHRPA  143 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~-kV~lv~~Dt~R~a  143 (461)
                      .||-++|.-|+||.||+..|+.-+...... +|-++++|-|-..
T Consensus        83 fIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~  126 (283)
T COG1072          83 FIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYP  126 (283)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf             79996057665577899999999963889873378714545467


No 231
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.81  E-value=0.0072  Score=42.11  Aligned_cols=115  Identities=17%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      -|+ ++|.|+.|+||||.+-=||..+.    ....-.+|                           ..+-++-.++.++.
T Consensus        37 ~~s-~Il~GPPG~GKTTlA~iiA~~~~----~~f~~lnA---------------------------~~~gv~dir~ii~~   84 (417)
T PRK13342         37 LSS-MILWGPPGTGKTTLARIIAGATD----AEFEALSA---------------------------VTSGVKDLREVIEE   84 (417)
T ss_pred             CCE-EEEECCCCCCHHHHHHHHHHHHC----CCEEEEEC---------------------------CCCCHHHHHHHHHH
T ss_conf             975-99889699989999999999868----98899614---------------------------10388999999999


Q ss_pred             HHHC---CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             9741---58869983344222112468999999851385110003101112256888898876358440776411576
Q gi|254780711|r  179 ARDG---GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGD  253 (461)
Q Consensus       179 a~~~---~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~  253 (461)
                      ++..   ..-+++||-.-|......     ..+...+....++ .+-|||-.-...+-.+--...-+  +-+.+|...
T Consensus        85 a~~~~~~~~tilfiDEIHRfnK~QQ-----D~LLp~vE~g~ii-LIgATTENP~f~in~aLlSRc~v--f~l~~L~~~  154 (417)
T PRK13342         85 AKQSRLGRRTILFIDEIHRFNKAQQ-----DALLPHVEDGTIT-LIGATTENPSFEVNPALLSRAQV--FELKPLSEE  154 (417)
T ss_pred             HHHHHCCCCEEEEEECHHHCCHHHH-----HHHHHHHHCCCEE-EEEECCCCCHHHCCHHHHHHHHH--EECCCCCHH
T ss_conf             8863148965999978200588999-----9998751126569-99741579225348989856570--020589999


No 232
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.81  E-value=0.0016  Score=47.15  Aligned_cols=36  Identities=36%  Similarity=0.473  Sum_probs=31.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             899623443334688999999998614895078205422
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      +|.++|..||||||++-+|+..+.   +.+|.+++.|-|
T Consensus         1 iIgI~G~sgsGKTT~a~~L~~~l~---~~~v~~i~~D~y   36 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG---NPKVVIISQDSY   36 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC---CCCEEEEECCCC
T ss_conf             989889998859999999999809---998589978888


No 233
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.81  E-value=0.059  Score=35.13  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             996234433346889999999986
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKT  126 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~  126 (461)
                      .++||-.|||||.-+=-||.....
T Consensus       211 PiLVGepGVGKTAIvEGLA~rI~~  234 (852)
T TIGR03345       211 PILTGEAGVGKTAVVEGLALRIAA  234 (852)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             746579998799999999999976


No 234
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.80  E-value=0.047  Score=35.90  Aligned_cols=104  Identities=19%  Similarity=0.223  Sum_probs=55.6

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----CCCCEEEECCC-CCCCHHHHHHHHHHH
Q ss_conf             999987187742100025884189962344333468899999999861-----48950782054-221004779999851
Q gi|254780711|r   80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTL-----KKKKILMASLD-VHRPAAQEQLRYLGE  153 (461)
Q Consensus        80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~-----~~~kV~lv~~D-t~R~aA~eQL~~~a~  153 (461)
                      .+|-++|++.-.       .-.|..++|..|+|||+-|-.||......     .+.+|+.+.+. .|++   +.|.++++
T Consensus         6 ~~lD~~L~GGi~-------~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~---~Rl~qia~   75 (235)
T cd01123           6 KALDELLGGGIE-------TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP---ERLVQIAE   75 (235)
T ss_pred             HHHHHHCCCCCC-------CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH---HHHHHHHH
T ss_conf             789965079964-------78799999999984999999999998424753678962999953677588---99999999


Q ss_pred             CCC---------CCCCCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf             034---------742223321036899999999997-4158869983344
Q gi|254780711|r  154 QIQ---------VDTLEVIPEQSPEKIAIRATQSAR-DGGYDAVILDTAG  193 (461)
Q Consensus       154 ~~~---------v~~~~~~~~~dp~~i~~~a~~~a~-~~~~D~iiiDTaG  193 (461)
                      ..+         +-++...+..+-..+.......+. ..+..+|+||..-
T Consensus        76 ~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~v~LvVIDSia  125 (235)
T cd01123          76 RFGLDPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVT  125 (235)
T ss_pred             HHCCCHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECH
T ss_conf             71347245422547963799999999999999987303772399996104


No 235
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.79  E-value=0.052  Score=35.55  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=11.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHH
Q ss_conf             9623443334688999999998
Q gi|254780711|r  104 MLVGLQGSGKTTTTAKIAYHLK  125 (461)
Q Consensus       104 llvGl~GsGKTTT~aKLA~~~~  125 (461)
                      ++||-.|+|||.-+-=||....
T Consensus       195 vLiGEpGVGKTAIvEGLA~rIv  216 (786)
T COG0542         195 VLVGEPGVGKTAIVEGLAQRIV  216 (786)
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
T ss_conf             4766898889999989999974


No 236
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=96.79  E-value=0.069  Score=34.62  Aligned_cols=309  Identities=14%  Similarity=0.133  Sum_probs=142.1

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE--EECCCCCCCHHHHHHHHHHHCCCCCCCCCC----CCCHHHH
Q ss_conf             5884189962344333468899999999861489507--820542210047799998510347422233----2103689
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL--MASLDVHRPAAQEQLRYLGEQIQVDTLEVI----PEQSPEK  170 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~--lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~----~~~dp~~  170 (461)
                      .+-|+.+||+|+.|+||||++--+|..+--. +....  .-.|+..+.        .....-.+++...    .+-|.+.
T Consensus        35 ~ri~HAyLF~GprGtGKts~Ari~AkaLnC~-~~~~~~pC~~C~~C~~--------i~~g~~~DviEiDaasn~gVd~IR  105 (563)
T PRK06674         35 EKVSHAYLFSGPRGTGKTSIAKVFAKAVNCE-HAPVAEPCNECPSCLG--------ITNGSISDVLEIDAASNNGVDEIR  105 (563)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHH--------HHCCCCCCEEEECCCCCCCHHHHH
T ss_conf             9965034312899868999999999985799-9999887766878999--------855899877985255557879999


Q ss_pred             HHHHHHHHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHH----HHHHH--------
Q ss_conf             999999999-74158869983344222112468999999851385110003101112256888----89887--------
Q gi|254780711|r  171 IAIRATQSA-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHL----ARNFD--------  237 (461)
Q Consensus       171 i~~~a~~~a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~----a~~F~--------  237 (461)
                      -..+-+.++ ....|-|+|||-+-++..+.  ..-|-+..+.- |..++|++-.+--+.-..+    .+.|+        
T Consensus       106 ~i~~~v~~~P~~~~yKV~IIDeah~Lt~~A--~NALLKtLEEP-P~~viFILaTtep~ki~~TI~SRCQrf~F~ri~~~~  182 (563)
T PRK06674        106 DIRDKVKFAPSAVEYKVYIIDEVHMLSIGA--FNALLKTLEEP-PGHVIFILATTEPHKIPPTIISRCQRFDFRRISVND  182 (563)
T ss_pred             HHHHHHCCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHHHCC-CCCEEEEEECCCHHHCCHHHHHHHEEEECCCCCHHH
T ss_conf             999982648867873799985456379999--99999986388-756499996599475847887331031278899999


Q ss_pred             -----------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf             -----------635844----07764115766330367778884787302615867232100136889987735862788
Q gi|254780711|r  238 -----------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVS  302 (461)
Q Consensus       238 -----------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~  302 (461)
                                 +.+.++    .+|..+-||+-|  -|||+-...   |.|-  +++++.       .-+..+||.-|-..
T Consensus       183 i~~rL~~I~~~E~i~~~~~aL~~Ia~~a~GsmR--DAlsiLdQ~---~s~~--~~~i~~-------~~v~~~lG~~~~~~  248 (563)
T PRK06674        183 IVERLSTVVTNEGTQVEDEALQIIARAADGGMR--DALSLLDQA---ISFS--DERVTT-------EDVLAVTGAVSQQY  248 (563)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHHH---HHHC--CCCCCH-------HHHHHHHCCCCHHH
T ss_conf             999999999984999878899999997699788--999999999---9715--997689-------99999868998899


Q ss_pred             HHHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHH----HHHHH--HCC-CCHHHHHHHHHCCCCCHHHHHHCCCCHHHH
Q ss_conf             9998742112678--99888653104637999999----99998--511-488999998731344234323111678888
Q gi|254780711|r  303 LVEKAARNLNEKQ--AALTAKKIAKGKFDLEDLAE----QFRQT--QKI-GGIGSILRMLPGMPSLKQNIMPSSFDDKTI  373 (461)
Q Consensus       303 l~e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~----Ql~~i--~km-G~l~~il~miPG~~~~~~~~~~~~~~e~~l  373 (461)
                      +.+-+....+.+.  +-.+..++...-.+..-|.+    .++.+  .|. +.+..++.....-..+  ......+....+
T Consensus       249 ~~~l~~~i~~~d~~~~l~~~~~~~~~G~d~~~~~~dl~~~~r~~l~~k~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l  326 (563)
T PRK06674        249 LGNLVECIRENDVSRALRIIDEMMGQGKDPVRLMEDFIYYYRDMLLYQTAPQLEHMLERVMVDEQF--RMLSEEMPPEVI  326 (563)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHHHHCCCHHHH
T ss_conf             999999998489999999999999879999999999999999988742379567654311154999--999852899999


Q ss_pred             HHHHHHHHCCCHHHHC--CCCCCCHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             8999997458987860--841133578999723---26679899999999999999999986068
Q gi|254780711|r  374 NHHIAIIASMTKEERA--NPSIIKHSRKKRIAA---GSGTNAAKINKLLKLHRQVAEMMHSTQGL  433 (461)
Q Consensus       374 k~~~aII~SMT~~Er~--~P~ll~~SR~~RIA~---GSG~~v~eVn~Llk~f~~m~kmmk~~~~~  433 (461)
                      -++..+++.--.+=|.  +|.++=.-=..|++.   .+..+..++..|+++-.+..+-++..+..
T Consensus       327 ~~~i~~l~~~~~~~r~s~~~~~~lE~~~vkl~~~~~~~~~~~~~~~~l~~~i~~le~~~~~~~~~  391 (563)
T PRK06674        327 YEIIHTLSKSQQEMKWTNHPRIFLEVVMVQLCQQFMMQANGADRLQAIMNRMQQLEKELERVKKN  391 (563)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999996147882188999999995303588777510678999999999999874046


No 237
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=96.79  E-value=0.0074  Score=42.01  Aligned_cols=37  Identities=38%  Similarity=0.531  Sum_probs=31.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             99623443334688999999998614895078205422
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      +.--|--|+|||||.|-|+.-+.. .|+||.+|-+|.-
T Consensus         6 VvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~DiG   42 (272)
T COG2894           6 VVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDFDIG   42 (272)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHH-CCCEEEEEECCCC
T ss_conf             994488876743106778999997-3985999966767


No 238
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=96.79  E-value=0.0029  Score=45.16  Aligned_cols=46  Identities=17%  Similarity=0.216  Sum_probs=38.0

Q ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCCC
Q ss_conf             2588418996234433346889999999986148-950782054221
Q gi|254780711|r   96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKILMASLDVHR  141 (461)
Q Consensus        96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~lv~~Dt~R  141 (461)
                      .++++.+|-++|+.||||||.+..|+..+..... ..+.+++.|-|-
T Consensus        30 ~~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH   76 (230)
T PRK09270         30 EPQRRTVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFH   76 (230)
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             99971899998999889999999999998623799857997365334


No 239
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252   This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=96.79  E-value=0.0019  Score=46.51  Aligned_cols=31  Identities=42%  Similarity=0.599  Sum_probs=22.2

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             02588418996234433346889999999986
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKT  126 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~  126 (461)
                      .++.-|.-|+|-||.|+||| |+|.||.--.|
T Consensus       171 ~aSPfPQHiiLYGPPGVGKT-TaARl~LEe~K  201 (616)
T TIGR02903       171 LASPFPQHIILYGPPGVGKT-TAARLALEEAK  201 (616)
T ss_pred             HCCCCCCCEEEECCCCCCHH-HHHHHHHHHCC
T ss_conf             31888660785573388478-99999876213


No 240
>PRK13976 thymidylate kinase; Provisional
Probab=96.78  E-value=0.025  Score=37.92  Aligned_cols=114  Identities=23%  Similarity=0.336  Sum_probs=55.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCHHH---HHHHHHHHC-CCCCCCC--CCCCCHHHHHHHHH
Q ss_conf             9962344333468899999999861-489507820542210047---799998510-3474222--33210368999999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTL-KKKKILMASLDVHRPAAQ---EQLRYLGEQ-IQVDTLE--VIPEQSPEKIAIRA  175 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~-~~~kV~lv~~Dt~R~aA~---eQL~~~a~~-~~v~~~~--~~~~~dp~~i~~~a  175 (461)
                      |.|=|+-||||||-+..|+.||+.. ++.+|.+    |+-||.-   +.++.+-.. -+++-..  .-...|-..-+.+-
T Consensus         3 IvfEGiDGsGKsTq~~~L~~~L~~~~~~~~~~~----trEPggt~~ge~IR~~ll~~~~~~~~te~lLf~A~R~eh~~~~   78 (202)
T PRK13976          3 ITFEGIDGSGKTTQSRLLAEYLSQIYGENNVVL----TREPGGTSFNESVRGLLLSTKNLDKLSELLLFIAMRREHFVKV   78 (202)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE----ECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999899999899999999999986069986898----3799998278999999716557996999999999999999999


Q ss_pred             HHHHHHCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             9999741588699833----------44222112468999999851385110003101
Q gi|254780711|r  176 TQSARDGGYDAVILDT----------AGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDT----------aGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                      +..+-.++ .+||.|-          .|| ..+.+.+.+|.++.....||-+++ +|-
T Consensus        79 I~PaL~~g-~~VI~DRy~~St~AYQg~~~-gl~~~~i~~l~~~~~~~~PDlt~~-Ldi  133 (202)
T PRK13976         79 ILPALTQG-KIVICDRFIDSTIAYQGYGC-GIDLKLIRDLNDLVVDIYPDITFI-LDI  133 (202)
T ss_pred             HHHHHHCC-CEEEECCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCCCCCCEEEE-EEC
T ss_conf             88888669-98997485355788732267-989999999999840789887999-837


No 241
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=96.77  E-value=0.071  Score=34.54  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=8.8

Q ss_pred             CCCCCC-CHHHHHHHHCCCCCC
Q ss_conf             084113-357899972326679
Q gi|254780711|r  389 ANPSII-KHSRKKRIAAGSGTN  409 (461)
Q Consensus       389 ~~P~ll-~~SR~~RIA~GSG~~  409 (461)
                      ..|-|| +..++++.|.--|..
T Consensus       417 a~~iLlG~~~~i~~~~~~~gl~  438 (702)
T PRK05632        417 ADCVLLGNPEEIRRVAAAQGVD  438 (702)
T ss_pred             EEEEEECCHHHHHHHHHHCCCC
T ss_conf             0599978999999999975999


No 242
>cd04160 Arfrp1 Arfrp1 subfamily.  Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif.  Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes.  It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network.  Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D.  Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.77  E-value=0.0046  Score=43.61  Aligned_cols=96  Identities=16%  Similarity=0.249  Sum_probs=49.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
                      |+++|+.||||||-+-++...+....+     ...+++-           --+|..+..                 ...+
T Consensus         2 ivilG~~~~GKTsll~~l~~~~~~~~~-----~~~~~~~-----------~Tvg~~~~~-----------------i~~~   48 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTLFSKYKG-----LPPSKIT-----------PTVGLNIGT-----------------IEVG   48 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCC-----CCCCCCC-----------CCCCEEEEE-----------------EEEC
T ss_conf             999999998888999988750367677-----7655403-----------531326899-----------------9989


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH-HHHHH
Q ss_conf             588699833442221124689999998513851100031011122568888-98876
Q gi|254780711|r  183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA-RNFDK  238 (461)
Q Consensus       183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a-~~F~~  238 (461)
                      ++.+.+.||||..     .+.++-..+- -..+-+++|+|++- .+.++.+ ..|++
T Consensus        49 ~~~l~iwD~~Gqe-----~~~~l~~~y~-~~a~~ii~VvD~sd-~~~~~~~~~~l~~   98 (167)
T cd04160          49 NARLKFWDLGGQE-----SLRSLWDKYY-AECHAIIYVIDSTD-RERFEESKSALEK   98 (167)
T ss_pred             CEEEEEEECCCCH-----HHHHHHHHHC-CCCCEEEEEEECCC-HHHHHHHHHHHHH
T ss_conf             9999999689878-----8878998742-89878999986686-7889999999999


No 243
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.75  E-value=0.015  Score=39.63  Aligned_cols=87  Identities=23%  Similarity=0.207  Sum_probs=45.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9962344333468899999999861-48950782054221004779999851034--74222332103689999999999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTL-KKKKILMASLDVHRPAAQEQLRYLGEQIQ--VDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~-~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~--v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      +++++++|+|||++..-.+.....+ ++.+++ +-+.+ |+-+.++.+.+.+..+  ..+.....+.+...      ..-
T Consensus         3 ~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~l-il~Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~   74 (144)
T cd00046           3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVL-VLAPT-RELANQVAERLKELFGEGIKVGYLIGGTSIKQ------QEK   74 (144)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHCCCCEEE-EECCH-HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH------HHH
T ss_conf             99988997179999999999999756897699-97467-99999999999997488717999961363677------898


Q ss_pred             HHCCCCEEEEECCCCCCC
Q ss_conf             741588699833442221
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHI  197 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~  197 (461)
                      ......-|+|-|.+++..
T Consensus        75 ~~~~~~~ilv~T~~~l~~   92 (144)
T cd00046          75 LLSGKTDIVVGTPGRLLD   92 (144)
T ss_pred             HHCCCCCEEECCHHHHHH
T ss_conf             745898499828899999


No 244
>PRK07667 uridine kinase; Provisional
Probab=96.75  E-value=0.0037  Score=44.35  Aligned_cols=44  Identities=25%  Similarity=0.326  Sum_probs=37.8

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             588418996234433346889999999986148950782054221
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR  141 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R  141 (461)
                      +..-.+|-+.|..||||||-+.+|+..+.. .+.+|.++..|-|=
T Consensus        11 ~~~r~iIgIaG~sgSGKTTla~~L~~~l~~-~~~~v~v~~~Dd~~   54 (190)
T PRK07667         11 KENRFILGIDGLSRSGKTTFVANLKENMKQ-EGIPFHIFHIDDHI   54 (190)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCC
T ss_conf             598699997798978899999999999866-59837999666242


No 245
>PRK08082 consensus
Probab=96.74  E-value=0.074  Score=34.37  Aligned_cols=89  Identities=22%  Similarity=0.238  Sum_probs=56.7

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC-HHH--HHHHH
Q ss_conf             4189962344333468899999999861489507820542210047799--998510347422233210-368--99999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ-SPE--KIAIR  174 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~-dp~--~i~~~  174 (461)
                      -..|.+.|-.|.|||+.+.-+|.....+.+++|++.+..--    .+||  +.+|...+|+......+. ...  .-+..
T Consensus       203 g~LiviaaRPsmGKTa~alnia~~~a~~~~~~V~~fSlEM~----~~~l~~R~la~~s~i~~~~i~~g~l~~~e~~~i~~  278 (453)
T PRK08082        203 NDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEMG----ADQLVMRMLCAEGNIDAQRLRTGSLTSDDWGKLTM  278 (453)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf             85799986788757899999999999855994899731389----89999999971558886677518999999999999


Q ss_pred             HHHHHHHCCCCEEEEECCCC
Q ss_conf             99999741588699833442
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGR  194 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR  194 (461)
                      ++...  .+..+.|-||+|.
T Consensus       279 a~~~l--~~~~l~idd~~~~  296 (453)
T PRK08082        279 AMGSL--SNAGIYIDDTPGI  296 (453)
T ss_pred             HHHHH--CCCCEEEECCCCC
T ss_conf             99985--0697389789999


No 246
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223   This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=96.73  E-value=0.0014  Score=47.52  Aligned_cols=135  Identities=27%  Similarity=0.409  Sum_probs=73.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC------------------------------
Q ss_conf             34433346889999999986148950782054221004779999851034------------------------------
Q gi|254780711|r  107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ------------------------------  156 (461)
Q Consensus       107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~------------------------------  156 (461)
                      |==|+|||||+|=|+.-|... |+||.+|=+|+-       ||-+==.+|                              
T Consensus         9 GKGGVGKTTtTANlG~aLA~l-G~kVvliD~DiG-------LRNLD~~lGLEnRivYt~vDVveG~C~l~qALikDKr~~   80 (272)
T TIGR01968         9 GKGGVGKTTTTANLGTALARL-GKKVVLIDADIG-------LRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLE   80 (272)
T ss_pred             CCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCC-------CHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf             788977358989999999961-982899954757-------034577742310354535543248421100100126752


Q ss_pred             -CCCCCCCCCCHHH----HHHHHHHHHHHHC-CCCEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCC--------
Q ss_conf             -7422233210368----9999999999741-5886998334-42221124689999998513851100031--------
Q gi|254780711|r  157 -VDTLEVIPEQSPE----KIAIRATQSARDG-GYDAVILDTA-GRNHINDSLMQEISEIKSLTNPHEILLVA--------  221 (461)
Q Consensus       157 -v~~~~~~~~~dp~----~i~~~a~~~a~~~-~~D~iiiDTa-GR~~~d~~lm~El~~i~~~~~p~e~~lV~--------  221 (461)
                       .-+.+.-...|--    +-.+.=++..+.+ +||+||||.+ |   ++       +-+..++-|-+--+|+        
T Consensus        81 NL~LLpAsQ~rdK~~~~~E~~~~lv~~Lk~~~~FDYviIDcPAG---IE-------~GF~nAv~~Ad~AiVVttPEvsav  150 (272)
T TIGR01968        81 NLYLLPASQTRDKDAVTPEQMKKLVNELKEEEHFDYVIIDCPAG---IE-------SGFRNAVAPADEAIVVTTPEVSAV  150 (272)
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC---HH-------HHHHHHHHHCCEEEEEECCCCCCH
T ss_conf             35663653023613469778999999985437930799737877---43-------568998752683589877874510


Q ss_pred             -CH--HCCHHHHHHHHHHHHHCCC------CCEEEEECCC-CCCCCHHHHHHHH
Q ss_conf             -01--1122568888988763584------4077641157-6633036777888
Q gi|254780711|r  222 -DA--LTGQDAVHLARNFDKIVDL------TGIILTRMDG-DGRGGAALSMRTV  265 (461)
Q Consensus       222 -da--~~Gq~a~~~a~~F~~~~~i------~giIlTKlD~-~akgG~als~~~~  265 (461)
                       ||  .+|     ..+++.. ..=      ..+|+++++- =-+-|-.||+..+
T Consensus       151 RDADRvIG-----lLea~~~-i~~~GEE~~~~LivNR~rP~mV~~G~Mlsi~Dv  198 (272)
T TIGR01968       151 RDADRVIG-----LLEAKGN-IEEKGEEVKIKLIVNRLRPEMVKKGDMLSIDDV  198 (272)
T ss_pred             HHHHHHHH-----HHCCCCC-CCCCCCEEEEEEEEECCCHHHHHCCCCCCHHHH
T ss_conf             02556752-----4212455-445776464347785156477416898278999


No 247
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans.  NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes.  Thus, defects in NOG1 can lead to defects in 60S biogenesis.  The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function.  It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.72  E-value=0.032  Score=37.16  Aligned_cols=145  Identities=15%  Similarity=0.157  Sum_probs=72.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      .|.++|..-+||+|-.-.|.       |.++. |+ +  +|+-     |      .+.....               ...
T Consensus         2 ~VaivG~pNvGKStL~N~L~-------g~~~~-v~-~--~p~T-----T------r~~~~~~---------------~~~   44 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLT-------RAKPE-VA-P--YPFT-----T------KSLFVGH---------------FDY   44 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHH-------CCCCE-EC-C--CCCC-----C------CCCEEEE---------------EEE
T ss_conf             79998899988999999995-------89860-23-7--5872-----3------5743689---------------998


Q ss_pred             CCCCEEEEECCCCCCCHHHHHH--HHHHHHHHCC-CCCCCCCCCHHCC--HHHHHHHHHHHHHCC-----CCCEEEEECC
Q ss_conf             1588699833442221124689--9999985138-5110003101112--256888898876358-----4407764115
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQ--EISEIKSLTN-PHEILLVADALTG--QDAVHLARNFDKIVD-----LTGIILTRMD  251 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~--El~~i~~~~~-p~e~~lV~da~~G--q~a~~~a~~F~~~~~-----i~giIlTKlD  251 (461)
                      +++.++++||+|=......-+.  |...+....+ .+-+++|+|+...  ...-++.+.+++...     -.=+++.|.|
T Consensus        45 ~~~~~~liDTpGi~~~~~~~~~~ie~~~~~~l~~~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~D  124 (168)
T cd01897          45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKID  124 (168)
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             37276872488655674788889999999999835776899996887678489999999998776525888799994753


Q ss_pred             CCCCCC--HHHHHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf             766330--36777888478730261--586723210
Q gi|254780711|r  252 GDGRGG--AALSMRTVTGKPIKAIG--TGEKINDLE  283 (461)
Q Consensus       252 ~~akgG--~als~~~~~~~PI~fig--~GE~~~dle  283 (461)
                      --..-.  .+.......+.|+.+|+  +|+.+++|.
T Consensus       125 l~~~~~~~~~~~~~~~~~~~vi~ISA~~g~Gi~~L~  160 (168)
T cd01897         125 LLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVK  160 (168)
T ss_pred             CCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf             458100799999997089988999815896999999


No 248
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.71  E-value=0.031  Score=37.32  Aligned_cols=50  Identities=22%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHH------CCCCE------EEECCCCCCCHHHHHHHHH
Q ss_conf             89962344333468899999999861------48950------7820542210047799998
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTL------KKKKI------LMASLDVHRPAAQEQLRYL  151 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~------~~~kV------~lv~~Dt~R~aA~eQL~~~  151 (461)
                      -.++||-.|+|||.-+--||......      .+++|      .++|.-.||----+-|+..
T Consensus       209 NpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~LiAGtkyRGefEeRlk~v  270 (758)
T PRK11034        209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL  270 (758)
T ss_pred             CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCHHHHHHHHHH
T ss_conf             96021699986999999999999738997655898899845877861686415499999999


No 249
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.71  E-value=0.028  Score=37.56  Aligned_cols=219  Identities=14%  Similarity=0.165  Sum_probs=97.6

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      +--++.++|+|||||||.+-=++..+.-..| +|.+-..|+...   ..+..+.+++++- |..+..+-....+++-+.+
T Consensus        36 ~GE~v~iiG~nGsGKSTL~r~l~gl~~P~~G-~I~i~G~~~~~~---~~~~~~r~~ig~v-fQ~P~~~l~~~tV~e~i~f  110 (281)
T PRK13633         36 KGEFLVILGHNGSGKSTIAKHMNALLLPSEG-KVYVDGLDTSDE---ENLWDIRNKAGMV-FQNPDNQIVATIVEEDVAF  110 (281)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCH---HHHHHHHHCEEEE-EECCCCCCCHHHHHHHHHH
T ss_conf             9989999999998499999999758878885-699999987885---6699987360898-6688642028899999998


Q ss_pred             HHHC-CCC--------------EEEEECCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHH------HHH
Q ss_conf             9741-588--------------6998334422211-246899999985138511000310-1112256888------898
Q gi|254780711|r  179 ARDG-GYD--------------AVILDTAGRNHIN-DSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHL------ARN  235 (461)
Q Consensus       179 a~~~-~~D--------------~iiiDTaGR~~~d-~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~------a~~  235 (461)
                      ...+ +.+              +=|-+-.-|.+.. ..=..+--.|..+.--+--+|++| .++|.|...+      .+.
T Consensus       111 g~~~~g~~~~e~~~rv~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA~aLa~~P~iLilDEPTs~LDp~~~~~i~~~l~~  190 (281)
T PRK13633        111 GPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKE  190 (281)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             89886999999999999999867948766389100898599999999999859999998187343898999999999999


Q ss_pred             HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCC-CHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             8763584407764115766330367778884787302615867232---1001-36889987735862788999874211
Q gi|254780711|r  236 FDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENF-FPDRIANRILGMGDVVSLVEKAARNL  311 (461)
Q Consensus       236 F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F-~p~~~~~riLGmgD~~~l~e~~~~~~  311 (461)
                      .++..++|-+++|- |        ++.+.. ---|.++--|+-+.+   =|.| +|+.+-..=|....+..|.+..+.. 
T Consensus       191 l~~e~g~Tii~vTH-d--------l~~~~~-aDrv~vm~~G~Iv~~G~p~evf~~~~~L~~~~l~~P~~~~l~~~L~~~-  259 (281)
T PRK13633        191 LNKKYGITIILITH-Y--------MEEAVE-ADRIIVMDKGKVVMEGTPKEIFKEVEMMKKIGLDVPQVTELAYELRKE-  259 (281)
T ss_pred             HHHHCCCEEEEECC-C--------HHHHHC-CCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHC-
T ss_conf             99840989999867-8--------899973-998999989999997799999769889997799999199999999974-


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             267899888653104637999999999985
Q gi|254780711|r  312 NEKQAALTAKKIAKGKFDLEDLAEQFRQTQ  341 (461)
Q Consensus       312 d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~  341 (461)
                              .-.+-+..+|.+++.+-+.+++
T Consensus       260 --------g~~~~~~~~t~~e~~~~l~~~k  281 (281)
T PRK13633        260 --------GVDIPSDILTIDEMVNELCQLK  281 (281)
T ss_pred             --------CCCCCCCCCCHHHHHHHHHHCC
T ss_conf             --------9999988779999999998639


No 250
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.71  E-value=0.0075  Score=41.97  Aligned_cols=27  Identities=33%  Similarity=0.537  Sum_probs=22.8

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             8841899623443334688999999998
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLK  125 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~  125 (461)
                      .-|+ ++|.|+.|+||||++--||+.+-
T Consensus        36 ~~ph-lLf~GppG~GKTt~a~~la~~l~   62 (318)
T PRK00440         36 NMPH-LLFAGPPGTGKTTAALALARELY   62 (318)
T ss_pred             CCCE-EEEECCCCCCHHHHHHHHHHHHC
T ss_conf             9866-98889599889999999999976


No 251
>PRK01184 hypothetical protein; Provisional
Probab=96.70  E-value=0.021  Score=38.56  Aligned_cols=40  Identities=28%  Similarity=0.454  Sum_probs=26.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf             1899623443334688999999998614895078205422100477
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE  146 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e  146 (461)
                      .+|-++|..||||+|. +++   ++. .|.+| +-+.|.-|-.+.+
T Consensus         2 ~iIGlTG~iGSGKstv-a~i---~~e-~G~~v-i~~~Divr~~v~~   41 (183)
T PRK01184          2 MIIIVTGMPGSGKGEF-SKI---ARE-LGIPV-VVMGDVIREEVKK   41 (183)
T ss_pred             EEEEEECCCCCCHHHH-HHH---HHH-CCCEE-EECCHHHHHHHHH
T ss_conf             3999968998878999-999---997-79939-9860778999998


No 252
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.70  E-value=0.0011  Score=48.39  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             189962344333468899999999861489507820
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS  136 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~  136 (461)
                      ..|+++|++||||||+..-|..++.. .+.++..+-
T Consensus       140 ~~ilIsG~TGSGKTT~l~all~~i~~-~~~riitiE  174 (283)
T pfam00437       140 GNILVSGGTGSGKTTLLYALLNEINT-DDERIVTIE  174 (283)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC-CCCCEEEEC
T ss_conf             75999889999889999999984087-776278733


No 253
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.69  E-value=0.036  Score=36.79  Aligned_cols=172  Identities=20%  Similarity=0.273  Sum_probs=95.7

Q ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHHC----CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             996234-43334688999999998614----8950782054221004779999851034742223321036899999999
Q gi|254780711|r  103 IMLVGL-QGSGKTTTTAKIAYHLKTLK----KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ  177 (461)
Q Consensus       103 IllvGl-~GsGKTTT~aKLA~~~~~~~----~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~  177 (461)
                      |++.|+ -|+||||.+.-|.+.|++++    ..||+   -|---|+ +..+-+=....|.+.|-..    + +.+++...
T Consensus         3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvG---PDYIDP~-~H~~atG~~srNLD~~mm~----~-~~v~~~f~   73 (451)
T COG1797           3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVG---PDYIDPG-YHTAATGRPSRNLDSWMMG----E-EGVRALFA   73 (451)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCH-HHHHHHCCCCCCCCHHHCC----H-HHHHHHHH
T ss_conf             599548888858999999999998668721665568---7863813-5667638856777654469----9-89999999


Q ss_pred             HHHHCCCCEEEEECC-------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH-CCHHHHHHHHHHH---HHCCCCCEE
Q ss_conf             997415886998334-------42221124689999998513851100031011-1225688889887---635844077
Q gi|254780711|r  178 SARDGGYDAVILDTA-------GRNHINDSLMQEISEIKSLTNPHEILLVADAL-TGQDAVHLARNFD---KIVDLTGII  246 (461)
Q Consensus       178 ~a~~~~~D~iiiDTa-------GR~~~d~~lm~El~~i~~~~~p~e~~lV~da~-~Gq~a~~~a~~F~---~~~~i~giI  246 (461)
                      +. .+..|+.||.-.       +.-. +..=-..+.++..+    -|+||+|+. ..+.+..+++-|.   ..+++.|||
T Consensus        74 ~~-~~~adi~vIEGVMGLfDG~~~~~-~~gSTA~lAk~l~~----PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVI  147 (451)
T COG1797          74 RA-AADADIAVIEGVMGLFDGRGSAT-DTGSTADLAKLLGA----PVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVI  147 (451)
T ss_pred             HH-CCCCCEEEEEECCCCCCCCCCCC-CCCCHHHHHHHHCC----CEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             86-27898799961230236887776-77779999998599----98999957522578999998898619988257899


Q ss_pred             EEECCCCCCCCHHHHHHHH-HCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             6411576633036777888-47873026158672321001368899877358
Q gi|254780711|r  247 LTRMDGDGRGGAALSMRTV-TGKPIKAIGTGEKINDLENFFPDRIANRILGM  297 (461)
Q Consensus       247 lTKlD~~akgG~als~~~~-~~~PI~fig~GE~~~dle~F~p~~~~~riLGm  297 (461)
                      ++++-+.....-.-.+... ++  +..+|.=.+-++++.      -+|=||.
T Consensus       148 lNrVgserH~~llr~Ale~~~g--v~vlG~lpr~~~l~l------p~RHLGL  191 (451)
T COG1797         148 LNRVGSERHYELLRDALEEYTG--VPVLGYLPRDDDLEL------PSRHLGL  191 (451)
T ss_pred             EECCCCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCC------CCCCCCC
T ss_conf             7247778899999987553279--857987427855678------5413265


No 254
>cd00880 Era_like Era (E. coli Ras-like protein)-like.  This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons.  FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control.  Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain.  EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.69  E-value=0.0049  Score=43.37  Aligned_cols=142  Identities=22%  Similarity=0.231  Sum_probs=67.8

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             62344333468899999999861489507820542210047799998510347422233210368999999999974158
Q gi|254780711|r  105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGY  184 (461)
Q Consensus       105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~  184 (461)
                      ++|..++||||-+-.|.       |.+++.++-   +|+.-         ... .+....               .....
T Consensus         1 ivG~~N~GKStL~N~L~-------~~~~~~vs~---~~gtT---------~~~-~~~~~~---------------~~~~~   45 (163)
T cd00880           1 LFGRTNAGKSSLLNALL-------GQEVAIVSP---VPGTT---------TDP-VEYVWE---------------LGPLG   45 (163)
T ss_pred             CCCCCCCCHHHHHHHHH-------CCCCCEECC---CCCEE---------CCC-EEEEEE---------------ECCCC
T ss_conf             91979989999999995-------899610169---89986---------564-589999---------------54786


Q ss_pred             CEEEEECCCCCCCHHHHHHHH-HHH-HHHCCCCCCCCCCCHHCCHHHHH--HHHHHHHHCCCCCEEEEECCCCCCC--CH
Q ss_conf             869983344222112468999-999-85138511000310111225688--8898876358440776411576633--03
Q gi|254780711|r  185 DAVILDTAGRNHINDSLMQEI-SEI-KSLTNPHEILLVADALTGQDAVH--LARNFDKIVDLTGIILTRMDGDGRG--GA  258 (461)
Q Consensus       185 D~iiiDTaGR~~~d~~lm~El-~~i-~~~~~p~e~~lV~da~~Gq~a~~--~a~~F~~~~~i~giIlTKlD~~akg--G~  258 (461)
                      .+.++||+|=...... -.+. +.. ..+-+.|-+++|+||..+....+  ..+...+.-.-.=+|++|.|--..-  -.
T Consensus        46 ~i~lvDtpG~~~~~~~-~~~~~~~~~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~  124 (163)
T cd00880          46 PVVLIDTPGIDEAGGL-GREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEE  124 (163)
T ss_pred             EEEEEECCCCCCCCCH-HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHH
T ss_conf             5999727985222310-168999999999868989999878999755669999999971974278853420678789999


Q ss_pred             H-----HHHHHHHCCCHHHEE--CCCCCCCC
Q ss_conf             6-----777888478730261--58672321
Q gi|254780711|r  259 A-----LSMRTVTGKPIKAIG--TGEKINDL  282 (461)
Q Consensus       259 a-----ls~~~~~~~PI~fig--~GE~~~dl  282 (461)
                      .     .......+.||.+|+  +|+.+++|
T Consensus       125 ~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~L  155 (163)
T cd00880         125 LLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf             9999999987679985999978989799999


No 255
>COG2403 Predicted GTPase [General function prediction only]
Probab=96.67  E-value=0.031  Score=37.28  Aligned_cols=147  Identities=18%  Similarity=0.226  Sum_probs=85.4

Q ss_pred             HHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC-CCCCCCHHHHH----HHHHHHCC----
Q ss_conf             7187742100025884189962344333468899999999861489507820-54221004779----99985103----
Q gi|254780711|r   85 VLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS-LDVHRPAAQEQ----LRYLGEQI----  155 (461)
Q Consensus        85 lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~-~Dt~R~aA~eQ----L~~~a~~~----  155 (461)
                      +|+|.+.-+  ...+|.+=...-=+|+|||+..+..|+.++.+ |.+|.+|. --.||---++|    |..+++.-    
T Consensus       114 ~~gP~et~~--~~ekPviaV~atrtg~GKsaVS~~v~r~l~er-gyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~  190 (449)
T COG2403         114 ELGPKETML--KLEKPVIAVTATRTGVGKSAVSRYVARLLRER-GYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAA  190 (449)
T ss_pred             EECCCHHHH--HHCCCEEEEEEECCCCCHHHHHHHHHHHHHHC-CCCEEEEECCEEECCCCCHHHHHHHHCHHHCCCCCC
T ss_conf             727527766--51485599997236655678889999999866-982379955702337731001897737765264225


Q ss_pred             ----------CCCC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             ----------4742-22332103689999999999741588699833442221124689999998513851100031011
Q gi|254780711|r  156 ----------QVDT-LEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL  224 (461)
Q Consensus       156 ----------~v~~-~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~  224 (461)
                                .++. .....|-|-..+.++|.+.+     |+|+.|-.|   +|          .-.++||--+-|.||.
T Consensus       191 t~eereeye~~I~tg~~vlAGvdy~~vlke~~~~a-----D~IlwdGgn---nd----------fPfvkpd~~Ivvvda~  252 (449)
T COG2403         191 TDEEREEYESYIPTGGGVLAGVDYGTVLKEGEKEA-----DFILWDGGN---ND----------FPFVKPDLHIVVVDAL  252 (449)
T ss_pred             CHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHC-----CEEEEECCC---CC----------CCCCCCCCEEEEECCC
T ss_conf             56668878743643553465204899998776415-----589994888---77----------8852577059993388


Q ss_pred             C-CHHHHHHHHHHHHHCC---CCCEEEEECCCCCCC
Q ss_conf             1-2256888898876358---440776411576633
Q gi|254780711|r  225 T-GQDAVHLARNFDKIVD---LTGIILTRMDGDGRG  256 (461)
Q Consensus       225 ~-Gq~a~~~a~~F~~~~~---i~giIlTKlD~~akg  256 (461)
                      - |++..+    |--.+.   -+-+|+||+|.-..+
T Consensus       253 rpg~ei~~----~pGe~~irlAD~VIItkveea~~~  284 (449)
T COG2403         253 RPGEEIGS----FPGELRIRLADLVIITKVEEAMAE  284 (449)
T ss_pred             CCCHHHCC----CCCCEEEEECCEEEEECCCCHHHH
T ss_conf             87256526----877315322128999613513367


No 256
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.65  E-value=0.026  Score=37.83  Aligned_cols=30  Identities=27%  Similarity=0.281  Sum_probs=26.3

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             588418996234433346889999999986
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKT  126 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~  126 (461)
                      ..-|+-+||.|+.|+||||++-.+|.++-.
T Consensus        36 grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~   65 (363)
T PRK07471         36 GRLHHAWLIGGPQGIGKATLAYRMARFLLA   65 (363)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             997645876799981889999999999857


No 257
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.64  E-value=0.0072  Score=42.12  Aligned_cols=56  Identities=25%  Similarity=0.341  Sum_probs=39.0

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf             10002588418996234433346889999999986148950782054221004779999
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRY  150 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~  150 (461)
                      .+...++  .++.++|+|||||||.+-=|+..++-..| +|.+-..|+.......+++.
T Consensus        22 sl~i~~G--e~vaiiG~nGsGKSTL~~~l~Gll~P~~G-~I~v~G~d~~~~~~~~~~r~   77 (274)
T PRK13644         22 NLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRPQKG-KVLVSGIDTGDFSKLQGIRK   77 (274)
T ss_pred             EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCHHHHHHHH
T ss_conf             7798489--99999999998099999999706858887-29999998787056799987


No 258
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily.  EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes.  EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains.  This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha).  eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis.  EF-Tu can have no such role in bacteria.  In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene.  This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.62  E-value=0.0035  Score=44.49  Aligned_cols=131  Identities=18%  Similarity=0.261  Sum_probs=64.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHH-----HHH
Q ss_conf             9962344333468899999999861489507820542210047799998510347422--233210368999-----999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL--EVIPEQSPEKIA-----IRA  175 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~--~~~~~~dp~~i~-----~~a  175 (461)
                      |.++|--++||||.++.|.+..-.        +.     +...+.++..++..|-+-+  +-.....+.+-.     .-+
T Consensus         2 i~iiGHvD~GKSTL~g~lL~~~g~--------i~-----~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~   68 (219)
T cd01883           2 LVVIGHVDAGKSTTTGHLLYLLGG--------VD-----KRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVG   68 (219)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCC--------CC-----HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEE
T ss_conf             899966899899999999998599--------76-----88999999999854998750556613898798589258858


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH---------HHHHHHHHHHHHCCCCCE-
Q ss_conf             9999741588699833442221124689999998513851100031011122---------568888988763584407-
Q gi|254780711|r  176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ---------DAVHLARNFDKIVDLTGI-  245 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq---------~a~~~a~~F~~~~~i~gi-  245 (461)
                      ..++.-+++.+.||||+|--..    +.++..  .+...|-.+||+||..|-         +..+.+..- ..+++..+ 
T Consensus        69 ~~~f~~~~~~~~iiDtPGH~df----~~~mi~--g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~-~~lGik~iI  141 (219)
T cd01883          69 LAKFETEKYRFTILDAPGHRDF----VPNMIT--GASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGVKQLI  141 (219)
T ss_pred             EEEEEECCEEEEEEECCCCHHH----HHHHHH--HHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH-HHCCCCEEE
T ss_conf             9999849936999878972667----889998--775316689999857675103667776599999999-984997489


Q ss_pred             -EEEECCCC
Q ss_conf             -76411576
Q gi|254780711|r  246 -ILTRMDGD  253 (461)
Q Consensus       246 -IlTKlD~~  253 (461)
                       .+.|||..
T Consensus       142 VavNKMD~v  150 (219)
T cd01883         142 VAVNKMDDV  150 (219)
T ss_pred             EEEECCCCC
T ss_conf             999875368


No 259
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=96.61  E-value=0.023  Score=38.20  Aligned_cols=130  Identities=18%  Similarity=0.212  Sum_probs=72.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH-HH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742223321036899999999-99
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ-SA  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~-~a  179 (461)
                      -+|.+||-.-+||.|---+|.       +++.++|. |+               -||.-       |       -+. .+
T Consensus       280 p~VAIVGRPNVGKSTLFNRL~-------g~r~AIV~-d~---------------pGvTR-------D-------R~~~~~  322 (714)
T PRK09518        280 GTVAIVGRPNVGKSTLVNRIL-------GRREAVVE-DT---------------PGVTR-------D-------RVSYDA  322 (714)
T ss_pred             CEEEEECCCCCCHHHHHHHHH-------CCCEEEEC-CC---------------CCCCC-------C-------CCEEEE
T ss_conf             879998999876899998862-------88416846-98---------------99883-------7-------555799


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC-CCCCCCCCCCHHCCHHH--HHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             7415886998334422211246899999-98513-85110003101112256--88889887635844077641157663
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISE-IKSLT-NPHEILLVADALTGQDA--VHLARNFDKIVDLTGIILTRMDGDGR  255 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~-i~~~~-~p~e~~lV~da~~Gq~a--~~~a~~F~~~~~i~giIlTKlD~~ak  255 (461)
                      .-.+..+.||||+|-....+.+-.++.. ...++ ..|-++||+|+..|-..  ..+|+-....=.-.=+++.|+|+...
T Consensus       323 ~~~~~~F~lvDTGG~~~~~~~~~~~I~~Q~~~Ai~eADlIlFVVD~~~Glt~~D~~ia~~LRk~~KpvilvvNK~D~~~~  402 (714)
T PRK09518        323 EWAGRDFKLVDTGGWEADAEGIEAAIASQAEIAMTLADAIVFVVDGQVGMTSTDEVIARMLQRAGKPVVLVANKIDDQAS  402 (714)
T ss_pred             EECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf             99991699997999998832699999999999999689999999689798978999999998569988999989788764


Q ss_pred             CCHHHHHHHHHCC
Q ss_conf             3036777888478
Q gi|254780711|r  256 GGAALSMRTVTGK  268 (461)
Q Consensus       256 gG~als~~~~~~~  268 (461)
                      -. .++--+..|.
T Consensus       403 e~-~~~ef~~LG~  414 (714)
T PRK09518        403 EY-DVAEFWKLGL  414 (714)
T ss_pred             HH-HHHHHHHCCC
T ss_conf             01-2999996599


No 260
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and    vesicular transport]
Probab=96.61  E-value=0.0074  Score=42.02  Aligned_cols=69  Identities=28%  Similarity=0.279  Sum_probs=36.8

Q ss_pred             EEEEECCCCCCCHH----HHHHHHHH------HHHHCCCCC-CCCCCCH---HCCHHHHH--H-------HHHHHHHCCC
Q ss_conf             69983344222112----46899999------985138511-0003101---11225688--8-------8988763584
Q gi|254780711|r  186 AVILDTAGRNHIND----SLMQEISE------IKSLTNPHE-ILLVADA---LTGQDAVH--L-------ARNFDKIVDL  242 (461)
Q Consensus       186 ~iiiDTaGR~~~d~----~lm~El~~------i~~~~~p~e-~~lV~da---~~Gq~a~~--~-------a~~F~~~~~i  242 (461)
                      -|+||||||.....    .--.|=..      =.+...|.. +++.+|.   ++.+.+..  -       .++-++++++
T Consensus       176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~  255 (1188)
T COG3523         176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA  255 (1188)
T ss_pred             EEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             48985875244366750234888999888999735578886379997899973899999999999999999999984156


Q ss_pred             C---CEEEEECCCCC
Q ss_conf             4---07764115766
Q gi|254780711|r  243 T---GIILTRMDGDG  254 (461)
Q Consensus       243 ~---giIlTKlD~~a  254 (461)
                      .   -+.+||+|--.
T Consensus       256 ~~PVYl~lTk~Dll~  270 (1188)
T COG3523         256 RLPVYLVLTKADLLP  270 (1188)
T ss_pred             CCCEEEEEECCCCCC
T ss_conf             776389986210021


No 261
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=96.61  E-value=0.0035  Score=44.53  Aligned_cols=134  Identities=15%  Similarity=0.218  Sum_probs=71.4

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      +| .|+++||.||||||-..+|..      ++.+--++  +..+             ++   ....              
T Consensus         3 ~p-tvLllGl~~sGKT~Lf~~L~~------~~~~~T~t--S~~~-------------n~---~~~~--------------   43 (181)
T pfam09439         3 QP-AVIIAGLCDSGKTSLFTLLTT------GSVRKTVT--SQEP-------------SA---AYKY--------------   43 (181)
T ss_pred             CC-EEEEECCCCCCHHHHHHHHHC------CCCCCEEC--CCCC-------------CC---EEEE--------------
T ss_conf             88-699986899989999999975------99487588--8678-------------64---0687--------------


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             97415886998334422211246899999985138511000310111225-68888988763584407764115766330
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-AVHLARNFDKIVDLTGIILTRMDGDGRGG  257 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-a~~~a~~F~~~~~i~giIlTKlD~~akgG  257 (461)
                      ...++..+.+||+.|-......+.+.+....   +-.-+++|+||.+-+. .-+.|+-.++.+-.               
T Consensus        44 ~~~~~~~~~lvD~PGh~klR~~~~~~~~~~~---~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~---------------  105 (181)
T pfam09439        44 MNNKGNSLTLIDFPGHVKLRYKLLETLKDSS---SLRGLVFVVDSTAFPKEVTDTAEFLYDILSI---------------  105 (181)
T ss_pred             ECCCCCEEEEEECCCCHHHHHHHHHHHHHHC---CCEEEEEEEECCCCHHHHHHHHHHHHHHHHC---------------
T ss_conf             5168966899988996899999998643002---6449999997866566799999999999844---------------


Q ss_pred             HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             36777888478730261586723210013688998773
Q gi|254780711|r  258 AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL  295 (461)
Q Consensus       258 ~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL  295 (461)
                         +....-++||...++=+.   +---.|..++...|
T Consensus       106 ---~~~~~~~vPvLI~cNKqD---l~~A~~~~~Ik~~L  137 (181)
T pfam09439       106 ---TELLKNGIDILIACNKQE---IFTARPPKKIKQAL  137 (181)
T ss_pred             ---HHHCCCCCCEEEEEECCC---CCCCCCHHHHHHHH
T ss_conf             ---543368997899973746---33577999999999


No 262
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.61  E-value=0.091  Score=33.71  Aligned_cols=218  Identities=16%  Similarity=0.145  Sum_probs=105.2

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHHHHHCCCCCC-------CCCC------
Q ss_conf             84189962344333468899999999861489507820542--21004779999851034742-------2233------
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV--HRPAAQEQLRYLGEQIQVDT-------LEVI------  163 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt--~R~aA~eQL~~~a~~~~v~~-------~~~~------  163 (461)
                      +-.++.++|+|||||||.+-=|+..++-..|. |.+-..+.  -+.+    +..+.+.+++-|       |...      
T Consensus        31 ~Ge~~aiiG~NGaGKSTLl~~i~Gll~p~~G~-I~~~G~~i~~~~~~----~~~~r~~ig~vfQ~p~~~l~~~tV~e~v~  105 (285)
T PRK13636         31 KGEVTAILGGNGAGKSTLFQNLNGILKPSSGR-ILFDGKPIDYSRKG----LMKLRESVGMVFQDPDNQLFSASVYQDVS  105 (285)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHH----HHHHHHHEEEEEECCCCCCCCCCHHHHHH
T ss_conf             99899999999980999999996598888608-99999998744344----99998740699707642447574999999


Q ss_pred             -----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHH---
Q ss_conf             -----21036899999999997415886998334422211-246899999985138511000310-11122568888---
Q gi|254780711|r  164 -----PEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIN-DSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLA---  233 (461)
Q Consensus       164 -----~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d-~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a---  233 (461)
                           .+-...++ ++.++.+-.. .++  -+-+.|...+ ..=..+.-.|..++--+--+|++| -+.|.|.....   
T Consensus       106 ~g~~~~g~~~~e~-~~rv~~~L~~-~gl--~~~~~~~~~~LSGGqkqRvaIA~aLa~~P~iLlLDEPTagLDp~~~~~i~  181 (285)
T PRK13636        106 FGAVNLKLPEDEV-RKRVDNALKR-TGI--EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM  181 (285)
T ss_pred             HHHHHCCCCHHHH-HHHHHHHHHH-CCC--HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             9999859999999-9999999987-598--86652880019999999999999997499899997875559999999999


Q ss_pred             ---HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCC-CHHHHHHHHHCCCCHHHHHHH
Q ss_conf             ---9887635844077641157663303677788847873026158672321---001-368899877358627889998
Q gi|254780711|r  234 ---RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENF-FPDRIANRILGMGDVVSLVEK  306 (461)
Q Consensus       234 ---~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F-~p~~~~~riLGmgD~~~l~e~  306 (461)
                         +..++..+.|=+++|- |        +..+...---|.++..|+-+.+=   |.| +|+-+-+-=|....+..|++.
T Consensus       182 ~ll~~l~~e~g~TiilvtH-d--------~~~v~~~aDrvivl~~G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~l~~~  252 (285)
T PRK13636        182 KLLVEMQKELGLTIIIATH-D--------IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLPRIGHLMEI  252 (285)
T ss_pred             HHHHHHHHHCCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCCHHHHHHH
T ss_conf             9999999844989999948-8--------999999699999998998999869999966999999779999969999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf             742112678998886531046379999999999851
Q gi|254780711|r  307 AARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQK  342 (461)
Q Consensus       307 ~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~k  342 (461)
                      .++.-        .-.+..-.+|.++..+.++..++
T Consensus       253 L~~~~--------g~~~~~~~lt~~e~~~~l~~~~~  280 (285)
T PRK13636        253 LKEKD--------GFVFDELDLTISQARKTLNSWKN  280 (285)
T ss_pred             HHHHC--------CCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             98830--------99989997779999999999998


No 263
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=96.60  E-value=0.09  Score=33.73  Aligned_cols=166  Identities=16%  Similarity=0.225  Sum_probs=92.5

Q ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEE---ECCCCCCC---HHHHHHHHHHHCC----CCCCCCCCCCCHHH-
Q ss_conf             8996234-43334688999999998614895078---20542210---0477999985103----47422233210368-
Q gi|254780711|r  102 VIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILM---ASLDVHRP---AAQEQLRYLGEQI----QVDTLEVIPEQSPE-  169 (461)
Q Consensus       102 vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~l---v~~Dt~R~---aA~eQL~~~a~~~----~v~~~~~~~~~dp~-  169 (461)
                      .+.+.|- +|+|||..++=||++++. .|.+|..   |.+.....   .-.+-|+..+...    .+..|.-....-|. 
T Consensus         4 ~~fVtGTDT~VGKTv~S~aL~~~l~~-~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P~sPhl   82 (223)
T COG0132           4 RFFVTGTDTGVGKTVVSAALAQALKQ-QGYSVAGYKPVQTGSEETAENSDALVLQRLSGLDLSYELINPYRFKEPLSPHL   82 (223)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCCHH
T ss_conf             69998279996499999999999996-89705987752217877899745999998519986633543353078888477


Q ss_pred             -----------HHHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHHHHHH
Q ss_conf             -----------9999999999741588699833442221--12468999999851385110003101112--25688889
Q gi|254780711|r  170 -----------KIAIRATQSARDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADALTG--QDAVHLAR  234 (461)
Q Consensus       170 -----------~i~~~a~~~a~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~~~a~  234 (461)
                                 +.....+....+ .||.|||--||-+-.  .++  .-+..+....+ ..++||...-.|  ..++=.++
T Consensus        83 Aa~~eg~~I~~~~l~~~l~~l~~-~~d~vlVEGAGGl~vPl~~~--~~~~D~~~~~~-lpvILV~~~~LGtINHtlLt~e  158 (223)
T COG0132          83 AAELEGRTIDLEKLSQGLRQLLK-KYDLVLVEGAGGLLVPLTEE--YTFADLAVQLQ-LPVILVVGIKLGTINHTLLTVE  158 (223)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCEEEECCCC--CCHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHH
T ss_conf             78764893569999878885405-46789996787333325786--52999999809-9999996677577879999999


Q ss_pred             HHH-HHCCCCCEEEEECCCCCCCCHHH--HHHHHHCCCHHH
Q ss_conf             887-63584407764115766330367--778884787302
Q gi|254780711|r  235 NFD-KIVDLTGIILTRMDGDGRGGAAL--SMRTVTGKPIKA  272 (461)
Q Consensus       235 ~F~-~~~~i~giIlTKlD~~akgG~al--s~~~~~~~PI~f  272 (461)
                      +-. ..+++-|+|+-........=...  .+...++.|+..
T Consensus       159 al~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~~g  199 (223)
T COG0132         159 ALRARGLPLAGWVANGINPELDHYAEINATLLKRIGAPLLG  199 (223)
T ss_pred             HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99977998789997267885557888899999742897434


No 264
>CHL00176 ftsH cell division protein; Validated
Probab=96.59  E-value=0.032  Score=37.12  Aligned_cols=201  Identities=21%  Similarity=0.295  Sum_probs=113.2

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             99998718774210002588418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r   80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT  159 (461)
Q Consensus        80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~  159 (461)
                      +|++..|...+.--.+..+.|.=+||+||.|+|||--    |+-....                           .+|||
T Consensus       190 ~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlL----AkAvAgE---------------------------a~vpF  238 (631)
T CHL00176        190 EEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLL----AKAIAGE---------------------------AEVPF  238 (631)
T ss_pred             HHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHH----HHHHHCC---------------------------CCCCE
T ss_conf             9999983595887644996896589889899878899----9998565---------------------------58846


Q ss_pred             CCC--------CCCCHHHHHHHHHHHHHHHCCCCEEEEE---CCCCCC-------C---HHHHHHHHHHHHHHCCCCCCC
Q ss_conf             223--------3210368999999999974158869983---344222-------1---124689999998513851100
Q gi|254780711|r  160 LEV--------IPEQSPEKIAIRATQSARDGGYDAVILD---TAGRNH-------I---NDSLMQEISEIKSLTNPHEIL  218 (461)
Q Consensus       160 ~~~--------~~~~dp~~i~~~a~~~a~~~~~D~iiiD---TaGR~~-------~---d~~lm~El~~i~~~~~p~e~~  218 (461)
                      |..        ..|..+.. +++-.+.|+++.--+|+||   .-||..       +   +.-|.+=|.++.. .+..+-+
T Consensus       239 ~~~sgs~F~e~~vGvga~r-VR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDG-f~~~~gV  316 (631)
T CHL00176        239 FSISGSEFVEMFVGVGAAR-VRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDG-FEGNKGV  316 (631)
T ss_pred             EEEEHHHHHHHHCCHHHHH-HHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCE
T ss_conf             9988378556421555899-9999999986399699987101201147898889850899999999998428-8878886


Q ss_pred             CCCCHHCCHHHHHHHH----HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHH
Q ss_conf             0310111225688889----887635844077641157663303677788847873026158672321001368899877
Q gi|254780711|r  219 LVADALTGQDAVHLAR----NFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRI  294 (461)
Q Consensus       219 lV~da~~Gq~a~~~a~----~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~ri  294 (461)
                      +|+-||.--|.++-|-    .|...     |.+..-|-.  |=..+=-+|.-++|+.        +   ..+.+.+|.+-
T Consensus       317 iViaATNrpd~LDpALlRPGRFDR~-----I~V~lPD~~--gR~~IL~vh~k~~~l~--------~---dvdl~~iA~~T  378 (631)
T CHL00176        317 IVIAATNRIDILDAALLRPGRFDRQ-----VTVSLPDFE--GRLDILKVHARNKKLA--------E---DVSLELIARRT  378 (631)
T ss_pred             EEEEECCCCCCCCHHHCCCCCCCEE-----EEECCCCHH--HHHHHHHHHHHCCCCC--------C---CHHHHHHHHHC
T ss_conf             9998258855456866268877549-----982698989--9999999997078666--------5---30099998626


Q ss_pred             HCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             358--6278899987421126789988865310463799999999998
Q gi|254780711|r  295 LGM--GDVVSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQT  340 (461)
Q Consensus       295 LGm--gD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i  340 (461)
                      -|+  -|+..|+..|         ..++-|-.+...+..||.+.+..+
T Consensus       379 ~GfSGAdLanlvNEA---------al~AaR~~~~~it~~d~~~AidrV  417 (631)
T CHL00176        379 PGFSGADLANLLNEA---------AILAARRRKNQITMSEIDEAIDRV  417 (631)
T ss_pred             CCCCHHHHHHHHHHH---------HHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             998678887699999---------999998477764788999999999


No 265
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.55  E-value=0.027  Score=37.74  Aligned_cols=30  Identities=23%  Similarity=0.375  Sum_probs=26.2

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             588418996234433346889999999986
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKT  126 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~  126 (461)
                      ..-|+.+||.|+.|+||||++-.+|+++-.
T Consensus        42 gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~   71 (352)
T PRK09112         42 GRLHHALLFEGPEGIGKATLAFHLANHILS   71 (352)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             996524653589980899999999999866


No 266
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.54  E-value=0.0059  Score=42.74  Aligned_cols=43  Identities=21%  Similarity=0.277  Sum_probs=33.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEECCCCC-CCHH
Q ss_conf             89962344333468899999999861-4895078205422-1004
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTL-KKKKILMASLDVH-RPAA  144 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~-~~~kV~lv~~Dt~-R~aA  144 (461)
                      +|-++|..||||||++-.|+..+.+. .+.+|.+++.|.| .+-+
T Consensus         1 IIGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f~~~~~   45 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNK   45 (220)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCH
T ss_conf             989788998779999999999860026999489997878757852


No 267
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.52  E-value=0.027  Score=37.79  Aligned_cols=91  Identities=24%  Similarity=0.266  Sum_probs=58.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHH---------HHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC-----------
Q ss_conf             899623443334688999999998---------614895078205422100477999985103474222-----------
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLK---------TLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLE-----------  161 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~---------~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~-----------  161 (461)
                      +.++.|+-|+||||-.--|+-.+.         -.+-.+|+.|+|..+|+-+.+-|+-.+.+++++--.           
T Consensus        91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G  170 (402)
T COG3598          91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG  170 (402)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHEECCCCCC
T ss_conf             58984488623768999999999864777453355888079998226868899999999987099857632200002456


Q ss_pred             CCCCCHHH--HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             33210368--99999999997415886998334
Q gi|254780711|r  162 VIPEQSPE--KIAIRATQSARDGGYDAVILDTA  192 (461)
Q Consensus       162 ~~~~~dp~--~i~~~a~~~a~~~~~D~iiiDTa  192 (461)
                      ...++|.+  +..++-+.......+|.|+||+-
T Consensus       171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~  203 (402)
T COG3598         171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPF  203 (402)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf             787200105899999999998747874997344


No 268
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance.  Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis.  The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC.  Bacitracin has potent antibiotic activity against gram-positive bacteria.  The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin.  The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC.  B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.52  E-value=0.026  Score=37.84  Aligned_cols=44  Identities=23%  Similarity=0.218  Sum_probs=32.7

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             884189962344333468899999999861489507820542210
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP  142 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~  142 (461)
                      .+-.++-++|+||+||||++-=++-.++-..| .|.+-..|..+.
T Consensus        24 ~~Gei~gllG~NGaGKSTLl~~i~Gl~~p~~G-~i~i~G~~~~~~   67 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKN   67 (208)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCC
T ss_conf             69819999999999999999999578378989-999999999979


No 269
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta).  SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane.  Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP.  SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane.  The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane.  SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon.  High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.52  E-value=0.0074  Score=42.01  Aligned_cols=132  Identities=19%  Similarity=0.224  Sum_probs=69.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      .||++||.||||||-..+|..      +..+.-++  +.             .-++.++....               ..
T Consensus         2 tvLl~Gl~~aGKT~Lf~~L~~------~~~~~T~t--S~-------------~~n~~~~~~~~---------------~~   45 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTT------GKYRSTVT--SI-------------EPNVATFILNS---------------EG   45 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHHC------CCCCCCCC--CC-------------CCCCEEEECCC---------------CC
T ss_conf             599990799989999999974------99888778--88-------------78620664024---------------66


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
Q ss_conf             158869983344222112468999999851385110003101112-2568888988763584407764115766330367
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAAL  260 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~al  260 (461)
                      .+.-+-++|++|.......+.+.+   ...  ..-+++|+||.+= ++.-+.|+-.++.+-..-.               
T Consensus        46 ~~~~~~lvD~PGH~klR~~~~~~~---~~~--~~gIVfvVDs~~~~~~l~~~Ae~Ly~iL~~~~~---------------  105 (203)
T cd04105          46 KGKKFRLVDVPGHPKLRDKLLETL---KNS--AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEK---------------  105 (203)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHH---HHC--CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH---------------
T ss_conf             872799998799688999999998---754--989999996887511199999999999862664---------------


Q ss_pred             HHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             77888478730261586723210013688998773
Q gi|254780711|r  261 SMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL  295 (461)
Q Consensus       261 s~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL  295 (461)
                         ...++||...++=+..   ---.|...+...|
T Consensus       106 ---~~~~iPvLIacNKqDl---~tA~~~~~Ik~~L  134 (203)
T cd04105         106 ---VKNKIPVLIACNKQDL---FTAKPAKKIKEQL  134 (203)
T ss_pred             ---CCCCCCEEEEEECCCC---CCCCCHHHHHHHH
T ss_conf             ---3689988999866143---4578999999999


No 270
>pfam00931 NB-ARC NB-ARC domain.
Probab=96.50  E-value=0.037  Score=36.68  Aligned_cols=23  Identities=48%  Similarity=0.603  Sum_probs=18.0

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf             841899623443334688999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAY  122 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~  122 (461)
                      ...||-++|.-|+|||| +||..+
T Consensus        18 ~~~vI~I~G~gGiGKTt-LA~~v~   40 (285)
T pfam00931        18 NLGVVGIVGMGGVGKTT-LAKQIY   40 (285)
T ss_pred             CCEEEEEECCCCCCHHH-HHHHHH
T ss_conf             95399988999563999-999997


No 271
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.48  E-value=0.11  Score=33.15  Aligned_cols=108  Identities=18%  Similarity=0.212  Sum_probs=57.1

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECC----------CCC---CCHHHHHHHHHHHCCC-------C
Q ss_conf             8841899623443334688999999998614895078205----------422---1004779999851034-------7
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASL----------DVH---RPAAQEQLRYLGEQIQ-------V  157 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~----------Dt~---R~aA~eQL~~~a~~~~-------v  157 (461)
                      .+..+++||||.|+|||+-+--+|.-+- ++-.++.+...          -||   -||-+=|--.-|...|       +
T Consensus       347 ~kg~IlclvGpPGvGKTSl~~sIA~al~-r~f~rislGGv~DeaeirGHrrTYvgampGrii~~l~~a~~~nPv~llDEi  425 (784)
T PRK10787        347 IKGPILCLVGPPGVGKTSLGQSIAKATG-RKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEI  425 (784)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHH
T ss_conf             7787799646998772469999999858-986998068878888825643343443683899999974898856650035


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHC---------CCC---EEEEECCCCCCCHHHHHHHHH
Q ss_conf             4222332103689999999999741---------588---699833442221124689999
Q gi|254780711|r  158 DTLEVIPEQSPEKIAIRATQSARDG---------GYD---AVILDTAGRNHINDSLMQEIS  206 (461)
Q Consensus       158 ~~~~~~~~~dp~~i~~~a~~~a~~~---------~~D---~iiiDTaGR~~~d~~lm~El~  206 (461)
                      +=.+.....||++..-+-++.-...         .||   |++|-||--+..-..|.+.|+
T Consensus       426 DK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~~~ip~pLlDRmE  486 (784)
T PRK10787        426 DKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRME  486 (784)
T ss_pred             HHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEEEEEECCCCCCCHHHHHHEE
T ss_conf             5522455899889999845976556400032204645222589973276778767763121


No 272
>smart00178 SAR Sar1p-like members of the Ras-family  of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.48  E-value=0.012  Score=40.33  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf             884189962344333468899999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIA  121 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA  121 (461)
                      ++...|+++|+.||||||-+-+|.
T Consensus        15 ~ke~~ililGLd~aGKTTil~~lk   38 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLK   38 (184)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             661479999658898899999980


No 273
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.48  E-value=0.029  Score=37.45  Aligned_cols=178  Identities=19%  Similarity=0.262  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             99999999871877421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r   76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI  155 (461)
Q Consensus        76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~  155 (461)
                      .-+.++|.+++......-.+..  ...+.++|..-+||.+-.-    .|..   +-.++|+                   
T Consensus       195 ~~~~~~l~~ll~~~~~g~ilr~--G~kvvIiG~PNvGKSSLLN----aL~~---~d~AIVT-------------------  246 (454)
T COG0486         195 EELIAELDELLATAKQGKILRE--GLKVVIIGRPNVGKSSLLN----ALLG---RDRAIVT-------------------  246 (454)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC--CCEEEEECCCCCCHHHHHH----HHHC---CCCEEEC-------------------
T ss_conf             9999999999974442136645--8649998799886799999----8866---7866742-------------------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHH-HHHCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCHHHHH
Q ss_conf             47422233210368999999999-974158869983344222112468999---99985138511000310111225688
Q gi|254780711|r  156 QVDTLEVIPEQSPEKIAIRATQS-ARDGGYDAVILDTAGRNHINDSLMQEI---SEIKSLTNPHEILLVADALTGQDAVH  231 (461)
Q Consensus       156 ~v~~~~~~~~~dp~~i~~~a~~~-a~~~~~D~iiiDTaGR~~~d~~lm~El---~~i~~~~~p~e~~lV~da~~Gq~a~~  231 (461)
                      ++|      |..     ++.++. ..-+++-+.|+||||--..+ +.++.+   +....+-+.|-+++|+|+...-+..+
T Consensus       247 dI~------GTT-----RDviee~i~i~G~pv~l~DTAGiRet~-d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d  314 (454)
T COG0486         247 DIA------GTT-----RDVIEEDINLNGIPVRLVDTAGIRETD-DVVERIGIERAKKAIEEADLVLFVLDASQPLDKED  314 (454)
T ss_pred             CCC------CCC-----CCEEEEEEEECCEEEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHH
T ss_conf             899------974-----103789999898899998567766673-48999999999999985998999970887776011


Q ss_pred             HHHHHHHHCCC---CCEEEEECCCCCCCC-HHHHHHHHHCCCHHHEE--CCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             88988763584---407764115766330-36777888478730261--586723210013688998773586
Q gi|254780711|r  232 LARNFDKIVDL---TGIILTRMDGDGRGG-AALSMRTVTGKPIKAIG--TGEKINDLENFFPDRIANRILGMG  298 (461)
Q Consensus       232 ~a~~F~~~~~i---~giIlTKlD~~akgG-~als~~~~~~~PI~fig--~GE~~~dle~F~p~~~~~riLGmg  298 (461)
                      .  .+-+.++-   .=+|++|.|=..+.= .-+  ....+.|+..++  +||.+++|+.-=-..|-.. ++-.
T Consensus       315 ~--~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~--~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~-~~~~  382 (454)
T COG0486         315 L--ALIELLPKKKPIIVVLNKADLVSKIELESE--KLANGDAIISISAKTGEGLDALREAIKQLFGKG-LGNQ  382 (454)
T ss_pred             H--HHHHHCCCCCCEEEEEECHHCCCCCCCCHH--HCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-CCCC
T ss_conf             7--788724368977999960211564321012--026788269998257657999999999998630-1565


No 274
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=96.46  E-value=0.039  Score=36.53  Aligned_cols=115  Identities=24%  Similarity=0.258  Sum_probs=73.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             43334688999999998614895078205422100477999985103474222332103689999999999741588699
Q gi|254780711|r  109 QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVI  188 (461)
Q Consensus       109 ~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~ii  188 (461)
                      +|+|||...+-|+++++. .|++|...     .|-                                      +.||+++
T Consensus         8 T~VGKT~vt~~l~~~l~~-~G~~v~~~-----KPv--------------------------------------~t~D~vl   43 (134)
T cd03109           8 TDIGKTVATAILARALKE-KGYRVAPL-----KPV--------------------------------------QTYDFVL   43 (134)
T ss_pred             CCCCHHHHHHHHHHHHHH-CCCCEEEE-----CHH--------------------------------------HCCCEEE
T ss_conf             887689999999999997-79917787-----566--------------------------------------7279899


Q ss_pred             EECCCCCCC--H-HHHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHHHHHHHH-HHHCCCCCEEEEECCCCCC--CCHHH
Q ss_conf             833442221--1-2468999999851385110003101112--2568888988-7635844077641157663--30367
Q gi|254780711|r  189 LDTAGRNHI--N-DSLMQEISEIKSLTNPHEILLVADALTG--QDAVHLARNF-DKIVDLTGIILTRMDGDGR--GGAAL  260 (461)
Q Consensus       189 iDTaGR~~~--d-~~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~~~a~~F-~~~~~i~giIlTKlD~~ak--gG~al  260 (461)
                      |.-||-...  + +.++..+   .+..+ ..++||.++-.|  ..++-.+++- +..+++-|+|+...+.+.-  --.+-
T Consensus        44 VEGaGG~~vPl~~~~~~~Dl---~~~l~-~pvIlV~~~~LG~INhtlLt~eal~~~gi~v~G~i~N~~~~~~~~~~~N~~  119 (134)
T cd03109          44 VEGAGGLCVPLKEDFTNADV---AKELN-LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNVE  119 (134)
T ss_pred             EECCCCEEECCCCCCCHHHH---HHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf             98897746003898629999---99709-998999778878589999999999987992889999467997106787599


Q ss_pred             HHHHHHCCCHH
Q ss_conf             77888478730
Q gi|254780711|r  261 SMRTVTGKPIK  271 (461)
Q Consensus       261 s~~~~~~~PI~  271 (461)
                      .+...++.|+.
T Consensus       120 ~I~~~t~vPvL  130 (134)
T cd03109         120 TIERLTGIPVL  130 (134)
T ss_pred             HHHHHHCCCEE
T ss_conf             99997499977


No 275
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.46  E-value=0.04  Score=36.43  Aligned_cols=198  Identities=17%  Similarity=0.241  Sum_probs=99.0

Q ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             25884189962344333468899999999861489507820542210047799998510347422233210368999999
Q gi|254780711|r   96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA  175 (461)
Q Consensus        96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a  175 (461)
                      .-..|.=|||.||.|+|||..+--+|..+.    ....-+.       +-+=            +..+.|. ....+++.
T Consensus       162 Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~----~~fi~v~-------~s~l------------~sk~vGe-sek~vr~l  217 (390)
T PRK03992        162 GIEPPKGVLLYGPPGTGKTLLAKAVAHETN----ATFIRVV-------GSEL------------VQKFIGE-GARLVREL  217 (390)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHC----CCEEEEE-------HHHH------------HHCCCCH-HHHHHHHH
T ss_conf             999997278689899978999999998748----8879966-------7997------------5245417-99999999


Q ss_pred             HHHHHHCCCCEEEEECC---C--CC--------CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC
Q ss_conf             99997415886998334---4--22--------21124689999998513851100031011122568888988763584
Q gi|254780711|r  176 TQSARDGGYDAVILDTA---G--RN--------HINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDL  242 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTa---G--R~--------~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i  242 (461)
                      .+.|+...--+|+||-.   |  |.        ..+.-+++=|..+.. ..+..-++|+-||.--+.++-|-.  ..=-+
T Consensus       218 F~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG-~~~~~~V~VIaATNrpd~LDpAll--RpGRF  294 (390)
T PRK03992        218 FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG-FDPRGNVKIIAATNRPDILDPALL--RPGRF  294 (390)
T ss_pred             HHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCEEEEEECCCCHHCCHHHH--CCCCC
T ss_conf             999997099089714325663356778886208899999999997448-777788279960698100597775--47765


Q ss_pred             CCEEEE-ECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             407764-1157663303677788847873026158672321001368899877358--6278899987421126789988
Q gi|254780711|r  243 TGIILT-RMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM--GDVVSLVEKAARNLNEKQAALT  319 (461)
Q Consensus       243 ~giIlT-KlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm--gD~~~l~e~~~~~~d~~~~~~l  319 (461)
                      +..|-- --|..+|- .+|.+ +.-+.|+     .      +..+-+.+|.+--|+  .|+..++..|--         .
T Consensus       295 Dr~I~iplPd~~~R~-~Ilki-~~~~~~l-----~------~dvdl~~lA~~T~G~SGADI~~lc~EA~m---------~  352 (390)
T PRK03992        295 DRIIEVPLPDEEGRL-EILKI-HTRKMNL-----A------DDVDLEELAELTEGASGADLKAICTEAGM---------F  352 (390)
T ss_pred             CEEEEECCCCHHHHH-HHHHH-HHCCCCC-----C------CCCCHHHHHHHCCCCCHHHHHHHHHHHHH---------H
T ss_conf             238870894999999-99999-8479999-----9------88899999976879989999999999999---------9


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf             86531046379999999999851
Q gi|254780711|r  320 AKKIAKGKFDLEDLAEQFRQTQK  342 (461)
Q Consensus       320 ~~k~~~g~F~l~Df~~Ql~~i~k  342 (461)
                      +-+=.....+.+||.+-++.+..
T Consensus       353 Air~~r~~i~~~Df~~Ai~kv~~  375 (390)
T PRK03992        353 AIRDDRTEVTMEDFLKAIEKVMG  375 (390)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHC
T ss_conf             99858986089999999999967


No 276
>PRK10436 hypothetical protein; Provisional
Probab=96.46  E-value=0.0053  Score=43.13  Aligned_cols=208  Identities=17%  Similarity=0.105  Sum_probs=94.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054--2210047799998510347422233210368999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD--VHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D--t~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      -.|+++||+|||||||..-+-.++.. .++++.-+. |  -|+...+.|.+...          ..+.+-+    .++..
T Consensus       216 GliLvtGPTGSGKTTTLya~L~~l~~-~~~~I~TiE-DPVE~~l~gi~Q~~vn~----------~~g~tfa----~~lrs  279 (461)
T PRK10436        216 GLVLVTGPTGSGKTVTLYSALQTLNT-AQINICSVE-DPVEIPLAGINQTQIHP----------RAGLTFQ----RVLRA  279 (461)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEE-CCCCCCCCCCCCCEECC----------CCCHHHH----HHHHH
T ss_conf             77999789999569999999974346-771699960-77435546754523132----------2131399----99999


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC---------CCCEEEEE
Q ss_conf             974158869983344222112468999999851385110003101112256888898876358---------44077641
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD---------LTGIILTR  249 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~---------i~giIlTK  249 (461)
                      +-.+.-|+|+|.---    |.+-.+  ..+..+..-   +||+...--.+|......+.+ .+         +.|||--+
T Consensus       280 ~LRqDPDVImvGEIR----D~eTA~--~Ai~AAlTG---HLVlsTlHtnda~~ai~RL~~-mgi~~~lla~~L~~ViaQR  349 (461)
T PRK10436        280 LLRQDPDVIMVGEIR----DGETAE--IAIKAAQTG---HLVLSTLHTNSTSETLIRLQQ-MGVARWMISSALTLVIAQR  349 (461)
T ss_pred             HHCCCCCEEEECCCC----CHHHHH--HHHHHHHHC---CEEEEEECCCCHHHHHHHHHH-CCCCHHHHHHHHHHEEECC
T ss_conf             874699999865778----899999--999999719---848898626977889999998-3998889998663347750


Q ss_pred             C----CCCCC-------------CCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHH-HHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             1----57663-------------303677788847873026158672321001368-89987735862788999874211
Q gi|254780711|r  250 M----DGDGR-------------GGAALSMRTVTGKPIKAIGTGEKINDLENFFPD-RIANRILGMGDVVSLVEKAARNL  311 (461)
Q Consensus       250 l----D~~ak-------------gG~als~~~~~~~PI~fig~GE~~~dle~F~p~-~~~~riLGmgD~~~l~e~~~~~~  311 (461)
                      |    -.+-|             ....+......|+|-.+-|.--+.-=+|.+..+ .+...|..-.+...+.+.|.+.=
T Consensus       350 LVR~LCp~Ck~~~~~~~~~~~~~~~~~~~~~~~~GC~~C~tGY~GR~~i~Evl~~d~~ir~~I~~~~~~~~i~~~a~~~G  429 (461)
T PRK10436        350 LVRKLCPHCRQQQSEPVHLPANIWPSPLPHWQAVGCEHCYHGFYGRTALFEVLPVTPAIRQLIASNASPEELETHARQQG  429 (461)
T ss_pred             CCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             34323733278667542101330434332025788733389988601899998389999999983999999999999869


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             26789988865310463799999
Q gi|254780711|r  312 NEKQAALTAKKIAKGKFDLEDLA  334 (461)
Q Consensus       312 d~~~~~~l~~k~~~g~F~l~Df~  334 (461)
                      -..=.+.-.+++..|.-|++..+
T Consensus       430 m~tl~~~g~~kv~~G~Ts~eEv~  452 (461)
T PRK10436        430 MTTLFENGCLAVEQGLTTLEEII  452 (461)
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             92299999999985999899999


No 277
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=96.46  E-value=0.011  Score=40.68  Aligned_cols=135  Identities=18%  Similarity=0.294  Sum_probs=72.3

Q ss_pred             CCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHH-
Q ss_conf             884-189962344333468899999999861489507820542210047799998510347422233--2103689999-
Q gi|254780711|r   98 PSP-LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI--PEQSPEKIAI-  173 (461)
Q Consensus        98 ~~p-~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~--~~~dp~~i~~-  173 (461)
                      .+| ..|.++|---+||||.++-|.+-   . |. +     |   ...+++++.-++..|-+-+...  ....|.+-.+ 
T Consensus         4 ~K~~l~i~~~GhVD~GKSTL~G~Ll~~---~-g~-~-----~---~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rG   70 (426)
T PRK12317          4 EKPHLNLAVIGHVDHGKSTLVGRLLYE---T-GA-V-----D---EHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERG   70 (426)
T ss_pred             CCCEEEEEEEEECCCCHHHHHHHHHHH---C-CC-C-----C---HHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCC
T ss_conf             897849999952287688887689877---2-99-4-----4---89999999899864877521432125786687558


Q ss_pred             ----HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHHHHHHH---HHHHCCCCC
Q ss_conf             ----9999997415886998334422211246899999985138511000310111--2256888898---876358440
Q gi|254780711|r  174 ----RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAVHLARN---FDKIVDLTG  244 (461)
Q Consensus       174 ----~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~~~a~~---F~~~~~i~g  244 (461)
                          -+..++...++.+.|||++|--..=.++      +..+..+|-.+||+||.-  |-.  .|.+.   -...+++..
T Consensus        71 iTid~~~~~f~~~~~~~~iiD~PGH~~fi~nm------i~Gas~~D~ailvV~A~~~~G~~--~QT~eHl~l~~~lgi~~  142 (426)
T PRK12317         71 VTIDLAHKKFETDKYYFTIIDCPGHRDFVKNM------ITGASQADAAVLVVSARDAGGVM--PQTREHVFLARTLGINQ  142 (426)
T ss_pred             CEEEEEEEEEECCCCEEEEEECCCCHHHHHHH------HHHHCCCCEEEEEEECCCCCCCC--HHHHHHHHHHHHHCCCE
T ss_conf             27883169995498169998789636678778------74534677279999636566764--77899999999809983


Q ss_pred             -E-EEEECCCC
Q ss_conf             -7-76411576
Q gi|254780711|r  245 -I-ILTRMDGD  253 (461)
Q Consensus       245 -i-IlTKlD~~  253 (461)
                       + .+||+|-.
T Consensus       143 iiV~vnKmD~v  153 (426)
T PRK12317        143 LIVAINKMDAV  153 (426)
T ss_pred             EEEEEECCCCC
T ss_conf             99999533356


No 278
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.46  E-value=0.037  Score=36.69  Aligned_cols=201  Identities=15%  Similarity=0.206  Sum_probs=97.7

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC--------
Q ss_conf             100025884189962344333468899999999861489507820542210047799998510347422233--------
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI--------  163 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~--------  163 (461)
                      .+...++  .++.++|+|||||||.+--|+..++-..| +|.+-..|...-..-..++.+.+++++=| ..+        
T Consensus        27 sl~I~~G--e~~aiiG~nGsGKSTLl~~l~GLl~p~~G-~I~~~g~~i~~~~~~~~~~~~r~~ig~Vf-Q~P~~ql~~~t  102 (286)
T PRK13646         27 NTEFEQG--KYYAIVGQTGSGKSTLIQNINALLKPTTG-TVTVDDITITHKTKDKYIRPVRKRIGMVF-QFPESQLFEDT  102 (286)
T ss_pred             EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHHHHHCEEEEE-ECCHHHHHHHH
T ss_conf             7798699--89999999998199999999707888887-59999898755574678999874089999-88402220778


Q ss_pred             -----------CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHHH
Q ss_conf             -----------2103689999999999741588699833442221--12468999999851385110003101-112256
Q gi|254780711|r  164 -----------PEQSPEKIAIRATQSARDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADA-LTGQDA  229 (461)
Q Consensus       164 -----------~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~a  229 (461)
                                 .+-++.++..++.+....-+..   -|-..|.+.  ... ..+--.|..++--+--+|++|= ++|.|.
T Consensus       103 V~~~i~fg~~~~g~~~~e~~~r~~~~l~~~gl~---~~~~~~~p~~LSGG-qkqRVaiA~aLa~~P~iLilDEPTagLDp  178 (286)
T PRK13646        103 VEREMIFGPKNFKMNLDEAKNYAHRLLMDLGFS---RDVMSQSPFQMSGG-QMRKIAIVSILAMNPDIIVVDEPTAGLDP  178 (286)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC---HHHHHCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf             999998679777999999999999999984994---75775694329999-99999999998519899998387443898


Q ss_pred             HH------HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCC-CHHHHHHHHHCCCC
Q ss_conf             88------88988763584407764115766330367778884787302615867232---1001-36889987735862
Q gi|254780711|r  230 VH------LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENF-FPDRIANRILGMGD  299 (461)
Q Consensus       230 ~~------~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F-~p~~~~~riLGmgD  299 (461)
                      ..      ..+..++..+.|=+++|-=         +..+...---|..+..|+-+.+   -|.| +|+.+.+.=|....
T Consensus       179 ~~~~~i~~ll~~l~~~~g~TiI~iTHd---------m~~v~~~adrv~vm~~G~Iv~~G~p~evf~~~~~l~~~~l~~P~  249 (286)
T PRK13646        179 QSKRQVMRLLKSLQTDENKAIILISHD---------MNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLPE  249 (286)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCC---------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCH
T ss_conf             999999999999999539899999138---------99999969999999898999977899997796579878999984


Q ss_pred             HHHHHHHHHH
Q ss_conf             7889998742
Q gi|254780711|r  300 VVSLVEKAAR  309 (461)
Q Consensus       300 ~~~l~e~~~~  309 (461)
                      +..|....++
T Consensus       250 ~~~l~~~l~~  259 (286)
T PRK13646        250 IVQLQYDFEQ  259 (286)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998


No 279
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.45  E-value=0.021  Score=38.61  Aligned_cols=198  Identities=16%  Similarity=0.171  Sum_probs=94.7

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             10002588418996234433346889999999986148950782054221004779999851034742223321036899
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKI  171 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i  171 (461)
                      .+...++  -++.++|.|||||||++-=|+..+....| +|.+-.-|+..    ..+..+.++++. +|..+...-+...
T Consensus        27 s~~i~~G--e~~aiiG~sGsGKSTL~~~l~Gl~~~~~G-~I~~~G~~i~~----~~~~~~r~~ig~-VfQ~p~~~l~~~t   98 (277)
T PRK13642         27 SFSITKG--EWVSIIGQNGSGKSTTARLIDGLFEEFEG-IVKIDGERLTA----ENVWNLRRKIGM-VFQNPDNQFVGAT   98 (277)
T ss_pred             EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCC----CCHHHHHCCCEE-EEECCCCCCCCCC
T ss_conf             7998899--89999999996899999999638998884-89999999985----788888517689-9989763257550


Q ss_pred             HHHHHHHHHHC-CC--------------CEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHHH
Q ss_conf             99999999741-58--------------8699833442221124-6899999985138511000310-111225688889
Q gi|254780711|r  172 AIRATQSARDG-GY--------------DAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLAR  234 (461)
Q Consensus       172 ~~~a~~~a~~~-~~--------------D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a~  234 (461)
                      +++-+.+...+ ++              .+=+.|-..|.+.+=. =..+--.|..+.-.+--+|++| .++|.|...+.+
T Consensus        99 V~e~i~~g~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~P~~LSGGqrQRvaIA~aLa~~P~ililDEPTs~LD~~~~~~  178 (277)
T PRK13642         99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRSE  178 (277)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf             88889877766699999999999999987799656557912289999999999999966999999958876589899999


Q ss_pred             HH------HHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCC-CHHHHHHHHHCCCCHHHHH
Q ss_conf             88------763584407764115766330367778884787302615867232---1001-3688998773586278899
Q gi|254780711|r  235 NF------DKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENF-FPDRIANRILGMGDVVSLV  304 (461)
Q Consensus       235 ~F------~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F-~p~~~~~riLGmgD~~~l~  304 (461)
                      .+      ++..++|-+++|- |        +..+.. ---|.++--|+-+.+   =|.| +|+.+...=|--..+..|.
T Consensus       179 i~~ll~~L~~~~~~Tii~iTH-d--------l~~~~~-aDrv~vm~~G~Iv~~G~~~evf~~p~~l~~~~l~~P~~~~l~  248 (277)
T PRK13642        179 IMRVIHEIKDKYHLTVLSITH-D--------LDEAAS-SDRILVMRAGEIIKEAAPSELFATSEDMVEIGLDVPFSSNLM  248 (277)
T ss_pred             HHHHHHHHHHHCCCEEEEEEE-C--------HHHHHH-CCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHH
T ss_conf             999999999816989999945-8--------899971-998999989999997689998769677987799998799999


Q ss_pred             HHH
Q ss_conf             987
Q gi|254780711|r  305 EKA  307 (461)
Q Consensus       305 e~~  307 (461)
                      ++.
T Consensus       249 ~~L  251 (277)
T PRK13642        249 KDL  251 (277)
T ss_pred             HHH
T ss_conf             999


No 280
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.44  E-value=0.11  Score=32.96  Aligned_cols=219  Identities=16%  Similarity=0.182  Sum_probs=92.1

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCCHHHHHHH
Q ss_conf             88418996234433346889999999986148950782054221004779999851034742223----32103689999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV----IPEQSPEKIAI  173 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~i~~  173 (461)
                      .-++.++|+|+.|+||||++-=||+.+--..|-  ---.|.+     -+--+...+---++++..    ..+-|-..-..
T Consensus        36 r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~--~~~pcg~-----c~~c~~i~~g~~~d~~eidaas~~~vd~~rel~  108 (643)
T PRK07994         36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--TATPCGV-----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL  108 (643)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             866348745899888889999999996799999--9997876-----776898865898875886367778889999999


Q ss_pred             HHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH----------
Q ss_conf             9999997-415886998334422211246899999985138511000310111225-----688889887----------
Q gi|254780711|r  174 RATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD----------  237 (461)
Q Consensus       174 ~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~----------  237 (461)
                      +.+.|+- ...|-|.|||-.-.+....  +.-|-+..+. .|.++.|++ |+|.-+     .+.-+..|+          
T Consensus       109 ~~~~y~p~~~r~kvyiidEvhmls~~a--fnalLKtlEe-Pp~hv~fil-aTT~~~k~p~TilSRC~~f~~~~~~~~~i~  184 (643)
T PRK07994        109 DNVQYAPARGRFKVYLIDEVHMLSRHS--FNALLKTLEE-PPAHVKFLL-ATTDPQKLPVTILSRCLQFHLKALDVEQIR  184 (643)
T ss_pred             HHCCCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHHCC-CCHHCEEEE-ECCCHHHCCHHHHHHHHHEECCCCCHHHHH
T ss_conf             844668877853699972210158999--9999986237-861008998-607745484789977765001669999999


Q ss_pred             ---------HHCCCCCEEEEECCCCCCCC--HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf             ---------63584407764115766330--3677788847873026158672321001368899877358627889998
Q gi|254780711|r  238 ---------KIVDLTGIILTRMDGDGRGG--AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEK  306 (461)
Q Consensus       238 ---------~~~~i~giIlTKlD~~akgG--~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~  306 (461)
                               +.+.++---+..+--.|.|+  -+||+...   -|.| |.|. ++       +.-+..+||.-|---+++-
T Consensus       185 ~~l~~i~~~e~i~~~~~al~~ia~~a~gs~rdalsl~dq---~i~~-~~~~-~~-------~~~v~~mlg~~d~~~~~~l  252 (643)
T PRK07994        185 HQLEHILNEEHIAHEPRALQLLARAADGSLRDALSLTDQ---AIAS-GDGQ-VS-------TQAVSAMLGTLDDDQALSL  252 (643)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH---HHHH-CCCC-CC-------HHHHHHHHCCCCHHHHHHH
T ss_conf             999999997599878899999999747865668889999---9986-5897-47-------9999998589987899999


Q ss_pred             HHHHHHHHHH--HHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             7421126789--98886531046379999999999
Q gi|254780711|r  307 AARNLNEKQA--ALTAKKIAKGKFDLEDLAEQFRQ  339 (461)
Q Consensus       307 ~~~~~d~~~~--~~l~~k~~~g~F~l~Df~~Ql~~  339 (461)
                      .....+.+-.  -...+++..-.-+|+.++..+-.
T Consensus       253 l~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~  287 (643)
T PRK07994        253 VEALVEANGERVMALINEAAARGIEWEALLVEMLS  287 (643)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999569999999999999868899999999999


No 281
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.44  E-value=0.022  Score=38.40  Aligned_cols=86  Identities=19%  Similarity=0.176  Sum_probs=61.4

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      ..=+.+.|..|+|||--+|-+|+.+.+ .|.+|.++...+|    +..|+.-        |.....       .+-++..
T Consensus       157 ~kGlyl~G~~G~GKTyL~~aian~La~-~g~~v~~v~~p~~----~~~lK~s--------~~d~s~-------~~~i~~~  216 (306)
T PRK08939        157 VKGLYLYGDFGVGKTYLLAAIANELAK-KGVSSTLVHFPEF----IRELKNA--------ISDGSV-------KEKIDAV  216 (306)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEHHHH----HHHHHHH--------HCCCCH-------HHHHHHH
T ss_conf             877889899999899999999999998-6992999875999----9999998--------648988-------9999998


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             7415886998334422211246899999
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISE  207 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~  207 (461)
                      +  .+|++++|--|--....+..+|+-.
T Consensus       217 k--~~~vLiLDDiGaE~~t~W~rd~vl~  242 (306)
T PRK08939        217 K--EAPVLMLDDIGAEQMSSWVRDEVLG  242 (306)
T ss_pred             H--CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf             4--4998998444654267778998999


No 282
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.43  E-value=0.0057  Score=42.88  Aligned_cols=72  Identities=26%  Similarity=0.406  Sum_probs=50.7

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      +.+|-+||-.||||||.+.||...|+. +|.+|+.+=-|.++             ..+    ..+++|.-.        +
T Consensus         1 mkii~ivG~snSGKTTLi~kli~~l~~-~G~~V~~iKH~~H~-------------f~~----D~~GkDS~r--------~   54 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPALSA-RGLRVAVIKHDHHD-------------FDI----DTPGKDSYR--------H   54 (159)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCC-------------CCC----CCCCCHHHH--------H
T ss_conf             929999967999999999999999997-79859899734767-------------777----789844177--------6


Q ss_pred             HHCCCCEEEEECCCCCCC
Q ss_conf             741588699833442221
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHI  197 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~  197 (461)
                      +.-+.+.++|=+++|...
T Consensus        55 ~~AGA~~v~v~s~~~~~l   72 (159)
T cd03116          55 REAGAEEVLVSSPRRWAL   72 (159)
T ss_pred             HHCCCCEEEEECCCEEEE
T ss_conf             752973799975671887


No 283
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=96.41  E-value=0.044  Score=36.07  Aligned_cols=28  Identities=36%  Similarity=0.563  Sum_probs=23.6

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             23443334688999999998614895078
Q gi|254780711|r  106 VGLQGSGKTTTTAKIAYHLKTLKKKKILM  134 (461)
Q Consensus       106 vGl~GsGKTTT~aKLA~~~~~~~~~kV~l  134 (461)
                      =|+-||||||-+..|+.+|.. .|.+|.+
T Consensus         2 EGiDGsGKsTq~~~L~~~L~~-~g~~v~~   29 (186)
T pfam02223         2 EGLDGAGKTTQAELLKERLKE-QGIKVVL   29 (186)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH-CCCEEEE
T ss_conf             799998999999999999998-7990899


No 284
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.40  E-value=0.0039  Score=44.13  Aligned_cols=43  Identities=23%  Similarity=0.314  Sum_probs=38.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf             9623443334688999999998614895078205422100477
Q gi|254780711|r  104 MLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE  146 (461)
Q Consensus       104 llvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e  146 (461)
                      +++||.|+||||-+-.|..++....|..|++|+-|-+.|.++.
T Consensus         3 VLcGLPaAGKTTLar~L~~~l~~~~gw~v~vI~YDdlIp~~~~   45 (340)
T TIGR03575         3 VLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAF   45 (340)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHH
T ss_conf             4326987873689999999986444760589862121425453


No 285
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=96.39  E-value=0.049  Score=35.75  Aligned_cols=121  Identities=17%  Similarity=0.262  Sum_probs=65.8

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      +.-.|.++|..-|||.|-+-.|.       |.++.+|+-   +|+        ..+-.+  .+..               
T Consensus         7 ksG~VaivG~PNvGKSTL~N~l~-------~~k~siVS~---k~~--------TTR~~i--~gi~---------------   51 (296)
T PRK00089          7 KSGFVAIVGRPNVGKSTLLNALV-------GQKISIVSP---KPQ--------TTRHRI--RGIV---------------   51 (296)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHH-------CCCEEEECC---CCC--------CCCCCE--EEEE---------------
T ss_conf             37999999899988899999996-------896176149---599--------872838--9999---------------


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC-CCCCCCCCCCHHCCH--HHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             97415886998334422211246899999-98513-851100031011122--568888988763584407764115766
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISE-IKSLT-NPHEILLVADALTGQ--DAVHLARNFDKIVDLTGIILTRMDGDG  254 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~-i~~~~-~p~e~~lV~da~~Gq--~a~~~a~~F~~~~~i~giIlTKlD~~a  254 (461)
                       ...++.++++||+|-+.....+-+.+.+ ...++ ..|-++||+||..+-  +....++...+.----=++++|.|--.
T Consensus        52 -~~~~~q~i~iDTpGi~~~~~~l~~~~~~~~~~ai~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNKiDlv~  130 (296)
T PRK00089         52 -TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVD  130 (296)
T ss_pred             -EECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCC
T ss_conf             -9799799999899866746778789999999999759999999857889898899999988874998899954788428


Q ss_pred             C
Q ss_conf             3
Q gi|254780711|r  255 R  255 (461)
Q Consensus       255 k  255 (461)
                      +
T Consensus       131 k  131 (296)
T PRK00089        131 K  131 (296)
T ss_pred             H
T ss_conf             9


No 286
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=96.39  E-value=0.025  Score=38.05  Aligned_cols=144  Identities=20%  Similarity=0.247  Sum_probs=77.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      +|.++|-.-|||.|-.-+|.       +++.++|+ |+               -|+.-       |...      ..+.-
T Consensus         3 ~VaIvGrpNvGKStLfN~l~-------~~~~aIv~-~~---------------~G~TR-------D~~~------~~~~~   46 (438)
T PRK00093          3 VVAIVGRPNVGKSTLFNRLT-------GKRDAIVA-DT---------------PGVTR-------DRIY------GEAEW   46 (438)
T ss_pred             EEEEECCCCCCHHHHHHHHH-------CCCEEEEC-CC---------------CCCCC-------CCEE------EEEEE
T ss_conf             89998999987899999986-------88618715-98---------------99984-------7158------99999


Q ss_pred             CCCCEEEEECCCCCCCHHH-HHHHHH-HHHHHC-CCCCCCCCCCHHCC--HHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             1588699833442221124-689999-998513-85110003101112--256888898876358440776411576633
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDS-LMQEIS-EIKSLT-NPHEILLVADALTG--QDAVHLARNFDKIVDLTGIILTRMDGDGRG  256 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~-lm~El~-~i~~~~-~p~e~~lV~da~~G--q~a~~~a~~F~~~~~i~giIlTKlD~~akg  256 (461)
                      .++.+.||||||-...+.+ +.+.+. +...++ +.|-++||+||..|  .+-.+.|+-..+.-.--=+++-|+|+....
T Consensus        47 ~~~~~~lvDT~G~~~~~~~~~~~~i~~q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~~  126 (438)
T PRK00093         47 LGREFIVIDTGGIDPGDEDGFEKQMREQALLAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGKKME  126 (438)
T ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf             99289999897989888207999999999999985899999983776898789999999997399789999755663203


Q ss_pred             CHHHHHHHHHCCC-HHHEE--CCCCCCCC
Q ss_conf             0367778884787-30261--58672321
Q gi|254780711|r  257 GAALSMRTVTGKP-IKAIG--TGEKINDL  282 (461)
Q Consensus       257 G~als~~~~~~~P-I~fig--~GE~~~dl  282 (461)
                      - ..+=.+..|.. +.+|+  .|..++||
T Consensus       127 ~-~~~ef~~LGf~~~i~iSA~h~~Gi~~L  154 (438)
T PRK00093        127 A-DAYEFYSLGLGEPYPISAEHGRGIGDL  154 (438)
T ss_pred             H-HHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf             4-599999836898188853056698999


No 287
>PRK00007 elongation factor G; Reviewed
Probab=96.39  E-value=0.013  Score=40.25  Aligned_cols=136  Identities=21%  Similarity=0.229  Sum_probs=71.3

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE-----CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             418996234433346889999999986148950782-----054221004779999851034742223321036899999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMA-----SLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR  174 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv-----~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~  174 (461)
                      -.-|.++|--++||||.+=.|-++--.  -.+.+=|     .+|.   -..||-+      ++.+.+.     ++.+.+ 
T Consensus        10 IRNi~IiaHvd~GKTTL~e~lL~~sg~--i~~~G~v~~g~t~~D~---~~~E~eR------gITI~s~-----~~s~~~-   72 (693)
T PRK00007         10 YRNIGIMAHIDAGKTTTTERILFYTGV--SHKIGEVHDGAATMDW---MEQEQER------GITITSA-----ATTCFW-   72 (693)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC--CCCCCEECCCCCCCCC---CHHHHHC------CCCEEEC-----EEEEEE-
T ss_conf             709999916999989999999996698--4658424389855678---2889976------9887322-----254882-


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHHHHCCCCCEEEEE
Q ss_conf             999997415886998334422211246899999985138511000310111225-----688889887635844077641
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFDKIVDLTGIILTR  249 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~~~~~i~giIlTK  249 (461)
                            ...|-+=||||.|-  .|  -..|...-.+++  |-.++|+||.-|=.     ...+|...  .++ .=+++.|
T Consensus        73 ------~~~~~iNlIDTPGH--vD--F~~Ev~~aLrv~--DgAvlVvDav~GV~~qT~~v~r~a~~~--~lp-~i~fINK  137 (693)
T PRK00007         73 ------KDGHRINIIDTPGH--VD--FTIEVERSLRVL--DGAVAVFCAVGGVEPQSETVWRQADKY--KVP-RIVFVNK  137 (693)
T ss_pred             ------CCCEEEEEEECCCC--CC--HHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHHHHHC--CCC-EEEEEEC
T ss_conf             ------69738999919797--52--489999999985--868999988988777799999999875--989-6999979


Q ss_pred             CCCC-CCCCHHH-HHHHHHC
Q ss_conf             1576-6330367-7788847
Q gi|254780711|r  250 MDGD-GRGGAAL-SMRTVTG  267 (461)
Q Consensus       250 lD~~-akgG~al-s~~~~~~  267 (461)
                      +|-. |..-..+ ++....+
T Consensus       138 ~Dr~~ad~~~~l~~i~~~l~  157 (693)
T PRK00007        138 MDRTGADFLRVVEQIKDRLG  157 (693)
T ss_pred             CCCCCCCHHHHHHHHHHHHC
T ss_conf             77899998999999999859


No 288
>KOG2749 consensus
Probab=96.39  E-value=0.079  Score=34.17  Aligned_cols=183  Identities=14%  Similarity=0.168  Sum_probs=100.4

Q ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC-----HHHHHH-------HHHHHCCCCCCC---
Q ss_conf             25884189962344333468899999999861489507820542210-----047799-------998510347422---
Q gi|254780711|r   96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP-----AAQEQL-------RYLGEQIQVDTL---  160 (461)
Q Consensus        96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~-----aA~eQL-------~~~a~~~~v~~~---  160 (461)
                      +..+| .+|+||+.-+||||-|-=|.+|..++ |++++.|..|.-.+     |++--.       -+++-.+..|..   
T Consensus       100 ~~~GP-rv~vVGp~d~GKsTl~r~L~nyavk~-gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~l~~pLV~~F  177 (415)
T KOG2749         100 SSYGP-RVMVVGPTDVGKSTLCRILLNYAVKQ-GRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNF  177 (415)
T ss_pred             HCCCC-EEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCCEECCCCHHHEECCCCCCHHHCCCCCCCEEEEC
T ss_conf             02597-79998987656678999999999871-78653897479997244254222021023243431765688526632


Q ss_pred             CCCCCCHHHHHHHHH----HHHH--------HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH
Q ss_conf             233210368999999----9999--------7415886998334422211246899999985138511000310111225
Q gi|254780711|r  161 EVIPEQSPEKIAIRA----TQSA--------RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD  228 (461)
Q Consensus       161 ~~~~~~dp~~i~~~a----~~~a--------~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~  228 (461)
                      +.....+-.++ +++    +..+        +.-...=.||||.|-.. .+. .++|-.+.+..+-+ +++|++    |+
T Consensus       178 G~~sp~~N~~L-Y~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i~-~eg-y~~llhai~~f~v~-vviVLg----~E  249 (415)
T KOG2749         178 GLTSPSTNLEL-YKALVSELAEVLKQRLSLNPEARVSGCIINTCGWIE-GEG-YAALLHAIKAFEVD-VVIVLG----QE  249 (415)
T ss_pred             CCCCCCCCHHH-HHHHHHHHHHHHHHHHCCCCHHCCCCEEEECCCEEC-CCC-HHHHHHHHHHCCCC-EEEEEC----CH
T ss_conf             68998768899-999999999999987425811100554871263141-555-89999999970764-899966----47


Q ss_pred             H-H-HHHHHHHHHCCCCCEEEEECCC-CCCCCHHHHHHHHHCCCHHHEE----------CCCCCCCCCCCCHH
Q ss_conf             6-8-8889887635844077641157-6633036777888478730261----------58672321001368
Q gi|254780711|r  229 A-V-HLARNFDKIVDLTGIILTRMDG-DGRGGAALSMRTVTGKPIKAIG----------TGEKINDLENFFPD  288 (461)
Q Consensus       229 a-~-~~a~~F~~~~~i~giIlTKlD~-~akgG~als~~~~~~~PI~fig----------~GE~~~dle~F~p~  288 (461)
                      - . +.-+.+...-++.-+-+.|.+| -+|-+-.-.-.....+-=+|.|          .+=+++|+.++.+-
T Consensus       250 rLy~~lkk~~~~~~~v~vv~lpKsgGv~~Rs~~~r~~~r~~~I~eYFYG~~~~~lsP~t~~Vkf~Dl~v~rig  322 (415)
T KOG2749         250 RLYSSLKKDLPPKKNVRVVKLPKSGGVVARSKEVRRKLRGRSIREYFYGSVRNELSPFTFNVKFSDLTVYRIG  322 (415)
T ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEEEEC
T ss_conf             8889987652655552489842778858504889998863118875136557764633675111157999806


No 289
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=96.39  E-value=0.0059  Score=42.77  Aligned_cols=38  Identities=32%  Similarity=0.425  Sum_probs=31.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-EECCCCC
Q ss_conf             89962344333468899999999861489507-8205422
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-MASLDVH  140 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~-lv~~Dt~  140 (461)
                      ++|+||..++||||.+-.|++|+.++ |++|. ++-+|.-
T Consensus         2 ~v~i~G~~~sGKttl~~~L~~~~~~~-g~~~~~~~~~d~g   40 (122)
T pfam03205         2 IVLVVGPKDSGKTTLIRKLLNYLKRR-GYRVAVVKHLDHG   40 (122)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCC
T ss_conf             79999489998999999999999987-9944899989999


No 290
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.39  E-value=0.013  Score=40.22  Aligned_cols=91  Identities=20%  Similarity=0.219  Sum_probs=51.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH------HHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             996234433346889999999986148950782054221004779------99985103474222332103689999999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ------LRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ------L~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      |+++|+.||||||-+.+||.+|    +. +-+.+.|..|..+-.+      ++.+-.+ |-.    .+......++.+.+
T Consensus         2 i~l~G~PGsGKgTqa~~La~~~----~~-~~is~gdlLR~~~~~~t~~g~~i~~~~~~-G~l----vp~~i~~~l~~~~l   71 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY----GL-PHISTGDLLREEIASGTELGKKAKEYIDS-GKL----VPDEIVIKLLKERL   71 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH----CC-EEECHHHHHHHHHHCCCHHHHHHHHHHHC-CCC----CCHHHHHHHHHHHH
T ss_conf             8998999998799999999997----98-46768899999997499589999999987-997----78999999999998


Q ss_pred             HHHHHCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             99974158869983344222112468999
Q gi|254780711|r  177 QSARDGGYDAVILDTAGRNHINDSLMQEI  205 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El  205 (461)
                      ....  ...-+|+|---|......+++++
T Consensus        72 ~~~~--~~~g~ilDGfPR~~~Qa~~l~~~   98 (194)
T cd01428          72 KKPD--CKKGFILDGFPRTVDQAEALDEL   98 (194)
T ss_pred             HCCC--CCCCEEEECCCCCHHHHHHHHHH
T ss_conf             4765--43877874797989999999999


No 291
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763    This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=96.37  E-value=0.034  Score=36.99  Aligned_cols=203  Identities=22%  Similarity=0.312  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf             99999999999987187742100025884189962344333468899999999861489507820542210047799998
Q gi|254780711|r   72 QMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYL  151 (461)
Q Consensus        72 ~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~  151 (461)
                      ++|++++.+.|..            .+-++.+||.|+.|+||||++==||+-+ +     +. -.               
T Consensus        20 ~~iv~tL~NAi~~------------~ri~HAYLF~GpRGtGKTS~ARIfAKaL-N-----C~-~~---------------   65 (363)
T TIGR02397        20 EHIVKTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKAL-N-----CQ-GP---------------   65 (363)
T ss_pred             HHHHHHHHHHHHH------------CCCCCEEEECCCCCCCHHHHHHHHHHHH-C-----CC-CC---------------
T ss_conf             7999999999971------------8966234502859976355899999986-5-----88-78---------------


Q ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC------------------
Q ss_conf             51034742223321036899999999997415886998334422211246899999985138------------------
Q gi|254780711|r  152 GEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN------------------  213 (461)
Q Consensus       152 a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~------------------  213 (461)
                         -+-|+   .....       ..+--..+..|||=||=|.+..+|     |+++|.+.++                  
T Consensus        66 ---~~~PC---n~C~~-------C~~i~~g~~~DviEiDAASN~gVD-----~IR~l~e~v~y~P~~~kYKvYIIDEVHM  127 (363)
T TIGR02397        66 ---DGEPC---NECES-------CKEINSGSSLDVIEIDAASNNGVD-----DIRELRENVKYAPSKGKYKVYIIDEVHM  127 (363)
T ss_pred             ---CCCCC---CCCCH-------HHHHHCCCCCCEEEECCCCCCCHH-----HHHHHHHHHCCCCCCCCCCEEEEECCCC
T ss_conf             ---77877---77502-------277652898666886486568788-----9999987303687554433588732302


Q ss_pred             ----------------CCCCCCCCCHHCCH-----HHHHHHHHHH-------------------HHCCCC----CEEEEE
Q ss_conf             ----------------51100031011122-----5688889887-------------------635844----077641
Q gi|254780711|r  214 ----------------PHEILLVADALTGQ-----DAVHLARNFD-------------------KIVDLT----GIILTR  249 (461)
Q Consensus       214 ----------------p~e~~lV~da~~Gq-----~a~~~a~~F~-------------------~~~~i~----giIlTK  249 (461)
                                      |.+|.|++ |||=-     -.+.-.+.|+                   +.+.++    -+|.-+
T Consensus       128 LS~~AFNALLKTLEEPP~hV~FIl-ATTE~~KiP~TIlSRCQrF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~  206 (363)
T TIGR02397       128 LSKSAFNALLKTLEEPPEHVVFIL-ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA  206 (363)
T ss_pred             CCHHHHHHHHHHHCCCCCCEEEEE-ECCCHHHCCCCCEEECEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             865689998765227987628887-3487112055402100031267899899999999999870883177899999996


Q ss_pred             CCCCCCCCHHHHHHHHHCCCHHHEECCC--CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH-HHH--HHHHHHHHH
Q ss_conf             1576633036777888478730261586--72321001368899877358627889998742112-678--998886531
Q gi|254780711|r  250 MDGDGRGGAALSMRTVTGKPIKAIGTGE--KINDLENFFPDRIANRILGMGDVVSLVEKAARNLN-EKQ--AALTAKKIA  324 (461)
Q Consensus       250 lD~~akgG~als~~~~~~~PI~fig~GE--~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d-~~~--~~~l~~k~~  324 (461)
                      =||+-|  =|||+-..    +.-.|.|+  +++       ..-|..+||+=|-..|++-+...++ .+.  +-+..+++.
T Consensus       207 a~GS~R--DAlsllDQ----~~~~~~~~DG~i~-------~~~v~~~lGl~~~~~l~~l~~~~~~~~d~~~~l~~~~~~~  273 (363)
T TIGR02397       207 ADGSMR--DALSLLDQ----AISFGNGSDGKIT-------YEDVNEMLGLVDEEKLIELLEAILNKRDTEEALKILDEIL  273 (363)
T ss_pred             CCCCCC--HHHHHHHH----HHHHCCCCCCCCC-------HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             289610--68899999----9982688788657-------8999998357778999999999753876889999999998


Q ss_pred             CCCCCHHHHHHHHHHH
Q ss_conf             0463799999999998
Q gi|254780711|r  325 KGKFDLEDLAEQFRQT  340 (461)
Q Consensus       325 ~g~F~l~Df~~Ql~~i  340 (461)
                      ..-.+++-|+.++-.+
T Consensus       274 ~~G~~~~~f~~~l~~~  289 (363)
T TIGR02397       274 ESGVDPEKFLEDLIEF  289 (363)
T ss_pred             HCCCCHHHHHHHHHHH
T ss_conf             7288898999999999


No 292
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.37  E-value=0.027  Score=37.79  Aligned_cols=104  Identities=24%  Similarity=0.306  Sum_probs=59.0

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC--------------------CCEEEECCCCCCCH--HHHHHHHHHHCC
Q ss_conf             88418996234433346889999999986148--------------------95078205422100--477999985103
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK--------------------KKILMASLDVHRPA--AQEQLRYLGEQI  155 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~--------------------~kV~lv~~Dt~R~a--A~eQL~~~a~~~  155 (461)
                      ..|+-+||.|+.|+||||++-=||..+-....                    ..+..+.+...|..  -++|.+.+++..
T Consensus        22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~  101 (325)
T COG0470          22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFL  101 (325)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC
T ss_conf             88761003799999789999999999658664334552002244432025688659977321333300699999999860


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             474222332103689999999999741588699833442221124689999998513851100031011
Q gi|254780711|r  156 QVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL  224 (461)
Q Consensus       156 ~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~  224 (461)
                      .....                    ..++-+||||-|-.++.|.  -..+.+..+.- |..+.+++-+.
T Consensus       102 ~~~~~--------------------~~~~kviiidead~mt~~A--~nallk~lEep-~~~~~~il~~n  147 (325)
T COG0470         102 SESPL--------------------EGGYKVVIIDEADKLTEDA--ANALLKTLEEP-PKNTRFILITN  147 (325)
T ss_pred             CCCCC--------------------CCCCEEEEEECCCCCCHHH--HHHHHHHCCCC-CCCEEEEEEEC
T ss_conf             44656--------------------6772699973203269888--87675433248-88716999749


No 293
>PRK12377 putative replication protein; Provisional
Probab=96.37  E-value=0.058  Score=35.20  Aligned_cols=81  Identities=23%  Similarity=0.296  Sum_probs=52.8

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      ++.-++|+|+.|+|||.-+.-||..+.. .|++|+++++    +.-+++|+.-- .         .+..-..+    +..
T Consensus       100 ~~~NlIf~G~pGtGKTHLA~AIg~~a~~-~G~sVlF~t~----~dLv~~L~~a~-~---------~g~~~~k~----l~~  160 (248)
T PRK12377        100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTV----PDVMSRLHESY-D---------NGQSGEKF----LQE  160 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEH----HHHHHHHHHHH-H---------CCCCHHHH----HHH
T ss_conf             8860899899998788999999999998-7996999889----99999999999-8---------48509999----999


Q ss_pred             HHHCCCCEEEEECCCCCCCHHH
Q ss_conf             9741588699833442221124
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDS  200 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~  200 (461)
                        -..+|++|||--|-.+.++.
T Consensus       161 --l~~~dLLIIDElG~~~~s~~  180 (248)
T PRK12377        161 --LCKVDLLVLDEIGIQRETKN  180 (248)
T ss_pred             --HHCCCEEEEHHCCCCCCCHH
T ss_conf             --73389898600057889867


No 294
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.37  E-value=0.025  Score=37.98  Aligned_cols=214  Identities=17%  Similarity=0.189  Sum_probs=93.6

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC-------------
Q ss_conf             8841899623443334688999999998614895078205422100477999985103474222332-------------
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIP-------------  164 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~-------------  164 (461)
                      .+-.++.++|+|||||||.+-=++-.++-..| +|.+-.-|..+...    +.+.+.+++= |..+.             
T Consensus        28 ~~Ge~~aliG~NGaGKSTLl~~i~Gll~p~~G-~I~i~G~~i~~~~~----~~~r~~ig~v-fQ~p~~~l~~~tv~~~i~  101 (277)
T PRK13652         28 GRKQRIAVIGPNGAGKSTLFKHFNGILKPTSG-SVLIRGEPITKENI----REVRKFVGLV-FQNPDDQIFSPTVEQDIA  101 (277)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCH----HHHHHCCEEE-EECCCHHHCCCHHHHHHH
T ss_conf             89989999999994799999999669999846-99999999998999----9997132899-877622213255999999


Q ss_pred             ------CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHH----
Q ss_conf             ------10368999999999974158869983344222112-46899999985138511000310-1112256888----
Q gi|254780711|r  165 ------EQSPEKIAIRATQSARDGGYDAVILDTAGRNHIND-SLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHL----  232 (461)
Q Consensus       165 ------~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~-~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~----  232 (461)
                            +.+...+..+ ++.+-+ ..+  |-+-+.|...+= .=+.+.-.|..+.-.+--+|++| .+.|.|....    
T Consensus       102 ~~~~~~g~~~~~~~~~-v~~~l~-~~g--L~~~~~~~~~~LSGGqkqRvaiA~aL~~~P~lLlLDEPtagLDp~~~~~i~  177 (277)
T PRK13652        102 FGPINLGLDEETVAHR-VDEALH-MLG--LEELRDRVPHHLSGGEKKRVAIAGILAMEPQVLVLDEPTAGLDPQGVKELF  177 (277)
T ss_pred             HHHHHCCCCHHHHHHH-HHHHHH-HCC--CHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH
T ss_conf             8898869899999999-999998-679--978871895448999999999999998299999983974548999999999


Q ss_pred             --HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCC-CHHHHHHHHHCCCCHHHHHHH
Q ss_conf             --89887635844077641157663303677788847873026158672321---001-368899877358627889998
Q gi|254780711|r  233 --ARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENF-FPDRIANRILGMGDVVSLVEK  306 (461)
Q Consensus       233 --a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F-~p~~~~~riLGmgD~~~l~e~  306 (461)
                        .+..++..+.|=+++|- |        +..+...---|..+-.|+-+.+=   |.| +|+.+...=|...-+..|...
T Consensus       178 ~~l~~l~~~~g~Tii~vtH-d--------l~~v~~~aDri~vl~~G~ii~~Gtp~ev~~~p~~l~~~~l~~p~~~~l~~~  248 (277)
T PRK13652        178 DFLNALPETYGMTVIFSTH-Q--------VELVAEMADYIYVMEKGEIVGYGTVQEIFLQPDLLARARLDLPSLPKLIQS  248 (277)
T ss_pred             HHHHHHHHHCCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHHCHHHHHHCCCCCCHHHHHHHH
T ss_conf             9999999850989999914-8--------999999799999998999999878999974989999779999839999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             7421126789988865310463799999999998
Q gi|254780711|r  307 AARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQT  340 (461)
Q Consensus       307 ~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i  340 (461)
                      ..+.         -=.+ ...+|.+|..+++-.+
T Consensus       249 L~~~---------g~~i-~~~~~~~~~~d~~~~~  272 (277)
T PRK13652        249 LRAQ---------GIAI-DMAYTYQDAEDAFLKA  272 (277)
T ss_pred             HHHC---------CCCC-CCCCCHHHHHHHHHHH
T ss_conf             9975---------9999-9666778999999998


No 295
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=96.36  E-value=0.056  Score=35.33  Aligned_cols=164  Identities=20%  Similarity=0.304  Sum_probs=107.6

Q ss_pred             EEEECCC-CCCHHHHHHHHHHHHHHHCCCCEE-----------EECCCCCCCHHHHHHHHHHHCCC--------------
Q ss_conf             9962344-333468899999999861489507-----------82054221004779999851034--------------
Q gi|254780711|r  103 IMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKIL-----------MASLDVHRPAAQEQLRYLGEQIQ--------------  156 (461)
Q Consensus       103 IllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~-----------lv~~Dt~R~aA~eQL~~~a~~~~--------------  156 (461)
                      ||++|-+ -||||+-+|=||+-|.+ +|.+|+           .||.|--=.|-..-+|.||..+.              
T Consensus         1 iMV~GTsS~AGKs~l~AaLCRiL~r-rGy~VAPFKsQNMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNPvLLKPkg   79 (502)
T TIGR00313         1 IMVVGTSSSAGKSLLTAALCRILAR-RGYRVAPFKSQNMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNPVLLKPKG   79 (502)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             9542011540289999999999852-788127850110101333113787551376899986387886234871016788


Q ss_pred             ---------------CCC--CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH-HH--HHHHHHCCCCC
Q ss_conf             ---------------742--22332103689999999999741588699833442221124689-99--99985138511
Q gi|254780711|r  157 ---------------VDT--LEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQ-EI--SEIKSLTNPHE  216 (461)
Q Consensus       157 ---------------v~~--~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~-El--~~i~~~~~p~e  216 (461)
                                     +.+  |....-.-....+++++++. ++.||+|+|-=|| +.-+-||.+ -|  -+|.+.++|+ 
T Consensus        80 df~SQviv~G~a~g~~~~~~Y~~~~~d~~~~~i~eSle~L-~~~Yd~vv~EGAG-S~AEINL~~rDLaN~~iA~~~~A~-  156 (502)
T TIGR00313        80 DFTSQVIVHGRAVGDMNAQEYYKNKVDFLLKAIKESLEIL-AEEYDLVVIEGAG-SPAEINLKERDLANMRIAELADAD-  156 (502)
T ss_pred             CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCC-CCCCCCCCCCCCHHHHHHHHCCCC-
T ss_conf             8466789841124667615677799999999999999875-2028889982688-710005331572247898643976-


Q ss_pred             CCCCCCHHCCHHHHHHHHHHHHHC------CCCCEEEEECCCCCCC--CHHHHHHHHHCCCHH
Q ss_conf             000310111225688889887635------8440776411576633--036777888478730
Q gi|254780711|r  217 ILLVADALTGQDAVHLARNFDKIV------DLTGIILTRMDGDGRG--GAALSMRTVTGKPIK  271 (461)
Q Consensus       217 ~~lV~da~~Gq~a~~~a~~F~~~~------~i~giIlTKlD~~akg--G~als~~~~~~~PI~  271 (461)
                      ++||.|=-=|--=..++=+.. -+      -|=|+|+-|+-|..--  -++=.+=..||+|+.
T Consensus       157 ~iLvADIDRGGVFAsi~GTl~-LL~~~~r~liKG~vINkfRG~~~vL~~GI~~lEelTGiPVL  218 (502)
T TIGR00313       157 VILVADIDRGGVFASIYGTLK-LLPEEERKLIKGIVINKFRGNVDVLESGIEKLEELTGIPVL  218 (502)
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCCCCCEECEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             799975077743243374666-18834575003068835468724434456899885484234


No 296
>pfam00350 Dynamin_N Dynamin family.
Probab=96.35  E-value=0.014  Score=39.80  Aligned_cols=66  Identities=26%  Similarity=0.176  Sum_probs=37.9

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---HHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             58869983344222112468999999851385110003101112---256888898876358440776411
Q gi|254780711|r  183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---QDAVHLARNFDKIVDLTGIILTRM  250 (461)
Q Consensus       183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q~a~~~a~~F~~~~~i~giIlTKl  250 (461)
                      ..+++||||.|=......--+-...+..  ..|-+++|+||...   |++...++.....-.-+=+|+||.
T Consensus       100 ~~~l~lvDtPGl~s~~~~~~~~t~~~i~--~~d~il~V~~a~~~~~~~~~~~l~~~~d~~~~r~i~V~tk~  168 (168)
T pfam00350       100 VPGLTLVDTPGLDSVAVGDQDLTEEYIK--PADIILAVVDANHDLSTSEALFLAREVDPNGKRTIGVLTKD  168 (168)
T ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHH--HCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             8881898279865444336999999985--38669999846951666199999997399998389998188


No 297
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=96.33  E-value=0.041  Score=36.34  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=23.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             99623443334688999999998614895078205
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASL  137 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~  137 (461)
                      ||+.|+.|+|||+.+--+|+.+.    ..+..+.+
T Consensus         1 iLl~GppGtGKT~~a~~la~~~~----~~~~~v~~   31 (131)
T pfam00004         1 LLLYGPPGTGKTTLAKAVAKELG----APFIEISG   31 (131)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC----CCCEECCC
T ss_conf             98789999999999999999978----98533242


No 298
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP).  It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.33  E-value=0.0081  Score=41.71  Aligned_cols=122  Identities=22%  Similarity=0.233  Sum_probs=62.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      .|+++|++|||||||..-+-.++.. .+++|.-+. |-     +|..-.+..++.|.   ...+.+..    .++..+..
T Consensus        82 lilitGptGSGKtTtl~a~l~~~~~-~~~~i~tiE-dP-----vE~~~~~~~Q~~v~---~~~g~~~~----~~lr~~LR  147 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNT-PEKNIITVE-DP-----VEYQIPGINQVQVN---EKAGLTFA----RGLRAILR  147 (264)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEE-CC-----CCCCCCCCCEEEEC---CCCCCCHH----HHHHHHHC
T ss_conf             8999789999779999999986436-885089986-76-----31456887357616---66687899----99999855


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             158869983344222112468999999851385110003101112256888898876358440776
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIIL  247 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIl  247 (461)
                      ..-|+|+|+-.-    |.+-....  +..+..-|   ||+...--.++......+.+ ++++-..+
T Consensus       148 ~dPDvi~igEiR----D~eta~~a--~~aa~tGh---lV~tTlHa~~a~~~i~RL~~-lgv~~~~l  203 (264)
T cd01129         148 QDPDIIMVGEIR----DAETAEIA--VQAALTGH---LVLSTLHTNDAPGAITRLLD-MGIESYLL  203 (264)
T ss_pred             CCCCEEEECCCC----CHHHHHHH--HHHHHHCC---EEEEEECCCCHHHHHHHHHH-CCCCHHHH
T ss_conf             699988746889----99999999--99997099---69999703999999999998-29998999


No 299
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.33  E-value=0.048  Score=35.81  Aligned_cols=228  Identities=19%  Similarity=0.239  Sum_probs=104.1

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC------
Q ss_conf             00025884189962344333468899999999861489507820542210047799998510347422233210------
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ------  166 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~------  166 (461)
                      +...++  .++.++|+|||||||.+-=|+..++-..| .|.+-..+..-.-.-..++.+..++++=| ..+..+      
T Consensus        15 l~i~~G--e~vaiiG~sGsGKSTLl~~l~GLl~P~~G-~i~~~g~~i~~~~~~~~~~~lr~~vG~Vf-Q~P~~ql~~~tV   90 (276)
T PRK13634         15 VSIPSG--SYVAIIGHTGSGKSTLLQHLNGLLKPTKG-TVTIGERVITAGKKNKKLKPLRKKVGIVF-QFPEHQLFEETV   90 (276)
T ss_pred             EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCCHHHHHHHHHCEEEEE-ECCCHHCCHHHH
T ss_conf             799899--89999999996999999999749998874-99999998868886666899873268999-876200155159


Q ss_pred             -------------HHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHHHH
Q ss_conf             -------------3689999999999741588699833442221--12468999999851385110003101-1122568
Q gi|254780711|r  167 -------------SPEKIAIRATQSARDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADA-LTGQDAV  230 (461)
Q Consensus       167 -------------dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~a~  230 (461)
                                   .+.++..++.+..+.-+.+-   +-.-|.+.  ... ..+--.|..+.--+-.+|++|= ++|.|..
T Consensus        91 ~e~iafg~~~~g~~~~e~~~rv~~~L~~vgL~~---~~~~r~p~~LSGG-qkQRVaIA~aLa~~P~iLllDEPTs~LD~~  166 (276)
T PRK13634         91 EKDICFGPMNFGVSEEEAKQKAKEMIELVGLPE---ELLARSPFELSGG-QMRRVAIAGVLAMEPEVLVLDEPTAGLDPK  166 (276)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH---HHHHCCHHHCCHH-HHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf             999999999869999999999999999769987---7861890018999-999999999997299989976985427999


Q ss_pred             HHHH------HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCC-CHHHHHHHHHCCCCH
Q ss_conf             8889------887635844077641157663303677788847873026158672321---001-368899877358627
Q gi|254780711|r  231 HLAR------NFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENF-FPDRIANRILGMGDV  300 (461)
Q Consensus       231 ~~a~------~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F-~p~~~~~riLGmgD~  300 (461)
                      .+.+      ..++..+.|=+++|- |        +..+...---|.++--|+-+.+=   |+| +|+.+-..=|....+
T Consensus       167 ~~~~i~~ll~~L~~e~g~Tii~vTH-d--------l~~~~~~aDrvivm~~G~Iv~~G~p~evf~~p~~l~~~~l~~P~~  237 (276)
T PRK13634        167 GRKEIMEMFYKLHKEKGLTTVLVTH-S--------MEDAARYADQIVVMHKGTVFLQGTPREIFSHPDELEAIGLDLPET  237 (276)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHH
T ss_conf             9999999999999961999999867-9--------999999799999998999999878999972999999779999969


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             889998742112678998886531046379999999999851148
Q gi|254780711|r  301 VSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGG  345 (461)
Q Consensus       301 ~~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~kmG~  345 (461)
                      ..|....++..        --.+..-.+|.+++.+++.+.-+=|+
T Consensus       238 ~~l~~~L~~~~--------g~~~~~~~~t~ee~~~~i~~~~~~~g  274 (276)
T PRK13634        238 VKFKRALEEKF--------GISFPKPTLTLEELAHEVVQVLRKGG  274 (276)
T ss_pred             HHHHHHHHHHH--------CCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99999998965--------99999888899999999999997538


No 300
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.32  E-value=0.025  Score=38.03  Aligned_cols=61  Identities=20%  Similarity=0.226  Sum_probs=37.3

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             0002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ  156 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~  156 (461)
                      +...++  -++.++|++||||||.+-=++..+.-..| +|.+-..|.......+..+..+..++
T Consensus        31 l~i~~G--E~v~ivG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~G~~~~~~~~~~~~~~r~~~ig   91 (228)
T PRK10584         31 LVVKRG--ETIALIGESGSGKSTLLAILAGLDDGSSG-EVSLVGQPLHNMDEEARAKLRAKHVG   91 (228)
T ss_pred             EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHHCCCEE
T ss_conf             899999--89999999985899999999669999967-99999999997998899876306477


No 301
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.32  E-value=0.013  Score=40.04  Aligned_cols=153  Identities=20%  Similarity=0.313  Sum_probs=90.1

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      +.|+-++|..+|||||.+-||...++. +|.+|++|--+...             ..+    ...++|.-.        +
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~-~G~rVa~iKH~hh~-------------~~~----D~~GkDs~r--------~   55 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKA-RGYRVATVKHAHHD-------------FDL----DKPGKDTYR--------H   55 (161)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCC-------------CCC----CCCCCCCCH--------H
T ss_conf             728999962799734289999999975-79379999865877-------------777----889876610--------0


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHCCCC-CCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCC---
Q ss_conf             74158869983344222112468-9999998513851-100031011122568888988763584407764115766---
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLM-QEISEIKSLTNPH-EILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDG---  254 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm-~El~~i~~~~~p~-e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~a---  254 (461)
                      ...+.+.+++=+..|...-.... .+|..+.....|. ..+||             +-|+ ..++-.|++-+-+...   
T Consensus        56 ~~aGa~~~v~~s~~~~~~~~~~~~~~L~~vl~~l~~~~D~vLV-------------EGFK-~~~~pKI~~~r~~~~~~~~  121 (161)
T COG1763          56 RKAGADQVVVASDHRTALMTRTPDRDLDAVLSRLDPLLDLVLV-------------EGFK-EEPLPKIVLGRDEEGDREP  121 (161)
T ss_pred             HCCCCCEEEEECCCEEEEEEECCCCCHHHHHHHCCCCCCEEEE-------------ECCC-CCCCCEEEEECCCCCCCCC
T ss_conf             0356634999559789999826876899999742755679999-------------5256-6777789995666554455


Q ss_pred             CCCHHHHH-HHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             33036777-888478730261586723210013688998773
Q gi|254780711|r  255 RGGAALSM-RTVTGKPIKAIGTGEKINDLENFFPDRIANRIL  295 (461)
Q Consensus       255 kgG~als~-~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL  295 (461)
                      ....+.++ ......|+.++..=. ..++.  ++++.+..++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~--~~~~~~~~~~  160 (161)
T COG1763         122 VDVIDPAVIAVAKDAPLAEVTDLP-VLDLN--DVEALADFVL  160 (161)
T ss_pred             CCCCCCHHHHHCCCCCCCCCCCCC-HHHCC--CHHHHHHHHC
T ss_conf             432221121001430000003684-23210--0588887540


No 302
>PRK06921 hypothetical protein; Provisional
Probab=96.31  E-value=0.1  Score=33.33  Aligned_cols=124  Identities=20%  Similarity=0.299  Sum_probs=75.6

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      -+-++|.|..|+|||--+.-+|+.+.++.+.+|+....    +..++.|+..        |.. .        ..-++..
T Consensus       116 ~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~----~~~~~~lk~~--------~~~-~--------~~~l~~~  174 (265)
T PRK06921        116 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF----VEGFGDLKDD--------FDL-L--------EAKLNRM  174 (265)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEH----HHHHHHHHHH--------HHH-H--------HHHHHHH
T ss_conf             66279972898988999999999999962971999887----9999999988--------888-9--------9999986


Q ss_pred             HHCCCCEEEEECC-----CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             7415886998334-----42221124689999998513851100031011122568888988763584407764115766
Q gi|254780711|r  180 RDGGYDAVILDTA-----GRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDG  254 (461)
Q Consensus       180 ~~~~~D~iiiDTa-----GR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~a  254 (461)
                        ..+|++|||--     |.....++-++++                              |                  
T Consensus       175 --~~~dlLIIDDLfk~~~G~e~~te~~~~~l------------------------------f------------------  204 (265)
T PRK06921        175 --KKVEVLFIDDLFKPVNGKPRATEWQIEQT------------------------------Y------------------  204 (265)
T ss_pred             --HCCCEEEEECCCCCCCCCCCCCHHHHHHH------------------------------H------------------
T ss_conf             --32999998221223479878988999999------------------------------9------------------


Q ss_pred             CCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             330367778884787302615867232100136889987735862
Q gi|254780711|r  255 RGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGD  299 (461)
Q Consensus       255 kgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD  299 (461)
                         .+|.-++.-++|+ -|+|-..+++|..+ .+|++|||+.|--
T Consensus       205 ---~iIN~Ry~~~kpt-IiSSNl~~~~L~~i-~e~i~SRi~emc~  244 (265)
T PRK06921        205 ---SVVNYRYLNHKPI-LISSELTIDELLDI-DEALGSRIVEMCK  244 (265)
T ss_pred             ---HHHHHHHHCCCCE-EEECCCCHHHHHHH-HHHHHHHHHHHCC
T ss_conf             ---9999999769998-99868998999876-3798888999725


No 303
>cd04155 Arl3 Arl3 subfamily.  Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension.  In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form.  The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector.  Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2).  It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery.  In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.29  E-value=0.012  Score=40.43  Aligned_cols=94  Identities=17%  Similarity=0.299  Sum_probs=49.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ  177 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~  177 (461)
                      .+...|+++|+.||||||-+-+|.    . +....      +            .-..++.+..                
T Consensus        12 ~~~~Ki~ilG~~~sGKTsll~~l~----~-~~~~~------~------------~pT~g~~~~~----------------   52 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLA----S-EDISH------I------------TPTQGFNIKT----------------   52 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH----C-CCCCC------C------------CCCCCEEEEE----------------
T ss_conf             877589999799998899999985----6-99866------0------------6811323799----------------


Q ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCHHCCHHHHHHH-HHHHHH
Q ss_conf             9974158869983344222112468999-9998513851100031011122568888-988763
Q gi|254780711|r  178 SARDGGYDAVILDTAGRNHINDSLMQEI-SEIKSLTNPHEILLVADALTGQDAVHLA-RNFDKI  239 (461)
Q Consensus       178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~~~p~e~~lV~da~~Gq~a~~~a-~~F~~~  239 (461)
                       ...+++.+.+-||+|....     .++ +.+.+  +.+-+++|+|++- .+.++.+ ..+++.
T Consensus        53 -v~~~~~~~~lwD~~G~~~~-----~~~~~~y~~--~a~~iI~VvD~td-~~~~~~~~~~l~~~  107 (173)
T cd04155          53 -VQSDGFKLNVWDIGGQRAI-----RPYWRNYFE--NTDCLIYVIDSAD-KKRLEEAGAELVEL  107 (173)
T ss_pred             -EEECCEEEEEEECCCCHHH-----HHHHHHHCC--CCCEEEEEEECCC-HHHHHHHHHHHHHH
T ss_conf             -9989999999855875101-----268997655--5637999996675-68899999999999


No 304
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.29  E-value=0.036  Score=36.79  Aligned_cols=216  Identities=20%  Similarity=0.229  Sum_probs=97.1

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC--------------
Q ss_conf             841899623443334688999999998614895078205422100477999985103474222332--------------
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIP--------------  164 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~--------------  164 (461)
                      +--++.++|+|||||||.+-=|+..++-..| +|.+-..|.....  ..+..+.+++|+= |..+.              
T Consensus        32 ~GE~v~iiG~nGsGKSTLl~~l~GLl~p~~G-~V~i~G~~i~~~~--~~~~~~r~~iG~V-fQ~P~~~l~~~tV~e~i~f  107 (287)
T PRK13637         32 DGEFVALIGHTGSGKSTLIQHLNGLLKPTSG-KIIIDGVDITDKK--VKLSDIRKKVGLV-FQYPEYQLFEETIEKDIAF  107 (287)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCC--CCHHHHHHCEEEE-EECCCCCCCCCCHHHHHHH
T ss_conf             9989999999993999999999739988872-6999999987888--6778887417899-6175202370309999986


Q ss_pred             -----CCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHH----
Q ss_conf             -----1036899999999997-415886998334422211-246899999985138511000310-1112256888----
Q gi|254780711|r  165 -----EQSPEKIAIRATQSAR-DGGYDAVILDTAGRNHIN-DSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHL----  232 (461)
Q Consensus       165 -----~~dp~~i~~~a~~~a~-~~~~D~iiiDTaGR~~~d-~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~----  232 (461)
                           +-+..++..+ ++.+- .-+.|.  -+-+.|.+.+ ..=+.+--.|..+.--+--+|++| .++|.|....    
T Consensus       108 g~~~~g~~~~e~~~r-v~~~l~~vgL~~--~~~~~~~p~~LSGGqkQRvaiA~aL~~~P~iLllDEPTs~LDp~~~~~i~  184 (287)
T PRK13637        108 GPINLGLSEEEIENR-VKEAMNIVGLDY--EVYKDKSPFELSGGQKRRVAIAGVVAMEPKVLILDEPTAGLDPKGRDDIL  184 (287)
T ss_pred             HHHHCCCCHHHHHHH-HHHHHHHCCCCH--HHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             898869999999999-999997669984--88706891129988999999999998399999983886648999999999


Q ss_pred             --HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCC-CHHHHHHHHHCCCCHHHHHHH
Q ss_conf             --89887635844077641157663303677788847873026158672321---001-368899877358627889998
Q gi|254780711|r  233 --ARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENF-FPDRIANRILGMGDVVSLVEK  306 (461)
Q Consensus       233 --a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F-~p~~~~~riLGmgD~~~l~e~  306 (461)
                        .+..++..++|=+++|- |        +..+...---|..+--|+-+.|=   |.| +|+.+...=|+...+..|..+
T Consensus       185 ~~l~~L~~e~g~Tvi~vTH-d--------l~~v~~~aDRvivl~~G~Iv~~Gtp~evf~~~~~l~~~~l~~P~~~~l~~~  255 (287)
T PRK13637        185 EKIKALHKEYNMTIILVSH-S--------MEDVAKIADRIIVMNKGRCELQGTPREVFKEVDTLESIGLAVPQVTYLVRK  255 (287)
T ss_pred             HHHHHHHHHCCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHH
T ss_conf             9999999850989999957-9--------999999699999998999999878899876988998769999919999999


Q ss_pred             HHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             7421-126789988865310463799999999998
Q gi|254780711|r  307 AARN-LNEKQAALTAKKIAKGKFDLEDLAEQFRQT  340 (461)
Q Consensus       307 ~~~~-~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i  340 (461)
                      ..+. ++          +...-+|+++..+++-..
T Consensus       256 L~~~g~~----------~~~~~~t~~e~~~~l~~~  280 (287)
T PRK13637        256 LRKKGFN----------IPDDIFTIEEAKEELLKY  280 (287)
T ss_pred             HHHCCCC----------CCCCCCCHHHHHHHHHHH
T ss_conf             9975999----------998866899999999999


No 305
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.29  E-value=0.14  Score=32.38  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=67.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCC
Q ss_conf             3111269989999999999999871877421000258841899623443334688999999998614-895078205422
Q gi|254780711|r   62 EKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVH  140 (461)
Q Consensus        62 ~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~  140 (461)
                      .-+|..+--++.=++.+...|...+.         ...|..+++.|+.|+|||+|+-.+...++... ...+.-|.|-.+
T Consensus        26 ~yvP~~l~~Re~Ei~~l~~~l~~~l~---------g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~   96 (394)
T PRK00411         26 DYVPENLPHREEQIEELAFALRPALR---------GSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQID   96 (394)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             88899898859999999999999975---------999984799889999899999999999997468965999969668


Q ss_pred             CCHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCC--HHHHHHHHHHHHH
Q ss_conf             100477999985103-474222332103689999999999741--588699833442221--1246899999985
Q gi|254780711|r  141 RPAAQEQLRYLGEQI-QVDTLEVIPEQSPEKIAIRATQSARDG--GYDAVILDTAGRNHI--NDSLMQEISEIKS  210 (461)
Q Consensus       141 R~aA~eQL~~~a~~~-~v~~~~~~~~~dp~~i~~~a~~~a~~~--~~D~iiiDTaGR~~~--d~~lm~El~~i~~  210 (461)
                      +.- ..=+..++..+ +.++  ...|- |..-.++.+......  .+=+|++|-.-.+-.  ..+++-.|-+...
T Consensus        97 ~t~-~~i~~~i~~~L~~~~~--p~~G~-s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~  167 (394)
T PRK00411         97 RTR-YAILSEIARSLFGHPP--PSSGL-SFDELFDKIAEYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHE  167 (394)
T ss_pred             CCH-HHHHHHHHHHHCCCCC--CCCCC-CHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCC
T ss_conf             989-9999999999569989--87787-89999999999861669758999965540203665089999985402


No 306
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.28  E-value=0.14  Score=32.33  Aligned_cols=115  Identities=25%  Similarity=0.222  Sum_probs=71.4

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC---HHHHHHHH
Q ss_conf             4189962344333468899999999861489507820542210047799--998510347422233210---36899999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ---SPEKIAIR  174 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~---dp~~i~~~  174 (461)
                      -..|.+.|-.|.|||+.+--+|.....+.|++|++.+..--    -+||  +.+|...+|+......+.   +...-...
T Consensus       194 g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs----~eql~~R~la~~s~i~~~~i~~g~l~~~~~~~~~~  269 (421)
T TIGR03600       194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS----AEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLN  269 (421)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf             86899985467874599999999999866983899925799----99999999998548977666528999899999999


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             9999974158869983344222112468999999851385110003101
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                      ++...  .+..+.|-||++..-.  ++...++++.+.-.+ --+.|+|-
T Consensus       270 a~~~l--~~~~l~i~d~~~~ti~--~ir~~~r~~~~~~~~-l~livIDY  313 (421)
T TIGR03600       270 AVDRL--SEKDLYIDDTGGLTVA--QIRSIARRIKRKKGG-LDLIVVDY  313 (421)
T ss_pred             HHHHH--HCCCEEEECCCCCCHH--HHHHHHHHHHHHCCC-CCEEEECH
T ss_conf             99986--1687899669988767--899999999986289-86999757


No 307
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=96.28  E-value=0.023  Score=38.27  Aligned_cols=128  Identities=27%  Similarity=0.332  Sum_probs=71.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      .|++||..++||+|-.-.|..       .+.  ++-   ++    |        .+                        
T Consensus         3 kVaivGrpNvGKSTLlN~L~g-------~~i--~~~---K~----q--------tt------------------------   34 (143)
T pfam10662         3 KIMLIGRSGCGKTTLTQALNG-------EEL--KYK---KT----Q--------AI------------------------   34 (143)
T ss_pred             EEEEECCCCCCHHHHHHHHCC-------CCE--EEC---CC----E--------EE------------------------
T ss_conf             599989999999999999759-------944--517---87----0--------79------------------------


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf             158869983344222112468999999851385110003101112256--888898876358440776411576633036
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDA--VHLARNFDKIVDLTGIILTRMDGDGRGGAA  259 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a--~~~a~~F~~~~~i~giIlTKlD~~akgG~a  259 (461)
                       .+...+|||+|.+..+..+++.+..-..  +.|-++||+||.-....  ...++.|+.  ++ =+|++|.|--.+- ..
T Consensus        35 -~~~~~~IDTPG~~~~~~~~~~~~~~~~~--daDvil~vvDa~~~~~~~~~~~~~~~~k--pv-IlViNKiD~~~~~-~~  107 (143)
T pfam10662        35 -EFSDNMIDTPGEYLENRRFYSALIVTAA--DADVIALVQDATEPWSVFPPGFASMFNK--PV-IGIITKIDLAKDE-AN  107 (143)
T ss_pred             -EECCCEEECCCCCCCCHHHHHHHHHHHH--HCCEEEEEEECCCCCCCCCHHHHHHCCC--CE-EEEEECCCCCCCH-HH
T ss_conf             -8557489998766562899999999996--4999999987788667568778975479--88-9999802245756-67


Q ss_pred             HHHHH----HHCC-CHHHEE--CCCCCCCCCC
Q ss_conf             77788----8478-730261--5867232100
Q gi|254780711|r  260 LSMRT----VTGK-PIKAIG--TGEKINDLEN  284 (461)
Q Consensus       260 ls~~~----~~~~-PI~fig--~GE~~~dle~  284 (461)
                      +....    ..+. .|..|+  +|+.+|+|-.
T Consensus       108 l~~~~~~~~~~~~~~i~~iSA~~g~Gid~L~~  139 (143)
T pfam10662       108 IEMVEEWLNNAGAEKIFEVSAVTNEGIDELFA  139 (143)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf             89999999758998799988989989999999


No 308
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.27  E-value=0.0069  Score=42.25  Aligned_cols=68  Identities=19%  Similarity=0.259  Sum_probs=48.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      ||-+||-.||||||-+.||-.+|+. +|.+|+.|--|.++             ..+    ..+++|.-.        +++
T Consensus         4 ii~ivG~s~SGKTTLi~kli~~l~~-~G~rV~~IKH~~H~-------------f~~----D~pGkDS~r--------~r~   57 (170)
T PRK10751          4 LLAIAAWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHD-------------MDV----DKPGKDSYE--------LRK   57 (170)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC-------------CCC----CCCCCCCHH--------HHH
T ss_conf             7999946999999999999999998-79849999457778-------------889----999841099--------997


Q ss_pred             CCCCEEEEECCCCC
Q ss_conf             15886998334422
Q gi|254780711|r  182 GGYDAVILDTAGRN  195 (461)
Q Consensus       182 ~~~D~iiiDTaGR~  195 (461)
                      -+.+.++|=+..|.
T Consensus        58 AGA~~v~v~s~~r~   71 (170)
T PRK10751         58 AGAAQTLVASQQRW   71 (170)
T ss_pred             HCCCEEEEECCCCE
T ss_conf             32664688754321


No 309
>cd01884 EF_Tu EF-Tu subfamily.  This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts.  It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors.  The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family.  EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function.  When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors.  Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.27  E-value=0.022  Score=38.47  Aligned_cols=123  Identities=16%  Similarity=0.135  Sum_probs=65.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      -|.++|=-.+||||.+..|.+.+...+ .....      +..+.+++.. -+.-|+.+.....             .+..
T Consensus         4 Ni~iiGHVDhGKTTL~~~l~~~~~~~~-~~~~~------~~~~~D~~~~-EreRGiTI~~~~~-------------~~~~   62 (195)
T cd01884           4 NVGTIGHVDHGKTTLTAAITKVLAKKG-GAKFK------KYDEIDKAPE-EKARGITINTAHV-------------EYET   62 (195)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHC-CCCCC------CCHHCCCCHH-HHCCCCCCCCEEE-------------EEEC
T ss_conf             999996058869899999999886634-44411------2001005466-6505886144189-------------9960


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHH--HHCCCCCEE--EEECCCC
Q ss_conf             15886998334422211246899999985138511000310111225688889-887--635844077--6411576
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR-NFD--KIVDLTGII--LTRMDGD  253 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~--~~~~i~giI--lTKlD~~  253 (461)
                      .++.+-+|||+|-...    +.++..  .+...|-.+||+||.-|...  |.+ .+.  ..+++.-+|  ++|+|-.
T Consensus        63 ~~~~~~~IDtPGH~dF----~~~~i~--g~~~~D~aiLVVdA~eGv~~--QT~eh~~la~~lgi~~iiV~iNK~D~~  131 (195)
T cd01884          63 ANRHYAHVDCPGHADY----IKNMIT--GAAQMDGAILVVSATDGPMP--QTREHLLLARQVGVPYIVVFLNKADMV  131 (195)
T ss_pred             CCEEEEECCCCCHHHH----HHHHHH--HHHHCCEEEEEEECCCCCCH--HHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             8816996268960778----889986--35113626899852778747--899999999980999627999687789


No 310
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.24  E-value=0.044  Score=36.08  Aligned_cols=215  Identities=17%  Similarity=0.139  Sum_probs=103.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
                      -++.++|.|||||||.+-=|+..+.-..| +|.+-.-|.....    +..+..++++= |..+...=+...+++-+.+..
T Consensus        31 E~vaivG~nGsGKSTL~~~l~Gll~p~~G-~I~i~G~~i~~~~----~~~lr~~ig~V-fQ~p~~~~~~~tV~e~i~fgl  104 (276)
T PRK13650         31 EWLSIIGHNGSGKSTTVRLIDGLLEAESG-SIIIDGDLLTEEN----VWEIRHKIGMV-FQNPDNQFVGATVEDDVAFGL  104 (276)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCC----HHHHHHCEEEE-EECCCHHCCCCCHHHHHHHHH
T ss_conf             89999999998799999999738898860-8999999998677----68876414699-767201056363999998799


Q ss_pred             HC-CC-------------C-EEEEECCCCCCCHH-HHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHH------HHHHH
Q ss_conf             41-58-------------8-69983344222112-46899999985138511000310-1112256888------89887
Q gi|254780711|r  181 DG-GY-------------D-AVILDTAGRNHIND-SLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHL------ARNFD  237 (461)
Q Consensus       181 ~~-~~-------------D-~iiiDTaGR~~~d~-~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~------a~~F~  237 (461)
                      .+ +.             + +=+-|-+-|.+..= .=..+--.|.++.-.+--+|++| .+++.|....      .+..+
T Consensus       105 ~~~g~~~~e~~~rv~~~l~~~gl~~~~~r~p~~LSGGQrQRvaIA~aLa~~P~lLilDEPTs~LD~~~~~~i~~~l~~l~  184 (276)
T PRK13650        105 ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKNIR  184 (276)
T ss_pred             HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             87799999999999999987799245538903389999999999999973999999838866589999999999999999


Q ss_pred             HHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             63584407764115766330367778884787302615867232---1001-3688998773586278899987421126
Q gi|254780711|r  238 KIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENF-FPDRIANRILGMGDVVSLVEKAARNLNE  313 (461)
Q Consensus       238 ~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F-~p~~~~~riLGmgD~~~l~e~~~~~~d~  313 (461)
                      +..++|-+++|- |    -.. +.    .---|.++-.|+-+.+   =|.| +|+.+...=|.-..+..+..+.++.   
T Consensus       185 ~~~g~Tvi~iTH-d----l~~-v~----~aDrvivm~~G~Iv~~Gtp~evf~~p~~l~~~~l~~P~~~~~~~~L~~~---  251 (276)
T PRK13650        185 DDYQLTVISITH-D----LDE-VA----LSDRVLVMKDGQVESTSTPRELFSRGDELLQLGLDIPFTTSLVQMLQEE---  251 (276)
T ss_pred             HHCCCEEEEEEE-C----HHH-HH----CCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHC---
T ss_conf             842989999957-7----899-96----0999999989999997689999749899997799998699999999965---


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             789988865310463799999999998
Q gi|254780711|r  314 KQAALTAKKIAKGKFDLEDLAEQFRQT  340 (461)
Q Consensus       314 ~~~~~l~~k~~~g~F~l~Df~~Ql~~i  340 (461)
                            --.+-.+-+|.++..+++..+
T Consensus       252 ------g~~~~~~~~t~~e~~~~l~~~  272 (276)
T PRK13650        252 ------GYDLDYGYLTEKELEEQLWEL  272 (276)
T ss_pred             ------CCCCCCCCCCHHHHHHHHHHH
T ss_conf             ------999998887999999999999


No 311
>PRK05636 replicative DNA helicase; Provisional
Probab=96.23  E-value=0.14  Score=32.17  Aligned_cols=114  Identities=15%  Similarity=0.215  Sum_probs=71.1

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCCH-HH--HHHHH
Q ss_conf             4189962344333468899999999861489507820542210047799--9985103474222332103-68--99999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQS-PE--KIAIR  174 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~d-p~--~i~~~  174 (461)
                      -..|.+.|=.|.|||+.+--+|.....+++++|++.+..--    .+||  +.+|...+|+......+.- ..  .-+..
T Consensus       267 G~LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLEMs----~~ql~~Rlla~~s~V~~~~ir~g~l~~~~~~~l~~  342 (507)
T PRK05636        267 GQMIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLEMS----KSEIVMRLLSAEAEVRLADMRGGKMDEDAWEKLVQ  342 (507)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf             56799973787866899999999999876993799715699----89999999998479887888558878899999999


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             9999974158869983344222112468999999851385110003101
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                      ++...  .+..+.|-||++. ... ++....+++++..+.+  ++|+|-
T Consensus       343 a~~~l--~~~pl~IdD~~~l-ti~-~Ira~aRrlk~~~~l~--livVDY  385 (507)
T PRK05636        343 RLGKI--AQAPIFIDDSANL-TMM-EIRSKARRLKQKHDLK--MIVVDY  385 (507)
T ss_pred             HHHHH--HHCCEEEECCCCC-CHH-HHHHHHHHHHHHCCCC--EEEEEH
T ss_conf             99998--6198899849997-699-9999999998617999--899845


No 312
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.23  E-value=0.076  Score=34.28  Aligned_cols=46  Identities=20%  Similarity=0.335  Sum_probs=31.8

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             0002588418996234433346889999999986148950782054221
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR  141 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R  141 (461)
                      +...++  .++.++|++||||||.+-=|+..+.-..| .|.+-..|...
T Consensus        25 l~i~~G--e~v~ivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~   70 (221)
T cd03244          25 FSIKPG--EKVGIVGRTGSGKSSLLLALFRLVELSSG-SILIDGVDISK   70 (221)
T ss_pred             EEECCC--CEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf             998699--89999999999899999999679718984-89999999661


No 313
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=96.23  E-value=0.012  Score=40.34  Aligned_cols=134  Identities=20%  Similarity=0.281  Sum_probs=69.9

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHH--
Q ss_conf             8418996234433346889999999986148950782054221004779999851034742223--321036899999--
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV--IPEQSPEKIAIR--  174 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~--~~~~dp~~i~~~--  174 (461)
                      ..-.|.+||-=-+||+|.++-|.+-+   +.  +     |   ...+++++.-++..|-.-+..  .....+.+- .+  
T Consensus         6 ~~l~i~~~GhVD~GKSTL~G~Ll~~~---g~--v-----~---~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er-~rGi   71 (443)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKL---GG--I-----D---KRTIEKFEKESAEMGKGSFKYAWVLDKLKAER-ERGI   71 (443)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHC---CC--C-----C---HHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHH-HCCC
T ss_conf             76599999477982888899999873---88--4-----6---88999998888871787200044530776676-3671


Q ss_pred             ----HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH---------HHHHHHHHHHHHCC
Q ss_conf             ----99999741588699833442221124689999998513851100031011122---------56888898876358
Q gi|254780711|r  175 ----ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ---------DAVHLARNFDKIVD  241 (461)
Q Consensus       175 ----a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq---------~a~~~a~~F~~~~~  241 (461)
                          +..++...++.+.|||++|--.+=.++      |..+..+|-.+||+||..|-         ...+.+. ....++
T Consensus        72 Tidv~~~~f~t~~~~~~iiD~PGH~~fi~nm------i~Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~-i~~~lg  144 (443)
T PTZ00141         72 TIDIALWKFETPKYYYTVIDAPGHRDFIKNM------ITGTSQADVALLVVPAEVGGFEGAFSKEGQTREHAL-LAFTLG  144 (443)
T ss_pred             EEEEEEEEEECCCEEEEEEECCCHHHHHHHH------HHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHH-HHHHCC
T ss_conf             0734799994398899999899728889999------963410775899998677852134666786399999-999739


Q ss_pred             CCCE--EEEECCCC
Q ss_conf             4407--76411576
Q gi|254780711|r  242 LTGI--ILTRMDGD  253 (461)
Q Consensus       242 i~gi--IlTKlD~~  253 (461)
                      +..+  .+||+|--
T Consensus       145 v~~iIVaVNKmD~v  158 (443)
T PTZ00141        145 VKQIIVGINKMDTC  158 (443)
T ss_pred             CCEEEEEEEEECCC
T ss_conf             97599999962156


No 314
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.23  E-value=0.05  Score=35.69  Aligned_cols=152  Identities=18%  Similarity=0.224  Sum_probs=78.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECC-CCCCCH-----HHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             841899623443334688999999998614895078205-422100-----47799998510347422233210368999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASL-DVHRPA-----AQEQLRYLGEQIQVDTLEVIPEQSPEKIA  172 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~-Dt~R~a-----A~eQL~~~a~~~~v~~~~~~~~~dp~~i~  172 (461)
                      +-..|.++|-.|+||||.+-+|.++--.  -.+.+=|.+ ++-+.+     ..||-+      |+.+.++          
T Consensus         9 ~~RniaIi~H~dAGKTTLtE~lL~~~Ga--I~~~G~V~~~~~~~~~~sD~~~~E~~R------giSI~ss----------   70 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGA--IQEAGTVKGRKSGRHATSDWMEMEKQR------GISVTSS----------   70 (526)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC--CCCCCEEECCCCCCCCCCCCCHHHHHC------CCEEECC----------
T ss_conf             1177999937898989999999974675--244846631467886467885889975------9648615----------


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHH--HHCCCCCE-EEEE
Q ss_conf             99999997415886998334422211246899999985138511000310111225688889887--63584407-7641
Q gi|254780711|r  173 IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFD--KIVDLTGI-ILTR  249 (461)
Q Consensus       173 ~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~--~~~~i~gi-IlTK  249 (461)
                         +-.+.-+++-+=||||+|-.    +-..|...-.+++  |-.++|+||..|=++-. -+.|.  ..-++--+ .+.|
T Consensus        71 ---v~~~e~~~~~iNliDTPGh~----DF~~e~~raL~a~--D~Av~Vida~~GVe~qT-e~~w~~~~~~~iP~i~FINK  140 (526)
T PRK00741         71 ---VMQFPYRDCLINLLDTPGHE----DFSEDTYRTLTAV--DSALMVIDAAKGVEPQT-RKLMEVCRLRDTPIFTFINK  140 (526)
T ss_pred             ---EEEEEECCEEEEEEECCCCH----HHHHHHHHHHHHH--CEEEEEEECCCCCCHHH-HHHHHHHHHCCCCEEEEEEC
T ss_conf             ---17786789899999098946----7789999999873--75999997775523336-89999988639988999965


Q ss_pred             CCCC-CCCCHHH-HHHHHHCCCHH----HEECCCC
Q ss_conf             1576-6330367-77888478730----2615867
Q gi|254780711|r  250 MDGD-GRGGAAL-SMRTVTGKPIK----AIGTGEK  278 (461)
Q Consensus       250 lD~~-akgG~al-s~~~~~~~PI~----fig~GE~  278 (461)
                      ||-. +..-.+| ++....|..+.    =||.|+.
T Consensus       141 mDR~~ad~~~~l~ei~~~lg~~~~p~~~Pig~g~~  175 (526)
T PRK00741        141 LDRDGREPLELLDEIEEVLGIACAPITWPIGMGKR  175 (526)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             67678987898877888747873688830367886


No 315
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.23  E-value=0.058  Score=35.20  Aligned_cols=40  Identities=25%  Similarity=0.321  Sum_probs=27.3

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             02588418996234433346889999999986148950782
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMA  135 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv  135 (461)
                      +.-.+-.++.++|+|||||||.+-=|+..++-..|. +.+-
T Consensus        33 ~~I~~GEiv~LiG~nGaGKSTLlr~i~Gl~~p~~G~-I~~~   72 (257)
T PRK11247         33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPTAGD-LLAG   72 (257)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEEC
T ss_conf             588799899999899888999999996589888870-8989


No 316
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.23  E-value=0.023  Score=38.19  Aligned_cols=172  Identities=17%  Similarity=0.204  Sum_probs=90.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC----------------HHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             344333468899999999861489507820542210----------------0477999985103474222332103689
Q gi|254780711|r  107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP----------------AAQEQLRYLGEQIQVDTLEVIPEQSPEK  170 (461)
Q Consensus       107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~----------------aA~eQL~~~a~~~~v~~~~~~~~~dp~~  170 (461)
                      -+-|+|||-++.-||.+++. .|.+|++++=---|-                .+=|-+ .++..-++|++.+..   -. 
T Consensus        58 tvGGtGKTP~v~~la~~l~~-~g~~~~IlSRGYg~~~~~~~~v~~~~~~~~~vGDEpl-lla~~~~~~v~V~~~---R~-  131 (334)
T PRK00652         58 TVGGNGKTPVVIWLAEQLQA-RGVKVGVVSRGYGGKSKGYPLVLPADTTAAEVGDEPV-LIAQRTGAPVAVSPD---RV-  131 (334)
T ss_pred             EECCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCEEEECCCCCHHHCCCHHH-HHHHCCCCCEEEECC---HH-
T ss_conf             87887779999999999997-6993678734667656787276179998355186899-985178983999566---89-


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHH----HHHHHHHHHCCCCC
Q ss_conf             99999999974158869983344222112468999999851385110003101112--2568----88898876358440
Q gi|254780711|r  171 IAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG--QDAV----HLARNFDKIVDLTG  244 (461)
Q Consensus       171 i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~----~~a~~F~~~~~i~g  244 (461)
                         +|++++...++|+||.|-+=- |..             +++|--++|+|+..+  .+-+    .-.+-.+..-..+-
T Consensus       132 ---~~~~~l~~~~~dviIlDDGfQ-h~~-------------l~rdl~Ivlid~~~~fgn~~llP~GpLREp~~~l~rAD~  194 (334)
T PRK00652        132 ---KAIKALLALGADIIILDDGLQ-HYR-------------LHRDFEIVVVDGQRRFGNGWLLPAGPLREPPSRLKSADA  194 (334)
T ss_pred             ---HHHHHHHHCCCCEEEECCCCC-CCC-------------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCE
T ss_conf             ---999999965999999747665-664-------------468879999747767889867758656589647614689


Q ss_pred             EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             77641157663303677788847873026158672321001368899877358627889998742
Q gi|254780711|r  245 IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAAR  309 (461)
Q Consensus       245 iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~  309 (461)
                      +|+++-+.. ..-.......   ....-+-+++..+.+.   ..+ +-..-|.||...+.+-.++
T Consensus       195 ii~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~---~k~-v~afsGIanP~~F~~~L~~  251 (334)
T PRK00652        195 VIVNGGDAQ-EGEIPMRLAP---GAAVNLRTGESRDVLK---GKR-VVAFAGIGHPPRFFATLRN  251 (334)
T ss_pred             EEEECCCCC-CHHHHHHHCC---CCCEECCCCCCCCCCC---CCE-EEEEEECCCHHHHHHHHHH
T ss_conf             999388543-1104555365---6636766655463357---981-8999944886999999997


No 317
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22  E-value=0.15  Score=32.13  Aligned_cols=214  Identities=17%  Similarity=0.242  Sum_probs=111.4

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHH
Q ss_conf             588418996234433346889999999986148---950782054221004779999851034742223321-0368999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK---KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIA  172 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~---~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~  172 (461)
                      ..-|+-+||+|+.|+|||||+-=||+.+--.++   ..+  -.|...        +....-..++++..... ...++-+
T Consensus        35 ~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC--~~C~~C--------~~i~~g~~~Dv~Eidaas~~gvd~i  104 (541)
T PRK05563         35 NRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPC--NECEIC--------KKINEGLLMDVIEIDAASNNGVDDI  104 (541)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCCHHH--------HHHHCCCCCCEEEECCCCCCCHHHH
T ss_conf             993204530387995899999999999579998889857--514889--------9985689887366244444788999


Q ss_pred             HHHHHH---H-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHH----HHHHH------
Q ss_conf             999999---9-74158869983344222112468999999851385110003101112-256888----89887------
Q gi|254780711|r  173 IRATQS---A-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHL----ARNFD------  237 (461)
Q Consensus       173 ~~a~~~---a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~----a~~F~------  237 (461)
                      ++-.+.   + ....|-+.|||-+-.+..+.  +.-|.+..+.- |.+++|++ |+|- +....+    .+.|.      
T Consensus       105 R~~~~~~~~~p~~~~~Kv~IiDEvhmls~~a--~nallKtlEeP-p~~~~Fil-atte~~ki~~tI~SRcq~f~f~~i~~  180 (541)
T PRK05563        105 REIIENVKYPPQEGKYKVYIMDEVHMLSQGA--VNAFLKTLEEP-PSNVIFIL-ATTDPQKLPITILSRCQRFDFKRIKV  180 (541)
T ss_pred             HHHHHHCEECCCCCCEEEEEEECCCCCCHHH--HHHHHHHHHCC-CCCCEEEE-ECCCCCCCCHHHHHHEEEEEEEECCH
T ss_conf             9999761048767870599997723389999--99999998548-77756999-76984427455674213577543899


Q ss_pred             -------------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf             -------------635844----077641157663303677788847873026158672321001368899877358627
Q gi|254780711|r  238 -------------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV  300 (461)
Q Consensus       238 -------------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~  300 (461)
                                   +.+.++    .+|...-||+-|  -|||+-...   |.| |.| +++       ..-+..+||+-|-
T Consensus       181 ~~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmR--DAlslLdQ~---is~-~~~-~it-------~~~v~~~lG~~~~  246 (541)
T PRK05563        181 KDIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMR--DALSILDQA---ISM-GDG-KVD-------YDDVVSMLGLVTN  246 (541)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHHH---HHH-CCC-CCC-------HHHHHHHHCCCCH
T ss_conf             99999999999984999878999999974599778--899999999---983-599-866-------9999999689998


Q ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             889998742112678--99888653104637999999999
Q gi|254780711|r  301 VSLVEKAARNLNEKQ--AALTAKKIAKGKFDLEDLAEQFR  338 (461)
Q Consensus       301 ~~l~e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~Ql~  338 (461)
                      ..+.+-+....+.+.  +-....++...-.+...|++++-
T Consensus       247 ~~l~~l~~~i~~~d~~~~l~~~~~i~~~G~d~~~fl~dLi  286 (541)
T PRK05563        247 ENLFDITDSIIEKDIEKSMEIIDDIVLSGKDIYNFIKDLI  286 (541)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999999999858999999999999986999999999999


No 318
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.22  E-value=0.052  Score=35.57  Aligned_cols=188  Identities=15%  Similarity=0.167  Sum_probs=82.6

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf             025884189962344333468899999999861489-----507820542210047799998510347422233210368
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKK-----KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPE  169 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~-----kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~  169 (461)
                      +.-.+-..+.+||++||||||.+-=|+.+|.-..|.     ++.++.-|.|--.+     +..+  |+.+-.......-.
T Consensus        58 f~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~p~~G~I~~~g~i~~v~Q~~~lf~~-----Tire--NI~~g~~~~~~~~~  130 (282)
T cd03291          58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPG-----TIKE--NIIFGVSYDEYRYK  130 (282)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCC-----CHHH--HHHCCCCCCHHHHH
T ss_conf             9984999999999999819999999957872786589999999986574422671-----0999--97516886889999


Q ss_pred             HHHHHH-HHHHH---HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHHHHHHHH-----
Q ss_conf             999999-99997---415886998334422211246899999985138511000310-11122568888988763-----
Q gi|254780711|r  170 KIAIRA-TQSAR---DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLARNFDKI-----  239 (461)
Q Consensus       170 ~i~~~a-~~~a~---~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a~~F~~~-----  239 (461)
                      ++++.+ +....   .+++|.++-+ .|. ..... -.+.-.|.+++--+-.+|++| ++.+-|.....+.|...     
T Consensus       131 ~~~~~~~l~~~i~~lp~g~~t~vge-~G~-~LSGG-QkQRlaiARALl~~p~IliLDEpTS~LD~~tE~~I~~~~l~~~~  207 (282)
T cd03291         131 SVVKACQLEEDITKFPEKDNTVLGE-GGI-TLSGG-QRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM  207 (282)
T ss_pred             HHHHHHCCHHHHHHCCCCCCCEECC-CCC-CCCHH-HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999851499998463425523003-677-58999-99999999998428998998687766898789999999999986


Q ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC-----CCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf             5844077641157663303677788847873026158672-----321001368899877358627889
Q gi|254780711|r  240 VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI-----NDLENFFPDRIANRILGMGDVVSL  303 (461)
Q Consensus       240 ~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~-----~dle~F~p~~~~~riLGmgD~~~l  303 (461)
                      -+-|-+++|-     |    |+.... -=-|.++-.|+-+     +.|-.-+| .|++.+...+.+.-|
T Consensus       208 ~~kTvI~ItH-----r----L~~i~~-aDrIiVL~~G~Ive~Gth~ELm~~~g-~ya~~~~~~~~~~~~  265 (282)
T cd03291         208 ANKTRILVTS-----K----MEHLKK-ADKILILHEGSSYFYGTFSELQSLRP-DFSSKLMGYDTFDQF  265 (282)
T ss_pred             CCCEEEEEEC-----C----HHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC-HHHHHHHCCCCCCHH
T ss_conf             8998999937-----8----888986-99999998988999748899863497-899998537640011


No 319
>TIGR01188 drrA daunorubicin resistance ABC transporter, ATP-binding protein; InterPro: IPR005894   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family contains the daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. In other words it functions as an ATP dependent antiporter. .
Probab=96.22  E-value=0.0029  Score=45.14  Aligned_cols=56  Identities=25%  Similarity=0.306  Sum_probs=42.7

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH
Q ss_conf             100025884189962344333468899999999861489507820542210047799
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL  148 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL  148 (461)
                      .++++-..=.|+=|.||||+|||||+-=|+--++=..|. .-|..-|.-|=++--+.
T Consensus        13 gv~f~V~~G~vfGfLGPNGAGKTTti~mLtTll~P~sG~-A~V~GYDvvreP~kl~V   68 (343)
T TIGR01188        13 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLKPTSGT-ARVAGYDVVREPRKLKV   68 (343)
T ss_pred             CCCCEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCE-EEEEEEECCCCHHHCCC
T ss_conf             542053062489976879985133563410255799876-89983210236304032


No 320
>CHL00071 tufA elongation factor Tu
Probab=96.22  E-value=0.015  Score=39.75  Aligned_cols=127  Identities=20%  Similarity=0.211  Sum_probs=69.1

Q ss_pred             CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             25884-18996234433346889999999986148950782054221004779999851034742223321036899999
Q gi|254780711|r   96 NAPSP-LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR  174 (461)
Q Consensus        96 ~~~~p-~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~  174 (461)
                      ...+| -.|.++|-=-+||||.++-|...+... +..-+-      +....|++.. -+.-|+..       |   +   
T Consensus         7 ~~~k~~vni~~~GHVD~GKSTL~g~L~~~~~~~-~~~~~~------~~~~~D~~~e-Er~rGiTi-------d---~---   65 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAN-GGAKGK------KYDEIDSAPE-EKARGITI-------N---T---   65 (409)
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-CCHHHH------HHHHCCCCHH-HHHCCCEE-------E---E---
T ss_conf             689986999999545883999999986453004-513343------1553237976-87369448-------8---0---


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---H--HHHHHHHHHHHHCCCCCE-E-E
Q ss_conf             9999974158869983344222112468999999851385110003101112---2--568888988763584407-7-6
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---Q--DAVHLARNFDKIVDLTGI-I-L  247 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q--~a~~~a~~F~~~~~i~gi-I-l  247 (461)
                      +..++...++.+.+||++|--..=.++      |..+..+|-.+||+||..|   |  +....++    .+++.-+ + +
T Consensus        66 ~~~~~et~~~~~~~iD~PGH~~fv~nm------i~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~----~lgV~~~IVav  135 (409)
T CHL00071         66 AHVEYETENRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVSAADGPMPQTKEHILLAK----QVGVPNIVVFL  135 (409)
T ss_pred             CEEEEECCCEEEEEEECCCHHHHHHHH------HHHHCCCCCEEEEEECCCCCCCCHHHHHHHHH----HCCCCCEEEEE
T ss_conf             248996287599998679678999998------75230158128999868788500499999999----73999365555


Q ss_pred             EECCCC
Q ss_conf             411576
Q gi|254780711|r  248 TRMDGD  253 (461)
Q Consensus       248 TKlD~~  253 (461)
                      ||+|.-
T Consensus       136 nKmD~v  141 (409)
T CHL00071        136 NKEDQV  141 (409)
T ss_pred             ECCCCC
T ss_conf             567985


No 321
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=96.22  E-value=0.05  Score=35.70  Aligned_cols=146  Identities=17%  Similarity=0.191  Sum_probs=86.1

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      .-.|.++|-.-+||||---.|.-..++-+|. +                       ||.|- ...+.            +
T Consensus         3 ~i~IALvGNPN~GKSTLFN~LTG~~q~VgNw-P-----------------------GvTVE-kk~G~------------~   45 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW-A-----------------------GVTVE-RKEGQ------------F   45 (772)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCEEECC-C-----------------------CCEEE-EEEEE------------E
T ss_conf             3569988899878999999986899835789-9-----------------------76474-23899------------9


Q ss_pred             HHCCCCEEEEECCCCCCC----HHHHHHHHHHHH--HHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf             741588699833442221----124689999998--513851100031011122568888988763584-4077641157
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHI----NDSLMQEISEIK--SLTNPHEILLVADALTGQDAVHLARNFDKIVDL-TGIILTRMDG  252 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~----d~~lm~El~~i~--~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i-~giIlTKlD~  252 (461)
                      +.+++++-+||.+|-...    +++-++|.-...  ..-+||-++-|+||+.=.-..--+-..-+ +++ .=+.+..+|.
T Consensus        46 ~~~~~~~~ivDLPG~YSL~~~S~e~s~dE~Var~~ll~~~pDvvvnVvDAtnLeRnLyLt~QllE-lg~PvVvaLNM~D~  124 (772)
T PRK09554         46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLE-LGIPCIVALNMLDI  124 (772)
T ss_pred             EECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH-CCCCEEEEEECHHH
T ss_conf             96894699997997786999997777308999998613999899998016875442899999997-49998999877998


Q ss_pred             CCCCCHHH---HHHHHHCCCHHHE--ECCCCCCCCC
Q ss_conf             66330367---7788847873026--1586723210
Q gi|254780711|r  253 DGRGGAAL---SMRTVTGKPIKAI--GTGEKINDLE  283 (461)
Q Consensus       253 ~akgG~al---s~~~~~~~PI~fi--g~GE~~~dle  283 (461)
                      -.+-|.-+   ......|+|+.-+  -.|+.+++|.
T Consensus       125 A~~~Gi~ID~~~Ls~~LGvPVV~~~A~~g~Gi~eL~  160 (772)
T PRK09554        125 AEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALK  160 (772)
T ss_pred             HHHCCCEECHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf             988779328999999858998999827887999999


No 322
>KOG0734 consensus
Probab=96.20  E-value=0.069  Score=34.60  Aligned_cols=181  Identities=23%  Similarity=0.264  Sum_probs=99.6

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             99999871877421000258841899623443334688999999998614895078205422100477999985103474
Q gi|254780711|r   79 HDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD  158 (461)
Q Consensus        79 ~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~  158 (461)
                      .+|+++.|.....--.+..+-|.=||++|+.|.|||-    ||+-.                           |-..+||
T Consensus       316 LeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTl----LARAv---------------------------AGEA~VP  364 (752)
T KOG0734         316 LEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTL----LARAV---------------------------AGEAGVP  364 (752)
T ss_pred             HHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHH----HHHHH---------------------------HCCCCCC
T ss_conf             9999998609087643147588853876899975569----99986---------------------------0556897


Q ss_pred             CCCC-CCCCH------HHHHHHHHHHHHHHCCCCEEEEEC---CC--CCCCHHHHHH----HHHHHHHHCCCCCCCCCCC
Q ss_conf             2223-32103------689999999999741588699833---44--2221124689----9999985138511000310
Q gi|254780711|r  159 TLEV-IPEQS------PEKIAIRATQSARDGGYDAVILDT---AG--RNHINDSLMQ----EISEIKSLTNPHEILLVAD  222 (461)
Q Consensus       159 ~~~~-~~~~d------p~~i~~~a~~~a~~~~~D~iiiDT---aG--R~~~d~~lm~----El~~i~~~~~p~e~~lV~d  222 (461)
                      ||.. .++=|      -+.=+++-...|+.+.--+|+||-   .|  |.+.|...+.    +|--=.+-.+++|-+.|+-
T Consensus       365 FF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvig  444 (752)
T KOG0734         365 FFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIG  444 (752)
T ss_pred             EEECCCCCHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             47416620445422014899999999987349859997200220566786277899989999999842867688669995


Q ss_pred             HHCCHHHHHHHHH----HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC-
Q ss_conf             1112256888898----87635844077641157663303677788847873026158672321001368899877358-
Q gi|254780711|r  223 ALTGQDAVHLARN----FDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM-  297 (461)
Q Consensus       223 a~~Gq~a~~~a~~----F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm-  297 (461)
                      |+.=-++++.|-.    |...     |.+..-  |-+|-..+=-.|..++|.     +|.      -||+-+|.---|+ 
T Consensus       445 ATNfpe~LD~AL~RPGRFD~~-----v~Vp~P--Dv~GR~eIL~~yl~ki~~-----~~~------VD~~iiARGT~GFs  506 (752)
T KOG0734         445 ATNFPEALDKALTRPGRFDRH-----VTVPLP--DVRGRTEILKLYLSKIPL-----DED------VDPKIIARGTPGFS  506 (752)
T ss_pred             CCCCHHHHHHHHCCCCCCCEE-----EECCCC--CCCCHHHHHHHHHHCCCC-----CCC------CCHHHHCCCCCCCC
T ss_conf             168745556873488755336-----746897--733289999999834876-----567------78767226889876


Q ss_pred             -CCHHHHHHHHH
Q ss_conf             -62788999874
Q gi|254780711|r  298 -GDVVSLVEKAA  308 (461)
Q Consensus       298 -gD~~~l~e~~~  308 (461)
                       .|+.-||..|.
T Consensus       507 GAdLaNlVNqAA  518 (752)
T KOG0734         507 GADLANLVNQAA  518 (752)
T ss_pred             HHHHHHHHHHHH
T ss_conf             578998888999


No 323
>cd04167 Snu114p Snu114p subfamily.  Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle.  U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns.  Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2.  This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.20  E-value=0.041  Score=36.30  Aligned_cols=126  Identities=17%  Similarity=0.256  Sum_probs=67.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH--HCCCCEE--EECCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHH
Q ss_conf             8996234433346889999999986--1489507--82054221004779999851034-74222332103689999999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKT--LKKKKIL--MASLDVHRPAAQEQLRYLGEQIQ-VDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~--~~~~kV~--lv~~Dt~R~aA~eQL~~~a~~~~-v~~~~~~~~~dp~~i~~~a~  176 (461)
                      -|.++|--++||||-+-.|..+-..  ..+....  .-..|+   ...||-+...-... +.+.   . .+         
T Consensus         2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~---~~~E~eRgiTI~s~~~sl~---~-~~---------   65 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDI---RKDEQERGISIKSSPISLV---L-PD---------   65 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC---CHHHHHHCCCEECCEEEEE---E-EC---------
T ss_conf             599982789898999999999734455540444211357516---4665420355861459999---8-25---------


Q ss_pred             HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---HHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99974158869983344222112468999999851385110003101112---25688889887635844077641157
Q gi|254780711|r  177 QSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---QDAVHLARNFDKIVDLTGIILTRMDG  252 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q~a~~~a~~F~~~~~i~giIlTKlD~  252 (461)
                        .+.+.|-+-||||+|..    +...|...-.+++  |-.+||+||.-|   |.-...-.+..+.++ -=+++.|+|-
T Consensus        66 --~~~k~~~inlIDTPGH~----dF~~ev~~al~~~--DgailVVDa~eGv~~qT~~~l~~a~~~~l~-~ilviNKiDR  135 (213)
T cd04167          66 --SKGKSYLFNIIDTPGHV----NFMDEVAAALRLS--DGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDR  135 (213)
T ss_pred             --CCCCEEEEEEEECCCCH----HHHHHHHHHHHHC--CEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC
T ss_conf             --66750578778898724----1799999888637--767999987888757799999999986999-8999988234


No 324
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345   These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.20  E-value=0.033  Score=37.10  Aligned_cols=197  Identities=17%  Similarity=0.182  Sum_probs=109.0

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCC------------CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             8418996234433346889999999986148------------9507820542210047799998510347422233210
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK------------KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ  166 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~------------~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~  166 (461)
                      ...|.++.|=.|.||||++=-++..|...++            .+| +-||=|-|||  -||....-..-..+.+. -+.
T Consensus       364 ~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v-~LaAPTGrAA--kRl~E~TG~~a~TIHRL-lG~  439 (769)
T TIGR01448       364 QDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPV-VLAAPTGRAA--KRLAEVTGLEALTIHRL-LGY  439 (769)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE-EEECCCHHHH--HHCCCCCCCHHHHHHHH-HCC
T ss_conf             0948998577888616899999999987168775531245677648-8737743788--85110026212347786-368


Q ss_pred             HHHHHHHH-HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHC--CHHHHHHHHHHHHHCCC
Q ss_conf             36899999-99999741588699833442221124689999998513851-1000310111--22568888988763584
Q gi|254780711|r  167 SPEKIAIR-ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADALT--GQDAVHLARNFDKIVDL  242 (461)
Q Consensus       167 dp~~i~~~-a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da~~--Gq~a~~~a~~F~~~~~i  242 (461)
                      ++-.-..+ -++  ..-+||+||||=.+.  .|++|+..|   ..++.++ .+|||-|+--  -=++-.+-+.--++--+
T Consensus       440 ~~~~~~~~k~~~--~~~~~DL~IvDE~SM--~Dt~L~~~l---L~a~P~~a~lllVGD~DQLPSV~pG~VL~DLi~s~~i  512 (769)
T TIGR01448       440 GSDTKSENKNLE--DPIDADLLIVDESSM--VDTWLASSL---LAAVPDHARLLLVGDADQLPSVGPGQVLKDLIQSKVI  512 (769)
T ss_pred             CCCCCCCCHHHC--CCCCCCEEEEECCCH--HHHHHHHHH---HHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             988873211011--347877699814621--889999999---8617977779888376888988644089999846886


Q ss_pred             CCEEEEECCCCCCCCHHHHHHHHHCCCHH-HEECCCCCCCCCCCCHHH-HHHHHHCCCCHHHHHHHHH
Q ss_conf             40776411576633036777888478730-261586723210013688-9987735862788999874
Q gi|254780711|r  243 TGIILTRMDGDGRGGAALSMRTVTGKPIK-AIGTGEKINDLENFFPDR-IANRILGMGDVVSLVEKAA  308 (461)
Q Consensus       243 ~giIlTKlD~~akgG~als~~~~~~~PI~-fig~GE~~~dle~F~p~~-~~~riLGmgD~~~l~e~~~  308 (461)
                      --+=|||+=--+.+-.++...+....-.. .+-..+--.|+..+..+| ...  -+.+-+..+||++-
T Consensus       513 P~~~LT~vyRQ~~~S~Ii~~Ah~~~~G~~Pvlnss~~~~Df~~~~~~~s~~e--~~~~~i~~~v~~~~  578 (769)
T TIGR01448       513 PVTRLTKVYRQAEGSSIITLAHKILQGEAPVLNSSSAKKDFKFLKLDRSEPE--EAAKHIPLMVEKIV  578 (769)
T ss_pred             CEEECCCEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHH
T ss_conf             6121211124113664678889873178875232446766777764001010--66678999998877


No 325
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.19  E-value=0.13  Score=32.59  Aligned_cols=147  Identities=20%  Similarity=0.209  Sum_probs=82.5

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      +.-| .|+++|..-|||+|...|+-.       .+|=++. --|-          .+.+.|-.                 
T Consensus       166 p~~p-TivVaG~PNVGKSSlv~~lT~-------AkpEvA~-YPFT----------TK~i~vGh-----------------  209 (346)
T COG1084         166 PDLP-TIVVAGYPNVGKSSLVRKLTT-------AKPEVAP-YPFT----------TKGIHVGH-----------------  209 (346)
T ss_pred             CCCC-EEEEECCCCCCHHHHHHHHHC-------CCCCCCC-CCCC----------CCCEEEEE-----------------
T ss_conf             9997-389856998758999988754-------8976678-8853----------36546765-----------------


Q ss_pred             HHHHHCCCCEEEEECCCCCCCHHHHHHHHHH--HHHHCC-CCCCCCCCCHH--CCHHHHHHHHHHHHHCC----CCCEEE
Q ss_conf             9997415886998334422211246899999--985138-51100031011--12256888898876358----440776
Q gi|254780711|r  177 QSARDGGYDAVILDTAGRNHINDSLMQEISE--IKSLTN-PHEILLVADAL--TGQDAVHLARNFDKIVD----LTGIIL  247 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~--i~~~~~-p~e~~lV~da~--~Gq~a~~~a~~F~~~~~----i~giIl  247 (461)
                        +.....-+=+|||.|=+....+-|.++++  |..... -+-++|++|++  -|-.--.|.+-|++.-+    ..=+++
T Consensus       210 --fe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~  287 (346)
T COG1084         210 --FERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVI  287 (346)
T ss_pred             --EECCCCEEEEECCCCCCCCCHHHHCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             --504870589842886457885773689999999999742858999768500289999999999999985388769997


Q ss_pred             EECCCCCCCC---HHHHHHHHHCC-CHHHEECCCCCCC
Q ss_conf             4115766330---36777888478-7302615867232
Q gi|254780711|r  248 TRMDGDGRGG---AALSMRTVTGK-PIKAIGTGEKIND  281 (461)
Q Consensus       248 TKlD~~akgG---~als~~~~~~~-PI~fig~GE~~~d  281 (461)
                      +|.|-.....   ...++..+.+. |++-+.+.....|
T Consensus       288 nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  325 (346)
T COG1084         288 NKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLD  325 (346)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHH
T ss_conf             41012466678999999876326554313543000178


No 326
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19  E-value=0.025  Score=37.92  Aligned_cols=101  Identities=23%  Similarity=0.221  Sum_probs=56.1

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf             4189962344333468899999999861489507820542210047799998510347-422233210368999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV-DTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v-~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      -.++.++|+||+||||.+-=|+..+....| +|.+-..|..+..-    +.+.+.++. +=+ +..++--+.+     ..
T Consensus        25 Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G-~i~~~g~~~~~~~~----~~~~~~i~~v~QL-SgGqkqrv~i-----A~   93 (157)
T cd00267          25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAKLPL----EELRRRIGYVPQL-SGGQRQRVAL-----AR   93 (157)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCH----HHHHHCCCCCCCC-CHHHHHHHHH-----HH
T ss_conf             979999878899989999999588479962-89999999997999----9999406087668-8699999999-----99


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             9741588699833442221124689999998513
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLT  212 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~  212 (461)
                      +-..+-+++|.|-+- ...|..--.++.++.+..
T Consensus        94 al~~~p~ililDEPt-sgLD~~~~~~l~~~i~~l  126 (157)
T cd00267          94 ALLLNPDLLLLDEPT-SGLDPASRERLLELLREL  126 (157)
T ss_pred             HHHCCCCEEEEECCC-CCCCHHHHHHHHHHHHHH
T ss_conf             997099999996987-668999999999999999


No 327
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.19  E-value=0.08  Score=34.13  Aligned_cols=121  Identities=20%  Similarity=0.272  Sum_probs=60.7

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      ...| .|.++|=.-|||+|-+=.|.    .  .++++.++ ++  ||---         .+.+|..              
T Consensus        16 ~~~p-~IaivGrpNvGKSTL~N~L~----g--~k~~a~vs-~~--pGtTr---------~i~~~~~--------------   62 (179)
T TIGR03598        16 DDGP-EIAFAGRSNVGKSSLINALT----N--RKKLARTS-KT--PGRTQ---------LINFFEV--------------   62 (179)
T ss_pred             CCCC-EEEEECCCCCCHHHHHHHHH----C--CCCEEEEC-CC--CCEEE---------ECCEEEE--------------
T ss_conf             8897-89998699988899999986----8--98558970-89--97366---------0232010--------------


Q ss_pred             HHHHHCCCCEEEEECCCC-----CCCHHHHHHH-HHHHHHH-CCCCCCCCCCCHHCC--HHHHHHHHHHHHHCCC-CCEE
Q ss_conf             999741588699833442-----2211246899-9999851-385110003101112--2568888988763584-4077
Q gi|254780711|r  177 QSARDGGYDAVILDTAGR-----NHINDSLMQE-ISEIKSL-TNPHEILLVADALTG--QDAVHLARNFDKIVDL-TGII  246 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR-----~~~d~~lm~E-l~~i~~~-~~p~e~~lV~da~~G--q~a~~~a~~F~~~~~i-~giI  246 (461)
                            +.++++|||+|-     .....+.+.+ +...... -.-+-++||+||..|  ..-...++...+. +. -=++
T Consensus        63 ------~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~-~kp~iiv  135 (179)
T TIGR03598        63 ------NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDER-GIPVLIV  135 (179)
T ss_pred             ------CCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEE
T ss_conf             ------473699977760211278888999999999999998864302898743779989999999999975-9988999


Q ss_pred             EEECCCCCCCC
Q ss_conf             64115766330
Q gi|254780711|r  247 LTRMDGDGRGG  257 (461)
Q Consensus       247 lTKlD~~akgG  257 (461)
                      ++|.|--.+..
T Consensus       136 lNK~Dll~~~~  146 (179)
T TIGR03598       136 LTKADKLKKSE  146 (179)
T ss_pred             EECCCCCCHHH
T ss_conf             97813069899


No 328
>PRK00049 elongation factor Tu; Reviewed
Probab=96.19  E-value=0.024  Score=38.16  Aligned_cols=126  Identities=19%  Similarity=0.150  Sum_probs=69.6

Q ss_pred             CCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             884-1899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r   98 PSP-LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        98 ~~p-~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      .+| -.|.++|-=-+||||.++-|...+....++.-.-...      ..|+++.=-+ -|+.+-..             .
T Consensus         9 ~kp~~ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~------~~D~~~eEr~-rGiTid~~-------------~   68 (397)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYD------QIDNAPEEKA-RGITINTA-------------H   68 (397)
T ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHH------HCCCCHHHHH-CCCEEEEE-------------E
T ss_conf             99832999991258889999999986666543853100133------3025766762-58169987-------------9


Q ss_pred             HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---H--HHHHHHHHHHHHCCCCC-EE-EEE
Q ss_conf             99974158869983344222112468999999851385110003101112---2--56888898876358440-77-641
Q gi|254780711|r  177 QSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---Q--DAVHLARNFDKIVDLTG-II-LTR  249 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q--~a~~~a~~F~~~~~i~g-iI-lTK  249 (461)
                      .++..+++.+.+||++|--..=.++      |..+.+.|-.+||+||..|   |  +....+    ..+++.- +| +||
T Consensus        69 ~~~~t~~~~~~~iD~PGH~~fiknm------I~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~----~~LGv~~~iV~vnK  138 (397)
T PRK00049         69 VEYETEKRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVSAADGPMPQTREHILLA----RQVGVPYIVVFLNK  138 (397)
T ss_pred             EEEECCCCEEEEECCCCHHHHHHHH------HHHHCCCCEEEEEEECCCCCCHHHHHHHHHH----HHHCCCEEEEEEEC
T ss_conf             9997288149995178638889998------7301215679999974888665289999999----98099827999986


Q ss_pred             CCCC
Q ss_conf             1576
Q gi|254780711|r  250 MDGD  253 (461)
Q Consensus       250 lD~~  253 (461)
                      +|--
T Consensus       139 ~D~v  142 (397)
T PRK00049        139 CDMV  142 (397)
T ss_pred             CCCC
T ss_conf             6888


No 329
>PRK12740 elongation factor G; Reviewed
Probab=96.18  E-value=0.097  Score=33.50  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=36.5

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---HHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             158869983344222112468999999851385110003101112---25688889887635844077641157
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---QDAVHLARNFDKIVDLTGIILTRMDG  252 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q~a~~~a~~F~~~~~i~giIlTKlD~  252 (461)
                      +++-+=||||.|-  .|  -..|...-.+++  |-.++|+||.-|   |.-.-.-++....++. =+++.|+|-
T Consensus        58 ~~~~iNlIDTPGH--vD--F~~EV~~aLrv~--DgAvlvVDaveGV~~qT~~v~r~a~~~~lp~-ilvINKiDr  124 (670)
T PRK12740         58 KGHKINIIDTPGH--VD--FTGEVERALRVL--DGAVVVVCAVGGVEVQTETVWRYAEEYGVPR-IAFVNKLDR  124 (670)
T ss_pred             CCEEEEEEECCCC--CC--HHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCC
T ss_conf             9989999929797--51--489999999986--8689999789997378999999999879996-999979789


No 330
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.18  E-value=0.0089  Score=41.38  Aligned_cols=159  Identities=21%  Similarity=0.270  Sum_probs=84.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----------CHHHHHHHHHH---HC-----------C
Q ss_conf             18996234433346889999999986148950782054221-----------00477999985---10-----------3
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-----------PAAQEQLRYLG---EQ-----------I  155 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-----------~aA~eQL~~~a---~~-----------~  155 (461)
                      .+|.+.|=-|.|||||++-|++-|.. .|+||++|.||.-.           +--+|.|+...   +.           -
T Consensus         3 ~~iaiyGKGGIGKSTttaNlsaALA~-~GkkV~~IgcDPk~DsT~~L~g~~~~tild~l~~~~~~~~~~~~ed~~~~G~~   81 (269)
T PRK13185          3 LVLAVYGKGGIGKSTTSSNLSAALAK-LGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVFEGYN   81 (269)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHCCCCHHHCCHHHHHHCCCC
T ss_conf             39999789954788899999999997-69938998189973230112599878789999743876021256677633767


Q ss_pred             CCCCCCC---CCCC----HHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HC
Q ss_conf             4742223---3210----36899999999997-4158869983344222112468999999851385110003101--11
Q gi|254780711|r  156 QVDTLEV---IPEQ----SPEKIAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LT  225 (461)
Q Consensus       156 ~v~~~~~---~~~~----dp~~i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~  225 (461)
                      ++.++..   +++.    .-+..+.+-++... .+.||+|++|..|-----.=-| -+   .   ..++++.|.++  |.
T Consensus        82 gv~cvEaGGP~pG~GCaGrgi~~~~~~L~~~~~~~~~D~Vl~DvlgdVvCGGFa~-Pi---~---~Ad~~~IVts~e~~a  154 (269)
T PRK13185         82 GVDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGGFAA-PL---Q---YADYALIVTANDFDS  154 (269)
T ss_pred             CCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-CH---H---CCCEEEEEECCHHHH
T ss_conf             7056643899998776764318999999872874337879995367433365557-51---0---088899992530878


Q ss_pred             CHHHHHHHHHHHH-----HCCCCCEEEEECCCCCCCCHHH-HHHHHHCCCHH
Q ss_conf             2256888898876-----3584407764115766330367-77888478730
Q gi|254780711|r  226 GQDAVHLARNFDK-----IVDLTGIILTRMDGDGRGGAAL-SMRTVTGKPIK  271 (461)
Q Consensus       226 Gq~a~~~a~~F~~-----~~~i~giIlTKlD~~akgG~al-s~~~~~~~PI~  271 (461)
                      =.+|-+++..-++     .+.+.|+|.-+.++.    ..+ -.+..++.|+.
T Consensus       155 l~aAnnI~~~i~~~a~~~~~rl~GiI~Nr~~~~----d~v~~fa~~~g~~vl  202 (269)
T PRK13185        155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSGGT----DQIDKFNERVGLRTL  202 (269)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH----HHHHHHHHHHCCCEE
T ss_conf             999999999998653015853232576168837----799999998699769


No 331
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.17  E-value=0.084  Score=33.95  Aligned_cols=202  Identities=8%  Similarity=0.121  Sum_probs=86.3

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHH
Q ss_conf             58841899623443334688999999998614895078205422100477999985103474222332103-68999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQS-PEKIAIRA  175 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~d-p~~i~~~a  175 (461)
                      .+-|+..+|.|+.|+||||++..+|+.+-......  ...++.            +  .++.++.. .+.+ ...-..+.
T Consensus        17 ~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~--~~~~~~------------~--~~~~~id~-~~~~i~~~~i~~~   79 (303)
T PRK07132         17 NKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLN--LNLEEL------------P--YNIFLFDI-FDEDLSKEEFLSA   79 (303)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCC------------C--CCCEEECC-CCCCHHHHHHHHH
T ss_conf             99761688678998679999999999972998788--875456------------5--32304133-2220016889999


Q ss_pred             HHHHH-----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             99997-----4158869983344222112468999999851385110003101112256888898876358440776411
Q gi|254780711|r  176 TQSAR-----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRM  250 (461)
Q Consensus       176 ~~~a~-----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKl  250 (461)
                      ++.+.     ...+-++|||-|-++....  ..-|-+..+.- |..+++++-++--+....+...=++.+.+     .++
T Consensus        80 i~~~~~~~~~~~~~Kv~IIdea~~lt~~A--~NaLLKtLEEP-p~~~~fil~t~~~~~il~TI~SRCq~~~f-----~~~  151 (303)
T PRK07132         80 IEKFSFSSFVSNQKKILIIKNIEKTSNSS--LNALLKTIEEP-SKNTYFLLTTKNINKVIPTIVSRCQVINV-----KEP  151 (303)
T ss_pred             HHHHHHCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHCCCC-CCCEEEEEEECCHHHCCHHHHHCCEEEEC-----CCC
T ss_conf             99997366556870699981655339999--99999870389-86848999728824383778636656637-----889


Q ss_pred             CCCCCCCHHHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             57663303677788847873026158672-32100136889987735862788999874211267899888653104637
Q gi|254780711|r  251 DGDGRGGAALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTAKKIAKGKFD  329 (461)
Q Consensus       251 D~~akgG~als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~  329 (461)
                      +-.    .++          .|+- .+.. ++.+.|...-|.    ++|+...++.+--... ..+..+......+..++
T Consensus       152 ~~~----~i~----------~~l~-e~~~~~e~~~~~a~~~~----n~~~a~~~~~~e~~~~-~~~~~~~l~~~~~~~~~  211 (303)
T PRK07132        152 DQQ----KIL----------AKLL-SQNKEKEFEKFYAYIFK----NFEDAIKYISKISENL-VKKFIKALNKSLKEKYS  211 (303)
T ss_pred             CHH----HHH----------HHHH-HCCCCCHHHHHHHHHHC----CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf             999----999----------9998-64775278999999974----7588999986423999-99999999987411478


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999998511
Q gi|254780711|r  330 LEDLAEQFRQTQKI  343 (461)
Q Consensus       330 l~Df~~Ql~~i~km  343 (461)
                      +-.|+++.....++
T Consensus       212 ~~~fl~~~~~~~~~  225 (303)
T PRK07132        212 LLIFLNEKLNKENA  225 (303)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999988778479


No 332
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.16  E-value=0.056  Score=35.32  Aligned_cols=43  Identities=21%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             88418996234433346889999999986148950782054221
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR  141 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R  141 (461)
                      .+-.++.++|.|||||||.+-=|+..++-..| +|.+-.-|+.+
T Consensus        34 ~~Ge~vaivG~nGsGKSTLlk~l~Gll~p~~G-~I~v~G~~i~~   76 (273)
T PRK13632         34 NEGEYVAILGHNGSGKSTISKILTGLLKPQSG-EIKIFGITISK   76 (273)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf             49989999999998699999999738778887-59999999996


No 333
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=96.16  E-value=0.026  Score=37.89  Aligned_cols=199  Identities=19%  Similarity=0.195  Sum_probs=95.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---------------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             44333468899999999861489507820542210---------------047799998510347422233210368999
Q gi|254780711|r  108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---------------AAQEQLRYLGEQIQVDTLEVIPEQSPEKIA  172 (461)
Q Consensus       108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---------------aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~  172 (461)
                      +-|+|||-++..||.+++. .|.+|++++=---|-               .+=|.+ .++...++|++.+   .|-.+-+
T Consensus        45 ~GGtGKTP~v~~l~~~l~~-~g~~~~ilSRGYg~~~~~~~~v~~~~~~~~~GDEp~-lla~~~~~~v~V~---~~R~~a~  119 (318)
T pfam02606        45 VGGTGKTPLVIALAELLRA-RGLRPGVLSRGYGGKSKGPVLVDPGSSAAEVGDEPL-LLARRTPVPVVVG---PDRAAAA  119 (318)
T ss_pred             ECCCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCEEECCCCCHHHCCCHHH-HHHHHCCCCEEEC---CCHHHHH
T ss_conf             5887858999999999997-699447832676765788789716889467396999-9987569859980---5289999


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHH----HHHHHHHHHCCCCCEE
Q ss_conf             99999997415886998334422211246899999985138511000310111--22568----8889887635844077
Q gi|254780711|r  173 IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAV----HLARNFDKIVDLTGII  246 (461)
Q Consensus       173 ~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~----~~a~~F~~~~~i~giI  246 (461)
                      ..++   ...++|+||.|-+=- |..             +.+|--++|+|+.-  |.+-+    .--+-.+..-..+-+|
T Consensus       120 ~~l~---~~~~~dviIlDDGfQ-h~~-------------l~rDl~Ivl~d~~~~fgng~lLPaGpLREp~~~l~raD~ii  182 (318)
T pfam02606       120 RALL---EAHGADVIILDDGFQ-HYR-------------LARDLEIVVVDGARGFGNGRLLPAGPLREPLSRLKRADAVI  182 (318)
T ss_pred             HHHH---HHCCCCEEEECCCCC-CCC-------------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEE
T ss_conf             9999---848997999148666-730-------------01886899972887887997785813548965870039999


Q ss_pred             EEECCCCCCCCHHHHHHHHHCCCHHHE--ECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             641157663303677788847873026--1586723210013688998773586278899987421-1267899888653
Q gi|254780711|r  247 LTRMDGDGRGGAALSMRTVTGKPIKAI--GTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARN-LNEKQAALTAKKI  323 (461)
Q Consensus       247 lTKlD~~akgG~als~~~~~~~PI~fi--g~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~-~d~~~~~~l~~k~  323 (461)
                      +|+-+....-..-..+....-.|..+.  .+++ ..++.   ..+ +-.+-|.||...+.+-.++. ++--..   ..=-
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~---~~~-v~a~sGIanP~~F~~~L~~~g~~i~~~---~~f~  254 (318)
T pfam02606       183 LNGGEAADPEIAEAPVLRARLEPSAAVNLADGE-RRPLA---GKR-VLAFAGIGNPQRFFDTLRALGLEVVAT---LAFP  254 (318)
T ss_pred             ECCCCCCHHHHHHCCHHHEEEEEEEEEECCCCC-CCCCC---CCE-EEEEEECCCHHHHHHHHHHCCCEEEEE---EECC
T ss_conf             939853211344323011488500447427732-00016---984-899996478799999999769878786---7778


Q ss_pred             HCCCCCHHHHHHH
Q ss_conf             1046379999999
Q gi|254780711|r  324 AKGKFDLEDLAEQ  336 (461)
Q Consensus       324 ~~g~F~l~Df~~Q  336 (461)
                      -+-.|+-+|+.+=
T Consensus       255 DHh~y~~~dl~~i  267 (318)
T pfam02606       255 DHHPFTAADLAFL  267 (318)
T ss_pred             CCCCCCHHHHHHH
T ss_conf             8777999999999


No 334
>PRK08694 consensus
Probab=96.15  E-value=0.16  Score=31.88  Aligned_cols=114  Identities=22%  Similarity=0.216  Sum_probs=65.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC----HHHHHHHH
Q ss_conf             189962344333468899999999861489507820542210047799--998510347422233210----36899999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ----SPEKIAIR  174 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~----dp~~i~~~  174 (461)
                      ..|.+.|-.|.|||+.+--+|.....+++++|++.+..--+    +||  +.+|...+|+......+.    +-..+ ..
T Consensus       219 ~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~~fSLEMs~----~~l~~Rlla~~s~v~~~~i~~g~l~~~e~~~~-~~  293 (468)
T PRK08694        219 DLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMGG----AQLVMRMLGSVGRLDQSVLKTGRLEDEHWGRL-NE  293 (468)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCH----HHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHH-HH
T ss_conf             47999617865378999999999998479847997788999----99999999972598632110489999999999-99


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             9999974158869983344222112468999999851385110003101
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                      ++...  .+..+.|-||++....+  +....+++.+.-...--++|+|-
T Consensus       294 a~~~l--~~~pl~idd~~~~t~~~--i~a~~r~~~~~~~~kl~~vvIDY  338 (468)
T PRK08694        294 AVVKL--SDAPVYIDETPGLTALE--LRARARRLARQFNNKLGLIVIDY  338 (468)
T ss_pred             HHHHH--HCCCEEEECCCCCCHHH--HHHHHHHHHHHHCCCCCEEEEEH
T ss_conf             99998--62996897699998879--99999999998389873899736


No 335
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export.  They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins.  The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities.  The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14  E-value=0.051  Score=35.60  Aligned_cols=47  Identities=23%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             002588418996234433346889999999986148950782054221
Q gi|254780711|r   94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR  141 (461)
Q Consensus        94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R  141 (461)
                      ++.-.+-.++.++|.+||||||.+-=|+..+.-..| +|.+-..|.-.
T Consensus        22 sl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~   68 (171)
T cd03228          22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILIDGVDLRD   68 (171)
T ss_pred             EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf             899859989999999998399999999767758974-89999999885


No 336
>PRK08760 replicative DNA helicase; Provisional
Probab=96.14  E-value=0.16  Score=31.83  Aligned_cols=112  Identities=21%  Similarity=0.225  Sum_probs=68.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC----HHHHHHHH
Q ss_conf             189962344333468899999999861489507820542210047799--998510347422233210----36899999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ----SPEKIAIR  174 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~----dp~~i~~~  174 (461)
                      ..|.+.|-.|.|||+.+--+|.....+++++|++.+..--    .+||  +.+|...+|+......+.    +-..+ ..
T Consensus       230 ~LiViaaRPsmGKTalalnia~~~A~~~~~~V~~fSLEMs----~~ql~~Rlls~~s~v~~~~i~~g~l~~~e~~~~-~~  304 (476)
T PRK08760        230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS----ASQLAMRLISSNGRINAQRLRTGALEDEDWARV-TG  304 (476)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHH-HH
T ss_conf             7799987788747899999999999837997899703699----999999999983389767776489999999999-99


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             9999974158869983344222112468999999851385110003101
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                      ++....  +..+.|-||++-.. + .+-...+++++.-+++  ++|+|-
T Consensus       305 a~~~l~--~~~l~idD~~~~t~-~-~ir~~~R~~k~~~~l~--lvvIDY  347 (476)
T PRK08760        305 AIKMLK--ETKIFIDDTPGVSP-E-VLRSKCRRLKREHDLG--LIVIDY  347 (476)
T ss_pred             HHHHHH--HCCCEEECCCCCCH-H-HHHHHHHHHHHHCCCC--EEEEEH
T ss_conf             999986--08816857999999-9-9999999998727998--799970


No 337
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.13  E-value=0.16  Score=31.81  Aligned_cols=137  Identities=15%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      +.-.+-+||+|+.|+||||++--+|..+--.+.-....-.|..-|-      -.-+..-+|.++.....+=.++-+++-+
T Consensus        36 ~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~------i~~g~hpDv~~i~p~~~~i~id~iR~l~  109 (395)
T PRK07940         36 SGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRT------VLAGTHPDVRVVVPEGLSIGVDEVREIV  109 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH------HHCCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             8766037636899878899999999996699999999987878999------8768998718982687768899999999


Q ss_pred             HHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC
Q ss_conf             9997----41588699833442221124689999998513851100031011122568888988763584
Q gi|254780711|r  177 QSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDL  242 (461)
Q Consensus       177 ~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i  242 (461)
                      +.+.    ..+|-|+|||-|-|+....  ..-|-|..+. .|..++|++=++.-+.-..++..=.+.+.+
T Consensus       110 ~~~~~~p~~~~~kv~ii~~a~~m~~~a--~NalLKtLEE-Pp~~~~fiL~t~~~~~llpTI~SRcq~~~f  176 (395)
T PRK07940        110 QIAARRPTTGRWRIVVIEDADRLTERA--ANALLKAVEE-PPPRTVWLLCAPSVEDVLPTIRSRCRHVAL  176 (395)
T ss_pred             HHHHHCCCCCCCEEEEEECHHHHCHHH--HHHHHHHHCC-CCCCEEEEEEECCHHHHHHHHHHHHEECCC
T ss_conf             998527303795599980778748999--9999985217-888869998739978744688744000237


No 338
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.13  E-value=0.015  Score=39.66  Aligned_cols=76  Identities=36%  Similarity=0.491  Sum_probs=48.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC--CCCCCCCHHH---HHHHHHH
Q ss_conf             8996234433346889999999986148950782054221004779999851034742--2233210368---9999999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT--LEVIPEQSPE---KIAIRAT  176 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~--~~~~~~~dp~---~i~~~a~  176 (461)
                      +|-+-|+.||||||-+.+||.+|    |.+ .+-+.++||-=|.+        .|.++  |....++||-   .|-+...
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~----gl~-~vsaG~iFR~~A~e--------~gmsl~ef~~~AE~~p~iD~~iD~rq~   68 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHL----GLK-LVSAGTIFREMARE--------RGMSLEEFSRYAEEDPEIDKEIDRRQK   68 (179)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHH----CCC-EEECCHHHHHHHHH--------CCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             79961799997027999999982----971-56212799999998--------399999999987519216699889999


Q ss_pred             HHHHHCCCCEEEEECCCCC
Q ss_conf             9997415886998334422
Q gi|254780711|r  177 QSARDGGYDAVILDTAGRN  195 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR~  195 (461)
                      +.++  .-|+|+   .||+
T Consensus        69 e~a~--~~nvVl---egrL   82 (179)
T COG1102          69 ELAK--EGNVVL---EGRL   82 (179)
T ss_pred             HHHH--CCCEEE---HHHH
T ss_conf             9987--289587---0045


No 339
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.11  E-value=0.071  Score=34.53  Aligned_cols=214  Identities=17%  Similarity=0.142  Sum_probs=100.1

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC---------------
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233---------------
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI---------------  163 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~---------------  163 (461)
                      +--++.++|+|||||||.+-=|+..+.-..|. |.+-.-|+-+.. .   +.+.+++++= |..+               
T Consensus        32 ~GE~vaivG~nGsGKSTL~k~l~Gl~~p~~G~-I~i~G~~i~~~~-~---~~lr~~ig~V-fQ~P~~~l~~~tV~e~iaf  105 (279)
T PRK13635         32 EGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT-ITVGGMVLSEET-V---WDVRKQIGMV-FQNPDNQFVGTTVQDDVAF  105 (279)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCC-H---HHHHHHEEEE-ECCHHHHCCCCHHHHHHHH
T ss_conf             99899999999965999999997288888964-999999998578-7---9997436688-2185652576268999988


Q ss_pred             ----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHHHHH-
Q ss_conf             ----210368999999999974158869983344222112-46899999985138511000310-11122568888988-
Q gi|254780711|r  164 ----PEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIND-SLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLARNF-  236 (461)
Q Consensus       164 ----~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~-~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a~~F-  236 (461)
                          .+....++. +.+..+-.. .+  +-+-+.|.+.+= .=..+--.|.++.-.+--+|++| .++|.|...+.+.+ 
T Consensus       106 gl~~~g~~~~e~~-~rv~~~l~~-~g--l~~~~~~~p~~LSGGQrQRvaIAraL~~~P~iLilDEPTs~LD~~~~~~i~~  181 (279)
T PRK13635        106 GLENIGVPREEMV-ERVDQALRQ-VG--MEDFLNREPHRLSGGQKQRVAIAGVLALQPDILILDEATSMLDPQGRREVLE  181 (279)
T ss_pred             HHHHCCCCHHHHH-HHHHHHHHH-CC--CHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf             9987799999999-999999987-79--9788617934399999999999999970999899738745489899999999


Q ss_pred             -----HHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCC-CHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             -----763584407764115766330367778884787302615867232---1001-3688998773586278899987
Q gi|254780711|r  237 -----DKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENF-FPDRIANRILGMGDVVSLVEKA  307 (461)
Q Consensus       237 -----~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F-~p~~~~~riLGmgD~~~l~e~~  307 (461)
                           ++.-++|-+++|- |        ++.+.. .--|.++--|+-+.+   =|.| +|+.+...=|--..+..|.+..
T Consensus       182 ~l~~L~~~~g~TvI~itH-d--------l~~~~~-aDRiivm~~G~Iv~~Gtp~elf~~~~~l~~~~l~~P~~~~l~~~l  251 (279)
T PRK13635        182 TVRQLKEQKGITVLSITH-D--------LDEAAQ-ADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGLDVPFSVKLKELL  251 (279)
T ss_pred             HHHHHHHCCCCEEEEEEE-C--------HHHHHC-CCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf             999999837989999976-7--------899963-998999989999998699999779889997799999499999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             4211267899888653104637999999999985
Q gi|254780711|r  308 ARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQ  341 (461)
Q Consensus       308 ~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~  341 (461)
                      +..         --.+....+|.+++.+.+.++.
T Consensus       252 ~~~---------g~~~~~~~~t~~~~~~~l~~~~  276 (279)
T PRK13635        252 KRN---------GILLPNTHLTMESLVDELWTLH  276 (279)
T ss_pred             HHC---------CCCCCCCCCCHHHHHHHHHHHH
T ss_conf             975---------9999988889999999999874


No 340
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.11  E-value=0.045  Score=36.02  Aligned_cols=197  Identities=14%  Similarity=0.152  Sum_probs=89.1

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-----------
Q ss_conf             884189962344333468899999999861489507820542210047799998510347422233210-----------
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-----------  166 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-----------  166 (461)
                      .+-.++.++|.|||||||.+-=|+-.+.-..| +|.+-..|......-..++.+.+.+|+-| .....+           
T Consensus        31 ~~Ge~~aiiG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~iG~vf-Q~p~~ql~~~tV~eev~  108 (280)
T PRK13649         31 LDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTG-IVSVDDTDITSHSKNKEIKSIRKKVGLVF-QFPESQLFEETVLKDVA  108 (280)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCCHHHHHHHHHHEEEEE-ECCCCCCCCCHHHHHHH
T ss_conf             79989999959998699999999669998860-89999999877782013999987646997-46521236030999998


Q ss_pred             --------HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCH-HCCHHHHHH----
Q ss_conf             --------3689999999999741588699833442221124-68999999851385110003101-112256888----
Q gi|254780711|r  167 --------SPEKIAIRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADA-LTGQDAVHL----  232 (461)
Q Consensus       167 --------dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da-~~Gq~a~~~----  232 (461)
                              .+.++-..+.+.+..-+.+-   +-..|++.+=. =..+--.|..+.--+--+|++|= ++|.|....    
T Consensus       109 fg~~~~g~~~~e~~~~v~~~l~~~gL~e---~~~~r~p~~LSGGqkqRvaiA~aL~~~P~iLllDEPTsgLDp~~~~~i~  185 (280)
T PRK13649        109 FGPQNFGVSPEEAEALAREKLALVGISE---NLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM  185 (280)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCCCH---HHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             6898869999999999999998769974---6654290009999999999999997499999984875548999999999


Q ss_pred             --HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCCC-HHHHHHHHHCCCCHHHHHHH
Q ss_conf             --8988763584407764115766330367778884787302615867232---10013-68899877358627889998
Q gi|254780711|r  233 --ARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENFF-PDRIANRILGMGDVVSLVEK  306 (461)
Q Consensus       233 --a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F~-p~~~~~riLGmgD~~~l~e~  306 (461)
                        .+..++. +.|=+++|- |        +..+...---|..+--|+-+.+   -|.|. |+..-..=|+...+..+.++
T Consensus       186 ~ll~~l~~~-G~Tii~vTH-d--------l~~v~~~aDrv~vl~~G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~~~~~  255 (280)
T PRK13649        186 TIFKKLHQS-GMTIVLVTH-L--------MDDVANYADFVYVLEKGKIVLSGKPKDIFQQVSFLEKKQLGVPKITKFAQR  255 (280)
T ss_pred             HHHHHHHHC-CCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHH
T ss_conf             999999863-999999875-8--------999999799999998999999878999975989998779999919999999


Q ss_pred             HHH
Q ss_conf             742
Q gi|254780711|r  307 AAR  309 (461)
Q Consensus       307 ~~~  309 (461)
                      .++
T Consensus       256 L~~  258 (280)
T PRK13649        256 LVD  258 (280)
T ss_pred             HHH
T ss_conf             997


No 341
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.11  E-value=0.0017  Score=46.95  Aligned_cols=173  Identities=16%  Similarity=0.198  Sum_probs=83.5

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC-------CCCCCC
Q ss_conf             1000258841899623443334688999999998614895078205422100477999985103474-------222332
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD-------TLEVIP  164 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~-------~~~~~~  164 (461)
                      ++.+.-.+-.++.|+|+||+|||||+-=|--.+.-..| +|.+..-|-||     +=+.|-..++.-       .| .-+
T Consensus        42 disf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G-~v~V~G~~Pf~-----~~~~~~~~~~~v~gqk~ql~W-dlp  114 (325)
T COG4586          42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG-KVRVNGKDPFR-----RREEYLRSIGLVMGQKLQLWW-DLP  114 (325)
T ss_pred             EEEEECCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCC-EEEECCCCCCH-----HHHHHHHHHHHHHHHHHEEEE-ECH
T ss_conf             11453489868988758888603339897386036887-58745868523-----379999887887632220256-230


Q ss_pred             CCHHHHHHH-----------HHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHH
Q ss_conf             103689999-----------99999974-158869983344222112468999999851385110003101112256888
Q gi|254780711|r  165 EQSPEKIAI-----------RATQSARD-GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHL  232 (461)
Q Consensus       165 ~~dp~~i~~-----------~a~~~a~~-~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~  232 (461)
                      -.|...|.+           +-++.+.. -..+-.|=+-.-|+..-+.+--||  ......|-+++|.-.-++|-|...+
T Consensus       115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeL--aaaLLh~p~VLfLDEpTvgLDV~aq  192 (325)
T COG4586         115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAEL--AAALLHPPKVLFLDEPTVGLDVNAQ  192 (325)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH--HHHHCCCCCEEEECCCCCCCCHHHH
T ss_conf             25469999999719889999999889998632456401356536057889999--9985689838974487457514389


Q ss_pred             H--HHHHHHCC---CCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC
Q ss_conf             8--98876358---4407764115766330367778884787302615867232
Q gi|254780711|r  233 A--RNFDKIVD---LTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND  281 (461)
Q Consensus       233 a--~~F~~~~~---i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d  281 (461)
                      +  +.|-+..+   =..|.+|--|=    +.    ....---|.-|-.|+-++|
T Consensus       193 ~~ir~Flke~n~~~~aTVllTTH~~----~d----i~~lc~rv~~I~~Gqlv~d  238 (325)
T COG4586         193 ANIREFLKEYNEERQATVLLTTHIF----DD----IATLCDRVLLIDQGQLVFD  238 (325)
T ss_pred             HHHHHHHHHHHHHHCCEEEEEECCH----HH----HHHHHHHEEEEECCCEEEC
T ss_conf             9999999998775373699984112----13----8886343699607828645


No 342
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.11  E-value=0.039  Score=36.48  Aligned_cols=164  Identities=21%  Similarity=0.260  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             99999999871877421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r   76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI  155 (461)
Q Consensus        76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~  155 (461)
                      .-+++++.+.|.....+.. ....+--|.++|=.-|||.|-+-.|.    . +.+  ++|+ |.  ||            
T Consensus       149 ~~L~~~i~~~l~~~~~~~~-~~~~~iriaivGrPNvGKSTl~N~ll----~-~~r--~ivs-~~--~G------------  205 (429)
T TIGR03594       149 GDLLDAILELLPEEEEEEE-EEDGPIKIAIIGRPNVGKSTLVNALL----G-EER--VIVS-DI--AG------------  205 (429)
T ss_pred             HHHHHHHHHHCCCCCCCCC-CCCCCEEEEEECCCCCCHHHHHHHHH----H-HHH--HHCC-CC--CC------------
T ss_conf             9999999965886655543-45565269997488765467777765----4-333--2147-99--98------------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-----HHHHHHHHHHHHHCCCCCCCCCCCHHCC---H
Q ss_conf             4742223321036899999999997415886998334422211-----2468999999851385110003101112---2
Q gi|254780711|r  156 QVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIN-----DSLMQEISEIKSLTNPHEILLVADALTG---Q  227 (461)
Q Consensus       156 ~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d-----~~lm~El~~i~~~~~p~e~~lV~da~~G---q  227 (461)
                       .       -.|++...      +..++..+.+|||||-....     -+.+.-.+.+...-..|-++||+||.-|   |
T Consensus       206 -t-------TrD~i~~~------~~~~~~~~~~iDTaGirkk~k~~~~~e~~s~~~t~~~i~~~dvvil~iD~~~~~~~q  271 (429)
T TIGR03594       206 -T-------TRDSIDIP------FERNGKKYLLIDTAGIRRKGKVTEGIEKYSVLRTLKAIERADVVLLVLDATEGITEQ  271 (429)
T ss_pred             -C-------CCCCEEEE------EEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHH
T ss_conf             -6-------31026879------999990899998988763664230477999999999987447799999766588488


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH--------HHHHHHHCCCHHHEECCC
Q ss_conf             56888898876358440776411576633036--------777888478730261586
Q gi|254780711|r  228 DAVHLARNFDKIVDLTGIILTRMDGDGRGGAA--------LSMRTVTGKPIKAIGTGE  277 (461)
Q Consensus       228 ~a~~~a~~F~~~~~i~giIlTKlD~~akgG~a--------ls~~~~~~~PI~fig~GE  277 (461)
                      |. ..|..-.+.----=+++-|.|--..--..        -.......+||.|++.=.
T Consensus       272 D~-~i~~~i~~~~k~~ii~~NK~Dli~~~~~~~~~~~~i~~~l~~~~~~pI~fiSA~~  328 (429)
T TIGR03594       272 DL-RIAGLALEAGKALIIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALT  328 (429)
T ss_pred             HH-HHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf             89-9999898739976999972230379999999999999856236898689973457


No 343
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=96.10  E-value=0.0049  Score=43.36  Aligned_cols=37  Identities=22%  Similarity=0.196  Sum_probs=29.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             89962344333468899999999861489507820542
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV  139 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt  139 (461)
                      +|.++|..||||||.+-+|+..|.. .+.++..++.|.
T Consensus         1 iIgIaG~SgSGKTT~a~~L~~~l~~-~~~~~~~~~~d~   37 (196)
T pfam00485         1 IIGVAGSSGAGKTTVARTFVSIFGR-EGVPAAGIEGDS   37 (196)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCCCCCEE
T ss_conf             9899899857199999999999660-587764124317


No 344
>KOG0920 consensus
Probab=96.10  E-value=0.063  Score=34.91  Aligned_cols=136  Identities=18%  Similarity=0.181  Sum_probs=86.8

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC----CCC-CCCCCCC-----HHH
Q ss_conf             418996234433346889999999986148950782054221004779999851034----742-2233210-----368
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ----VDT-LEVIPEQ-----SPE  169 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~----v~~-~~~~~~~-----dp~  169 (461)
                      -.|++..|=+|+||||-+-..-.-..-..+..+-++++--.|++|+.=-+-.|..-+    -++ |...-++     ...
T Consensus       188 ~qVvvIsGeTGcGKtTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L  267 (924)
T KOG0920         188 NQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRSRETRL  267 (924)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEE
T ss_conf             96699957889871224669999999862899738866775177899999998875466687136898620136775168


Q ss_pred             -----HHHHHHHHH-HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC
Q ss_conf             -----999999999-974158869983344222112468999999851385110003101112256888898876358
Q gi|254780711|r  170 -----KIAIRATQS-ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD  241 (461)
Q Consensus       170 -----~i~~~a~~~-a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~  241 (461)
                           -|..+-+.. ....++-.||+|+.---+.+.+.+--+.+..-.-+|+-.+..+.||.-      |+.|.++++
T Consensus       268 ~fcTtGvLLr~L~~~~~l~~~thiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~d------ae~fs~YF~  339 (924)
T KOG0920         268 LFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLD------AELFSDYFG  339 (924)
T ss_pred             EEECHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECC------HHHHHHHHC
T ss_conf             984068999875468621458665442279716775217999998862288856998621126------288898718


No 345
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.09  E-value=0.044  Score=36.12  Aligned_cols=32  Identities=3%  Similarity=0.109  Sum_probs=18.6

Q ss_pred             CCCCCCHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q ss_conf             84113357899972326-679899999999999
Q gi|254780711|r  390 NPSIIKHSRKKRIAAGS-GTNAAKINKLLKLHR  421 (461)
Q Consensus       390 ~P~ll~~SR~~RIA~GS-G~~v~eVn~Llk~f~  421 (461)
                      +|.|+++|=+.-|+-|. ..+.+|+.+.+++-.
T Consensus       423 ~~~LF~~TI~eNi~~g~~~atdee~~~al~~a~  455 (575)
T PRK11160        423 RVHLFSGTLRDNLLLAAPNATDEALIEVLQQVG  455 (575)
T ss_pred             CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf             760258867899872589878999999997537


No 346
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.09  E-value=0.092  Score=33.65  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             189962344333468899999999861489507820542
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV  139 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt  139 (461)
                      ..+.+||++||||||-+-=|+.+|.-..|. +.+-..|.
T Consensus       369 ~~vaiVG~SGsGKSTL~~LL~gly~p~~G~-I~idg~di  406 (581)
T PRK11176        369 KTVALVGRSGSGKSTIANLLTRFYDIDEGE-ILLDGHDL  406 (581)
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHCCCCCCE-EEECCEEH
T ss_conf             443122899986789999998536678874-87898851


No 347
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake.  NatB possess six putative membrane spanning regions at its C-terminus.  In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane.  The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system.  Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.09  E-value=0.055  Score=35.39  Aligned_cols=49  Identities=27%  Similarity=0.259  Sum_probs=34.2

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             00025884189962344333468899999999861489507820542210
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP  142 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~  142 (461)
                      +.+.-.+-.++-++|+|||||||++-=|+-.++-..| .|.+-..|....
T Consensus        24 vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~~G-~i~i~G~d~~~~   72 (218)
T cd03266          24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG-FATVDGFDVVKE   72 (218)
T ss_pred             CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCC
T ss_conf             2789859829999999998499999999779778974-899999998869


No 348
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.08  E-value=0.06  Score=35.09  Aligned_cols=191  Identities=13%  Similarity=0.090  Sum_probs=84.4

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-------CC----------
Q ss_conf             8418996234433346889999999986148950782054221004779999851034742-------22----------
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-------LE----------  161 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-------~~----------  161 (461)
                      +-.++.++|+|||||||.+-=|+..++-..| +|.+-..|+.+.. ..++   ...++.-+       |.          
T Consensus        30 ~Ge~~aiiG~NGsGKSTLl~~l~Gl~~p~~G-~I~i~G~~i~~~~-~~~l---r~~iG~vfQ~p~~ql~~~tV~e~v~fg  104 (273)
T PRK13647         30 EGSKTAILGPNGAGKSTLLLHLNGIYTAQRG-RVKVMGKVVNEEN-IRWI---RKKVGLVFQDPDDQLFSSTVWDDVAFG  104 (273)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCC-HHHH---HHHCEEEECCCHHHHCCCHHHHHHHHH
T ss_conf             9989999999997599999999669888861-9999999999689-8999---875248810702430524199999999


Q ss_pred             -CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHH-----
Q ss_conf             -332103689999999999741588699833442221124-6899999985138511000310-11122568888-----
Q gi|254780711|r  162 -VIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLA-----  233 (461)
Q Consensus       162 -~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a-----  233 (461)
                       ...+-++.++..+ ++.+-+ ..+  |-|-+.|...+=. =..+.-.|..++-.+--+|++| .+.|.|.....     
T Consensus       105 ~~~~g~~~~e~~~r-v~~~L~-~~~--l~~~~~~~p~~LSGGqkqRvaiA~aL~~~P~lliLDEPtagLDp~~~~~l~~~  180 (273)
T PRK13647        105 PQNLELDKKEILRR-VEEALK-AVD--MWDLREKAPYHLSYGQKKRVAIAGVLAMEPDIIVLDEPMAYLDPRGKEELTAI  180 (273)
T ss_pred             HHHCCCCHHHHHHH-HHHHHH-HCC--CHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             98859999999999-999998-779--58766479333999899999999999819999999797657999999999999


Q ss_pred             -HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             -9887635844077641157663303677788847873026158672321---00136889987735862788999874
Q gi|254780711|r  234 -RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENFFPDRIANRILGMGDVVSLVEKAA  308 (461)
Q Consensus       234 -~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F~p~~~~~riLGmgD~~~l~e~~~  308 (461)
                       +..++. +.|=+++| -|        +..+...---|.++.-|+-+.|=   +.++++.+-..=|....+..+.+..+
T Consensus       181 l~~L~~~-G~Tvi~vt-Hd--------l~~~~~~aDrvivl~~G~Iv~~Gtp~~~~~~~~l~~~gl~~P~~~~~~~~l~  249 (273)
T PRK13647        181 LNRLNNE-GKTVIVAT-HD--------VDLALEWADQVVVLNAGRVVAQGDKSILTDRQLLEEAGLKAPLLVQIFEDFE  249 (273)
T ss_pred             HHHHHHC-CCEEEEEE-CC--------HHHHHHHCCEEEEEECCEEEEECCHHHHCCHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             9999848-99999994-17--------8999996999999989999998294793999999986999987999999988


No 349
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis.  The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes.  CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space.  In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.08  E-value=0.06  Score=35.06  Aligned_cols=48  Identities=27%  Similarity=0.304  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             0025884189962344333468899999999861489507820542210
Q gi|254780711|r   94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP  142 (461)
Q Consensus        94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~  142 (461)
                      ++.-.+-..+.++|++||||||.+-=|+..+.-..| +|.+-..|....
T Consensus        22 ~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G-~i~i~g~~i~~~   69 (178)
T cd03247          22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EITLDGVPVSDL   69 (178)
T ss_pred             EEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCC-EEEECCEEHHHH
T ss_conf             899869999999999987599999999861766788-699999988997


No 350
>PRK13974 thymidylate kinase; Provisional
Probab=96.08  E-value=0.083  Score=34.02  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=23.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             899623443334688999999998614
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLK  128 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~  128 (461)
                      -|.|-|+-||||||-+.+|+.||...+
T Consensus         5 fIv~EGiDGsGKsTq~~~L~~~L~~~g   31 (212)
T PRK13974          5 FIVLEGIDGCGKTTQIDHLSKWLPSSG   31 (212)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             999889999989999999999998658


No 351
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.05  E-value=0.024  Score=38.17  Aligned_cols=156  Identities=24%  Similarity=0.313  Sum_probs=71.3

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC-----------CCCHHHHHHHHHHHCCCCCCCCCCC---
Q ss_conf             84189962344333468899999999861489507820542-----------2100477999985103474222332---
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV-----------HRPAAQEQLRYLGEQIQVDTLEVIP---  164 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt-----------~R~aA~eQL~~~a~~~~v~~~~~~~---  164 (461)
                      +|.+|+++||+|||||.-+-.||..+      ..-+|+||.           =+|-.-||-.+--  .-+.++....   
T Consensus         3 ~~~ii~i~GpTasGKs~la~~la~~~------~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~H--hli~~~~~~e~~s   74 (304)
T PRK00091          3 KPKLIVLVGPTASGKTALAIELAKRL------NGEIISVDSMQVYRGMDIGTAKPTAEELAGVPH--HLIDILDPTESYS   74 (304)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHC------CCEEEEECHHHHHCCCCEEECCCCHHHHCCCCC--EEEEEECCCCCEE
T ss_conf             99779998988658999999999987------998994126887499986889999999818981--2434565887544


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH-----HHHHHH
Q ss_conf             103689999999999741588699833442221124689999998513851100031011122568888-----988763
Q gi|254780711|r  165 EQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA-----RNFDKI  239 (461)
Q Consensus       165 ~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a-----~~F~~~  239 (461)
                      ..+=..-|...++....++.-.|||  -|-.-+=..|+.-+..+     |.     .|..+-++.....     ..+++.
T Consensus        75 v~~f~~~a~~~i~~i~~~~kiPIiV--GGTglYl~aLl~g~~~~-----p~-----~~~~ir~~l~~~~~~~g~~~l~~~  142 (304)
T PRK00091         75 AADFQRDALAAIEDITARGKLPILV--GGTGLYFKALLEGLSFL-----PP-----ADPEVRAELEALAAEEGWEALHAE  142 (304)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEE--CCCHHHHHHHHCCCCCC-----CC-----CCHHHHHHHHHHHHHHCHHHHHHH
T ss_conf             9999999999999999769987898--08389999997187778-----88-----898999999999997589999999


Q ss_pred             -CCCCCEEEEECCC--CCCCCHHHHHHHHHCCCHHHEE
Q ss_conf             -5844077641157--6633036777888478730261
Q gi|254780711|r  240 -VDLTGIILTRMDG--DGRGGAALSMRTVTGKPIKAIG  274 (461)
Q Consensus       240 -~~i~giIlTKlD~--~akgG~als~~~~~~~PI~fig  274 (461)
                       ..+|-....++|.  ..|-==||.+...||.|+...-
T Consensus       143 L~~~Dp~~a~~I~~nd~~Rl~RAlEv~~~tGk~~s~~~  180 (304)
T PRK00091        143 LAEIDPVAAARIHPNDPQRIIRALEVYELTGKPLSELQ  180 (304)
T ss_pred             HHHHCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             98759999961598612679999999999799789985


No 352
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.05  E-value=0.065  Score=34.82  Aligned_cols=85  Identities=18%  Similarity=0.192  Sum_probs=45.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-CHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221-00477999985103474-22233210368999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-PAAQEQLRYLGEQIQVD-TLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-~aA~eQL~~~a~~~~v~-~~~~~~~~dp~~i~~~a~~~  178 (461)
                      ..++|+|++|+|||..+--||.++-. ..++...+.+-.|- ..++      +.-++.| -|....+.   -...+++  
T Consensus         4 ~~~l~~GPsGvGKT~lAk~la~~l~~-~~~~~i~~dm~e~~~~~~v------~~l~g~~~gyvg~~~~---G~l~~~v--   71 (168)
T pfam07724         4 GSFLFLGPTGVGKTELAKALAELLFG-DERALIRIDMSEYMEEHSV------SRLIGAPPGYVGYEEG---GQLTEAV--   71 (168)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEECCCCCCCHHHH------HHHCCCCCCCCCCCCC---CCHHHHH--
T ss_conf             79998898998999999999999679-8534488557565425699------9870589987262426---5078999--


Q ss_pred             HHHCCCCEEEEECCCCCCCH
Q ss_conf             97415886998334422211
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHIN  198 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d  198 (461)
                       +++.+-||++|--..-|.+
T Consensus        72 -~~~p~~VillDEIeKa~~~   90 (168)
T pfam07724        72 -RRKPYSIVLIDEIEKAHPG   90 (168)
T ss_pred             -HHCCCCEEEEHHHHHHCHH
T ss_conf             -8389848986577665899


No 353
>PRK00454 engB GTPase EngB; Reviewed
Probab=96.04  E-value=0.13  Score=32.48  Aligned_cols=146  Identities=17%  Similarity=0.280  Sum_probs=72.7

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      ...| .|.++|-.-+||+|-+-.|.      +.+++++++ ++  ||--       .  .+.+|..              
T Consensus        22 ~~~p-~VaivGrpNvGKSTL~N~L~------g~k~~a~vs-~~--pgtT-------r--~i~~~~~--------------   68 (196)
T PRK00454         22 DDGP-EIAFAGRSNVGKSSLINALT------NRKNLARTS-KT--PGRT-------Q--LINFFEV--------------   68 (196)
T ss_pred             CCCC-EEEEECCCCCCHHHHHHHHH------CCCCEEEEE-CC--CCCE-------E--EEEEEEC--------------
T ss_conf             8896-89998489888999999986------897369974-78--8860-------7--9888761--------------


Q ss_pred             HHHHHCCCCEEEEECCCC-----CCCHHHHHHHH-HHH-HHHCCCCCCCCCCCHHCC---HH--HHHHHHHHHHHCCCCC
Q ss_conf             999741588699833442-----22112468999-999-851385110003101112---25--6888898876358440
Q gi|254780711|r  177 QSARDGGYDAVILDTAGR-----NHINDSLMQEI-SEI-KSLTNPHEILLVADALTG---QD--AVHLARNFDKIVDLTG  244 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR-----~~~d~~lm~El-~~i-~~~~~p~e~~lV~da~~G---q~--a~~~a~~F~~~~~i~g  244 (461)
                            +..+++|||+|-     .+...+.+.++ ... ....+-+-+++++||..|   ||  ..++++.+.  .+ -=
T Consensus        69 ------~~~~~lvDtpGyG~a~~~~~~~~~~~~~i~~yl~~~~~l~~villIDa~~g~~~~D~~i~~~l~~~~--~p-~i  139 (196)
T PRK00454         69 ------NDGLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLQKRENLKGVVLLIDSRHPLKELDLEMIEWLKEAG--IP-VL  139 (196)
T ss_pred             ------CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CC-CE
T ss_conf             ------8833899379974132778788899999999999623336389999716589888999999998627--78-59


Q ss_pred             EEEEECCCCCCCCH---HHHHHHHH-----CCCHHHEE--CCCCCCCCCC
Q ss_conf             77641157663303---67778884-----78730261--5867232100
Q gi|254780711|r  245 IILTRMDGDGRGGA---ALSMRTVT-----GKPIKAIG--TGEKINDLEN  284 (461)
Q Consensus       245 iIlTKlD~~akgG~---als~~~~~-----~~PI~fig--~GE~~~dle~  284 (461)
                      ++++|.|--.+..-   ...+....     ..||.+|+  +|+.+++|..
T Consensus       140 ivlNKiD~l~~~~~~~~~~~i~~~l~~~~~~~~ii~ISA~~g~GI~eL~~  189 (196)
T PRK00454        140 IVLTKADKLKKGERKKLLKKVKKALARFAADPEVLLFSSLKKTGIDELRA  189 (196)
T ss_pred             EEEECCHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHH
T ss_conf             99987251697899999999999976125898289996999979899999


No 354
>PRK07429 phosphoribulokinase; Provisional
Probab=96.04  E-value=0.013  Score=40.09  Aligned_cols=67  Identities=25%  Similarity=0.323  Sum_probs=49.6

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC----------------HH------HHHHHHH--H
Q ss_conf             5884189962344333468899999999861489507820542210----------------04------7799998--5
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP----------------AA------QEQLRYL--G  152 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~----------------aA------~eQL~~~--a  152 (461)
                      +.+|.+|-++|=.||||||.+-+|+..|-   ...|.+++.|.|--                .|      .+||+.+  +
T Consensus         5 ~~rP~IIGIAGgSGSGKTTv~r~I~~~fg---~~~VtvI~~DdYhk~dr~~r~~~~~t~lhP~And~dLl~e~L~~Lk~G   81 (331)
T PRK07429          5 PDRPVIIGVAGDSGCGKSTFLRRLADLFG---EELVTVICLDDYHSLDRKQRKEIGITALDPRANNFDLMYEQLKALKTG   81 (331)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHCC
T ss_conf             99998999857887789999999999838---887799947867778878898718987896400599999999999859


Q ss_pred             HCCCCCCCCCCCCC
Q ss_conf             10347422233210
Q gi|254780711|r  153 EQIQVDTLEVIPEQ  166 (461)
Q Consensus       153 ~~~~v~~~~~~~~~  166 (461)
                      +.+..|+|....+.
T Consensus        82 k~I~~PvYdh~tg~   95 (331)
T PRK07429         82 QPILKPIYNHETGK   95 (331)
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             97256523564787


No 355
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.03  E-value=0.058  Score=35.19  Aligned_cols=122  Identities=16%  Similarity=0.184  Sum_probs=62.3

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC--CCCCC--CCCCCCHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103--47422--233210368999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI--QVDTL--EVIPEQSPEKIAIRA  175 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~--~v~~~--~~~~~~dp~~i~~~a  175 (461)
                      ..-|.+=|+-||||||-+..|+.+|+. .|.+|.+..--+. .-.-+.++.+...-  .+.-+  ..-...|-..-+.+-
T Consensus         3 g~fI~iEGiDGaGKTT~~~~L~~~l~~-~g~~v~~trEP~~-~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~   80 (208)
T COG0125           3 GMFIVIEGIDGAGKTTQAELLKERLEE-RGIKVVLTREPGG-TPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV   80 (208)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             629999788889889999999999998-2980799868999-86999999997388667888999999999999999999


Q ss_pred             HHHHHHCCCCEEEEEC---------CCCCCCHHHHHHHHHHHHH-HCCCCCCCC-CCCHH
Q ss_conf             9999741588699833---------4422211246899999985-138511000-31011
Q gi|254780711|r  176 TQSARDGGYDAVILDT---------AGRNHINDSLMQEISEIKS-LTNPHEILL-VADAL  224 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDT---------aGR~~~d~~lm~El~~i~~-~~~p~e~~l-V~da~  224 (461)
                      +..+-.+ -++||.|-         .+....+.+.+.++..+.. -..||-+++ =+|.-
T Consensus        81 i~pal~~-g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e  139 (208)
T COG0125          81 IKPALKE-GKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPE  139 (208)
T ss_pred             HHHHHCC-CCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf             7887628-9999987831378885353059998999999976547899988999948889


No 356
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH.    FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=96.03  E-value=0.01  Score=40.95  Aligned_cols=198  Identities=22%  Similarity=0.304  Sum_probs=124.6

Q ss_pred             HHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             98718774210002588418996234433346889999999986148950782054221004779999851034742223
Q gi|254780711|r   83 VEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV  162 (461)
Q Consensus        83 ~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~  162 (461)
                      ++.|-...+--.+.-+-|.=+|||||.|+|||        -|.|      ++                 |-..+||||+.
T Consensus        75 VdFLK~P~kf~~LGaKIPKGVLLvGPPGTGKT--------LLAK------Av-----------------AGEA~VPFF~i  123 (505)
T TIGR01241        75 VDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKT--------LLAK------AV-----------------AGEAGVPFFSI  123 (505)
T ss_pred             HHHCCCCHHHHHCCCCCCCCEEEECCCCCCHH--------HHHH------HH-----------------HCCCCCCCEEE
T ss_conf             42226963798727889871473178784246--------7887------52-----------------02588962474


Q ss_pred             CCCCHHHH--------HHHHHHHHHHHCCCCEEEEE---CCCCCC--------CHH---HHHHHHHHHHHHCCCCCCCCC
Q ss_conf             32103689--------99999999974158869983---344222--------112---468999999851385110003
Q gi|254780711|r  163 IPEQSPEK--------IAIRATQSARDGGYDAVILD---TAGRNH--------IND---SLMQEISEIKSLTNPHEILLV  220 (461)
Q Consensus       163 ~~~~dp~~--------i~~~a~~~a~~~~~D~iiiD---TaGR~~--------~d~---~lm~El~~i~~~~~p~e~~lV  220 (461)
                       +|||=++        =++|=.+.||++-=-+|+||   --||+-        +|+   .|=|=|-++.-.- ..+=+.|
T Consensus       124 -SGSdFVEMFVGVGASRVRDLFeqAK~nAPCIIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~-~~~gvIv  201 (505)
T TIGR01241       124 -SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFG-TNTGVIV  201 (505)
T ss_pred             -CCCCEEECCCCCCCEEHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCC-CCCCEEE
T ss_conf             -07610111205640001445799997189705640100003335643667654135543323313317858-9885799


Q ss_pred             CCHHCCHHHHHHH----HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             1011122568888----988763584407764115766330367778884787302615867232100136889987735
Q gi|254780711|r  221 ADALTGQDAVHLA----RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILG  296 (461)
Q Consensus       221 ~da~~Gq~a~~~a----~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLG  296 (461)
                      |=||.=-|.++-|    =.|.-+     |.+.+=|  -+|=-++=-+|.-++|..           +..|-+.+|.+==|
T Consensus       202 ~AATNRPDvLD~ALLRPGRFDRQ-----v~V~~PD--~~GR~~IL~VH~~~~kLa-----------~~vdL~~~Ar~TPG  263 (505)
T TIGR01241       202 IAATNRPDVLDPALLRPGRFDRQ-----VVVDLPD--IKGREEILKVHAKNKKLA-----------PDVDLKAVARRTPG  263 (505)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCE-----EECCCCC--HHHHHHHHHHHHCCCCCC-----------CCCCHHHHHHHCCC
T ss_conf             85048841165100687874451-----3458887--467899999985488997-----------02477999701568


Q ss_pred             C--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             8--6278899987421126789988865310463799999999998
Q gi|254780711|r  297 M--GDVVSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQT  340 (461)
Q Consensus       297 m--gD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i  340 (461)
                      +  -|+.=|+.         ||..++-|--+-.-+++||-+-+..+
T Consensus       264 fSGADLaNl~N---------EAALlAAR~n~~~i~~~~~eeA~Drv  300 (505)
T TIGR01241       264 FSGADLANLLN---------EAALLAARKNKTEITMNDIEEAVDRV  300 (505)
T ss_pred             CCHHHHHHHHH---------HHHHHHHHCCCCEECHHHHHHHHHHH
T ss_conf             76788999999---------99999861798656288898787765


No 357
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.02  E-value=0.005  Score=43.30  Aligned_cols=41  Identities=22%  Similarity=0.249  Sum_probs=32.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH
Q ss_conf             8996234433346889999999986148950782054221004779
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ  147 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ  147 (461)
                      .|+|+|+.||||+|-+..||.+|    +. +-+.+.|.+|.+....
T Consensus         2 ~iillGpPGsGKgT~a~~l~~~~----~~-~hiStGdllR~~i~~~   42 (225)
T PTZ00088          2 KIVLFGAPGVGKGTFAEILSKKE----KL-KHINMGNILRDEIKKE   42 (225)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----CC-EEECHHHHHHHHHHCC
T ss_conf             79998999998799999999987----99-0687899999999739


No 358
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.02  E-value=0.013  Score=40.23  Aligned_cols=88  Identities=23%  Similarity=0.349  Sum_probs=54.3

Q ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             89962344-33346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r  102 VIMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       102 vIllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
                      ||.|+|.. |+||||.++-||..+.++.+++|+++-.|...--                                     
T Consensus         1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd-------------------------------------   43 (106)
T cd03111           1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------   43 (106)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------------------------------------
T ss_conf             9899728998668999999999999841993899965467799-------------------------------------


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHHHHHHHHHH
Q ss_conf             415886998334422211246899999985138511000310111--2256888898876
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAVHLARNFDK  238 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~~~a~~F~~  238 (461)
                          |+|+||++...  +..-+.-|      -..|++++|..-..  =+++.+..+.|..
T Consensus        44 ----d~VVvD~~~~~--~~~~~~al------~~ad~i~lv~~~~lp~lrn~kr~l~~l~~   91 (106)
T cd03111          44 ----DYVVVDLGRSL--DEVSLAAL------DQADRVFLVTQQDLPSIRNAKRLLELLRV   91 (106)
T ss_pred             ----CEEEECCCCCC--CHHHHHHH------HHCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             ----78999186553--88999999------86797999806774899979999999998


No 359
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.02  E-value=0.079  Score=34.16  Aligned_cols=221  Identities=19%  Similarity=0.157  Sum_probs=87.9

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ  177 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~  177 (461)
                      .+-.++.++|+|||||||.+-=|+..+.-..+ ..+.+..|-...... .+..+.+++++= |..+..+=....+++-+.
T Consensus        32 ~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~~-~~G~i~~~g~~i~~~-~~~~lr~~vg~V-fQ~P~~q~~~~tV~e~ia  108 (283)
T PRK13640         32 PRGSWTALIGHNGSGKSTISKLINGLLLPDDN-PKSKITVDGITLTAK-TVWDIREKVGIV-FQNPDNQFVGATVGDDVA  108 (283)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-CEEEEEECCEECCCC-CHHHHHHCEEEE-EECCCCCCCCCCHHHHHH
T ss_conf             89999999999998799999999640378888-617999999999967-988996261899-868876188782999998


Q ss_pred             HHHHC-CC--------------CEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHHH------
Q ss_conf             99741-58--------------8699833442221124-6899999985138511000310-111225688889------
Q gi|254780711|r  178 SARDG-GY--------------DAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLAR------  234 (461)
Q Consensus       178 ~a~~~-~~--------------D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a~------  234 (461)
                      +...+ +.              .+=+-|-+.|.+.+=. =..+--.|..+.-..--+|++| .+.|.|...+.+      
T Consensus       109 fgl~n~~~~~~e~~~~v~~~l~~vgl~~~~~~~p~~LSGGqkQRvaiA~aLa~~P~iLllDEPTs~LD~~~~~~i~~~l~  188 (283)
T PRK13640        109 FGLENRGVPRPEMIKIVADVLSDVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPQIIILDESTSMLDPAGKEQILKLIR  188 (283)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             45753799999999999999987799777647922299999999999999971999999768745489899999999999


Q ss_pred             HHHHHCCCCCEEEEE-CCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCCCHHHHHHHH-HCCCCHHHHHHHHHH
Q ss_conf             887635844077641-15766330367778884787302615867232---1001368899877-358627889998742
Q gi|254780711|r  235 NFDKIVDLTGIILTR-MDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENFFPDRIANRI-LGMGDVVSLVEKAAR  309 (461)
Q Consensus       235 ~F~~~~~i~giIlTK-lD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F~p~~~~~ri-LGmgD~~~l~e~~~~  309 (461)
                      ..++.-++|=+++|- +| .|        .  .---|.++--|.-+.+   =|.|.-..+..+. |...-+..|..+.++
T Consensus       189 ~l~~e~g~TvI~itHd~~-~a--------~--~aDrv~vm~~G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~l~~~L~~  257 (283)
T PRK13640        189 KLMKDNNLTIISITHDID-EA--------A--GADQVLVLDDGKLLAQGSPVEIFPKVELLKRIGLDIPFVYKLKLKLKE  257 (283)
T ss_pred             HHHHCCCCEEEEEEECHH-HH--------H--HCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             999706989999978878-99--------7--099899999999999777899857999999779999969999999997


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             11267899888653104637999999999985
Q gi|254780711|r  310 NLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQ  341 (461)
Q Consensus       310 ~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~  341 (461)
                      .         --.+-..-.|.+.+.+++.+++
T Consensus       258 ~---------g~~~~~~~~t~eel~~~l~~~~  280 (283)
T PRK13640        258 K---------GISVPQEINTEEKLVQYLCQLN  280 (283)
T ss_pred             C---------CCCCCCCCCCHHHHHHHHHHHH
T ss_conf             4---------9999988789999999999875


No 360
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=96.01  E-value=0.14  Score=32.33  Aligned_cols=88  Identities=20%  Similarity=0.202  Sum_probs=41.7

Q ss_pred             EEEECCCCCCHHHHHHHHH-HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             9962344333468899999-99986148950782054221004779999851---0347422233210368999999999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIA-YHLKTLKKKKILMASLDVHRPAAQEQLRYLGE---QIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA-~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~---~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      +++++++|+|||.+..-.+ ..+....+....++-+. .|+=+.+|.+.+-+   ..++.+.....+.++..- +..+  
T Consensus        17 ~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~P-t~aL~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~--   92 (167)
T pfam00270        17 VLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAP-TRELAEQIYEELKKLGKYLGLKVALLYGGDSPKEQ-LRKL--   92 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH-HHHH--
T ss_conf             8998899975899999999999874778987999906-08888899988643210267640464178617889-8764--


Q ss_pred             HHHCCCCEEEEECCCCCCC
Q ss_conf             9741588699833442221
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHI  197 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~  197 (461)
                        .+..| |+|=|.+++..
T Consensus        93 --~~~~~-Ilv~Tp~~l~~  108 (167)
T pfam00270        93 --KKGPD-ILVGTPGRLLD  108 (167)
T ss_pred             --CCCCC-EEEECHHHHHH
T ss_conf             --05770-79947899999


No 361
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=96.01  E-value=0.036  Score=36.77  Aligned_cols=132  Identities=20%  Similarity=0.220  Sum_probs=72.9

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      +.-+|.+||-.-+||.|---+|.       +++.++|+ |+               -|+.-       |...      ..
T Consensus        37 ~lPiVaIvGRPNVGKStLFNrL~-------~~~~AIV~-d~---------------pGvTR-------Dr~~------~~   80 (474)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRIL-------GRREAVVE-DI---------------PGVTR-------DRVS------YD   80 (474)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH-------CCCEEEEC-CC---------------CCCCC-------CCEE------EE
T ss_conf             99989998999988899999986-------88638805-98---------------99880-------8636------89


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHH-CCCCCCCCCCCHHCCHH--HHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             97415886998334422211246899999-9851-38511000310111225--68888988763584407764115766
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISE-IKSL-TNPHEILLVADALTGQD--AVHLARNFDKIVDLTGIILTRMDGDG  254 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~-i~~~-~~p~e~~lV~da~~Gq~--a~~~a~~F~~~~~i~giIlTKlD~~a  254 (461)
                      +.-.+..+.+|||+|-......+.+.+.. +..+ -..|-++||+||..|-.  -..+|+...+.-.--=+++.|+|+..
T Consensus        81 ~~~~~~~f~lvDTgG~~~~~~~~~~~i~~q~~~ai~eaD~IlfVvD~~~glt~~D~eia~~LRk~~kpviLVvNK~D~~~  160 (474)
T PRK03003         81 AEWNGRRFVVQDTGGWEPDAKGLQALVAEQAEVAMRTADAVLFVVDATVGATATDEAVARLLRRSGKPVFLAANKVDSER  160 (474)
T ss_pred             EEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             99999289999799999974789999999999999869999999968989887899999998753997799867556621


Q ss_pred             CCCHHHHHHHHHC
Q ss_conf             3303677788847
Q gi|254780711|r  255 RGGAALSMRTVTG  267 (461)
Q Consensus       255 kgG~als~~~~~~  267 (461)
                      . -...+-.+..|
T Consensus       161 ~-~~~~~efy~LG  172 (474)
T PRK03003        161 G-EADAAALWSLG  172 (474)
T ss_pred             H-HHHHHHHHHHC
T ss_conf             0-23489999757


No 362
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=96.01  E-value=0.18  Score=31.44  Aligned_cols=200  Identities=16%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----CCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             9999987187742100025884189962344333468899999999861-----48950782054221004779999851
Q gi|254780711|r   79 HDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTL-----KKKKILMASLDVHRPAAQEQLRYLGE  153 (461)
Q Consensus        79 ~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~-----~~~kV~lv~~Dt~R~aA~eQL~~~a~  153 (461)
                      .+.|..+|...      ...++..+|+||..|.|||+-+-|.+..+-..     ....|+.+-+    |..-++-+-|+.
T Consensus        46 L~~Le~Ll~~P------~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~----P~~p~~~~lY~~  115 (302)
T pfam05621        46 LNRLEALYAWP------NKQRMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQM----PSEPSVIRFYVA  115 (302)
T ss_pred             HHHHHHHHHCC------CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC----CCCCCHHHHHHH
T ss_conf             99999998468------64688755887079887899999999967998786667021899976----999886899999


Q ss_pred             ---CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC-----CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf             ---03474222332103689999999999741588699833-----4422211246899999985138511000310111
Q gi|254780711|r  154 ---QIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDT-----AGRNHINDSLMQEISEIKSLTNPHEILLVADALT  225 (461)
Q Consensus       154 ---~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDT-----aGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~  225 (461)
                         .+++|+-   ......+....++..++.-+.-++|||-     +|....-...+.-|+.+.+..+   +-+|.-++ 
T Consensus       116 IL~~l~aP~~---~~~~~~~~~~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel~---IpiV~vGt-  188 (302)
T pfam05621       116 LLAAMGAPLR---PRPRLPEMEQLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELR---IPLVGVGT-  188 (302)
T ss_pred             HHHHHCCCCC---CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCC---CCEEEECC-
T ss_conf             9998378778---8877899999999999974987899854365604868899999999999863658---78699531-


Q ss_pred             CHHHHH---HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC-----
Q ss_conf             225688---889887635844077641157663303677788847873026158672321001368899877358-----
Q gi|254780711|r  226 GQDAVH---LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM-----  297 (461)
Q Consensus       226 Gq~a~~---~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm-----  297 (461)
                       .+|++   .-..+.+.  +.-+.+.+---+.-....|.. .+-..|.+      +-.+|   .-..++.+|+-+     
T Consensus       189 -~eA~~ai~tD~QlasR--F~~~~Lp~W~~d~ef~~LL~s-fe~~LPL~------~~S~L---~~~~~a~~I~~~SeG~i  255 (302)
T pfam05621       189 -RDAYLAIRSDDQLENR--FEPMLLPPWEANDDCCSLLAS-FAASLPLR------RPSPI---ATLDMARYLLTRSEGTI  255 (302)
T ss_pred             -HHHHHHHHCCHHHHHH--CCCCCCCCCCCCCHHHHHHHH-HHHHCCCC------CCCCC---CCHHHHHHHHHHCCCCH
T ss_conf             -9999997068888850--586116888898089999999-99868887------77688---88999999999859928


Q ss_pred             CCHHHHHHHHH
Q ss_conf             62788999874
Q gi|254780711|r  298 GDVVSLVEKAA  308 (461)
Q Consensus       298 gD~~~l~e~~~  308 (461)
                      |++..|+..+.
T Consensus       256 Gei~~Ll~~aA  266 (302)
T pfam05621       256 GELAHLLMAAA  266 (302)
T ss_pred             HHHHHHHHHHH
T ss_conf             79999999999


No 363
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.00  E-value=0.18  Score=31.39  Aligned_cols=70  Identities=27%  Similarity=0.237  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHH
Q ss_conf             899999999999998718774210002588418996234433346889999999986148-9507820542210047799
Q gi|254780711|r   70 PGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKILMASLDVHRPAAQEQL  148 (461)
Q Consensus        70 ~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~lv~~Dt~R~aA~eQL  148 (461)
                      +..+...+|...+.+++.....      +....=++=--||||||-|..++|.++....+ .+|.+|+ |  |--=-+|+
T Consensus       249 ~~~~q~~a~~~~i~~~~~~~~~------~~~~~G~IWHtqGSGKTltm~~~A~~l~~~~~~~~v~fvv-D--R~dLd~Q~  319 (962)
T COG0610         249 QRYAQYRAVQKAIKRILKASNP------GDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVV-D--RKDLDDQT  319 (962)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC------CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-C--HHHHHHHH
T ss_conf             7889999999999999971267------8777238984069837899999999998365999699996-7--28899999


No 364
>cd04166 CysN_ATPS CysN_ATPS subfamily.  CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes.  ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate.  CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family.  CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP.  CysN is an example of lateral gene transfer followed by acquisition of new function.  In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.00  E-value=0.015  Score=39.63  Aligned_cols=129  Identities=16%  Similarity=0.206  Sum_probs=61.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHH-----HHH
Q ss_conf             9962344333468899999999861489507820542210047799998510347422--233210368999-----999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL--EVIPEQSPEKIA-----IRA  175 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~--~~~~~~dp~~i~-----~~a  175 (461)
                      |+.+|---+||||.++.|.+..   +.  +        .....++++..+...+-+-+  +-.....+.+--     .-+
T Consensus         2 ~vv~GHVD~GKSTL~g~LL~~~---g~--i--------~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~   68 (208)
T cd04166           2 FLTCGSVDDGKSTLIGRLLYDS---KS--I--------FEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVA   68 (208)
T ss_pred             EEEEECCCCCHHHHHHHHHHHC---CC--C--------CHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEE
T ss_conf             6999748898889999999982---99--6--------789999999887541676300034346868788269794105


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH---HHHHHCCCCCEE--EEEC
Q ss_conf             99997415886998334422211246899999985138511000310111225688889---887635844077--6411
Q gi|254780711|r  176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR---NFDKIVDLTGII--LTRM  250 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~---~F~~~~~i~giI--lTKl  250 (461)
                      ..++..+++.+.||||+|--..    +.++  +..+...|-.+||+||.-|-..  |.+   ..-..+++..+|  +.|+
T Consensus        69 ~~~f~~~~~~~~iiDtPGH~df----i~nm--i~gas~aD~ailVVda~~G~~~--QT~eh~~~~~~lgi~~iIv~vNKm  140 (208)
T cd04166          69 YRYFSTPKRKFIIADTPGHEQY----TRNM--VTGASTADLAILLVDARKGVLE--QTRRHSYILSLLGIRHVVVAVNKM  140 (208)
T ss_pred             EEEEEECCCEEEEEECCCCHHH----HHHH--HHHHHHCCEEEEEEECCCCCCH--HHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             8999819926999878962889----9999--9998637747999975888727--899999999974998399999885


Q ss_pred             CC
Q ss_conf             57
Q gi|254780711|r  251 DG  252 (461)
Q Consensus       251 D~  252 (461)
                      |-
T Consensus       141 D~  142 (208)
T cd04166         141 DL  142 (208)
T ss_pred             CC
T ss_conf             76


No 365
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.98  E-value=0.013  Score=40.17  Aligned_cols=49  Identities=29%  Similarity=0.344  Sum_probs=42.1

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH
Q ss_conf             02588418996234433346889999999986148950782054221004
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA  144 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA  144 (461)
                      ....+|.||-|.||-||||||-+..|+..|.. .|+.+-+.-.|.-|-+=
T Consensus        18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~-~G~~~y~LDGDnvR~gL   66 (197)
T COG0529          18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFA-KGYHVYLLDGDNVRHGL   66 (197)
T ss_pred             HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCHHHHHCC
T ss_conf             72799859996468888787999999999997-59758985574676500


No 366
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.96  E-value=0.014  Score=39.81  Aligned_cols=227  Identities=15%  Similarity=0.155  Sum_probs=95.3

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             00025884189962344333468899999999861489507820542210047799998510347422233210368999
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA  172 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~  172 (461)
                      +...++  ..+.++|+|||||||.+-=++..++-..|. |.+-..+.........++.+.+++++-| ..+..+=....+
T Consensus        27 l~I~~G--e~vaiiG~nGsGKSTLl~~l~Gll~p~~G~-V~~~~~~i~~~~~~~~~~~~~~~vG~Vf-Q~p~~ql~~~tV  102 (288)
T PRK13643         27 LEVKKG--SYTALIGHTGSGKSTLLQHLNGLLQPTEGK-VTVGDIVVSSTSKQKEIKPVRKKVGVVF-QFPESQLFEETV  102 (288)
T ss_pred             EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHHHHHCEEEEE-ECCCCCCCHHHH
T ss_conf             798599--899999999947999999997488888856-9999998568773544798775179999-777320243369


Q ss_pred             HHHHHHHHH--------------CCCCEE-EEE-CCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHHHHHHH
Q ss_conf             999999974--------------158869-983-3442221--12468999999851385110003101-1122568888
Q gi|254780711|r  173 IRATQSARD--------------GGYDAV-ILD-TAGRNHI--NDSLMQEISEIKSLTNPHEILLVADA-LTGQDAVHLA  233 (461)
Q Consensus       173 ~~a~~~a~~--------------~~~D~i-iiD-TaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~a~~~a  233 (461)
                      .+-+.+...              +..+.+ +-| -..|.+.  ... ..+.-.|..+.--+--+|++|= +.|.|.....
T Consensus       103 ~e~vafg~~n~g~~~~e~~~~v~~~l~~vgl~d~~~~r~p~~LSGG-qkqRvaiA~aLa~~P~vLlLDEPTs~LDp~~~~  181 (288)
T PRK13643        103 LKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGG-QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI  181 (288)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf             9999989998699989999999999997599366752797639999-999999999997499999995885558999999


Q ss_pred             ------HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCCC-HHHHHHHHHCCCCHHHH
Q ss_conf             ------9887635844077641157663303677788847873026158672321---0013-68899877358627889
Q gi|254780711|r  234 ------RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENFF-PDRIANRILGMGDVVSL  303 (461)
Q Consensus       234 ------~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F~-p~~~~~riLGmgD~~~l  303 (461)
                            +..++ -+.|=+++|- |        +..+...---|..+--|+-+.|=   |.|. |+.+...=|+...+..|
T Consensus       182 ~i~~ll~~l~~-~G~TiI~vtH-d--------~~~v~~~adrvivl~~G~Iv~~Gtp~evf~~~~~l~~~~l~~P~~~~l  251 (288)
T PRK13643        182 EMMQLFESIHQ-SGQTVVLVTH-L--------MDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHF  251 (288)
T ss_pred             HHHHHHHHHHH-CCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHH
T ss_conf             99999999995-3999999860-8--------999999799999998999999878899866999999769999849999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf             998742112678998886531046379999999999851
Q gi|254780711|r  304 VEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQK  342 (461)
Q Consensus       304 ~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~k  342 (461)
                      .++.+..=      .  -....-.-|.+++.+.+.++..
T Consensus       252 ~~~L~~~g------~--~~~~~~p~t~~e~~~~l~~l~~  282 (288)
T PRK13643        252 ADQLQKTG------A--VTFEKLPITRAELVTLLTSLSV  282 (288)
T ss_pred             HHHHHHCC------C--CCCCCCCCCHHHHHHHHHHHCC
T ss_conf             99999769------9--8867798989999999996142


No 367
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.96  E-value=0.055  Score=35.34  Aligned_cols=198  Identities=23%  Similarity=0.304  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf             6999999999999983031112699899999999999998718774--21000258841899623443334688999999
Q gi|254780711|r   45 LEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKES--IELDLNAPSPLVIMLVGLQGSGKTTTTAKIAY  122 (461)
Q Consensus        45 ~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~--~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~  122 (461)
                      ++.-+++.+.+-+-..|++     ..+..+--.||+...++.....  .+...   .++-|||+||+|||||--+--||.
T Consensus        60 lp~P~eI~~~LD~yVIGQ~-----~AKk~lsVAvyNHykRi~~~~~~~~~vei---~KsNILliGPTG~GKTlla~tLAk  131 (411)
T PRK05342         60 LPTPKEIKAHLDQYVIGQE-----RAKKVLSVAVYNHYKRLRQNGSKSDDVEL---QKSNILLIGPTGSGKTLLAQTLAR  131 (411)
T ss_pred             CCCHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCEEEECCCCCCHHHHHHHHHH
T ss_conf             9997999998621402848-----88899999999999998602133566521---345389989999778899999999


Q ss_pred             HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCH
Q ss_conf             99861489507820542210047799998510347422233210368999999999974----15886998334422211
Q gi|254780711|r  123 HLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD----GGYDAVILDTAGRNHIN  198 (461)
Q Consensus       123 ~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~----~~~D~iiiDTaGR~~~d  198 (461)
                      .+    +-+-.++-|-+|--|                  .+.|.|.-.+..+-++.|..    -..-+|.||        
T Consensus       132 ~l----~vPF~iaDAT~lTEa------------------GYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~ID--------  181 (411)
T PRK05342        132 IL----NVPFAIADATTLTEA------------------GYVGEDVENILLKLLQAADYDVEKAQRGIVYID--------  181 (411)
T ss_pred             HH----CCCEEEEEECEECCC------------------CCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEE--------
T ss_conf             86----999899861200126------------------745607999999999982888998836828885--------


Q ss_pred             HHHHHHHHHHHHHC-CCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH---HHHHHCCCHHHEE
Q ss_conf             24689999998513-8511000310111225688889887635844077641157663303677---7888478730261
Q gi|254780711|r  199 DSLMQEISEIKSLT-NPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALS---MRTVTGKPIKAIG  274 (461)
Q Consensus       199 ~~lm~El~~i~~~~-~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als---~~~~~~~PI~fig  274 (461)
                           |+.+|.+.. +|.-+   =|-  .-+.+.||  .-+-+  -|-+++   -..+||---.   ....--.-|.||+
T Consensus       182 -----EIDKIarks~~~s~t---rDV--SgEGVQqa--LLkii--EGt~v~---vp~~ggrkhp~~~~~~idT~nILFI~  244 (411)
T PRK05342        182 -----EIDKIARKSENPSIT---RDV--SGEGVQQA--LLKIL--EGTVAS---VPPQGGRKHPQQEFIQVDTTNILFIC  244 (411)
T ss_pred             -----EHHHHHHCCCCCCCC---CCC--CCHHHHHH--HHHHH--CCCEEC---CCCCCCCCCCCCCEEEEECCCEEEEE
T ss_conf             -----023454247888887---776--51248999--99987--587141---18887777877651676147179991


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             586723210013688998773586
Q gi|254780711|r  275 TGEKINDLENFFPDRIANRILGMG  298 (461)
Q Consensus       275 ~GE~~~dle~F~p~~~~~riLGmg  298 (461)
                      -|- .+.|+.--..|+-.+-+|+|
T Consensus       245 gGA-F~GL~~II~~R~~~~~iGF~  267 (411)
T PRK05342        245 GGA-FDGLEKIIKQRLGKSGIGFG  267 (411)
T ss_pred             CCC-CCCHHHHHHHHCCCCCCCCC
T ss_conf             155-33589999863578876778


No 368
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.95  E-value=0.1  Score=33.28  Aligned_cols=60  Identities=18%  Similarity=0.349  Sum_probs=31.8

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             88418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT  159 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~  159 (461)
                      .+-.++.++|+|||||||.+--+...... .......-.....+...++|++.+.+ .++.+
T Consensus        19 ~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~l~~   78 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGLYASGK-ARLISFLPKFSRNKLIFIDQLQFLID-VGLGY   78 (176)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHC-CHHHCCHHHCCCCCEEEHHHHHHHHH-CCCCC
T ss_conf             89989999999999899999988876103-11203210137553688577999997-48866


No 369
>cd01890 LepA LepA subfamily.  LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome.  LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea.  This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont.  Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=95.95  E-value=0.047  Score=35.87  Aligned_cols=122  Identities=19%  Similarity=0.214  Sum_probs=58.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEE--CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489-50782--0542210047799998510347422233210368999999999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKK-KILMA--SLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~-kV~lv--~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      -|.++|--++||||.+..|-+..   +.- .....  ..|+.   ..||=+      |+.+..     .++...   ...
T Consensus         2 NiaiiGHvd~GKTTL~~~ll~~t---g~i~~~~~~~~~~D~~---~~E~eR------giTi~~-----~~~~~~---~~~   61 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELT---GTVSKREMKEQVLDSM---DLERER------GITIKA-----QTVRLN---YKA   61 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCEECCCC---HHHHHC------CCEEEE-----EEEEEE---EEC
T ss_conf             59999489989899999999985---9954145732441651---767863------866874-----336888---413


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             97415886998334422211246899999985138511000310111225-----688889887635844077641157
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFDKIVDLTGIILTRMDG  252 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~~~~~i~giIlTKlD~  252 (461)
                      ...+.|-+-+|||+|.    .+...|+..=..+  -|-.+||+||.-|-.     ....|+.++  +++ =++++|+|-
T Consensus        62 ~~~~~~~in~iDtPGh----~dF~~~~~~al~~--~D~allVVda~~Gv~~qT~~~~~~a~~~~--~p~-ivviNKiD~  131 (179)
T cd01890          62 KDGQEYLLNLIDTPGH----VDFSYEVSRSLAA--CEGALLLVDATQGVEAQTLANFYLALENN--LEI-IPVINKIDL  131 (179)
T ss_pred             CCCCCEEEEEEECCCC----CCCHHHHHHHHHH--HCEEEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEECCCC
T ss_conf             6787148999989986----4517789889975--44278998647787374899999998769--988-999865556


No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function.  Barmotin belongs to the SMC protein family.  SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains.  Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins.  The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases.  The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.95  E-value=0.11  Score=33.00  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             2100025884189962344333468899999999
Q gi|254780711|r   91 IELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHL  124 (461)
Q Consensus        91 ~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~  124 (461)
                      ..+.+.++   ++.+||++||||||.+-=|+.++
T Consensus        16 vsl~ip~G---itaIvGpsGsGKSTLl~~i~~~l   46 (197)
T cd03278          16 TTIPFPPG---LTAIVGPNGSGKSNIIDAIRWVL   46 (197)
T ss_pred             EEEECCCC---EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             69973898---28999999998899999999874


No 371
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.95  E-value=0.043  Score=36.16  Aligned_cols=90  Identities=17%  Similarity=0.165  Sum_probs=48.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH------HHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             8996234433346889999999986148950782054221004779------9998510347422233210368999999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ------LRYLGEQIQVDTLEVIPEQSPEKIAIRA  175 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ------L~~~a~~~~v~~~~~~~~~dp~~i~~~a  175 (461)
                      .|+++|+.||||+|-+.+||..|    +. +-+-+.|.+|.....+      .+.+-++ |-.    .+..-...++++.
T Consensus         2 ~iillG~PGsGKgTqa~~la~~~----~~-~~is~GdllR~~i~~~s~~g~~i~~~~~~-G~l----Vpd~i~~~lv~~~   71 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKY----GI-PHISTGDMLRAAIKAGTELGKEAKSYMDA-GEL----VPDEIVIGLVKER   71 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----CC-EEECHHHHHHHHHHCCCHHHHHHHHHHHC-CCC----CCHHHHHHHHHHH
T ss_conf             79998999998799999999986----99-17868899999987399889999999977-987----7889999999999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             9999741588699833442221124689
Q gi|254780711|r  176 TQSARDGGYDAVILDTAGRNHINDSLMQ  203 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~  203 (461)
                      +.....  ..-.|+|=--|.......++
T Consensus        72 l~~~~~--~~G~IlDGfPRt~~Qa~~l~   97 (215)
T PRK00279         72 LAQPDC--ANGFLLDGFPRTIPQAEALD   97 (215)
T ss_pred             HHCCCC--CCEEEEECCCCCHHHHHHHH
T ss_conf             836565--57079868999879999999


No 372
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family; InterPro: IPR005700    The bacterial exopolysaccharide transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed at least seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport.
Probab=95.94  E-value=0.15  Score=32.01  Aligned_cols=147  Identities=21%  Similarity=0.380  Sum_probs=87.4

Q ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH---------------HHHHHCC------
Q ss_conf             884189962-344333468899999999861489507820542210047799---------------9985103------
Q gi|254780711|r   98 PSPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL---------------RYLGEQI------  155 (461)
Q Consensus        98 ~~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL---------------~~~a~~~------  155 (461)
                      ..| ||.+. -..+.||.--.+-+|+-+.. +|+++++|.+|.-.+++..-+               +.|-.-+      
T Consensus       560 ~~P-vv~~~~p~p~~Gks~i~an~aaliA~-ggkR~llidad~rk~~l~q~~~~~~~~GL~d~LaG~rs~~~~~~~~~~~  637 (778)
T TIGR01005       560 SEP-VVALASPLPDVGKSIIEANLAALIAA-GGKRVLLIDADIRKAALSQILVKAEKSGLLDLLAGERSLELDVKAEVAA  637 (778)
T ss_pred             CCC-EEEECCCCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             987-58856888866568899999999832-6871787326776055564421478885375564246566303402367


Q ss_pred             CCCCCCCC----CCCHHHHHH-----HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCH--
Q ss_conf             47422233----210368999-----9999999741588699833442221124689999998513851100-03101--
Q gi|254780711|r  156 QVDTLEVI----PEQSPEKIA-----IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEIL-LVADA--  223 (461)
Q Consensus       156 ~v~~~~~~----~~~dp~~i~-----~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~-lV~da--  223 (461)
                      +.+++...    .-..+.++.     .+-++.|.. .||+++|||+--.++-.     .+.+..  -|+-++ ||..=  
T Consensus       638 ~l~~l~~GGas~~~h~~~eLLaspa~~~l~~~ar~-~~D~vvvd~~~~~pV~d-----~~a~a~--la~~~lslvt~~~r  709 (778)
T TIGR01005       638 KLDILDAGGASLLRHNSSELLASPAMVELVENARS-AYDLVVVDVAAVAPVAD-----AKALAA--LADLVLSLVTEYDR  709 (778)
T ss_pred             CCHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHH-HCCEEEECCCHHHHHHH-----HHHHHH--CCCEEEHHEEEECC
T ss_conf             71123347612478884153216688999998865-18857745531248999-----999742--24200200111144


Q ss_pred             H---CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             1---12256888898876358440776411576633
Q gi|254780711|r  224 L---TGQDAVHLARNFDKIVDLTGIILTRMDGDGRG  256 (461)
Q Consensus       224 ~---~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akg  256 (461)
                      +   .+.+.+.+....+  ..+.||||.++|-+..+
T Consensus       710 ~~~~~~r~~~~~~~~~n--~~v~gV~ln~ldpn~~~  743 (778)
T TIGR01005       710 SVVELVRELLKSLSRLN--SEVLGVVLNKLDPNELV  743 (778)
T ss_pred             EEHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCHH
T ss_conf             10444288775445318--60456650455752011


No 373
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435   The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , .    In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) .   The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=95.94  E-value=0.0088  Score=41.44  Aligned_cols=117  Identities=22%  Similarity=0.386  Sum_probs=69.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      |+-++|.-+|||||-+.+|+..|+. +|.+|++|==+-+  |        +....++    ..|+|-..       + .+
T Consensus         1 v~~i~G~k~SGKTtL~~~l~~~L~~-~Gy~V~~IKH~gh--G--------~H~~~~d----~~GkDs~r-------h-r~   57 (165)
T TIGR00176         1 VLQIVGYKNSGKTTLIERLVKALKA-RGYRVATIKHDGH--G--------HHDFDID----KEGKDSYR-------H-RE   57 (165)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHC-CCCCEEEEEECCC--C--------CCCCEEC----CCCCCCHH-------H-HH
T ss_conf             9378962588678999999999970-7995089860898--8--------8756527----99873133-------2-10


Q ss_pred             CCCCEEEEECCCCCCCHHHHH----HHHHHHHHHCCC--CCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             158869983344222112468----999999851385--11000310111225688889887635844077641157663
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLM----QEISEIKSLTNP--HEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGR  255 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm----~El~~i~~~~~p--~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~ak  255 (461)
                      -+.|.++|=+.-|...=..+-    ..|..+.....|  ...+|             ++-|++ .++.-+++-+-+....
T Consensus        58 AGA~~v~~~~~~~~~~~~~~~g~~e~~L~~~l~~~~~~~~D~~L-------------vEGfK~-~~~pKi~~~r~~~~~~  123 (165)
T TIGR00176        58 AGADAVIVASSERYAVMTETQGEEELDLEALLKRLADRELDIIL-------------VEGFKD-SPLPKIVVIRNEAEEK  123 (165)
T ss_pred             CCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCEEE-------------EECCCC-CCCCEEEEEECCCCCC
T ss_conf             43627886679068998752899987879998642855268789-------------852455-7887489972675566


No 374
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.94  E-value=0.089  Score=33.79  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=27.6

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             84189962344333468899999999861489507820542
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV  139 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt  139 (461)
                      +-.++.+||++||||||.+.=|+..+.. .|. |.+-..|.
T Consensus        29 ~Ge~vaIvG~sGsGKSTLl~lL~gl~~~-~G~-I~idg~~i   67 (275)
T cd03289          29 PGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGD-IQIDGVSW   67 (275)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC-CCE-EEECCEEC
T ss_conf             9999999999999799999999603578-953-99998806


No 375
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=95.94  E-value=0.014  Score=39.97  Aligned_cols=107  Identities=20%  Similarity=0.329  Sum_probs=54.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ  177 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~  177 (461)
                      +++..|+++|..||||||-+-++.    .  +.-.-      +-|       +    +|+.+...               
T Consensus        12 ~k~~Ki~llG~~~vGKTsll~~~~----~--~~~~~------~~p-------T----ig~~~~~v---------------   53 (174)
T pfam00025        12 NKEMRILILGLDNAGKTTILYKLK----L--GEIVT------TIP-------T----IGFNVETV---------------   53 (174)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHH----C--CCCCC------CCC-------C----CCCEEEEE---------------
T ss_conf             966699999999998899999995----4--99887------447-------4----68238999---------------


Q ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHHHHC------CCCC-EEEE
Q ss_conf             9974158869983344222112468999-99985138511000310111225688889-887635------8440-7764
Q gi|254780711|r  178 SARDGGYDAVILDTAGRNHINDSLMQEI-SEIKSLTNPHEILLVADALTGQDAVHLAR-NFDKIV------DLTG-IILT  248 (461)
Q Consensus       178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~~~~------~i~g-iIlT  248 (461)
                        ..+++.+.+.||||....     ..+ +...+  +.+-+++|.|++-- +.++.++ .+.+.+      ++.- ++.+
T Consensus        54 --~~~~~~~~iwDt~Gqe~~-----~~~~~~y~~--~a~~ii~V~D~t~~-~s~~~~~~~l~~~l~~~~~~~~piliv~N  123 (174)
T pfam00025        54 --TYKNVKFTVWDVGGQESL-----RPLWRNYFP--NTDAVIFVVDSADR-DRIEEAKEELHALLNEEELADAPLLILAN  123 (174)
T ss_pred             --EECCEEEEEEECCCCCCC-----CHHHHHHHC--CCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             --989999999827987023-----267998841--78268999867867-87999999999987542358970899872


Q ss_pred             ECCC
Q ss_conf             1157
Q gi|254780711|r  249 RMDG  252 (461)
Q Consensus       249 KlD~  252 (461)
                      |.|=
T Consensus       124 K~DL  127 (174)
T pfam00025       124 KQDL  127 (174)
T ss_pred             CCCC
T ss_conf             5667


No 376
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE).  They are clustered together phylogenetically.  MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all.  An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport.  The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.93  E-value=0.074  Score=34.40  Aligned_cols=63  Identities=17%  Similarity=0.237  Sum_probs=39.6

Q ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             0025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r   94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV  157 (461)
Q Consensus        94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v  157 (461)
                      .+.-..-.++.++|++||||||.+-=++..+.-..| ++.+-.-|.......+.-..+.+.++.
T Consensus        24 sl~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~rr~~Ig~   86 (218)
T cd03255          24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG-EVRVDGTDISKLSEKELAAFRRRHIGF   86 (218)
T ss_pred             EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHHHCCEEE
T ss_conf             899869989999999998699999999669999964-999999998879989999986504789


No 377
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.92  E-value=0.13  Score=32.60  Aligned_cols=224  Identities=14%  Similarity=0.149  Sum_probs=100.3

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHHHCCCCCCCCCC--------
Q ss_conf             00025884189962344333468899999999861489507820542-210047799998510347422233--------
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV-HRPAAQEQLRYLGEQIQVDTLEVI--------  163 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt-~R~aA~eQL~~~a~~~~v~~~~~~--------  163 (461)
                      +...++  .++.++|.|||||||.+-=++..+.-..|. |.+-..+. ...-....++.+.+.+++-| ..+        
T Consensus        32 l~i~~G--e~~aIiG~nGsGKSTL~~~l~Gll~p~~G~-v~~~~~~i~~~~~~~~~~~~~r~~vG~vf-Q~P~~qlf~~t  107 (289)
T PRK13645         32 LTFKKN--KVTCVIGTTGSGKSTMIQLTNGLIISETGQ-TIVGDYAIPANLKKIKEVKRLRKEIGLVF-QFPEYQLFQET  107 (289)
T ss_pred             EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCCCHHHHHHHHCCEEEEE-ECCCCCCCHHH
T ss_conf             898899--899999999957999999996598899985-99999983476531557899763679996-67764626637


Q ss_pred             -----------CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHH
Q ss_conf             -----------2103689999999999741588699833442221--1246899999985138511000310-1112256
Q gi|254780711|r  164 -----------PEQSPEKIAIRATQSARDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVAD-ALTGQDA  229 (461)
Q Consensus       164 -----------~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a  229 (461)
                                 .+.++.++..+.-+..+.-+.+   -|-+.|.+.  ... ..+--.|..++--+--+|++| .++|.|.
T Consensus       108 V~~~iafg~~n~g~~~~e~~~rv~~~l~~v~L~---~~~~~~~p~~LSGG-qkqRVaiA~aLa~~P~iLilDEPTagLDp  183 (289)
T PRK13645        108 IEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP---EDYVKRSPFELSGG-QKRRVALAGIIAMDGNTLVLDEPTGGLDP  183 (289)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC---HHHHCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf             999998679876999999999999999876998---66741890109999-99999999999639999999588764898


Q ss_pred             HH------HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCCC-HHHHHHHHHCCCC
Q ss_conf             88------889887635844077641157663303677788847873026158672321---0013-6889987735862
Q gi|254780711|r  230 VH------LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENFF-PDRIANRILGMGD  299 (461)
Q Consensus       230 ~~------~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F~-p~~~~~riLGmgD  299 (461)
                      ..      ..+..++..+.|=+++|- |        +..+...---|..+-.|+-+.+=   |.|. ++.+...=|....
T Consensus       184 ~~~~~i~~ll~~L~~~~g~Tvi~vtH-d--------m~~v~~~aDrviVm~~G~iv~~G~p~evf~~~~~l~~~~l~~P~  254 (289)
T PRK13645        184 KGEEDFINLFERLNKEYKKRIIMVTH-N--------MDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPK  254 (289)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCH
T ss_conf             99999999999999956999999915-9--------99999979999999899899987889986799999977999985


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf             78899987421-12678998886531046379999999999851
Q gi|254780711|r  300 VVSLVEKAARN-LNEKQAALTAKKIAKGKFDLEDLAEQFRQTQK  342 (461)
Q Consensus       300 ~~~l~e~~~~~-~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~k  342 (461)
                      +..|.++.++. ++         ..-..-+|.+++.+++..+-|
T Consensus       255 ~~~l~~~L~~~g~~---------~~~~~~~t~ee~~~~l~~~~~  289 (289)
T PRK13645        255 LYQLMYKLKNKGID---------LLNKNIRTIEEFAKELAKVLK  289 (289)
T ss_pred             HHHHHHHHHHCCCC---------CCCCCCCCHHHHHHHHHHHHC
T ss_conf             99999999976998---------889997999999999999759


No 378
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.92  E-value=0.045  Score=36.01  Aligned_cols=79  Identities=18%  Similarity=0.122  Sum_probs=45.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
                      ..+.+.|+.|+|||.-+-=+|+.+.. .++++..+++..+..-..+                            .++  .
T Consensus        39 ~~l~i~G~~GsGKTHLl~a~~~~~~~-~~~~~~yl~~~~~~~~~~~----------------------------~l~--~   87 (226)
T TIGR03420        39 RFLYLWGESGSGKSHLLQAACAAAEE-RGKSAIYLPLAELAQADPE----------------------------VLE--G   87 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEECHHHHHHHHHH----------------------------HHH--H
T ss_conf             86999899999889999999999862-6995799529998775399----------------------------997--2


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             415886998334422211246899999985
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKS  210 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~  210 (461)
                      .+.+|+++||-.-+...+...-+++=.+.+
T Consensus        88 l~~~d~l~iDDi~~i~~~~~~e~~lF~l~N  117 (226)
T TIGR03420        88 LEQADLVCLDDVEAIAGQPEWQEALFHLYN  117 (226)
T ss_pred             CCCCCEEEEECHHHHCCCHHHHHHHHHHHH
T ss_conf             744899999663334378378999999999


No 379
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761   The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages:    (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer.    Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC)  and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales .    This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=95.92  E-value=0.023  Score=38.24  Aligned_cols=70  Identities=27%  Similarity=0.248  Sum_probs=46.6

Q ss_pred             HHHHHHHHH-HHHHCCCCCCCCCCCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf             999999999-98718774210002588418996234433-34688999999998614895078205422100477
Q gi|254780711|r   74 VIKIVHDEL-VEVLGKESIELDLNAPSPLVIMLVGLQGS-GKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE  146 (461)
Q Consensus        74 i~kiv~~eL-~~lLg~~~~~l~~~~~~p~vIllvGl~Gs-GKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e  146 (461)
                      +..+.+.++ ...|+.....+--.|.+  -+-+||++|. |||||+-=++.+|.. -|+|++|++|=-||.+.-+
T Consensus        60 V~~i~~~d~~r~~~~~~A~~fY~~Ps~--~l~viGvTGTNGKTtt~~li~~~l~~-~G~~tgliGT~g~~~~g~~  131 (494)
T TIGR01085        60 VPVIIVPDLKRHALSSLAAAFYGHPSK--KLKVIGVTGTNGKTTTTSLIAQLLEL-LGKKTGLIGTIGYRLGGNE  131 (494)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHCCCCC--CEEEEEEEECCCCHHHHHHHHHHHHH-CCCEEEEEEEEEEECCCCC
T ss_conf             107996231358889999997348552--51689997128744899999999986-7970899865453047763


No 380
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.92  E-value=0.16  Score=31.87  Aligned_cols=136  Identities=10%  Similarity=0.050  Sum_probs=60.3

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      ..-|+-++|+|+.|+||++++--+|.++--.+.  ..--+|+.-+.-   +.-.-+..-++-++.....+-.++-+++-.
T Consensus        25 ~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~--~~~~~Cg~C~~C---~~~~~~~HPD~~~i~p~~~~i~idqiR~L~   99 (329)
T PRK08058         25 NRLAHAYLFEGAKGTGKKATALWLAKSLFCLER--NGVEPCGTCTNC---KRIESGNHPDVHLVAPDGQSIKKDQIRYLK   99 (329)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCCCCHHH---HHHHCCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf             996615655789998899999999999739999--999988788899---998769999767745661407799999999


Q ss_pred             HHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf             9997----415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r  177 QSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV  240 (461)
Q Consensus       177 ~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~  240 (461)
                      +.+.    ..+|-|+|||-|-++.....  .-|-+.-+.= |..++|++=+.--+.-..++..=.+.+
T Consensus       100 ~~~~~~p~~g~~KV~II~~Ae~m~~~Aa--NALLKtLEEP-p~~t~fIL~t~~~~~lLpTI~SRCq~i  164 (329)
T PRK08058        100 EEFSKSGVESNKKVYIIEHADKMTASAA--NSLLKFLEEP-SGDTTAILLTENKHQILPTILSRCQVV  164 (329)
T ss_pred             HHHCCCCCCCCCEEEEEECHHHHCHHHH--HHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHHCCEEE
T ss_conf             9964387578867999734776299999--9999986468-978679987299666436886314256


No 381
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.90  E-value=0.12  Score=32.72  Aligned_cols=43  Identities=21%  Similarity=0.304  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             999999998718774210002588418996234433346889999999986
Q gi|254780711|r   76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKT  126 (461)
Q Consensus        76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~  126 (461)
                      +-+++.|.+.+..        ..-|+-+||.|+.|+||++++-.+|.++.-
T Consensus        10 ~~~~~~L~~~i~~--------~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc   52 (319)
T PRK08769         10 QRAFDQTVAALDA--------GRLGHGLLICGPEGLGKRAVALALAEHVLA   52 (319)
T ss_pred             HHHHHHHHHHHHC--------CCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             8999999999976--------994206875899987899999999999837


No 382
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.88  E-value=0.14  Score=32.31  Aligned_cols=81  Identities=21%  Similarity=0.259  Sum_probs=54.5

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      .+.-++|.|..|+|||--++-+|+.+. +.|.+|.++++    |--+.+|+.--..          +.-...+     ..
T Consensus       104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~g~sv~f~~~----~el~~~Lk~~~~~----------~~~~~~l-----~~  163 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITA----PDLLSKLKAAFDE----------GRLEEKL-----LR  163 (254)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEH----HHHHHHHHHHHHC----------CCHHHHH-----HH
T ss_conf             588289989999879999999999999-83984999885----9999999998745----------5268999-----98


Q ss_pred             HHHCCCCEEEEECCCCCCCHHH
Q ss_conf             9741588699833442221124
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDS  200 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~  200 (461)
                       .-.++|++|||--|-.+.+.+
T Consensus       164 -~l~~~dlLIiDDlG~~~~~~~  184 (254)
T COG1484         164 -ELKKVDLLIIDDIGYEPFSQE  184 (254)
T ss_pred             -HHHHCCEEEEECCCCCCCCCH
T ss_conf             -875289899823677668815


No 383
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=95.87  E-value=0.017  Score=39.35  Aligned_cols=110  Identities=16%  Similarity=0.093  Sum_probs=64.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             34433346889999999986148950782054221004779-99985103474222332103689999999999741588
Q gi|254780711|r  107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ-LRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYD  185 (461)
Q Consensus       107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ-L~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D  185 (461)
                      |.-|+|||+.+-.+..+++. .++.|+ ++|=|-.||..=+ =.|+-.-.++|+-..  +.....+-+..-..-.-+..|
T Consensus         1 G~AGTGKS~ll~~i~~~l~~-~~~~v~-vtA~TGiAA~~i~gG~TiHs~~gi~~~~~--~~~~~~~~~~~~~~~~~~~~~   76 (418)
T pfam05970         1 GYGGTGKTFLWNALSARIRS-RGKIVL-NVASSGIAALLLPGGRTAHSRFGIPLDID--EDSTCKIKRGSKLAELLKKAS   76 (418)
T ss_pred             CCCCCCHHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHCCCCCEEHHHCCCCCCCCC--CCCCEEECCCHHHHHHHHHCC
T ss_conf             97988799999999999976-898899-98968999851699873985269898877--420112133778899874087


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCC---C------CCCCCCC
Q ss_conf             69983344222112468999999851385---1------1000310
Q gi|254780711|r  186 AVILDTAGRNHINDSLMQEISEIKSLTNP---H------EILLVAD  222 (461)
Q Consensus       186 ~iiiDTaGR~~~d~~lm~El~~i~~~~~p---~------e~~lV~d  222 (461)
                      ++|||=...+  +.++++-|..+.+.+..   +      .++|+-|
T Consensus        77 vLIIDEiSMv--~~~lfd~id~~lr~i~~~~~~~PFGGiqvIl~GD  120 (418)
T pfam05970        77 LIIWDEAPMT--HRHCFEALDRTLRDILKNTDDKPFGGKTVVLGGD  120 (418)
T ss_pred             EEEEECCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf             9998541135--7899999999999987127876779747998244


No 384
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=95.87  E-value=0.033  Score=37.10  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=25.4

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             588418996234433346889999999986
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKT  126 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~  126 (461)
                      ..-|+-+||+|+.|+||||++--+|..+-.
T Consensus        23 ~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~   52 (313)
T PRK05564         23 GKFSHASLIVGEDGIGKSILAKEIANKILG   52 (313)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             998750432799985099999999999828


No 385
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily.  E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions.  FeoB has been identified as part of this transport system.  FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=95.87  E-value=0.012  Score=40.55  Aligned_cols=141  Identities=21%  Similarity=0.272  Sum_probs=69.8

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             62344333468899999999861489507820542210047799998510347422233210368999999999974158
Q gi|254780711|r  105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGY  184 (461)
Q Consensus       105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~  184 (461)
                      ++|..-|||+|-+-.|..       .++. |+ |                  .|+-.    .|+..      ....-.+.
T Consensus         1 ivG~pNvGKSTL~N~L~g-------~~~~-vs-~------------------~pgtT----rd~~~------~~~~~~~~   43 (158)
T cd01879           1 LVGNPNVGKTTLFNALTG-------ARQK-VG-N------------------WPGVT----VEKKE------GRFKLGGK   43 (158)
T ss_pred             CCCCCCCCHHHHHHHHHC-------CCCE-EC-C------------------CCCCE----EEEEE------EEEEECCE
T ss_conf             979898889999999959-------9864-61-7------------------89827----63478------89962993


Q ss_pred             CEEEEECCCCCCCHHHHHHHH--HHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHH-
Q ss_conf             869983344222112468999--9998513851100031011122568888988763584-407764115766330367-
Q gi|254780711|r  185 DAVILDTAGRNHINDSLMQEI--SEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDL-TGIILTRMDGDGRGGAAL-  260 (461)
Q Consensus       185 D~iiiDTaGR~~~d~~lm~El--~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i-~giIlTKlD~~akgG~al-  260 (461)
                      .++++||+|-......-.+|.  +.....-..|-+++|+||.--..-...+....+ .+. .=++++|.|--.+-.-.. 
T Consensus        44 ~~~lvDtpGi~~~~~~~~~e~i~~~~~~~~~~d~vl~vvD~~~~~~~l~~~~~l~~-~~~p~ivV~NK~D~~~~~~~~~~  122 (158)
T cd01879          44 EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLE-LGLPVVVALNMIDEAEKRGIKID  122 (158)
T ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH-CCCCEEEEEEHHHHHHHCCCHHH
T ss_conf             79999798741256413567899999985178717999777406776899999986-59988999402776552254667


Q ss_pred             --HHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf             --77888478730261--586723210
Q gi|254780711|r  261 --SMRTVTGKPIKAIG--TGEKINDLE  283 (461)
Q Consensus       261 --s~~~~~~~PI~fig--~GE~~~dle  283 (461)
                        .+....+.||.+|+  +||.+++|.
T Consensus       123 ~~~l~~~~~~~ii~iSA~~g~Gi~~L~  149 (158)
T cd01879         123 LDKLSELLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             999998719948999877897999999


No 386
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.85  E-value=0.21  Score=30.92  Aligned_cols=218  Identities=17%  Similarity=0.181  Sum_probs=100.8

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-------CCCC-------
Q ss_conf             88418996234433346889999999986148950782054221004779999851034742-------2233-------
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-------LEVI-------  163 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-------~~~~-------  163 (461)
                      .+-.++.++|+|||||||++-=|+..++-..| +|.+-..++...  -.++..+.++++.-|       |...       
T Consensus        26 ~~Ge~vaiiG~nGsGKSTLl~~l~Gll~P~~G-~I~v~G~~i~~~--~~~~~~~r~~vg~vfQ~p~~ql~~~tV~e~i~f  102 (275)
T PRK13639         26 EEGEMIAILGPNGAGKSTLFLHFNGILKPSSG-SVLIKGEPIKYD--KKSLLNVRKTVGIVFQNPDDQLFAPTVEEDVAF  102 (275)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCC--CHHHHHHHHHCEEEECCCHHHHCCCCHHHHHHH
T ss_conf             89989999999996499999999739899963-999999999888--065999987415993383576562719999999


Q ss_pred             ----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHH-----
Q ss_conf             ----2103689999999999741588699833442221124-6899999985138511000310-1112256888-----
Q gi|254780711|r  164 ----PEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVAD-ALTGQDAVHL-----  232 (461)
Q Consensus       164 ----~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~-----  232 (461)
                          .+-...++..+ ++.+-+ .  +=|-|-+.|.+.+=. =+.+.-.|..++--+--+|++| .+.|.|...+     
T Consensus       103 g~~~~g~~~~e~~~r-v~~~l~-~--~gL~~~~~~~p~~LSGGqkqRVaiA~aLa~~P~iliLDEPTagLDp~~~~~i~~  178 (275)
T PRK13639        103 GPMNLGLSKEEVEKR-VKDALK-A--VGMEGFERKPPHHLSGGQKKRVAIAGILAMNPEIMVLDEPTSGLDPMGASQIMK  178 (275)
T ss_pred             HHHHCCCCHHHHHHH-HHHHHH-H--CCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf             999859999999999-999998-7--799456657944499999999999888736998999779755489999999999


Q ss_pred             -HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCCC-HHHHHHHHHCCCCHHHHHHHH
Q ss_conf             -8988763584407764115766330367778884787302615867232---10013-688998773586278899987
Q gi|254780711|r  233 -ARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENFF-PDRIANRILGMGDVVSLVEKA  307 (461)
Q Consensus       233 -a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F~-p~~~~~riLGmgD~~~l~e~~  307 (461)
                       .+..++. +.|=+++| -|        +..+...---|..+.-|+-+.+   =|.|. |+.+-..=|....+..|.++.
T Consensus       179 ll~~l~~~-G~Tii~iT-Hd--------m~~~~~~adrv~vl~~G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~l~~~L  248 (275)
T PRK13639        179 LLYDLNKE-GITIIIST-HD--------VDLVPIYANKIYVLNDGKIIKGGTPKEIFSDSETIRSANLRLPRVAHLIELL  248 (275)
T ss_pred             HHHHHHHC-CCEEEEEC-CC--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf             99999976-99999993-89--------9999996999999989989998788998749999997799999099999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             4211267899888653104637999999999985
Q gi|254780711|r  308 ARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQ  341 (461)
Q Consensus       308 ~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~  341 (461)
                      ++.-         .-..+.-+|++.+.+-++..-
T Consensus       249 ~~~~---------~~~~~~~~t~~e~~~~~~~~~  273 (275)
T PRK13639        249 NKED---------NLGIKMGYTIGEARRNIKEFI  273 (275)
T ss_pred             HHCC---------CCCCCCCCCHHHHHHHHHHHH
T ss_conf             7536---------998888746999999999985


No 387
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.85  E-value=0.011  Score=40.73  Aligned_cols=42  Identities=31%  Similarity=0.424  Sum_probs=34.8

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             884189962344333468899999999861489507820542210
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP  142 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~  142 (461)
                      .++.+|...|.-||||||-+-+|+..+..   .+|.+++-|.|=-
T Consensus         6 ~~~iiIgIaG~SgSGKTTv~~~l~~~~~~---~~~~~I~~D~YYk   47 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV---EKVVVISLDDYYK   47 (218)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHCC---CCCEEEECCCCCC
T ss_conf             76699998679877889999999998286---7524765223202


No 388
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein.  In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor.  This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export.  The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84  E-value=0.14  Score=32.34  Aligned_cols=41  Identities=27%  Similarity=0.412  Sum_probs=29.0

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             884189962344333468899999999861489507820542
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV  139 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt  139 (461)
                      .+-.++.+||++||||||.+-=|+..|.-..|. |.+-..|.
T Consensus        27 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~-I~idg~~i   67 (229)
T cd03254          27 KPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ-ILIDGIDI   67 (229)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEEC
T ss_conf             799999999999980999999996686678738-99999995


No 389
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1).  NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters.  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.83  E-value=0.16  Score=31.82  Aligned_cols=41  Identities=27%  Similarity=0.353  Sum_probs=30.3

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             841899623443334688999999998614895078205422
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      +-..+.+||++||||||.+-=|+.++.-..| +|.+-..|..
T Consensus        33 ~Ge~v~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~idg~di~   73 (207)
T cd03369          33 AGEKIGIVGRTGAGKSTLILALFRFLEAEEG-KIEIDGIDIS   73 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCCC-EEEECCEECC
T ss_conf             9999999999998799999999987288887-8999999954


No 390
>KOG0926 consensus
Probab=95.83  E-value=0.061  Score=35.02  Aligned_cols=108  Identities=20%  Similarity=0.254  Sum_probs=67.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH--HHHHCCC-CEEEECCCCCCCHHHHHHHHHHHCCCC-C--C-CCCCCCC----H-HH
Q ss_conf             8996234433346889999999--9861489-507820542210047799998510347-4--2-2233210----3-68
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYH--LKTLKKK-KILMASLDVHRPAAQEQLRYLGEQIQV-D--T-LEVIPEQ----S-PE  169 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~--~~~~~~~-kV~lv~~Dt~R~aA~eQL~~~a~~~~v-~--~-~~~~~~~----d-p~  169 (461)
                      |+.+||-+||||||-+-..-+-  |...... +-++.-+.-.|.||+.--+-.|..+++ +  | |.....+    | .+
T Consensus       273 vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti~e~T~I  352 (1172)
T KOG0926         273 VVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTIGEDTSI  352 (1172)
T ss_pred             EEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEE
T ss_conf             49995488888644341899871347766799870540572278999999999998525764114899853656887404


Q ss_pred             ------HHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHHHH
Q ss_conf             ------999999999974158869983344222-1124689999998
Q gi|254780711|r  170 ------KIAIRATQSARDGGYDAVILDTAGRNH-INDSLMQEISEIK  209 (461)
Q Consensus       170 ------~i~~~a~~~a~~~~~D~iiiDTaGR~~-~d~~lm~El~~i~  209 (461)
                            -+.++--..|....|.+||||-|---. +-+-|+.=|.+|.
T Consensus       353 kFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV  399 (1172)
T KOG0926         353 KFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIV  399 (1172)
T ss_pred             EEECCHHHHHHHHHHHHHHHCEEEEECHHHHCCCHHHHHHHHHHHHH
T ss_conf             77402388999887675542015785125430312789999998877


No 391
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=95.82  E-value=0.014  Score=39.84  Aligned_cols=158  Identities=19%  Similarity=0.234  Sum_probs=84.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----------CHHHHHHHHHH---H-----------CCC
Q ss_conf             8996234433346889999999986148950782054221-----------00477999985---1-----------034
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-----------PAAQEQLRYLG---E-----------QIQ  156 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-----------~aA~eQL~~~a---~-----------~~~  156 (461)
                      .|.+.|=-|.|||||++-|++-+.. .|+||++|.||--.           +--+|-|+.-.   +           .-|
T Consensus         2 ~iaiyGKGGIGKSTtsaNlsaaLA~-~GkkVl~IGcDpk~DsT~~L~g~~~~tvld~l~~~~~~~~~~~~edvi~~G~~g   80 (271)
T CHL00072          2 KIAVYGKGGIGKSTTSCNISIALAR-RGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGG   80 (271)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf             6999789854485889999999998-799799978997377774006998885999997537873216499998527788


Q ss_pred             CCCCCC---CCCC----HHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCC
Q ss_conf             742223---3210----368999999999974-158869983344222112468999999851385110003101--112
Q gi|254780711|r  157 VDTLEV---IPEQ----SPEKIAIRATQSARD-GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LTG  226 (461)
Q Consensus       157 v~~~~~---~~~~----dp~~i~~~a~~~a~~-~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~G  226 (461)
                      +.++..   .++.    --+..+.+-++.... +.||+|++|..|-.---.=-| -+    +  .-++++.|-.+  |.=
T Consensus        81 i~cvEaGGPepGvGCaGrgi~~~i~lL~~l~~~~d~D~V~yDvlgDVVCGGFa~-Pi----~--~Ad~~~iVts~e~mal  153 (271)
T CHL00072         81 VDCVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDVILFDVLGDVVCGGFAA-PL----N--YADYCIIITDNGFDAL  153 (271)
T ss_pred             CEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-CC----C--CCCEEEEEECCCHHHH
T ss_conf             466543899988777886519999999973762138889994477655654567-50----0--0888999956708899


Q ss_pred             HHHHHHHHHHHH---H--CCCCCEEEEECCCCCCCCHHHH-HHHHHCCCHH
Q ss_conf             256888898876---3--5844077641157663303677-7888478730
Q gi|254780711|r  227 QDAVHLARNFDK---I--VDLTGIILTRMDGDGRGGAALS-MRTVTGKPIK  271 (461)
Q Consensus       227 q~a~~~a~~F~~---~--~~i~giIlTKlD~~akgG~als-~~~~~~~PI~  271 (461)
                      .+|-|+++.-.+   .  +.+.|+|.-+.++    ...++ .+..++.|+.
T Consensus       154 yaANnI~~~i~~~a~~~~~rl~GiI~N~~~~----~~~v~~fa~~~g~~~i  200 (271)
T CHL00072        154 FAANRIAASVREKARTHPLRLAGLVGNRTSK----RDLIDKYVEACPMPVL  200 (271)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEECCCCC----HHHHHHHHHHCCCCEE
T ss_conf             9999999999997304686444365226883----7899999997399669


No 392
>PRK06762 hypothetical protein; Provisional
Probab=95.81  E-value=0.035  Score=36.88  Aligned_cols=93  Identities=24%  Similarity=0.302  Sum_probs=53.0

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      +..|.+=|--||||||++..|-.+|    |+.+++|+-|+.|-   +=|+       +.   ..++.-.+.+...-+.++
T Consensus         2 t~LIiiRGNSgSGKtT~Ak~L~~~~----G~g~lLvsQD~vRR---~mLr-------~k---D~~g~~~i~Li~~~~~yg   64 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL----GRGTLLVSQDVVRR---DMLR-------VK---DGPGNLSIDLIEQLVRYG   64 (166)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEHHHHHH---HHHH-------CC---CCCCCCCHHHHHHHHHHH
T ss_conf             5289997888888789999999986----88857853758999---9840-------55---779997868999999999


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             7415886998334422211246899999985
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISEIKS  210 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~  210 (461)
                      .+ ++++||+.--=....-.+++.+|.+...
T Consensus        65 ~~-~~~~VIlEGIL~a~~Yg~ml~~l~~~~~   94 (166)
T PRK06762         65 LQ-HCEFVILEGILNSDRYGPMLKELIHLFG   94 (166)
T ss_pred             HH-CCCEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf             85-6998999741004489999999998657


No 393
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.80  E-value=0.17  Score=31.62  Aligned_cols=128  Identities=19%  Similarity=0.200  Sum_probs=60.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH-------------CCCCCCCCCCCCCH
Q ss_conf             18996234433346889999999986148950782054221004779999851-------------03474222332103
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE-------------QIQVDTLEVIPEQS  167 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~-------------~~~v~~~~~~~~~d  167 (461)
                      ..+.+||+.||||||-+.=|+.+|.-..|. |.+-..|.... ..+.|+..-.             +-|+.+ +.+..+ 
T Consensus       362 e~vaiVG~SGsGKSTL~~LL~gly~p~~G~-I~idg~di~~i-~~~~lR~~i~~V~Q~~~LF~gTI~eNI~~-g~~~~s-  437 (585)
T PRK13657        362 QTVAIVGPTGAGKSTLINLLHRVFDPQSGR-IRIDGTDIRTV-TRASLRRNIGVVFQEAGLFNRSIEDNLRV-GRPDAT-  437 (585)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCCCC-EEECCEECHHC-CHHHHHHHCCEECCCCCCCCHHHHHHHHC-CCCCCC-
T ss_conf             889998898986999999986015788796-75898961016-89999852522166763547659988752-799998-


Q ss_pred             HHHHHHHHHHHHH--------HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHHHHH
Q ss_conf             6899999999997--------415886998334422211246899999985138511000310-11122568888988
Q gi|254780711|r  168 PEKIAIRATQSAR--------DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLARNF  236 (461)
Q Consensus       168 p~~i~~~a~~~a~--------~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a~~F  236 (461)
                      ..+ +.+|++.+.        .++||..+-+-.-++.--+   .+.-.|.++.=-+-.+|++| |+..=|+...++.+
T Consensus       438 d~e-i~~a~~~a~~~~~I~~lp~G~dT~vge~G~~LSGGQ---rQRialARAll~~p~IliLDEaTSaLD~~tE~~i~  511 (585)
T PRK13657        438 DEE-MRAAAERAQALDFIERKEDGYDTVVGERGRQLSGGE---RQRLAIARALLKDPPILILDEATSALDAETEAKVK  511 (585)
T ss_pred             HHH-HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHH---HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             688-999999843279997175666680137888689999---99999999994698989986887689999999999


No 394
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1.  Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box).  Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown.  Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT.  Nog1 is a nucleolar protein that might function in ribosome assembly.  The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to 
Probab=95.79  E-value=0.042  Score=36.26  Aligned_cols=91  Identities=18%  Similarity=0.150  Sum_probs=45.9

Q ss_pred             CCCEEEEECCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHH-HHH---H------CCC--
Q ss_conf             588699833442---221124689999998513851100031011122-----56888898-876---3------584--
Q gi|254780711|r  183 GYDAVILDTAGR---NHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARN-FDK---I------VDL--  242 (461)
Q Consensus       183 ~~D~iiiDTaGR---~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~-F~~---~------~~i--  242 (461)
                      +..++++||+|=   .+.+.+++++.-  ...-..|-+++|+|+.-.-     +.++..+. ..+   .      ...  
T Consensus        43 ~~~i~~~DtpGi~~~~~~~~~~~~~~l--~~~~~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~  120 (176)
T cd01881          43 GARIQVADIPGLIEGASEGRGLGNQFL--AHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA  120 (176)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHH--HHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf             966999957875457337878999999--874108899999989876554544589999999999997115665554326


Q ss_pred             --CCEEEEECCCCCCCCHHH----HHHHHHCCCHHHEEC
Q ss_conf             --407764115766330367----778884787302615
Q gi|254780711|r  243 --TGIILTRMDGDGRGGAAL----SMRTVTGKPIKAIGT  275 (461)
Q Consensus       243 --~giIlTKlD~~akgG~al----s~~~~~~~PI~fig~  275 (461)
                        .=++++|.|--.+....-    ......+.|+.+|+.
T Consensus       121 kp~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iSA  159 (176)
T cd01881         121 KPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             CCEEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             971999968603470031599999997468995899977


No 395
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake.  NatB possess six putative membrane spanning regions at its C-terminus.  In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane.  The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system.  Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.78  E-value=0.012  Score=40.32  Aligned_cols=47  Identities=21%  Similarity=0.289  Sum_probs=33.0

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             000258841899623443334688999999998614895078205422
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      +.+.-.+-.++-++|+|||||||++-=|+-.++-..| .|.+-..|.+
T Consensus        40 vsf~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G-~I~v~G~~~~   86 (236)
T cd03267          40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG-EVRVAGLVPW   86 (236)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECC
T ss_conf             0578848959999999983099999999649488715-9999999851


No 396
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2.  A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.77  E-value=0.075  Score=34.35  Aligned_cols=44  Identities=25%  Similarity=0.311  Sum_probs=28.8

Q ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             002588418996234433346889999999986148950782054
Q gi|254780711|r   94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD  138 (461)
Q Consensus        94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D  138 (461)
                      .+.-.+-..|.+||++||||||.+-=|..+|.-..|. |.+-..|
T Consensus        24 sl~i~~G~~v~ivG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~   67 (220)
T cd03245          24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS-VLLDGTD   67 (220)
T ss_pred             EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEE
T ss_conf             9998799999999999985999999996725478658-9999999


No 397
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.77  E-value=0.014  Score=39.99  Aligned_cols=229  Identities=17%  Similarity=0.240  Sum_probs=105.1

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             00025884189962344333468899999999861489507820542210047799998510347422233210368999
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA  172 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~  172 (461)
                      +...++  .++.++|+|||||||.+-=|+..++-..| +|.+-..|....-.-..++.+.+++++-| ..+..+=....+
T Consensus        28 l~I~~G--e~~~iiG~nGsGKSTLl~~l~Gll~P~sG-~V~i~G~~i~~~~~~~~~~~~r~~vg~vf-Q~p~~ql~~~tV  103 (286)
T PRK13641         28 FELEDG--SFVALIGHTGSGKSTLMQHFNALLKPSSG-KITIAGYHITPETSNKNLKDLRKKVGLVF-QFPEAQLFENTV  103 (286)
T ss_pred             EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCCHHHHHHHHHHEEEEE-ECCCCCCCCCHH
T ss_conf             798699--99999999983999999999659898854-99999899976665557999985154897-665101261129


Q ss_pred             HHHHHHHHHC-C-------------CC-EEEE-ECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHH---
Q ss_conf             9999999741-5-------------88-6998-33442221124-6899999985138511000310-111225688---
Q gi|254780711|r  173 IRATQSARDG-G-------------YD-AVIL-DTAGRNHINDS-LMQEISEIKSLTNPHEILLVAD-ALTGQDAVH---  231 (461)
Q Consensus       173 ~~a~~~a~~~-~-------------~D-~iii-DTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~---  231 (461)
                      .+-+.++..+ +             .+ +-+. |-+.|.+.+=. =+.+--.|..+.--+--+|++| .++|.|...   
T Consensus       104 ~eev~~g~~~~g~~~~e~~~~~~~~l~~vgl~~~~~~~~p~~LSGGqkqRvaiA~aLa~~P~iLlLDEPTsgLDp~~~~~  183 (286)
T PRK13641        104 LKDVEFGPKNFGFSEQEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKE  183 (286)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
T ss_conf             99999999986999899999999999976996455542913299999999999999974999999739734389999999


Q ss_pred             ---HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCC-CHHHHHHHHHCCCCHHHHH
Q ss_conf             ---889887635844077641157663303677788847873026158672321---001-3688998773586278899
Q gi|254780711|r  232 ---LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENF-FPDRIANRILGMGDVVSLV  304 (461)
Q Consensus       232 ---~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F-~p~~~~~riLGmgD~~~l~  304 (461)
                         ..+..++. +.|=+++|- |        +..+...---|..+-.|+-+.|=   |.| +|+.+...=|+-..+..|.
T Consensus       184 i~~ll~~l~~~-G~Tii~vtH-d--------~~~v~~~adrv~vm~~G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~~~  253 (286)
T PRK13641        184 MMQIFKDYQKA-GHTVILVTH-N--------MDDVAEYADDVLVLEHGKLIKHASPKEIFSDSEWLKKHYLDEPATSRFA  253 (286)
T ss_pred             HHHHHHHHHHC-CCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHH
T ss_conf             99999999963-999999915-9--------9999997999999989999997799999659999997799999399999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf             9874211267899888653104637999999999985114
Q gi|254780711|r  305 EKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIG  344 (461)
Q Consensus       305 e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~kmG  344 (461)
                      ...++.         --++....+|.+++.+.++.--|=|
T Consensus       254 ~~L~~~---------g~~~~~~~lt~~e~~~~l~~~l~~~  284 (286)
T PRK13641        254 SKLEKG---------GFKFSENPLTIDELVDGIKNNLKGG  284 (286)
T ss_pred             HHHHHC---------CCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             999975---------9999999879999999999996388


No 398
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.76  E-value=0.19  Score=31.24  Aligned_cols=41  Identities=12%  Similarity=0.248  Sum_probs=28.1

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             084113357899972326679899999999999999999986
Q gi|254780711|r  389 ANPSIIKHSRKKRIAAGSGTNAAKINKLLKLHRQVAEMMHST  430 (461)
Q Consensus       389 ~~P~ll~~SR~~RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~  430 (461)
                      .+|-|+++|=+.-|+-|.-.+.+||.+-++.-.-. ..+.++
T Consensus       422 Q~~~LF~gTI~eNi~~g~~~~~~~i~~a~~~a~l~-~~i~~l  462 (593)
T PRK10790        422 QDPVVLADTFLANVTLGRDISEEQVWQALETVQLA-ELARSL  462 (593)
T ss_pred             CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHC
T ss_conf             66514565299997760023679999999997789-999857


No 399
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.75  E-value=0.051  Score=35.64  Aligned_cols=50  Identities=14%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH
Q ss_conf             10002588418996234433346889999999986148950782054221004
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA  144 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA  144 (461)
                      .+...++  -++.++|++||||||.+-=++..+.-..| .|.+-..|..+...
T Consensus        29 s~~i~~G--E~v~iiG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~i~~~~~   78 (233)
T PRK11629         29 SFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDTPTSG-DVIFNGQPMSKLSS   78 (233)
T ss_pred             EEEECCC--CEEEEECCCCCCHHHHHHHHHCCCCCCCE-EEEECCEECCCCCH
T ss_conf             8998899--89999999994099999999669999863-99999999886998


No 400
>PRK12739 elongation factor G; Reviewed
Probab=95.75  E-value=0.23  Score=30.62  Aligned_cols=136  Identities=22%  Similarity=0.180  Sum_probs=75.0

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE-----CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             8418996234433346889999999986148950782-----05422100477999985103474222332103689999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMA-----SLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAI  173 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv-----~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~  173 (461)
                      +-.-|.++|--++||||.+=.|-++-..  -.+.+=+     .+|+ |  ..||-+      ++.+.+.     ++.   
T Consensus         9 ~IRNi~IvaHvd~GKTTL~d~LL~~~g~--i~~~g~v~~g~~~~D~-~--~~E~eR------gITi~ss-----~~s---   69 (693)
T PRK12739          9 KTRNIGIMAHIDAGKTTTTERILFYTGK--IHKIGEVHDGAATMDW-M--EQEQER------GITITSA-----ATT---   69 (693)
T ss_pred             HCEEEEEEECCCCCHHHHHHHHHHHCCC--CCCCCEECCCCCCCCC-C--HHHHHC------CCCEEEC-----EEE---
T ss_conf             8139999907998989999999997698--5657334389756878-0--999875------9867455-----277---


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---H--HHHHHHHHHHHHCCCCCEEEE
Q ss_conf             99999974158869983344222112468999999851385110003101112---2--568888988763584407764
Q gi|254780711|r  174 RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---Q--DAVHLARNFDKIVDLTGIILT  248 (461)
Q Consensus       174 ~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q--~a~~~a~~F~~~~~i~giIlT  248 (461)
                           +..++|-+=||||.|.  .|  -..|...-.+++  |-.++|+||.-|   |  ....|  ++.+.++. =++++
T Consensus        70 -----~~~~~~~iNLIDTPGH--vD--F~~EV~~alrv~--DgalvvVDaveGV~~qT~~v~rq--a~~~~lp~-il~iN  135 (693)
T PRK12739         70 -----AFWKDHRINIIDTPGH--VD--FTIEVERSLRVL--DGAVAVFDAVSGVEPQSETVWRQ--ADKYGVPR-IVFVN  135 (693)
T ss_pred             -----EEECCEEEEEEECCCC--CH--HHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHH--HHHCCCCE-EEEEE
T ss_conf             -----8459989999949697--40--589999999984--87999997898876779999999--99869896-99997


Q ss_pred             ECCCC-CCCCHHH-HHHHHHC
Q ss_conf             11576-6330367-7788847
Q gi|254780711|r  249 RMDGD-GRGGAAL-SMRTVTG  267 (461)
Q Consensus       249 KlD~~-akgG~al-s~~~~~~  267 (461)
                      |+|-. +.....+ ++....+
T Consensus       136 KiDR~~ad~~~~~~~i~~~l~  156 (693)
T PRK12739        136 KMDRIGADFFRVVEQIKDRLG  156 (693)
T ss_pred             CCCCCCCCHHHHHHHHHHHHC
T ss_conf             978899998999999999858


No 401
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules.  Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells.  Subsequently, virus-infected or malignantly transformed cells can be eliminated.  TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.74  E-value=0.16  Score=31.85  Aligned_cols=45  Identities=27%  Similarity=0.377  Sum_probs=30.0

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             000258841899623443334688999999998614895078205422
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      +...++  .++.+||.+||||||.+-=|+.+|.-..|. |.+-..|..
T Consensus        35 ~~i~~G--e~vaIvG~sGsGKSTL~~ll~gl~~p~~G~-I~idg~~i~   79 (226)
T cd03248          35 FTLHPG--EVTALVGPSGSGKSTVVALLENFYQPQGGQ-VLLDGKPIS   79 (226)
T ss_pred             EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEEHH
T ss_conf             998299--999999999984999999996454678878-999999934


No 402
>PRK06749 replicative DNA helicase; Provisional
Probab=95.74  E-value=0.23  Score=30.60  Aligned_cols=114  Identities=19%  Similarity=0.210  Sum_probs=72.2

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC------HHHHH
Q ss_conf             4189962344333468899999999861489507820542210047799--998510347422233210------36899
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ------SPEKI  171 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~------dp~~i  171 (461)
                      -..|.+.|=.|.|||+.+--+|....+ .|++|++.+..--    .+||  +.+|...+|+......+.      +-..+
T Consensus       186 g~LiviaaRPsmGKTa~alnia~~~a~-~g~~v~~fSlEMs----~~~l~~R~ls~~s~v~~~~i~~~~~~~~~~~~~~~  260 (428)
T PRK06749        186 GDFVVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMS----SKQLLKRMASCVGEVSGGRLKNPKHRFAMEDWEKV  260 (428)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHH
T ss_conf             868999627989768999999999996-4992799837899----99999999997549988886277677999999999


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             9999999974158869983344222112468999999851385110003101
Q gi|254780711|r  172 AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       172 ~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da  223 (461)
                       ..++...  .+..+.|.||++..-.  ++..+.+++.+.......+.|+|-
T Consensus       261 -~~a~~~l--~~~~l~i~d~~~~ti~--~i~~~~r~~~~~~g~~~~livIDY  307 (428)
T PRK06749        261 -SKAFAEI--GELPLEIYDNAGVTVQ--DIWMQTRKLKRKHGDKKVLIIVDY  307 (428)
T ss_pred             -HHHHHHH--HCCCEEEECCCCCCHH--HHHHHHHHHHHHCCCCCEEEEEEH
T ss_conf             -9999998--5596599758997679--999999999997499876999767


No 403
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=95.74  E-value=0.026  Score=37.91  Aligned_cols=167  Identities=19%  Similarity=0.279  Sum_probs=93.2

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC----CC--HHHHH---HHHHHHC------C----
Q ss_conf             0258841899623443334688999999998614895078205422----10--04779---9998510------3----
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH----RP--AAQEQ---LRYLGEQ------I----  155 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~----R~--aA~eQ---L~~~a~~------~----  155 (461)
                      +..++..+|.+-|=-|-||+||++.+++-+.. .|+||+++.||--    |.  +...|   |.++.++      +    
T Consensus        26 ~~~k~~~~IAiYGKGGIGKSTts~NlsAAlA~-~GkkVm~IGCDPKaDSTrlLlgG~~~~TVLd~~~~~~~~~e~v~~~d  104 (329)
T cd02033          26 PPTKKTQIIAIYGKGGIGKSFTLANLSYMMAQ-QGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGD  104 (329)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHH
T ss_conf             87544549999768843561688999999997-79969997888846033410589888409999987288644342501


Q ss_pred             ------CCCCCCCCCCCHH--------HHHHHHHHHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             ------4742223321036--------899999999997--415886998334422211246899999985138511000
Q gi|254780711|r  156 ------QVDTLEVIPEQSP--------EKIAIRATQSAR--DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILL  219 (461)
Q Consensus       156 ------~v~~~~~~~~~dp--------~~i~~~a~~~a~--~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~l  219 (461)
                            ||.+..+. +-.|        +-.+.+-++...  ..++|+|+.|.-|-----.     ...=.+.-..+|+++
T Consensus       105 v~~~g~Gv~CvEsG-GPEPGvGCAGRGIItai~lLe~lg~~~~d~D~V~yDVLGDVVCGG-----FAmPiR~g~A~evyI  178 (329)
T cd02033         105 VCFKRDGVFAMELG-GPEVGRGCGGRGIIHGFELLEKLGFHDWDFDYVLLDFLGDVVCGG-----FGLPIARDMAQKVIV  178 (329)
T ss_pred             EEECCCCEEEEECC-CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECC-----CCCCCCCCCCCEEEE
T ss_conf             78625998898667-999987678873013667877637752589999992245356646-----335335687628999


Q ss_pred             CCCH--HCCHHHHHHH---HHHHHH---CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHH
Q ss_conf             3101--1122568888---988763---58440776411576633036777888478730
Q gi|254780711|r  220 VADA--LTGQDAVHLA---RNFDKI---VDLTGIILTRMDGDGRGGAALSMRTVTGKPIK  271 (461)
Q Consensus       220 V~da--~~Gq~a~~~a---~~F~~~---~~i~giIlTKlD~~akgG~als~~~~~~~PI~  271 (461)
                      |.+.  |.=-.|-|++   +.|.+.   +.+.|+|..+-|++.-   +=..+...|.|+.
T Consensus       179 VtSgE~MalyAANNI~~~i~~~a~~gg~vrl~GlI~N~~~~~~e---~e~fa~~~g~~~l  235 (329)
T cd02033         179 VGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTGE---AQAFAAHAGIPIL  235 (329)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH---HHHHHHHCCCCEE
T ss_conf             96780889998878999999998638971011598606887249---9999997199579


No 404
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.73  E-value=0.028  Score=37.60  Aligned_cols=90  Identities=20%  Similarity=0.202  Sum_probs=53.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
                      ..|+++|+-||||||-+-+|....-. .+..+.++.                     ++.......+             
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~-~~~~~t~~~---------------------~~~~~~~~~~-------------   50 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFP-EGYPPTIGN---------------------LDPAKTIEPY-------------   50 (219)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEE---------------------CCCCCEEECC-------------
T ss_conf             79999999999889999999647676-556761454---------------------0432036226-------------


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCHHCCHHHHHHH
Q ss_conf             4158869983344222112468999999851--3851100031011122568888
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKSL--TNPHEILLVADALTGQDAVHLA  233 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~--~~p~e~~lV~da~~Gq~a~~~a  233 (461)
                      ....+..++||+|        .++++.+...  ..++-.++|.|.+.-....+..
T Consensus        51 ~~~~~~~~~Dt~g--------q~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~   97 (219)
T COG1100          51 RRNIKLQLWDTAG--------QEEYRSLRPEYYRGANGILIVYDSTLRESSDELT   97 (219)
T ss_pred             CCCEEEEEEECCC--------HHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf             6600267676798--------6999998875043897899999762056578899


No 405
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.73  E-value=0.13  Score=32.55  Aligned_cols=45  Identities=24%  Similarity=0.188  Sum_probs=29.4

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH
Q ss_conf             418996234433346889999999986148950782054221004779
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ  147 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ  147 (461)
                      --.|.++|+|||||||.+--|+-.+.-..|. |-+  ...-|.|-++|
T Consensus       338 GeriaIvG~NGsGKSTLlk~L~G~l~p~~G~-i~~--~~~v~igy~~Q  382 (638)
T PRK10636        338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGE-IGL--AKGIKLGYFAQ  382 (638)
T ss_pred             CCEEEEECCCCCCHHHHHHHHCCCCCCCCCE-EEE--CCCCCCCCCHH
T ss_conf             8479997478713889999972887888856-998--44443341107


No 406
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=95.72  E-value=0.047  Score=35.92  Aligned_cols=95  Identities=17%  Similarity=0.131  Sum_probs=58.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC---------------CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             44333468899999999861489507820542---------------210047799998510347422233210368999
Q gi|254780711|r  108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDV---------------HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA  172 (461)
Q Consensus       108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt---------------~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~  172 (461)
                      +-|+|||-++.-||.+|++ .|.+|++++=--               ..-.+=|-+ .+++..++|++.+..   -+   
T Consensus        66 vGGTGKTP~vi~L~~~L~~-~G~k~~IlSRGYg~~~~~~~~v~~~~~~~~vGDEpl-lla~~~~~pV~V~~~---R~---  137 (339)
T PRK01906         66 VGGTGKTPTVIALVDALRA-AGFTPGVVSRGYGAKVKAPTAVTPASRASDAGDEPL-LIARRTDAPVWVCPD---RV---  137 (339)
T ss_pred             ECCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCEEECCCCCHHHCCCHHH-HHHHCCCCEEEEECC---HH---
T ss_conf             6887577999999999997-699559985464555677666237864433176899-987435960898256---99---


Q ss_pred             HHHHHHH--HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf             9999999--7415886998334422211246899999985138511000310111
Q gi|254780711|r  173 IRATQSA--RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT  225 (461)
Q Consensus       173 ~~a~~~a--~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~  225 (461)
                       +|.+.+  ...++|+||.|-.=.| ..             +.+|--++|+|+..
T Consensus       138 -~~~~~l~~~~~~~dvIIlDDGfQh-~~-------------l~rDl~Ivl~d~~~  177 (339)
T PRK01906        138 -AAAQALLAAHPEVDVIVSDDGLQH-YR-------------LARDVEIVVFDHRL  177 (339)
T ss_pred             -HHHHHHHHHCCCCCEEEECCCCCC-CC-------------CCCCEEEEEECCCC
T ss_conf             -999999974889988995685313-33-------------46875999987877


No 407
>cd01882 BMS1 Bms1.  Bms1 is an essential, evolutionarily conserved, nucleolar protein.  Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits.  Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit.  The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly.  It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.72  E-value=0.057  Score=35.23  Aligned_cols=43  Identities=28%  Similarity=0.415  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC----CCEEEECCC
Q ss_conf             2588418996234433346889999999986148----950782054
Q gi|254780711|r   96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK----KKILMASLD  138 (461)
Q Consensus        96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~----~kV~lv~~D  138 (461)
                      ...+|.++.++|+.|+||||-+--|..+|.++.-    -.+-+|+.-
T Consensus        35 ~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K   81 (225)
T cd01882          35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGK   81 (225)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf             89999699998989977889999999998544375578887999468


No 408
>KOG2004 consensus
Probab=95.70  E-value=0.18  Score=31.49  Aligned_cols=75  Identities=20%  Similarity=0.299  Sum_probs=38.1

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
                      -.++.|+||.|+|||.-.--+|+-+ .++-.+.-+..       --|+-.+-+.+      ..+.|.=|-.++ +++...
T Consensus       438 GkIlCf~GPPGVGKTSI~kSIA~AL-nRkFfRfSvGG-------~tDvAeIkGHR------RTYVGAMPGkiI-q~LK~v  502 (906)
T KOG2004         438 GKILCFVGPPGVGKTSIAKSIARAL-NRKFFRFSVGG-------MTDVAEIKGHR------RTYVGAMPGKII-QCLKKV  502 (906)
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHH-CCCEEEEECCC-------CCCHHHHCCCC------EEEECCCCHHHH-HHHHHH
T ss_conf             8379986899877321899999984-87469985366-------34277642542------110014884899-999861


Q ss_pred             HHCCCCEEEEE
Q ss_conf             74158869983
Q gi|254780711|r  180 RDGGYDAVILD  190 (461)
Q Consensus       180 ~~~~~D~iiiD  190 (461)
                      +-++ -++|||
T Consensus       503 ~t~N-PliLiD  512 (906)
T KOG2004         503 KTEN-PLILID  512 (906)
T ss_pred             CCCC-CEEEEE
T ss_conf             7788-658853


No 409
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.70  E-value=0.22  Score=30.82  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             89962344333468899999999861489507820542
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV  139 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt  139 (461)
                      .+.+||++||||||-+.=|..+|.-..|. |.+-..|.
T Consensus       343 ~vaIVG~SGsGKSTLl~LL~g~y~p~~G~-I~idg~di  379 (569)
T PRK10789        343 MLGICGPTGSGKSTLLSLIQRHFDVSEGD-IRFHDIPL  379 (569)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCC-EEEECEEC
T ss_conf             89987999998799999999776426787-46501013


No 410
>pfam00406 ADK Adenylate kinase.
Probab=95.70  E-value=0.023  Score=38.25  Aligned_cols=102  Identities=17%  Similarity=0.256  Sum_probs=52.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHHHHHHH
Q ss_conf             6234433346889999999986148950782054221004779999851034742223---3210368999999999974
Q gi|254780711|r  105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV---IPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~---~~~~dp~~i~~~a~~~a~~  181 (461)
                      ++|+.||||+|-+.+||..|    +. +-+-+.|.+|..+-.+-. +++++.- ++..   .+..-...++.+++...  
T Consensus         1 i~G~PGsGKgTqa~~La~~~----~~-~~is~GdllR~~~~~~s~-~g~~i~~-~i~~G~lvpd~i~~~l~~~~l~~~--   71 (186)
T pfam00406         1 LLGPPGAGKGTQAERIVQKY----GI-VHLSTGDLLRAEVKSGTE-LGKEAKE-YMDKGELVPDEVVVGLVKERLEQN--   71 (186)
T ss_pred             CCCCCCCCHHHHHHHHHHHH----CC-EEECHHHHHHHHHHCCCH-HHHHHHH-HHHCCCCCCHHHHHHHHHHHHCCC--
T ss_conf             91889898599999999985----99-067699999999862887-9999999-998699543099999999997074--


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             158869983344222112468999999851385110
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEI  217 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~  217 (461)
                      ....-+|+|=--|.......++++-.  ....|+.+
T Consensus        72 ~~~~g~iLDGfPRt~~Qa~~l~~~l~--~~~~~~~V  105 (186)
T pfam00406        72 DCKNGFLLDGFPRTVPQAEALEEMLE--YGIKLDYV  105 (186)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHH--CCCCCCEE
T ss_conf             55486687379898999999999997--49987779


No 411
>PRK02496 adk adenylate kinase; Provisional
Probab=95.69  E-value=0.042  Score=36.23  Aligned_cols=40  Identities=30%  Similarity=0.441  Sum_probs=30.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf             899623443334688999999998614895078205422100477
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE  146 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e  146 (461)
                      .|+++|+.||||+|-+.+||.+|    +. +-+.+.|.+|...-+
T Consensus         3 riillG~PGSGKgTqa~~L~~~~----~~-~his~GdllR~~~~~   42 (185)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHL----QI-PHISTGDILRQAITE   42 (185)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----CC-EEECHHHHHHHHHHC
T ss_conf             89997999999899999999996----99-778888999999874


No 412
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.68  E-value=0.02  Score=38.74  Aligned_cols=47  Identities=23%  Similarity=0.359  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf             258841899623443334688999999998614895078205422100
Q gi|254780711|r   96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA  143 (461)
Q Consensus        96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a  143 (461)
                      ...+|.+|.|.|+.||||||-+-.|...|.. .|+++.+.-.|..|.|
T Consensus       439 ~g~~~~~iw~tGlsgsGKstiA~~le~~L~~-~g~~~~~LDGd~lR~g  485 (613)
T PRK05506        439 KGQKPATVWFTGLSGSGKSTIANLVERRLHA-LGRHTYVLDGDNVRHG  485 (613)
T ss_pred             HCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHHH
T ss_conf             4899769999778989747999999999997-7998799880898741


No 413
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=95.67  E-value=0.15  Score=32.15  Aligned_cols=161  Identities=14%  Similarity=0.117  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99999998718774210002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r   77 IVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ  156 (461)
Q Consensus        77 iv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~  156 (461)
                      -+.++++..|......... ...|..|.+||=.-+||.|-+-+|..     +.+ + +|+                   +
T Consensus       430 dLld~i~~~l~~~~~~~~~-~~~~~rIAIIGRPNVGKSTLiN~Llg-----eeR-~-IVs-------------------~  482 (714)
T PRK09518        430 DLLDVVLDSLKQHERTSGY-LSGLRRVALVGRPNVGKSSLLNQLTR-----EER-A-VVN-------------------D  482 (714)
T ss_pred             HHHHHHHHHCCCCCCCCCC-CCCCCEEEEECCCCCCHHHHHHHHHC-----CCE-E-EEC-------------------C
T ss_conf             9999999658888754343-46773588866998878999999968-----975-8-856-------------------8


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC---CC--HHHHHHHHHHHHHHCCCCCCCCCCCHHCC---HH
Q ss_conf             742223321036899999999997415886998334422---21--12468999999851385110003101112---25
Q gi|254780711|r  157 VDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN---HI--NDSLMQEISEIKSLTNPHEILLVADALTG---QD  228 (461)
Q Consensus       157 v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~---~~--d~~lm~El~~i~~~~~p~e~~lV~da~~G---q~  228 (461)
                      +|    ..-.||+++.      +.-++..++||||||--   +.  ..+...-++.+..+-..|-++||+||+-|   ||
T Consensus       483 ia----GTTRDsId~~------~~~~g~~~~lIDTAGiRkk~k~~~~iE~~S~~rt~~aI~~adVvllviDA~~git~QD  552 (714)
T PRK09518        483 LA----GTTRDPVDEI------VNIDGKDWLFVDTAGIRRKQKKLTGAEYYASLRTQAAIERCELALILFDASQPISEQD  552 (714)
T ss_pred             CC----CCEECEEEEE------EEECCEEEEEEECHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHH
T ss_conf             89----8502305567------9999978999986001524432543227999999998865889999986776752899


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCC-HHH------HHHHHHCCCHHHEEC
Q ss_conf             68888988763584407764115766330-367------778884787302615
Q gi|254780711|r  229 AVHLARNFDKIVDLTGIILTRMDGDGRGG-AAL------SMRTVTGKPIKAIGT  275 (461)
Q Consensus       229 a~~~a~~F~~~~~i~giIlTKlD~~akgG-~al------s~~~~~~~PI~fig~  275 (461)
                       ..++..-.+.=---=+++.|.|--..-- ..+      ........|+.||+.
T Consensus       553 -~~Ia~~i~~~gk~~IivvNKWDLv~~~~~~~~~~~i~~~l~~~~~apiv~iSA  605 (714)
T PRK09518        553 -LRVMSMAVDAGRALVLAFNKWDLMDEFRRQRLEREIDTEFDRVMWAERVNISA  605 (714)
T ss_pred             -HHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             -99999999859937999961430686689999999997563689998899966


No 414
>cd03221 ABCF_EF-3 ABCF_EF-3  Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth.  EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site.  The reaction requires ATP hydrolysis.  EF-3 contains two ATP nucleotide binding sequence (NBS) motifs.  NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.67  E-value=0.026  Score=37.90  Aligned_cols=103  Identities=20%  Similarity=0.168  Sum_probs=54.3

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             00025884189962344333468899999999861489507820542210047799998510347422233210368999
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA  172 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~  172 (461)
                      +...++  .++.++|+||+||||.+-=|+..++...|. |-+  .+..+.+=+.|               -++.---.  
T Consensus        21 ~~i~~g--e~~~l~G~NGsGKTTl~~~l~G~~~~~~G~-i~~--~~~~~i~y~~Q---------------LSgGqkqr--   78 (144)
T cd03221          21 LTINPG--DRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTW--GSTVKIGYFEQ---------------LSGGEKMR--   78 (144)
T ss_pred             EEECCC--CEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEE--CCCCEEEEEHH---------------CCHHHHHH--
T ss_conf             998799--999999899984999999984898898509-999--99608998700---------------79999999--


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             9999999741588699833442221124689999998513851100031
Q gi|254780711|r  173 IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVA  221 (461)
Q Consensus       173 ~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~  221 (461)
                       =++..+-....+++|.|-+= .+.|..-.+++.+..+..+  -+++++
T Consensus        79 -~~la~al~~~p~iliLDEPt-~~LD~~~~~~i~~~l~~~~--~tii~v  123 (144)
T cd03221          79 -LALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEYP--GTVILV  123 (144)
T ss_pred             -HHHHHHHCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHCC--CEEEEE
T ss_conf             -99999972599899995775-5589999999999999709--999999


No 415
>PRK13766 Hef nuclease; Provisional
Probab=95.66  E-value=0.25  Score=30.40  Aligned_cols=120  Identities=19%  Similarity=0.242  Sum_probs=67.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHHH
Q ss_conf             99623443334688999999998614895078205422100477999985103474222--3321036899999999997
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLE--VIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~--~~~~~dp~~i~~~a~~~a~  180 (461)
                      .++|=++|+|||.-++.+++++....+.|+++. +.| ||=+..|.+.+.+.+++|-..  ...|..+.+  .+.-.+ .
T Consensus        32 tiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFL-aPT-~pLV~Qq~~~~~~~l~i~~~~i~~ltG~~~~~--~r~~~w-~  106 (764)
T PRK13766         32 TLVVLPTGLGKTAIALLVIAERLQKYGGKVLIL-APT-KPLVEQHAEFFRKFLNIDPEKIVVLTGEISPE--KRAALW-E  106 (764)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE-CCC-HHHHHHHHHHHHHHCCCCCCEEEEEECCCCHH--HHHHHH-C
T ss_conf             899959986689999999999997489889998-588-88999999999997099955289998887827--689986-0


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCC-H--HCCHHHHH-HHHHHHH
Q ss_conf             415886998334422211246899999985138511-000310-1--11225688-8898876
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHE-ILLVAD-A--LTGQDAVH-LARNFDK  238 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e-~~lV~d-a--~~Gq~a~~-~a~~F~~  238 (461)
                        .+ -|+|-|+..+.+|  |.      ...+.++. .+||+| |  .+|..+.. +++.|.+
T Consensus       107 --~~-~Viv~TPQvl~nd--L~------~g~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~  158 (764)
T PRK13766        107 --KA-KVIVATPQVIEND--LL------AGRISLEDVSLLIFDEAHRAVGNYAYVFIAERYHE  158 (764)
T ss_pred             --CC-CEEEECCHHHHHH--HH------HCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             --79-9999990899999--98------29867888228999746666677628999999985


No 416
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif (motif II). This domain contains the ATP- binding region.
Probab=95.66  E-value=0.19  Score=31.19  Aligned_cols=127  Identities=24%  Similarity=0.246  Sum_probs=57.0

Q ss_pred             EEEECCCCCCHHHHHH-HHHHHHHHH--CCCCEEEECCCCCCCHHH---HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9962344333468899-999999861--489507820542210047---7999985103474222332103689999999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTA-KIAYHLKTL--KKKKILMASLDVHRPAAQ---EQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus       103 IllvGl~GsGKTTT~a-KLA~~~~~~--~~~kV~lv~~Dt~R~aA~---eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      ++..-++|||||.+-. =+..++...  .+..-++|-+-| |--|.   +..+.+++..++.+.....+.+...-    .
T Consensus        39 vi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PT-rELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~----~  113 (203)
T cd00268          39 VIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT-RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQ----I  113 (203)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHH----H
T ss_conf             8997579972228888699999861667689669999687-9999999999998505798389998389887999----9


Q ss_pred             HHHHHCCCCEEEEECCCCCCC------------------------HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHH
Q ss_conf             999741588699833442221------------------------12468999999851385110003101112256888
Q gi|254780711|r  177 QSARDGGYDAVILDTAGRNHI------------------------NDSLMQEISEIKSLTNPHEILLVADALTGQDAVHL  232 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR~~~------------------------d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~  232 (461)
                      +.. .++. -|+|-|+||+..                        |....+++..|.+...++--.+...||...+..+.
T Consensus       114 ~~l-~~~~-~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD~ll~~gf~~~i~~I~~~l~~~~Q~~lfSAT~~~~v~~l  191 (203)
T cd00268         114 RKL-KRGP-HIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDL  191 (203)
T ss_pred             HHH-HCCC-EEEEECCHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
T ss_conf             998-5387-59996818999999848865132248999858888747769999999985896777999980499889999


Q ss_pred             HHHH
Q ss_conf             8988
Q gi|254780711|r  233 ARNF  236 (461)
Q Consensus       233 a~~F  236 (461)
                      ++.|
T Consensus       192 ~~~~  195 (203)
T cd00268         192 ARKF  195 (203)
T ss_pred             HHHH
T ss_conf             9997


No 417
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=95.65  E-value=0.19  Score=31.27  Aligned_cols=144  Identities=24%  Similarity=0.315  Sum_probs=77.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      +|.++|-.-+||+|---+|.       +++.++|+ |+               .|+.-       |...      ..+.-
T Consensus         1 ~VaIvGrpNVGKStLfN~L~-------~~~~aIv~-~~---------------~G~TR-------D~~~------~~~~~   44 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLT-------GKRDAIVA-DT---------------PGVTR-------DRKY------GDAEW   44 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHH-------CCCEEECC-CC---------------CCCCC-------CCEE------EEEEE
T ss_conf             98999999987899999987-------88617615-98---------------99887-------7337------99999


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC-CCCCCCCCCCHHCCH--HHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             15886998334422211246899999-98513-851100031011122--568888988763584407764115766330
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISE-IKSLT-NPHEILLVADALTGQ--DAVHLARNFDKIVDLTGIILTRMDGDGRGG  257 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~-i~~~~-~p~e~~lV~da~~Gq--~a~~~a~~F~~~~~i~giIlTKlD~~akgG  257 (461)
                      .++.+.||||||-...++.+-+.+.. ...++ +.|-++||+||..|-  +-.+.++-..+.-.--=+++-|+|+.. .-
T Consensus        45 ~~~~~~liDT~G~~~~~~~~~~~~~~q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~-~~  123 (429)
T TIGR03594        45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK-ED  123 (429)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-HH
T ss_conf             99079999898989874378999999999999867999999857768986799999999871997899998346753-14


Q ss_pred             HHHHHHHHHCCC-HHHEEC--CCCCCCC
Q ss_conf             367778884787-302615--8672321
Q gi|254780711|r  258 AALSMRTVTGKP-IKAIGT--GEKINDL  282 (461)
Q Consensus       258 ~als~~~~~~~P-I~fig~--GE~~~dl  282 (461)
                      ..++-.+..|.. +.+|+.  |..+++|
T Consensus       124 ~~~~ef~~LG~~~~i~iSA~h~~Gi~~L  151 (429)
T TIGR03594       124 AVAAEFYSLGFGEPIPISAEHGRGIGDL  151 (429)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf             5699999836898688742046799999


No 418
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.63  E-value=0.098  Score=33.45  Aligned_cols=137  Identities=17%  Similarity=0.233  Sum_probs=71.3

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE--ECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             9999871877421000258841899623443334688999999998614895078--20542210047799998510347
Q gi|254780711|r   80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILM--ASLDVHRPAAQEQLRYLGEQIQV  157 (461)
Q Consensus        80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~l--v~~Dt~R~aA~eQL~~~a~~~~v  157 (461)
                      |.|.+++...        .+-.-|-++|--|+||||++-.|-++--. =.+++.-  ..+|. +  ..||-+      |+
T Consensus         8 ~~~~~~m~~p--------e~IRNI~IiaHvdaGKTTLtE~lL~~sg~-i~~~~~~~~t~~D~-~--~~E~eR------gI   69 (730)
T PRK07560          8 EKILELMRNP--------EQIRNIGIVAHIDHGKTTLSDNLLAGAGM-ISEELAGKQLALDY-D--EEEQAR------GI   69 (730)
T ss_pred             HHHHHHHHCH--------HHCCEEEEECCCCCCHHHHHHHHHHHCCC-CCCCCCCCCEECCC-H--HHHHHC------CC
T ss_conf             9999986187--------63528999937998989999999996499-86534798641788-5--999972------98


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHH
Q ss_conf             42223321036899999999997415886998334422211246899999985138511000310111225-----6888
Q gi|254780711|r  158 DTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHL  232 (461)
Q Consensus       158 ~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~  232 (461)
                      .+.+..     +.+.+    ....+.|-+=||||.|-  .  +-..|...-.+++  |-.++|+||.-|=.     ...|
T Consensus        70 TI~sa~-----~sl~~----~~~~~~~~INlIDTPGh--~--DF~~Ev~~aLrv~--DgAvvVvdav~GV~~qTe~v~rq  134 (730)
T PRK07560         70 TIKAAN-----VSMVH----EYEGKEYLINLIDTPGH--V--DFGGDVTRAMRAV--DGAIVVVDAVEGVMPQTETVLRQ  134 (730)
T ss_pred             CEEECC-----EEEEE----EECCCCEEEEEECCCCC--C--HHHHHHHHHHHHH--CEEEEEEECCCCCCCHHHHHHHH
T ss_conf             575211-----02898----75698378999819697--3--0599999999885--87899997898877318999999


Q ss_pred             HHHHHHHCCCCCEEEEECCC
Q ss_conf             89887635844077641157
Q gi|254780711|r  233 ARNFDKIVDLTGIILTRMDG  252 (461)
Q Consensus       233 a~~F~~~~~i~giIlTKlD~  252 (461)
                      |  ....++. =++++|+|-
T Consensus       135 a--~~~~~p~-ilfINKmDR  151 (730)
T PRK07560        135 A--LEERVRP-VLFINKVDR  151 (730)
T ss_pred             H--HHCCCCE-EEEEECCCC
T ss_conf             9--8779997-999868662


No 419
>cd04159 Arl10_like Arl10-like subfamily.  Arl9/Arl10 was identified from a human cancer-derived EST dataset.  No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.63  E-value=0.056  Score=35.31  Aligned_cols=86  Identities=30%  Similarity=0.364  Sum_probs=44.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
                      |+++|..||||||-+-++..     +....     ++ .|           .+|+.+...                 ...
T Consensus         2 I~llG~~~~GKTsll~~~~~-----~~f~~-----~~-~p-----------Tig~~~~~i-----------------~~~   42 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAG-----GQFSE-----DT-IP-----------TVGFNMRKV-----------------TKG   42 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHC-----CCCCC-----CC-CC-----------CCCEEEEEE-----------------EEC
T ss_conf             89999999869999999975-----99988-----61-67-----------325058999-----------------989


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH
Q ss_conf             5886998334422211246899999985138511000310111225688889
Q gi|254780711|r  183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR  234 (461)
Q Consensus       183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~  234 (461)
                      ++.+-|.||||.-.     +..+...+ .-+-+-+++|+|++- .+.++.++
T Consensus        43 ~~~l~iwDt~G~e~-----~~~l~~~y-~~~~~~ii~V~D~sd-~~s~~~~~   87 (159)
T cd04159          43 NVTLKVWDLGGQPR-----FRSMWERY-CRGVNAIVYVVDAAD-RTALEAAK   87 (159)
T ss_pred             CEEEEEEECCCHHH-----HHHHHHHH-HCCCCEEEECCCCCC-HHHHHHHH
T ss_conf             99999997983587-----79999987-468636875157787-88999999


No 420
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=95.62  E-value=0.11  Score=32.95  Aligned_cols=93  Identities=12%  Similarity=0.151  Sum_probs=63.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHH
Q ss_conf             884189962344333468899999999861489507820542--21004779999851034742--22332103689999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV--HRPAAQEQLRYLGEQIQVDT--LEVIPEQSPEKIAI  173 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt--~R~aA~eQL~~~a~~~~v~~--~~~~~~~dp~~i~~  173 (461)
                      .-|+.|.|    |.|....++.+   ++..+.++|++|+ |.  .|.|-++++...-+..++.+  |......-+.+.+.
T Consensus         7 ~~Pt~i~f----G~g~~~~l~~~---~~~~G~k~~lvvt-~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~   78 (383)
T PRK09860          7 FIPSVNVI----GADSLTDAMNM---MADYGFTRTLIVT-DNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVA   78 (383)
T ss_pred             ECCCCEEE----CCCHHHHHHHH---HHHCCCCEEEEEC-CCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf             58981498----83899999999---9982998799982-8456657469999999987699589968952796999999


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf             99999974158869983344222112
Q gi|254780711|r  174 RATQSARDGGYDAVILDTAGRNHIND  199 (461)
Q Consensus       174 ~a~~~a~~~~~D~iiiDTaGR~~~d~  199 (461)
                      ++++.++..++|+|| =--|-+..|.
T Consensus        79 ~~~~~~r~~~~D~iv-avGGGS~iD~  103 (383)
T PRK09860         79 AGLKLLKENNCDSVI-SLGGGSPHDC  103 (383)
T ss_pred             HHHHHHHHCCCCEEE-EECCCCHHHH
T ss_conf             999999873999999-9389622678


No 421
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=95.61  E-value=0.056  Score=35.32  Aligned_cols=25  Identities=32%  Similarity=0.573  Sum_probs=19.0

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             8418996234433346889999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYH  123 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~  123 (461)
                      -|.-|||+||+|||||--+-.||..
T Consensus        49 ~pkNILmIGPTGvGKTeIARrLAkl   73 (442)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKL   73 (442)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             6431688788886678999999998


No 422
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=95.61  E-value=0.012  Score=40.29  Aligned_cols=167  Identities=19%  Similarity=0.143  Sum_probs=84.5

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             00025884189962344333468899999999861489507820542210047799998510347422233210368999
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA  172 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~  172 (461)
                      +.+.-..-.|.-+.|+||+||||+.-=||..+.-..| +|.+..+|+.|-..     .+-.++||-++...--.+  -.+
T Consensus        21 VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G-~v~idg~d~~~~p~-----~vrr~IGVl~~e~glY~R--lT~   92 (245)
T COG4555          21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSG-KVTIDGVDTVRDPS-----FVRRKIGVLFGERGLYAR--LTA   92 (245)
T ss_pred             EEEEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCCC-EEEEEECCCCCCHH-----HHHHHCCEECCCCCHHHH--HHH
T ss_conf             2578506649998768988712379999983258886-49984002101718-----775202131377670355--308


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH--------------------HHHHHHCCCCCCCCCCCH-HCCHHHH-
Q ss_conf             999999974158869983344222112468999--------------------999851385110003101-1122568-
Q gi|254780711|r  173 IRATQSARDGGYDAVILDTAGRNHINDSLMQEI--------------------SEIKSLTNPHEILLVADA-LTGQDAV-  230 (461)
Q Consensus       173 ~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El--------------------~~i~~~~~p~e~~lV~da-~~Gq~a~-  230 (461)
                      ++-+.+|.. -||+-=.++.-|.   ++|+++|                    -.|.+++--+-.++|+|- ++|-|.. 
T Consensus        93 rEnl~~Fa~-L~~l~~~~~kari---~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~  168 (245)
T COG4555          93 RENLKYFAR-LNGLSRKEIKARI---AELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT  168 (245)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH
T ss_conf             999999999-9624026789999---999988675989988876414005788999999843987699768987742787


Q ss_pred             -HHHHHHHHHCCCC--CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC
Q ss_conf             -8889887635844--077641157663303677788847873026158672
Q gi|254780711|r  231 -HLARNFDKIVDLT--GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI  279 (461)
Q Consensus       231 -~~a~~F~~~~~i~--giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~  279 (461)
                       ...+.|-.+..-.  -+|++--        +++=+.+.---+.-+-.||.+
T Consensus       169 ~r~~~dfi~q~k~egr~viFSSH--------~m~EvealCDrvivlh~Gevv  212 (245)
T COG4555         169 RRKFHDFIKQLKNEGRAVIFSSH--------IMQEVEALCDRVIVLHKGEVV  212 (245)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECC--------CHHHHHHHHHEEEEEECCCEE
T ss_conf             99999999985257948999613--------179999861358997468089


No 423
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=95.60  E-value=0.11  Score=33.20  Aligned_cols=85  Identities=11%  Similarity=0.125  Sum_probs=60.1

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEECC-CCCCCHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf             3334688999999998614895078205-4221004779999851034742--223321036899999999997415886
Q gi|254780711|r  110 GSGKTTTTAKIAYHLKTLKKKKILMASL-DVHRPAAQEQLRYLGEQIQVDT--LEVIPEQSPEKIAIRATQSARDGGYDA  186 (461)
Q Consensus       110 GsGKTTT~aKLA~~~~~~~~~kV~lv~~-Dt~R~aA~eQL~~~a~~~~v~~--~~~~~~~dp~~i~~~a~~~a~~~~~D~  186 (461)
                      |.|   .+.+|...++..+.+++++|+- ...+.|.++++...-+..++++  |......-+.+.+.++++.+++.++|.
T Consensus        13 G~g---~l~~l~~~~~~~G~k~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~vf~~v~pnP~~~~V~~~~~~~r~~~~D~   89 (381)
T PRK10624         13 GRG---AVGALTDEVKRRGYHKALIVTDKTLVQCGVVAKVTDKLDAAGLAYEIYDGVKPNPTISVVKEGLEVFQASGADY   89 (381)
T ss_pred             CCC---HHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf             976---99999999997499879999696545563699999999876983999889258989999999999998649998


Q ss_pred             EEEECCCCCCCH
Q ss_conf             998334422211
Q gi|254780711|r  187 VILDTAGRNHIN  198 (461)
Q Consensus       187 iiiDTaGR~~~d  198 (461)
                      || =--|-+..|
T Consensus        90 Ii-avGGGSviD  100 (381)
T PRK10624         90 LI-AIGGGSPQD  100 (381)
T ss_pred             EE-EECCCHHHH
T ss_conf             99-808940888


No 424
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases.  Arf proteins are activators of phospholipase D isoforms.  Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated.  Arfs are N-terminally myristoylated.  Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner.  They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site.  Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins.  Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus.  Most other Arf family proteins are so far relatively poorly characterized.  Thu
Probab=95.60  E-value=0.034  Score=36.95  Aligned_cols=132  Identities=22%  Similarity=0.376  Sum_probs=61.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
                      |+++|..||||||-+-+|.    .  +. .  .  ++ -|           .+++.+...                 .-+
T Consensus         2 i~ilG~~~vGKTsll~~l~----~--~~-~--~--~~-~p-----------Tig~~~~~i-----------------~~~   41 (158)
T cd00878           2 ILILGLDGAGKTTILYKLK----L--GE-V--V--TT-IP-----------TIGFNVETV-----------------EYK   41 (158)
T ss_pred             EEEECCCCCCHHHHHHHHH----C--CC-C--C--CC-CC-----------EECCCEEEE-----------------EEC
T ss_conf             9999999998899999995----3--99-8--8--74-45-----------607408999-----------------848


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHHHHC---CCC----CEEEEECCCCC
Q ss_conf             5886998334422211246899999985138511000310111225688889-887635---844----07764115766
Q gi|254780711|r  183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR-NFDKIV---DLT----GIILTRMDGDG  254 (461)
Q Consensus       183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~~~~---~i~----giIlTKlD~~a  254 (461)
                      ++.+.|.||+|....     ..+.... .-+.+-+++|+|++- .+.++.++ .+.+.+   ...    =++.+|.|-..
T Consensus        42 ~~~l~iwDt~G~~~~-----~~~~~~y-~~~a~~~i~V~D~t~-~~s~~~~~~~~~~~~~~~~~~~~piliv~NK~Dl~~  114 (158)
T cd00878          42 NVSFTVWDVGGQDKI-----RPLWKHY-YENTNGIIFVVDSSD-RERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG  114 (158)
T ss_pred             CEEEEEEECCCCCCC-----CHHHHHH-HCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf             899999988997221-----4489987-276877689983798-889999999999998660557653898760547665


Q ss_pred             -C----CCHHHHHHHHHCCCHHHEE----CCCCCCC
Q ss_conf             -3----3036777888478730261----5867232
Q gi|254780711|r  255 -R----GGAALSMRTVTGKPIKAIG----TGEKIND  281 (461)
Q Consensus       255 -k----gG~als~~~~~~~PI~fig----~GE~~~d  281 (461)
                       +    --..+......+.++.|+.    +||.+++
T Consensus       115 ~~~~~ei~~~l~~~~~~~~~~~~~~~SAktg~gI~e  150 (158)
T cd00878         115 ALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDE  150 (158)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf             789999999985875107998999998887929899


No 425
>PRK12736 elongation factor Tu; Reviewed
Probab=95.57  E-value=0.0043  Score=43.79  Aligned_cols=130  Identities=18%  Similarity=0.130  Sum_probs=70.5

Q ss_pred             CCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             258841-8996234433346889999999986148950782054221004779999851034742223321036899999
Q gi|254780711|r   96 NAPSPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR  174 (461)
Q Consensus        96 ~~~~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~  174 (461)
                      ...+|+ .|.++|-=-+||||.++-|...+... ++.-+--.      ...|+++.=- .-|+.+-..            
T Consensus         7 ~~~k~~~ni~~~GHVD~GKSTL~g~L~~~~~~~-~~~~~~~~------~~~D~~~eEr-~rGiTid~~------------   66 (394)
T PRK12736          7 ERSKPHVNIGTIGHVDHGKTTLTAAITKVLAER-GLAQAKDY------ASIDAAPEEK-ARGITINTA------------   66 (394)
T ss_pred             CCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHC-CCCHHHHH------HHHCCCHHHH-CCCCEEEEE------------
T ss_conf             789987499999512884898998975045450-65102222------3311665562-478217841------------


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHH---HHHHCCCCC-EE-EEE
Q ss_conf             9999974158869983344222112468999999851385110003101112256888898---876358440-77-641
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARN---FDKIVDLTG-II-LTR  249 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~---F~~~~~i~g-iI-lTK  249 (461)
                       ..++..+++.+.+||++|--..=.++      |..+...|-.+||+||..|--  .|.+.   ....+++.. +| +||
T Consensus        67 -~~~~~t~~~~~~~iD~PGH~~fi~nm------i~Ga~~~D~alLVV~A~~G~~--~QT~EHl~l~~~lgv~~~IV~vnK  137 (394)
T PRK12736         67 -HVEYETEKRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVAATDGPM--PQTREHILLARQVGVPYIVVFLNK  137 (394)
T ss_pred             -EEEEECCCEEEEEEECCCCHHHHCCE------EEEECCCCEEEEEEECCCCCH--HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             -89997288369998889725431104------443534665899998587746--779999999998299915999988


Q ss_pred             CCCCC
Q ss_conf             15766
Q gi|254780711|r  250 MDGDG  254 (461)
Q Consensus       250 lD~~a  254 (461)
                      +|-..
T Consensus       138 ~D~v~  142 (394)
T PRK12736        138 VDLVD  142 (394)
T ss_pred             CCCCC
T ss_conf             78998


No 426
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.57  E-value=0.11  Score=33.14  Aligned_cols=53  Identities=26%  Similarity=0.281  Sum_probs=33.3

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC-----CCCCCCHHHHH
Q ss_conf             100025884189962344333468899999999861489507820-----54221004779
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS-----LDVHRPAAQEQ  147 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~-----~Dt~R~aA~eQ  147 (461)
                      .+...++  -++-++|+|||||||.+-=++..+.-..|. |.+-.     .|.++.+..+.
T Consensus        26 s~~v~~G--Ei~~iiG~nGaGKSTLl~~i~G~~~p~~G~-I~~~g~~~~~~~~~~~~~~~~   83 (258)
T PRK11701         26 SFDLYPG--EVLGIVGESGSGKTTLLNALSARLAPDAGE-VHYRMRDGQLRDLYALSEAER   83 (258)
T ss_pred             EEEECCC--CEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCCCCCCCHHHCCHHHH
T ss_conf             7788799--799998889988999999985678888873-997461157677344599999


No 427
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.57  E-value=0.041  Score=36.33  Aligned_cols=89  Identities=22%  Similarity=0.128  Sum_probs=48.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
                      -++-++|+||+||||++-=|+-.++-..|. +-+   |-.++.-..|-        +. + +..+.-     +-++..+-
T Consensus        26 Eiv~ilGpNGaGKSTllk~i~G~l~p~~G~-i~~---~g~~~~~~pq~--------~~-L-SGGqrQ-----Rv~iAral   86 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDN-DEW---DGITPVYKPQY--------ID-L-SGGELQ-----RVAIAAAL   86 (177)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCC-EEE---CCCCEECCCCC--------CC-C-CHHHHH-----HHHHHHHH
T ss_conf             899998999999999999996886788994-666---68612215551--------50-7-989999-----99999998


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             41588699833442221124689999998
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIK  209 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~  209 (461)
                      ..+.|++|.|-+= .+.|.....++.++.
T Consensus        87 ~~~p~lllLDEPt-s~LD~~~r~~i~~~i  114 (177)
T cd03222          87 LRNATFYLFDEPS-AYLDIEQRLNAARAI  114 (177)
T ss_pred             HCCCCEEEECCCC-CCCCHHHHHHHHHHH
T ss_conf             2399999974886-538999999999999


No 428
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB.  This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.55  E-value=0.016  Score=39.42  Aligned_cols=78  Identities=22%  Similarity=0.176  Sum_probs=42.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233---210368999999999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI---PEQSPEKIAIRATQS  178 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~---~~~dp~~i~~~a~~~  178 (461)
                      -|+++|++||||||++.-|+.++-.  ..++..+ -|++-.    .|.   ...-+.+....   .+..+.. ..+++..
T Consensus        27 nIlIsG~tGSGKTTll~al~~~i~~--~~rivti-Ed~~El----~l~---~~~~v~l~~~~~~~~~~~~~~-~~~li~~   95 (186)
T cd01130          27 NILISGGTGSGKTTLLNALLAFIPP--DERIITI-EDTAEL----QLP---HPNWVRLVTRPGNVEGSGEVT-MADLLRS   95 (186)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCC--CCCEEEE-CCCHHH----CCC---CCCEEEEEEECCCCCCCCEEC-HHHHHHH
T ss_conf             8999899999899999999961334--5645984-153540----477---775688886046457865034-9999887


Q ss_pred             HHHCCCCEEEEE
Q ss_conf             974158869983
Q gi|254780711|r  179 ARDGGYDAVILD  190 (461)
Q Consensus       179 a~~~~~D~iiiD  190 (461)
                      +-..+-|.|+|-
T Consensus        96 aLR~~pd~iivG  107 (186)
T cd01130          96 ALRMRPDRIIVG  107 (186)
T ss_pred             HCCCCCCEEECC
T ss_conf             366899737317


No 429
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=95.53  E-value=0.037  Score=36.68  Aligned_cols=49  Identities=24%  Similarity=0.329  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--HHHCCCCE
Q ss_conf             9999999987187742100025884189962344333468899999999--86148950
Q gi|254780711|r   76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHL--KTLKKKKI  132 (461)
Q Consensus        76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~--~~~~~~kV  132 (461)
                      .-|.++|...+.+.        .+..+.++.|+.|+|||||+--||..+  .-.+++.+
T Consensus        29 ~eV~~WL~~~~~~~--------~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP   79 (490)
T pfam03215        29 AEVDHWLKAVFLES--------NKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNP   79 (490)
T ss_pred             HHHHHHHHHHHCCC--------CCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCC
T ss_conf             99999999985477--------7731899879899889999999999759689981486


No 430
>cd04157 Arl6 Arl6 subfamily.  Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases.  Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development.  Arl6 is also believed to have a role in cilia or flagella function.  Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p.  Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation.  At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism.  Older literature suggests that A
Probab=95.53  E-value=0.022  Score=38.45  Aligned_cols=79  Identities=22%  Similarity=0.321  Sum_probs=43.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
                      |+|+|+.||||||-+.+|.    ....+ ..-+                .-.+|+.+..                 ...+
T Consensus         2 Il~lGl~~sGKTtil~~l~----~~~~~-~~~~----------------~pT~G~~~~~-----------------~~~~   43 (162)
T cd04157           2 ILVVGLDNSGKTTIINQLK----PENAQ-SQII----------------VPTVGFNVES-----------------FEKG   43 (162)
T ss_pred             EEEECCCCCCHHHHHHHHH----CCCCC-CCCC----------------CCCCCEEEEE-----------------EEEC
T ss_conf             9999999998899999997----28987-5641----------------6850757899-----------------9839


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf             5886998334422211246899999985138511000310111
Q gi|254780711|r  183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT  225 (461)
Q Consensus       183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~  225 (461)
                      ++.+.+.||+|..... .+.   ....  -+.+-+++|+|++-
T Consensus        44 ~~~~~iwD~~G~~~~r-~lw---~~y~--~~~~~iI~VvDssd   80 (162)
T cd04157          44 NLSFTAFDMSGQGKYR-GLW---EHYY--KNIQGIIFVIDSSD   80 (162)
T ss_pred             CEEEEEEECCCCCCCC-HHH---HHHH--CCCCEEEEEEECCC
T ss_conf             9889999858874420-558---9870--56744899970763


No 431
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli.  The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane.  HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB.  This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport.  Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.53  E-value=0.14  Score=32.27  Aligned_cols=43  Identities=28%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             88418996234433346889999999986148950782054221
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR  141 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R  141 (461)
                      .+-.++.+||.+||||||-+-=|..+|.-..| .|.+-..|...
T Consensus        26 ~~G~~vaivG~sGsGKSTll~ll~gl~~p~~G-~I~i~g~di~~   68 (237)
T cd03252          26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVPENG-RVLVDGHDLAL   68 (237)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf             79999999999998599999999677657987-89999999551


No 432
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily.  This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins.  Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation.  Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state.  GDP/GTP exchange exposes the helix, which anchors to the membrane.  Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein.  A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site.  Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned.  Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI.  It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins.  Humans, but not rodents
Probab=95.52  E-value=0.021  Score=38.52  Aligned_cols=102  Identities=21%  Similarity=0.374  Sum_probs=53.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
                      .|+++|+.||||||-+-+|    +.  +...     ++                 +|..+...+            ....
T Consensus         2 KililG~~~sGKTsll~~l----~~--~~~~-----~~-----------------~pT~g~~~~------------~~~~   41 (159)
T cd04150           2 RILMVGLDAAGKTTILYKL----KL--GEIV-----TT-----------------IPTIGFNVE------------TVEY   41 (159)
T ss_pred             EEEEECCCCCCHHHHHHHH----HC--CCCC-----CC-----------------CCCCCCCEE------------EEEE
T ss_conf             9999999999989999999----72--9967-----75-----------------896870179------------9998


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCHHCCHHHHHHH-HHHHHHCC---CCC----EEEEECC
Q ss_conf             158869983344222112468999-9998513851100031011122568888-98876358---440----7764115
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEI-SEIKSLTNPHEILLVADALTGQDAVHLA-RNFDKIVD---LTG----IILTRMD  251 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~~~p~e~~lV~da~~Gq~a~~~a-~~F~~~~~---i~g----iIlTKlD  251 (461)
                      +++.+.+-||+|.....     .+ ..+.+  +.+-+++|+|++--+ .+..+ +.|++.+.   +.+    ++..|.|
T Consensus        42 ~~~~l~iwD~~G~~~~r-----~l~~~Y~~--~a~~iI~VvD~sd~~-~~~~~~~~l~~~l~~~~~~~~pili~~NK~D  112 (159)
T cd04150          42 KNISFTVWDVGGQDKIR-----PLWRHYFQ--NTQGLIFVVDSNDRE-RIGEAREELQRMLNEDELRDAVLLVFANKQD  112 (159)
T ss_pred             CCEEEEEEECCCCCCCC-----HHHHHHCC--CCCEEEEEEECCCHH-HHHHHHHHHHHHHCCHHHCCCEEEEEEECCC
T ss_conf             98999999789972146-----56786476--873899999777778-9999999999996235336982999997566


No 433
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains.  The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence.  This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.50  E-value=0.013  Score=40.11  Aligned_cols=30  Identities=33%  Similarity=0.679  Sum_probs=20.9

Q ss_pred             CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             210002588418996234433346889999999
Q gi|254780711|r   91 IELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYH  123 (461)
Q Consensus        91 ~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~  123 (461)
                      ..+.+..+   +..++|+|||||||.+.-++..
T Consensus        16 ~~i~f~~~---itaivG~NGaGKSTLl~~i~~~   45 (204)
T cd03240          16 SEIEFFSP---LTLIVGQNGAGKTTIIEALKYA   45 (204)
T ss_pred             CEEEEECC---EEEEECCCCCCHHHHHHHHHHC
T ss_conf             35885088---8999989999999999998630


No 434
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE).  The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE).  The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis.  The molecular mechanism of nickel uptake in many bacteria and most archaea is not known.  Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides.  The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.50  E-value=0.038  Score=36.62  Aligned_cols=62  Identities=24%  Similarity=0.269  Sum_probs=39.9

Q ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             0025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r   94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV  157 (461)
Q Consensus        94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v  157 (461)
                      .+.-.+-.++.++|++||||||.+-=++..+....| .|.+-.-|...... .+++.+.+.++.
T Consensus        25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~i~~~~~-~~~~~~~~~ig~   86 (228)
T cd03257          25 SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG-SIIFDGKDLLKLSR-RLRKIRRKEIQM   86 (228)
T ss_pred             EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCH-HHHHHHCCCEEE
T ss_conf             789869989999999998699999999728987886-69989964677999-999972463799


No 435
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.50  E-value=0.19  Score=31.32  Aligned_cols=90  Identities=19%  Similarity=0.162  Sum_probs=46.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH-HHHHHCCCCC----CCCCCC-CCHH------
Q ss_conf             189962344333468899999999861489507820542210047799-9985103474----222332-1036------
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL-RYLGEQIQVD----TLEVIP-EQSP------  168 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL-~~~a~~~~v~----~~~~~~-~~dp------  168 (461)
                      .-.++|-++|+|||..+++.+..+..    +|++++   .|..-.+|- +.+....+.+    .++... +..+      
T Consensus        56 ~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv---~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~va  128 (442)
T COG1061          56 RRGVIVLPTGAGKTVVAAEAIAELKR----STLVLV---PTKELLDQWAEALKKFLLLNDEIGIYGGGEKELEPAKVTVA  128 (442)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHCC----CEEEEE---CCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCEEEE
T ss_conf             86799967999889999999998269----889997---82999999999999734886766033687233577748999


Q ss_pred             --HHHHHH-HHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             --899999-99999741588699833442221
Q gi|254780711|r  169 --EKIAIR-ATQSARDGGYDAVILDTAGRNHI  197 (461)
Q Consensus       169 --~~i~~~-a~~~a~~~~~D~iiiDTaGR~~~  197 (461)
                        ..+.++ .+..+..+.+++||+|=+-++..
T Consensus       129 t~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a  160 (442)
T COG1061         129 TVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA  160 (442)
T ss_pred             EEHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf             83897641555540356667599975245784


No 436
>cd01889 SelB_euk SelB subfamily.  SelB is an elongation factor needed for the co-translational incorporation of selenocysteine.  Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin.  In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu).  It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner.  This allows insertion of selenocysteine at in-frame UGA stop codons.  In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence).  The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation.  Archaeal and animal mechanisms of selenocysteine incorporation are more complex.  Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=95.49  E-value=0.028  Score=37.58  Aligned_cols=125  Identities=22%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
                      |.++|==..||||.+..|....    +.    .+.|..   ..|+=+-..-.++...|..... +..    ........+
T Consensus         3 V~iiGHVDhGKTTL~~~L~~~~----~~----~~~D~~---~eE~eRGITi~~g~~~~~~~~~-~~~----~~~~~~~~~   66 (192)
T cd01889           3 VGVLGHVDSGKTSLAKALSEIA----ST----AAFDKN---PQSQERGITLDLGFSSFYVDKP-KHL----RELINPGEE   66 (192)
T ss_pred             EEEEEECCCCHHHHHHHHHHHC----CC----HHHHCC---HHHHHCCCCEEEEEEEEEECCC-CCC----CCCCCCCCC
T ss_conf             9999761789999999998333----50----122135---8899779716710013785144-221----123234677


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---H--HHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             58869983344222112468999999851385110003101112---2--5688889887635844077641157
Q gi|254780711|r  183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---Q--DAVHLARNFDKIVDLTGIILTRMDG  252 (461)
Q Consensus       183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q--~a~~~a~~F~~~~~i~giIlTKlD~  252 (461)
                      .+-+-+|||+|-    .+...++..  .+...|-.+||+||.-|   |  +....|+.+.  +++ =++++|+|-
T Consensus        67 ~~~i~~IDtPGH----~df~~~~~~--g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~--~~~-iv~iNK~D~  132 (192)
T cd01889          67 NLQITLVDCPGH----ASLIRTIIG--GAQIIDLMLLVVDATKGIQTQTAECLVIGEILC--KKL-IVVLNKIDL  132 (192)
T ss_pred             CEEEEEEECCCC----HHHHHHHHH--HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEECCCC
T ss_conf             458999877983----889988888--874326527999878888789999999999858--997-999974127


No 437
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.49  E-value=0.28  Score=29.95  Aligned_cols=30  Identities=20%  Similarity=0.164  Sum_probs=26.1

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             588418996234433346889999999986
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKT  126 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~  126 (461)
                      .+-|+-++|.|+.|+||+|++-.+|..+-.
T Consensus        16 ~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc   45 (290)
T PRK05917         16 QKVPSAILLHGQDLSNLSQYAYELASLILL   45 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             996606876899986599999999999857


No 438
>cd04154 Arl2 Arl2 subfamily.  Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity.  Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix.  The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI.  Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different.  In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport.  In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.47  E-value=0.026  Score=37.79  Aligned_cols=135  Identities=20%  Similarity=0.333  Sum_probs=64.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      +-..|+++|+.||||||-+-+|.      +.. +     +.+-|           .+|..+..                 
T Consensus        13 ~~~KililG~~~sGKTsll~~l~------~~~-~-----~~~~p-----------T~G~~~~~-----------------   52 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLL------GED-I-----DTISP-----------TLGFQIKT-----------------   52 (173)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHC------CCC-C-----CCCCC-----------CCCEEEEE-----------------
T ss_conf             73189999899978899999983------999-8-----97267-----------05777899-----------------


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHHHHC------CCC-CEEEEE
Q ss_conf             974158869983344222112468999-99985138511000310111225688889-887635------844-077641
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEI-SEIKSLTNPHEILLVADALTGQDAVHLAR-NFDKIV------DLT-GIILTR  249 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~~~~------~i~-giIlTK  249 (461)
                      ...+++.+.+-||||+-..     ..+ ..+.+  +.+-+++|+|++-. +.+..++ .+++.+      ++- =++.+|
T Consensus        53 ~~~~~~~l~iwD~~G~e~~-----~~~~~~y~~--~a~~ii~VvD~td~-~~~~~~~~~l~~ll~~~~~~~~pili~~NK  124 (173)
T cd04154          53 LEYEGYKLNIWDVGGQKTL-----RPYWRNYFE--STDALIWVVDSSDR-LRLDDCKRELKELLQEERLAGATLLILANK  124 (173)
T ss_pred             EEECCEEEEEEECCCCCCC-----CHHHHHHHC--CCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             9989999999966886020-----058999722--66538999855657-889999999999986354159847999876


Q ss_pred             CCCCCC-C----CHHHHHHHHHCCCHHH--EE--CCCCCCC
Q ss_conf             157663-3----0367778884787302--61--5867232
Q gi|254780711|r  250 MDGDGR-G----GAALSMRTVTGKPIKA--IG--TGEKIND  281 (461)
Q Consensus       250 lD~~ak-g----G~als~~~~~~~PI~f--ig--~GE~~~d  281 (461)
                      .|-... -    -..+........|+.|  ++  |||.+++
T Consensus       125 ~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~gI~e  165 (173)
T cd04154         125 QDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ  165 (173)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
T ss_conf             56777889999999986874457982999988966929899


No 439
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.46  E-value=0.29  Score=29.90  Aligned_cols=107  Identities=21%  Similarity=0.244  Sum_probs=58.3

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC----------CC---CCHHHHHHHHHHHCCC-------CC
Q ss_conf             8418996234433346889999999986148950782054----------22---1004779999851034-------74
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD----------VH---RPAAQEQLRYLGEQIQ-------VD  158 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D----------t~---R~aA~eQL~~~a~~~~-------v~  158 (461)
                      +-.+++||||.|+|||.-.--+|.-+-+ +-.++.|...-          ||   =||-+=|--.-|...|       |+
T Consensus       349 kGpILcLVGPPGVGKTSLgkSIA~al~R-kfvR~sLGGvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~LLDEID  427 (782)
T COG0466         349 KGPILCLVGPPGVGKTSLGKSIAKALGR-KFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEID  427 (782)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHH
T ss_conf             8857999789988701189999999589-779995476542777535531233568728999999867768747864033


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH---------HCCCC---EEEEECCCCCC-CHHHHHHHHH
Q ss_conf             2223321036899999999997---------41588---69983344222-1124689999
Q gi|254780711|r  159 TLEVIPEQSPEKIAIRATQSAR---------DGGYD---AVILDTAGRNH-INDSLMQEIS  206 (461)
Q Consensus       159 ~~~~~~~~dp~~i~~~a~~~a~---------~~~~D---~iiiDTaGR~~-~d~~lm~El~  206 (461)
                      -.++..-.||++..-+-++.-.         +-.||   |.+|-||-.+. +-..|++.|+
T Consensus       428 Km~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRME  488 (782)
T COG0466         428 KMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRME  488 (782)
T ss_pred             HCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEECCCCCCCCHHHHCCEE
T ss_conf             3167777886888886269765676122201676644325888603751329867843030


No 440
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.46  E-value=0.02  Score=38.75  Aligned_cols=53  Identities=21%  Similarity=0.319  Sum_probs=38.1

Q ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-HHHHHHHHHCCCCCC
Q ss_conf             2588418996234433346889999999986148950782054221004-779999851034742
Q gi|254780711|r   96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA-QEQLRYLGEQIQVDT  159 (461)
Q Consensus        96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA-~eQL~~~a~~~~v~~  159 (461)
                      .+..|++|++.|+-||||||-...||..+    +.  -++-+|.|-|.+ ++.+.     .|+|.
T Consensus         4 ~~~~~~iiVVMGVsGsGKSTig~~LA~~l----~~--~fiegDdfHp~~Ni~KM~-----~GiPL   57 (177)
T PRK11545          4 TNHDHHIYVLMGVSGSGKSAVASAVAHQL----HA--AFLDGDFLHPRCNIEKMA-----SGEPL   57 (177)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHH----CC--CEECCCCCCCHHHHHHHH-----CCCCC
T ss_conf             67887599998479899999999999981----99--855365558999999862-----89999


No 441
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.44  E-value=0.052  Score=35.54  Aligned_cols=41  Identities=24%  Similarity=0.340  Sum_probs=30.1

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             841899623443334688999999998614895078205422
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      .-.++.++|+|||||||.+-=++..++...|. +.+-..|..
T Consensus        26 ~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~~G~-I~~~g~~i~   66 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLT   66 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-EEECCEECC
T ss_conf             99799998899998999999996467798887-789999999


No 442
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487   ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent  molecular chaperone and is the regulatory subunit of the ClpXP protease .   ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates .    The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA .  ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=95.42  E-value=0.01  Score=40.92  Aligned_cols=240  Identities=25%  Similarity=0.341  Sum_probs=129.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
                      +-|+||||+|||||--+-=||+.+    +-+.+++=|-|           +       .-+.|-|.|.-.|..+=++.| 
T Consensus       153 SNILLiGPTGSGKTLLAqTLA~~L----~VPfAiADATt-----------L-------TEAGYVGEDVENIL~~Llq~a-  209 (452)
T TIGR00382       153 SNILLIGPTGSGKTLLAQTLARIL----NVPFAIADATT-----------L-------TEAGYVGEDVENILLKLLQAA-  209 (452)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHC----CCCEEECCHHH-----------H-------HCCCCCCCCHHHHHHHHHHHC-
T ss_conf             662454688852689999999873----88742111110-----------2-------006642422889999998741-


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCC-HHCC-HHHH-HHHHHHHHHCCC-CC-----EEEEEC
Q ss_conf             415886998334422211246899999985138-511000310-1112-2568-888988763584-40-----776411
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTN-PHEILLVAD-ALTG-QDAV-HLARNFDKIVDL-TG-----IILTRM  250 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~-p~e~~lV~d-a~~G-q~a~-~~a~~F~~~~~i-~g-----iIlTKl  250 (461)
                        .|||   .-|+|--+-   ++|+-+|.+... |.   ..=| |-=| |+|+ ...+-==-.||= +|     ==+-++
T Consensus       210 --d~DV---~kA~kGIiY---IDEIDKIaRkSEN~S---ITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~~~iqi  278 (452)
T TIGR00382       210 --DYDV---EKAQKGIIY---IDEIDKIARKSENPS---ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQEFIQI  278 (452)
T ss_pred             --CCCH---HHHCCCEEE---EECCCCHHHHCCCCE---EEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEE
T ss_conf             --4552---452785089---842231012157780---11221755499999987603234317544886886576886


Q ss_pred             CCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             57663303677788847873026158672321001368899877-35862788999874211267899888653104637
Q gi|254780711|r  251 DGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRI-LGMGDVVSLVEKAARNLNEKQAALTAKKIAKGKFD  329 (461)
Q Consensus       251 D~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~ri-LGmgD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~  329 (461)
                      |.               .-|.|||-| ..+-||.-=-.|+...- +|++-...      ....++....+-     -+-.
T Consensus       279 DT---------------s~ILFICGG-AF~GL~~iI~~R~~~~~~iGF~~~~~------~~~~~~~~~~~L-----~~v~  331 (452)
T TIGR00382       279 DT---------------SNILFICGG-AFVGLEKIIKKRTEKKSSIGFGAEVK------KKSKEKSEEELL-----RQVE  331 (452)
T ss_pred             CC---------------CCEEEEECC-HHHHHHHHHHHHHCCCCCCCCCCCHH------HHHHHHHHHHHH-----HHHC
T ss_conf             47---------------640011054-34448999988745553335455210------045787899999-----7517


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHCCCCCC
Q ss_conf             99999999998511488999998731344234323111678888899999745898786084113357899972326679
Q gi|254780711|r  330 LEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTN  409 (461)
Q Consensus       330 l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~RIA~GSG~~  409 (461)
                      .+|+       -|-|-+=-+.+=||=++.+      ...++.-|-.+.           ..|+                 
T Consensus       332 ~~DL-------~kFGLIPEfIGRLPV~a~L------~~L~~eAL~~IL-----------~~Pk-----------------  370 (452)
T TIGR00382       332 PEDL-------VKFGLIPEFIGRLPVIATL------EKLDEEALIAIL-----------TKPK-----------------  370 (452)
T ss_pred             HHHH-------HHHCCCCCCCCCCCCEECC------CCCCHHHHHHHH-----------HCCC-----------------
T ss_conf             1112-------2105551011053402027------878878999985-----------2544-----------------


Q ss_pred             HHHHHHHHHHHHHHHHH---------------H-HHHCCCCCCCHHHHHHHHH
Q ss_conf             89999999999999999---------------9-9860688620179998742
Q gi|254780711|r  410 AAKINKLLKLHRQVAEM---------------M-HSTQGLGGNALTQQIMGRL  446 (461)
Q Consensus       410 v~eVn~Llk~f~~m~km---------------m-k~~~~~~~~~~~~~~~g~~  446 (461)
                          |.|+|||++|=+|               . +.+.++.|.+.++.+.-.+
T Consensus       371 ----NAlvKQY~~lf~ld~VeL~F~~eAl~~IA~~A~~RkTGARGLRsI~E~~  419 (452)
T TIGR00382       371 ----NALVKQYQALFKLDNVELEFEEEALKAIAKKALERKTGARGLRSIVEGL  419 (452)
T ss_pred             ----HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             ----4488999997164561134558889999999985076751578999999


No 443
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.41  E-value=0.19  Score=31.30  Aligned_cols=97  Identities=20%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHH-HHHHHCC-CCCCCCCCCCCHHHHHHHH
Q ss_conf             8841899623443334688999999998614895-07820542210047799-9985103-4742223321036899999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQL-RYLGEQI-QVDTLEVIPEQSPEKIAIR  174 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL-~~~a~~~-~v~~~~~~~~~dp~~i~~~  174 (461)
                      ..|.-+++.|+.|+|||+|+-.++..++..-... +.-|.|-.++  -..|. ..++..+ ++|..+... .+-....++
T Consensus        40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~--t~~~i~~~i~~~~~~~p~~g~~~-~~~~~~l~~  116 (366)
T COG1474          40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELR--TPYQVLSKILNKLGKVPLTGDSS-LEILKRLYD  116 (366)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECC--CHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHH
T ss_conf             998607998899987328999999999733156757999513078--78799999999826899767632-689999999


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf             9999974158869983344222112
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHIND  199 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~d~  199 (461)
                      .+..  ....=+|+.|-.-.+....
T Consensus       117 ~~~~--~~~~~IvvLDEid~L~~~~  139 (366)
T COG1474         117 NLSK--KGKTVIVILDEVDALVDKD  139 (366)
T ss_pred             HHHH--CCCEEEEEECCHHHHHCCC
T ss_conf             7774--1875999976476541546


No 444
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.41  E-value=0.0063  Score=42.52  Aligned_cols=93  Identities=28%  Similarity=0.390  Sum_probs=51.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHH------------HHHHHCCCCCCCCCCCCCH
Q ss_conf             18996234433346889999999986148-9507820542210047799------------9985103474222332103
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKILMASLDVHRPAAQEQL------------RYLGEQIQVDTLEVIPEQS  167 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~lv~~Dt~R~aA~eQL------------~~~a~~~~v~~~~~~~~~d  167 (461)
                      ...|++=-+|+|||-|+.-|.+.|.+.++ ++|++.+ |  |.+=.+|-            +++++..++--.......+
T Consensus       437 rraLl~MATGTGKTrtaial~~rLlk~~~~kRILFLv-D--R~~L~~QA~~~F~~~~~~~~~~~~~~~~v~~l~~~~~~~  513 (1126)
T PRK11448        437 REILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLV-D--RRALGEQALDAFKDTKIEGNQTFASIYDIKGLTDKFPED  513 (1126)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC-C--HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf             5468872488858989999999999658767257985-6--589999999987543454566640022001025678787


Q ss_pred             HHHHHH---HH----HHH------HHHCCCCEEEEECCCCCC
Q ss_conf             689999---99----999------974158869983344222
Q gi|254780711|r  168 PEKIAI---RA----TQS------ARDGGYDAVILDTAGRNH  196 (461)
Q Consensus       168 p~~i~~---~a----~~~------a~~~~~D~iiiDTaGR~~  196 (461)
                      -..|..   .+    +.+      +--..||+||||-|-|..
T Consensus       514 ~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy  555 (1126)
T PRK11448        514 ETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGY  555 (1126)
T ss_pred             CCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf             771999730789987523576779999851379897787887


No 445
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=95.40  E-value=0.0045  Score=43.69  Aligned_cols=81  Identities=17%  Similarity=0.201  Sum_probs=49.1

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC-----------CCCCCCC-----
Q ss_conf             418996234433346889999999986148950782054221004779999851034-----------7422233-----
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ-----------VDTLEVI-----  163 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~-----------v~~~~~~-----  163 (461)
                      ...+| .|++|||||=|+|.+=+.+    +++.+|+|          +=||+|.|+=           |++|-++     
T Consensus        30 ~~QtL-LGvTGsGKTFT~AnVIa~~----~rPTLV~a----------HNKTLAAQLY~EfKefFPeNAVEYFvSYYDYYQ   94 (667)
T TIGR00631        30 KEQTL-LGVTGSGKTFTMANVIAQV----QRPTLVLA----------HNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQ   94 (667)
T ss_pred             CCEEE-EEEECCCHHHHHHHHHHHH----CCCEEEEC----------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf             71478-5321486278898999984----79849985----------777679999999986386772452552032378


Q ss_pred             -----------CCCH-----HHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             -----------2103-----6899999999997415886998334422
Q gi|254780711|r  164 -----------PEQS-----PEKIAIRATQSARDGGYDAVILDTAGRN  195 (461)
Q Consensus       164 -----------~~~d-----p~~i~~~a~~~a~~~~~D~iiiDTaGR~  195 (461)
                                 -++|     -.+-.+.+--.+-.+.-|||+|=|--|-
T Consensus        95 PEAYvP~~DtyIEKdaSINdeIerlR~SAT~SLl~RrDVIVVASVScI  142 (667)
T TIGR00631        95 PEAYVPSKDTYIEKDASINDEIERLRLSATKSLLERRDVIVVASVSCI  142 (667)
T ss_pred             CCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf             732147988413045530046767788988864237878999875520


No 446
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.39  E-value=0.07  Score=34.59  Aligned_cols=46  Identities=17%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             1000258841899623443334688999999998614895078205422
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      .+...++  .++.++|+|||||||++-=|+-.+.-..| +|.+-..|..
T Consensus        20 sl~v~~G--Ei~~liG~nGaGKSTll~~l~G~~~p~~G-~I~~~G~~~~   65 (182)
T cd03215          20 SFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPPASG-EITLDGKPVT   65 (182)
T ss_pred             EEEECCC--CEEEEECCCCCCCCHHHHHHCCCCCCCCC-EEEECCEECC
T ss_conf             7898599--69999888999926377876698678877-5999999988


No 447
>PRK10037 cell division protein; Provisional
Probab=95.38  E-value=0.03  Score=37.43  Aligned_cols=39  Identities=26%  Similarity=0.422  Sum_probs=32.9

Q ss_pred             EEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             189962344-3334688999999998614895078205422
Q gi|254780711|r  101 LVIMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus       101 ~vIllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      .+|.++|+. |+||||.+|-||.-+.+ .|++|++|-+|..
T Consensus         2 ~iial~s~kGGVGkTTltAnLA~aL~~-~g~~VlaID~dpq   41 (250)
T PRK10037          2 AILGLQGVRGGVGTTSITAALAWSLQM-LGENVLVIDACPD   41 (250)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCHH
T ss_conf             379996078887689999999999997-7991899957825


No 448
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.37  E-value=0.039  Score=36.47  Aligned_cols=217  Identities=18%  Similarity=0.163  Sum_probs=102.2

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-------------CCHH---HHHHHHHHHCCCCCCCCC
Q ss_conf             841899623443334688999999998614895078205422-------------1004---779999851034742223
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH-------------RPAA---QEQLRYLGEQIQVDTLEV  162 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~-------------R~aA---~eQL~~~a~~~~v~~~~~  162 (461)
                      +--++.++|+|||||||.+-=|+..++-..| +|.+...|..             ....   +.+++.+.+++|+-| ..
T Consensus        32 ~GE~v~IiG~nGsGKSTL~k~l~Gll~P~~G-~V~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~vG~vf-Q~  109 (304)
T PRK13651         32 QGEFIAIIGQTGSGKTTFIEHLNALLLPDTG-TIEWIYFDEKNKEKKKVVEDPVIKLKFRKKLKKIKEIRRRVGVVF-QF  109 (304)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEE-EC
T ss_conf             9989999879998599999999669998871-699942454345543113430221345666666898773379995-17


Q ss_pred             CC-------------------CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             32-------------------1036899999999997415886998334422211-246899999985138511000310
Q gi|254780711|r  163 IP-------------------EQSPEKIAIRATQSARDGGYDAVILDTAGRNHIN-DSLMQEISEIKSLTNPHEILLVAD  222 (461)
Q Consensus       163 ~~-------------------~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d-~~lm~El~~i~~~~~p~e~~lV~d  222 (461)
                      ..                   +-+..++..++.+..+.-+.+-=+.|   |.+.+ ..=..+.-.|..+.-.+--+|++|
T Consensus       110 p~~ql~~~tV~e~i~fg~~~~g~~~~e~~~rv~~~l~~vgL~~~~~~---~~p~~LSGGqkqRVaIA~~La~~P~iLlLD  186 (304)
T PRK13651        110 AEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLPEEFLQ---KSPFELSGGQKRRVALAGILAMEPDFLVFD  186 (304)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH---CCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             85455650599999999998499999999999999998699856751---895428999999999999884599999972


Q ss_pred             H-HCCHHHHHHH------HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCCCHHHHHH
Q ss_conf             1-1122568888------9887635844077641157663303677788847873026158672321---0013688998
Q gi|254780711|r  223 A-LTGQDAVHLA------RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENFFPDRIAN  292 (461)
Q Consensus       223 a-~~Gq~a~~~a------~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F~p~~~~~  292 (461)
                      = +.|.|...+.      +..++. +.|=+++|- |        +..+...---|.++-.|+-+.|=   |+|.-.....
T Consensus       187 EPTagLDp~~~~~i~~~l~~L~~~-G~TVI~vTH-d--------m~~v~~~adRvivl~~G~Iv~~G~p~evf~~~~~l~  256 (304)
T PRK13651        187 EPTAGLDPQGVKEILEIFDTLNKK-GKTIILVTH-D--------LDNVLEWTKRTIFFKDGKIIKDGDTYEILNDEKFLI  256 (304)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHH
T ss_conf             986658989999999999999977-999999867-8--------999999799999998998999868899867988998


Q ss_pred             HH-HCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             77-3586278899987421-1267899888653104637999999999985
Q gi|254780711|r  293 RI-LGMGDVVSLVEKAARN-LNEKQAALTAKKIAKGKFDLEDLAEQFRQTQ  341 (461)
Q Consensus       293 ri-LGmgD~~~l~e~~~~~-~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~  341 (461)
                      ++ |...-+..|.++..+. ++          + ..-+|.+++.+++.+..
T Consensus       257 ~~~l~~P~~~~l~~~L~~~g~~----------~-~~~~t~~e~~~~~~~~~  296 (304)
T PRK13651        257 ENKMLPPKLLNFVNKLIKKGIP----------I-SKVTSIDELASEINMYL  296 (304)
T ss_pred             HCCCCCCHHHHHHHHHHHCCCC----------C-CCCCCHHHHHHHHHHHH
T ss_conf             7799998199999999976999----------9-98688999999999999


No 449
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain.  They export degradative enzymes by using a type I protein secretion system and  lack an N-terminal signal peptide, but contain a C-terminal secretion signal.  The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP).  For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli.  The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior.  HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels.  The spectrum of transport substra
Probab=95.36  E-value=0.17  Score=31.73  Aligned_cols=46  Identities=20%  Similarity=0.354  Sum_probs=32.9

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             0002588418996234433346889999999986148950782054221
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR  141 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R  141 (461)
                      +...++  ..+.++|++||||||-+-=|+.++.-..|. |.+-..|...
T Consensus        23 l~i~~G--~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~-i~i~g~~~~~   68 (173)
T cd03246          23 FSIEPG--ESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGADISQ   68 (173)
T ss_pred             EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCC
T ss_conf             998599--999999999980999999996666679998-9999999332


No 450
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin.  In addition to DrrA, the complex includes an integral membrane protein called DrrB.  DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called  P-glycoprotein.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36  E-value=0.043  Score=36.20  Aligned_cols=48  Identities=29%  Similarity=0.360  Sum_probs=34.3

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             0002588418996234433346889999999986148950782054221
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR  141 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R  141 (461)
                      +.+.-.+-.++.++|+|||||||++-=++-.++-..| +|.+-..|..+
T Consensus        19 is~~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~G-~i~i~G~~~~~   66 (220)
T cd03265          19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG-RATVAGHDVVR   66 (220)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf             2679889839999999987199999999769788962-89999999883


No 451
>PRK07933 thymidylate kinase; Validated
Probab=95.32  E-value=0.26  Score=30.18  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=28.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             89962344333468899999999861489507820
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS  136 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~  136 (461)
                      .|.|=|+-||||||-+..|+.+|.. .|.+|.+..
T Consensus         2 ~I~fEGiDGsGKSTq~~~L~~~L~~-~g~~v~~~r   35 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALEA-AGRSVATLA   35 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEE
T ss_conf             8999889999899999999999997-799079984


No 452
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30  E-value=0.11  Score=33.13  Aligned_cols=99  Identities=21%  Similarity=0.232  Sum_probs=54.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHH----CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             189962344333468899999999861----4895078205422100477999985103474222332103689999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTL----KKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~----~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      .-.+++|+.|+||||..--+|+.+..-    -++||.+|-.-.-=+|+..-.-++..-..+++....    |-.   .++
T Consensus       138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~c----pk~---~gm  210 (308)
T COG3854         138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPC----PKA---EGM  210 (308)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCC----HHH---HHH
T ss_conf             2469965998870779999999863151126773289971500430343588603232210104656----178---889


Q ss_pred             HHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             999-7415886998334422211246899999985138
Q gi|254780711|r  177 QSA-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN  213 (461)
Q Consensus       177 ~~a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~  213 (461)
                      -.| .+-.-+|++||--||       +++...+..+++
T Consensus       211 mmaIrsm~PEViIvDEIGt-------~~d~~A~~ta~~  241 (308)
T COG3854         211 MMAIRSMSPEVIIVDEIGT-------EEDALAILTALH  241 (308)
T ss_pred             HHHHHHCCCCEEEEECCCC-------HHHHHHHHHHHH
T ss_conf             9999954995799834364-------777999999985


No 453
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.30  E-value=0.21  Score=30.85  Aligned_cols=187  Identities=23%  Similarity=0.287  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCC---CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             99999999861489507820542---210047799998510347422233210368999999999974158869983344
Q gi|254780711|r  117 TAKIAYHLKTLKKKKILMASLDV---HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAG  193 (461)
Q Consensus       117 ~aKLA~~~~~~~~~kV~lv~~Dt---~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaG  193 (461)
                      -..+|.+|...+-...-++-.|-   -|+--.+-++..++...+|+.....=.+.     +.++.+-+.++|-|+|-|+-
T Consensus        33 P~~~a~~~~~~Ga~~lhivDLd~a~~g~~~n~~~I~~i~~~~~~pi~vGGGIrs~-----~~i~~~l~~Ga~kvvigs~~  107 (240)
T PRK13585         33 PVEVAKRWVDAGAKTLHLVDLDGAFEGSRKNADIIEKIVEATDVSIQLGGGIRSV-----EDAASLLDLGVDRVILGTAA  107 (240)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCH-----HHHHHHHHCCCCEEEECCCC
T ss_conf             9999999998799979999897721189444999999997379778997885879-----99999997699899939811


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC------------CHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-C---
Q ss_conf             22211246899999985138511000310111------------2256888898876358440776411576633-0---
Q gi|254780711|r  194 RNHINDSLMQEISEIKSLTNPHEILLVADALT------------GQDAVHLARNFDKIVDLTGIILTRMDGDGRG-G---  257 (461)
Q Consensus       194 R~~~d~~lm~El~~i~~~~~p~e~~lV~da~~------------Gq~a~~~a~~F~~~~~i~giIlTKlD~~akg-G---  257 (461)
                        ..|.++++|+   .+...|.-+.+-+|..-            +.+..+.++.+.+ .++..+|+|-+|-+-.. |   
T Consensus       108 --~~~~~~~~~i---~~~~G~~~ivvsiD~k~~~v~~~gw~~~~~~~~~e~~~~~~~-~g~~eii~tdI~~dGt~~G~d~  181 (240)
T PRK13585        108 --IENPELVREL---SDEFGSERVMVSLDAKDGEVVIEGWTESTGKDPVEWAQRFEE-LGAGSILFTNVDVEGLLQGVNP  181 (240)
T ss_pred             --HHCCHHHHHH---HHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEEEEECCHHHHCCCCH
T ss_conf             --3184288999---987397217999993065023247656788635577788886-3873589864233223257898


Q ss_pred             -HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             -3677788847873026158672321001368899877358627889998742112678998886531046379999999
Q gi|254780711|r  258 -AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQ  336 (461)
Q Consensus       258 -~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Q  336 (461)
                       ..-.+...+.+||.+-|==-+++||+...-       +|.-.                 --..+-+-.|+|++.+.++-
T Consensus       182 ~~~~~i~~~~~~pviasGGv~s~~di~~l~~-------~g~~g-----------------vivG~Al~~g~i~l~e~~~~  237 (240)
T PRK13585        182 EPVRELVDSVDIPVIASGGVTSLDDVKALKE-------AGAAG-----------------VVVGSALYKGKFTLEEALEA  237 (240)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHHHHHH-------CCCCE-----------------EEEEHHHHCCCCCHHHHHHH
T ss_conf             9999999868999999889999999999997-------89978-----------------99876876799789999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780711|r  337 FR  338 (461)
Q Consensus       337 l~  338 (461)
                      ++
T Consensus       238 ~~  239 (240)
T PRK13585        238 AE  239 (240)
T ss_pred             HH
T ss_conf             64


No 454
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity.  In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins.  Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family.  The ATP-binding domain shows the highest similarity between all members of the ABC transporter family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30  E-value=0.059  Score=35.14  Aligned_cols=46  Identities=28%  Similarity=0.289  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             02588418996234433346889999999986148950782054221
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR  141 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R  141 (461)
                      +.-.+-.++.++|+|||||||.+-=|+-.++-..| .|.+-..|..+
T Consensus        21 l~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~~G-~i~i~g~~~~~   66 (173)
T cd03230          21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG-EIKVLGKDIKK   66 (173)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf             78879939999878997999999999768577878-89999999886


No 455
>cd03299 ABC_ModC_like Archeal protein closely related to ModC.  ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29  E-value=0.099  Score=33.41  Aligned_cols=189  Identities=19%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH-------H-------HHHHHHCCCC
Q ss_conf             1000258841899623443334688999999998614895078205422100477-------9-------9998510347
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE-------Q-------LRYLGEQIQV  157 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e-------Q-------L~~~a~~~~v  157 (461)
                      .+....+  .++.++|++||||||..-=+|-.++-..| .|.+-..|.......+       |       +.. .+.+..
T Consensus        19 s~~v~~G--e~~~iiGpSGsGKSTLlr~i~Gl~~p~~G-~I~~~G~di~~~~~~~r~ig~vfQ~~~Lfp~~tV-~eNi~~   94 (235)
T cd03299          19 SLEVERG--DYFVILGPTGSGKSVLLETIAGFIKPDSG-KILLNGKDITNLPPEKRDISYVPQNYALFPHMTV-YKNIAY   94 (235)
T ss_pred             EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHCCEEEECCCCCCCCCCCH-HHHHHH
T ss_conf             8798899--89999999963599999999749999965-9999999999999767897894579866899909-999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHCC--C-----CCCCCCCCHHCCHHH
Q ss_conf             42223321036899999999997415886998334422211-246899999985138--5-----110003101112256
Q gi|254780711|r  158 DTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIN-DSLMQEISEIKSLTN--P-----HEILLVADALTGQDA  229 (461)
Q Consensus       158 ~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d-~~lm~El~~i~~~~~--p-----~e~~lV~da~~Gq~a  229 (461)
                      +.  ...+.++.++..++.+.+..-+.    =+-+.|.+.+ ..=+++--.|.++.-  |     ||..=-+|..+..+.
T Consensus        95 ~l--~~~~~~~~e~~~rv~e~l~~~gl----~~~~~~~p~~LSGGq~QRVaiARAl~~~P~llllDEP~s~LD~~~~~~i  168 (235)
T cd03299          95 GL--KKRKVDKKEIERKVLEIAEMLGI----DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL  168 (235)
T ss_pred             HH--HHCCCCHHHHHHHHHHHHHHCCC----HHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf             99--87699999999999999987799----7787489445899999999999999738998999288764699999999


Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCCC--HHHHHHHHHCCCC
Q ss_conf             88889887635844077641157663303677788847873026158672321---0013--6889987735862
Q gi|254780711|r  230 VHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENFF--PDRIANRILGMGD  299 (461)
Q Consensus       230 ~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F~--p~~~~~riLGmgD  299 (461)
                      .+..+..++..++|-+++|-=     --.|+.+    .--|.++-.|+-+..=   |.|+  .+.++.++||.-+
T Consensus       169 ~~~l~~l~~~~~~T~i~vTHd-----~~~a~~~----aDri~vl~~G~iv~~G~p~ev~~~P~~~~~a~flG~~n  234 (235)
T cd03299         169 REELKKIRKEFGVTVLHVTHD-----FEEAWAL----ADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLGFNN  234 (235)
T ss_pred             HHHHHHHHHHHCCEEEEECCC-----HHHHHHH----CCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHCCCCC
T ss_conf             999999999829999998789-----9999996----99999998999999868899985899879998458132


No 456
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=95.29  E-value=0.069  Score=34.61  Aligned_cols=114  Identities=18%  Similarity=0.236  Sum_probs=57.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHH-CCC-CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             189962344333468899999999861-489-507820542210047799998510347422233210368999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTL-KKK-KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~-~~~-kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
                      .|+++-|..|+|||--.-.|.+.+... .+. .+.+..-..++---.++|   +...+...-.  .-.-|.... +.+. 
T Consensus         2 ~v~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l---~~~~~~~~~~--~~~~~~~fi-~~~~-   74 (348)
T pfam09848         2 AVFLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEAL---AGDLKVRKKK--LFRKPTSFI-NNLH-   74 (348)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHH---HHHCCHHHCC--CCCCCHHHH-CCCC-
T ss_conf             79999777993899999999999864402682089957866999999998---6041200102--000725231-6523-


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHH------HHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             97415886998334422211246------8999999851385110003101
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSL------MQEISEIKSLTNPHEILLVADA  223 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~l------m~El~~i~~~~~p~e~~lV~da  223 (461)
                      .....+||||+|-|=|+......      -.+|..|.+..+  -+++++|.
T Consensus        75 ~~~~~~dvvivDEAhRl~~k~~~~~~~~~~~ql~~i~~~a~--v~V~~~D~  123 (348)
T pfam09848        75 KAPPHEDVVIVDEAHRLWTKSDLYFNFSGPNQLDEIMKRAK--VVVFFIDE  123 (348)
T ss_pred             CCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--EEEEEECC
T ss_conf             57986778998317866543365567785799999997528--59999879


No 457
>PTZ00110 helicase; Provisional
Probab=95.28  E-value=0.25  Score=30.33  Aligned_cols=129  Identities=20%  Similarity=0.214  Sum_probs=68.7

Q ss_pred             EEEECCCCCCHHHH-----HHHHHHH-HHHHCCCCEEEECCCCCCCHHH--HHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             99623443334688-----9999999-9861489507820542210047--79999851034742223321036899999
Q gi|254780711|r  103 IMLVGLQGSGKTTT-----TAKIAYH-LKTLKKKKILMASLDVHRPAAQ--EQLRYLGEQIQVDTLEVIPEQSPEKIAIR  174 (461)
Q Consensus       103 IllvGl~GsGKTTT-----~aKLA~~-~~~~~~~kV~lv~~Dt~R~aA~--eQL~~~a~~~~v~~~~~~~~~dp~~i~~~  174 (461)
                      ++-+-.+|||||-.     +.++... ..+.+....+||-+-|.--|-.  ++++.++...++.+.....|.+ ..--..
T Consensus       222 vIgiAqTGSGKTLAFlLP~l~hi~~q~~~~~~~gP~aLILaPTRELA~QI~~e~~~~~~~~~ir~~~i~GG~~-~~~Q~~  300 (602)
T PTZ00110        222 MIGIAETGSGKTLAFLLPAIVHINAQPLLRPGDGPIVLVLAPTRELAEQIREQALQFGRSSKLKNSVAYGGVP-KRFQTY  300 (602)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHH
T ss_conf             7998789788999999999999851634367899769997383999999999999971547854999979968-799999


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCC------------------------HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHH
Q ss_conf             99999741588699833442221------------------------124689999998513851100031011122568
Q gi|254780711|r  175 ATQSARDGGYDAVILDTAGRNHI------------------------NDSLMQEISEIKSLTNPHEILLVADALTGQDAV  230 (461)
Q Consensus       175 a~~~a~~~~~D~iiiDTaGR~~~------------------------d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~  230 (461)
                          ...++.| |+|-|+||+-.                        |.....++.+|...+.|+--.+...||.-.+..
T Consensus       301 ----~L~~G~d-IvVATPGRLiDlL~~~~~~L~~v~yLVLDEADRMLDmGFe~qI~~Il~~i~pdRQTlLFSAT~p~~V~  375 (602)
T PTZ00110        301 ----ALRRGVE-ILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQ  375 (602)
T ss_pred             ----HHCCCCC-EEEECCHHHHHHHHCCCCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHH
T ss_conf             ----8716999-99979238999996499874310289987577663546299999999858978779999558998999


Q ss_pred             HHHHHHH
Q ss_conf             8889887
Q gi|254780711|r  231 HLARNFD  237 (461)
Q Consensus       231 ~~a~~F~  237 (461)
                      ..|+.|-
T Consensus       376 ~LA~~~L  382 (602)
T PTZ00110        376 SLARDLC  382 (602)
T ss_pred             HHHHHHH
T ss_conf             9999982


No 458
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=95.28  E-value=0.076  Score=34.29  Aligned_cols=27  Identities=41%  Similarity=0.363  Sum_probs=20.1

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             841899623443334688999999998
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLK  125 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~  125 (461)
                      +-.++.++|.+||||||++--+...+.
T Consensus        28 ~Ge~~aiiG~SGsGKStl~k~llgll~   54 (254)
T PRK10418         28 RGRVLALVGGSGSGKSLTCAAALGILP   54 (254)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999998789999999957998


No 459
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462    The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=95.27  E-value=0.027  Score=37.78  Aligned_cols=166  Identities=19%  Similarity=0.275  Sum_probs=88.0

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      .+.|  |=|.||.|+||||-+--+|    ++.+|+|+++..|.       ||.+      -+.++.+.|..-.++    +
T Consensus        20 ~G~P--vHl~GPaG~GKT~LA~hvA----~~r~RPV~l~~Gd~-------eL~~------~DLvG~~~g~~~~kv----~   76 (265)
T TIGR02640        20 SGYP--VHLRGPAGTGKTTLAMHVA----RKRDRPVVLINGDA-------ELTT------SDLVGSYAGYTRKKV----V   76 (265)
T ss_pred             CCCC--EEEECCCCCCHHHHHHHHH----HHCCCCEEEEECCC-------CCCC------CCCCCCCCCCEEEEE----E
T ss_conf             7886--6744788855689999999----73689689986582-------3265------442315467522223----2


Q ss_pred             HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-------CCC----------CCCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf             99974158869983344222112468999999851-------385----------1100031011122568888988763
Q gi|254780711|r  177 QSARDGGYDAVILDTAGRNHINDSLMQEISEIKSL-------TNP----------HEILLVADALTGQDAVHLARNFDKI  239 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~-------~~p----------~e~~lV~da~~Gq~a~~~a~~F~~~  239 (461)
                      +.+.++=  +=.=|++--+-.|..|..-.++=...       .+|          .|-+|-+++.-+++.      |=+-
T Consensus        77 DqfihnV--~K~~d~~~~~W~D~rLt~Av~eG~TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~------Yv~V  148 (265)
T TIGR02640        77 DQFIHNV--VKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESR------YVDV  148 (265)
T ss_pred             ECCEEEE--ECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC------CEEE
T ss_conf             0121113--4251220026678357899756972766475788620456567555523215888787787------2257


Q ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC----CCHHHHHHHHHHHH--HH
Q ss_conf             5844077641157663303677788847873026158672321001368899877358----62788999874211--26
Q gi|254780711|r  240 VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM----GDVVSLVEKAARNL--NE  313 (461)
Q Consensus       240 ~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm----gD~~~l~e~~~~~~--d~  313 (461)
                      -|-=.+|||                  -=|.=|-|+=+.-|.        .++||.||    -|..+=++=+.+..  ++
T Consensus       149 hP~FR~IfT------------------SNp~EYAGVh~~QDA--------LlDRL~ti~~D~~D~~~e~ai~~~~t~~~~  202 (265)
T TIGR02640       149 HPEFRVIFT------------------SNPVEYAGVHETQDA--------LLDRLVTISMDYPDEDTETAILRAKTDVAE  202 (265)
T ss_pred             CCCCCEEEC------------------CCCCCCCCCCCHHHH--------HHHHHCCCCCCCCCHHHHHHHHHHHHCCCH
T ss_conf             887024631------------------487010576771667--------766440045785444789999998606124


Q ss_pred             HHHHHH
Q ss_conf             789988
Q gi|254780711|r  314 KQAALT  319 (461)
Q Consensus       314 ~~~~~l  319 (461)
                      +++..+
T Consensus       203 ~~a~~I  208 (265)
T TIGR02640       203 ESAATI  208 (265)
T ss_pred             HHHHHH
T ss_conf             678999


No 460
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.27  E-value=0.048  Score=35.80  Aligned_cols=174  Identities=18%  Similarity=0.205  Sum_probs=74.5

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH----HHHHHH
Q ss_conf             4189962344333468899999999861489507820542210047799998510347422233210368----999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPE----KIAIRA  175 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~----~i~~~a  175 (461)
                      +.++.++|+.|+||||-+-.....+..   .+ .+-..|.        .-..|++.|..-.....-+-|.    .+-..|
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~---~~-ivNyG~~--------Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~A   71 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVK---HK-IVNYGDL--------MLEIAKKKGLVEHRDEMRKLPLENQRELQAEA   71 (189)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH---CE-EEEHHHH--------HHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHH
T ss_conf             559999757988726699999987752---20-0007699--------99999983872028988529888999999999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEE-CCCC
Q ss_conf             9999741588699833442221124689999-9985138511000310111225688889887635844077641-1576
Q gi|254780711|r  176 TQSARDGGYDAVILDTAGRNHINDSLMQEIS-EIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTR-MDGD  253 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~-~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTK-lD~~  253 (461)
                      .........+ ||+||-+--.+-.....-|- .+.+.++|+-+++ +.|.----+..+.+.-...-++.+.=--+ .-.-
T Consensus        72 a~rI~~~~~~-iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivl-lEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~  149 (189)
T COG2019          72 AKRIAEMALE-IIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVL-LEADPEEILERRLRDSRRDRDVESVEEIREHQEM  149 (189)
T ss_pred             HHHHHHHHCC-EEEECCCEECCCCCCCCCCCHHHHHHCCCCEEEE-EECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             9999974206-5873241114787667788399997529887999-9379899999872261204662108999999999


Q ss_pred             CCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             633036777888478730261586723210013688998773
Q gi|254780711|r  254 GRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL  295 (461)
Q Consensus       254 akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL  295 (461)
                      +| -+|......+|.+++-+-+-       .++|+.-++-|+
T Consensus       150 nR-~aA~a~A~~~gatVkIV~n~-------~~~~e~Aa~eiv  183 (189)
T COG2019         150 NR-AAAMAYAILLGATVKIVENH-------EGDPEEAAEEIV  183 (189)
T ss_pred             HH-HHHHHHHHHHCCEEEEEECC-------CCCHHHHHHHHH
T ss_conf             99-99999999708848997478-------888788899999


No 461
>KOG1051 consensus
Probab=95.25  E-value=0.33  Score=29.42  Aligned_cols=119  Identities=13%  Similarity=0.214  Sum_probs=68.2

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHH
Q ss_conf             88418996234433346889999999986148950782054221004779999851034742-22332103689999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-LEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-~~~~~~~dp~~i~~~a~  176 (461)
                      +++.-+||+||.|+|||--+-.||.++-  +. ...+|..|--   .+.+   .++-++-|- |..+.+.+   -..   
T Consensus       589 ~~~awflflGpdgvGKt~lAkaLA~~~F--gs-e~~~IriDms---e~~e---vskligsp~gyvG~e~gg---~Lt---  653 (898)
T KOG1051         589 NPDAWFLFLGPDGVGKTELAKALAEYVF--GS-EENFIRLDMS---EFQE---VSKLIGSPPGYVGKEEGG---QLT---  653 (898)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHC--CC-CCCEEEECHH---HHHH---HHHCCCCCCCCCCCHHHH---HHH---
T ss_conf             8885899978884138999999999972--88-6426896145---5555---653048995554630577---888---


Q ss_pred             HHHHHCCCCEEEEECCCCCCCHH-HHHHHHHHHHHH-------CCCCCCCCCCCHHCCHHHHH
Q ss_conf             99974158869983344222112-468999999851-------38511000310111225688
Q gi|254780711|r  177 QSARDGGYDAVILDTAGRNHIND-SLMQEISEIKSL-------TNPHEILLVADALTGQDAVH  231 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR~~~d~-~lm~El~~i~~~-------~~p~e~~lV~da~~Gq~a~~  231 (461)
                      +..+.+-|-|||+|-----|.+- +.|.++-.=.++       +.--.+++|+-+..|++.+.
T Consensus       654 eavrrrP~sVvLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~  716 (898)
T KOG1051         654 EAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIA  716 (898)
T ss_pred             HHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCHHHHH
T ss_conf             997169965999830222288899999999862740058886750464599994263166664


No 462
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=95.25  E-value=0.034  Score=37.00  Aligned_cols=131  Identities=18%  Similarity=0.264  Sum_probs=68.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHH-----
Q ss_conf             189962344333468899999999861489507820542210047799998510347422233--2103689999-----
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI--PEQSPEKIAI-----  173 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~--~~~dp~~i~~-----  173 (461)
                      -.|.++|-=-+||||.++-|.+-+   ++  +     |.   ..+++++.-+...|-.-|...  ....+.+-.+     
T Consensus         8 lni~~~GhVD~GKSTL~G~Ll~~~---~~--v-----~~---~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid   74 (449)
T PTZ00336          8 MNLVVVGHVDAGKSTATGHLIYKC---GG--I-----DK---RTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITID   74 (449)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHC---CC--C-----CH---HHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEE
T ss_conf             399999277896888899999874---88--4-----78---99999999998718751432545127722322875898


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC----------HHHHHHHHHHHHHCCCC
Q ss_conf             99999974158869983344222112468999999851385110003101112----------25688889887635844
Q gi|254780711|r  174 RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG----------QDAVHLARNFDKIVDLT  243 (461)
Q Consensus       174 ~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G----------q~a~~~a~~F~~~~~i~  243 (461)
                      -+..++...+.-+.|||++|--.+=.++      |..+.+.|-.+||+||.-|          |---. +. ....+++.
T Consensus        75 ~~~~~f~t~~~~~~iiD~PGH~~fi~nm------i~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreH-l~-i~~~Lgv~  146 (449)
T PTZ00336         75 IALWKFESPKSVFTIIDAPGHRDFIKNM------ITGTSQADAAILMIDSTHGGFEAGISKDGQTREH-AL-LAFTLGVK  146 (449)
T ss_pred             EEEEEEECCCEEEEEEECCCHHHHHHHH------HHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHH-HH-HHHHCCCC
T ss_conf             6799997498489998689468889999------9765006767999987877410355667753999-99-99866997


Q ss_pred             CEE--EEECCC
Q ss_conf             077--641157
Q gi|254780711|r  244 GII--LTRMDG  252 (461)
Q Consensus       244 giI--lTKlD~  252 (461)
                      .+|  ++|+|.
T Consensus       147 ~iiV~vNKmD~  157 (449)
T PTZ00336        147 QMVVCCNKMDD  157 (449)
T ss_pred             EEEEEEECCCC
T ss_conf             79999862015


No 463
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=95.25  E-value=0.12  Score=32.69  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=16.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             189962344333468899999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHL  124 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~  124 (461)
                      .|.-++|.||.||||++-=||-.+
T Consensus       101 ~V~GilG~NGiGKsTalkILaGel  124 (591)
T COG1245         101 KVVGILGPNGIGKSTALKILAGEL  124 (591)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             479987689765788999974760


No 464
>PHA00729 NTP-binding motif containing protein
Probab=95.25  E-value=0.046  Score=35.96  Aligned_cols=97  Identities=23%  Similarity=0.203  Sum_probs=56.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             8841899623443334688999999998-614895078205422100477999985103474222332103689999999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLK-TLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~-~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      .+-.-++..|.||+||||-+-|.|+..- ...+   . -+    .-.|.++-..+      -||..   .|.....++++
T Consensus        15 ~GF~S~iifGkQG~GKTTYAlKV~~~v~~~l~~---~-~~----~~~aW~~~~n~------~~F~l---~~al~k~~~~~   77 (228)
T PHA00729         15 NGFVSAIIFGKQGTGKTTYALKVARDVFWKLNN---L-LT----KDDAWQYAYNS------YFFEL---PDALEKIQDAI   77 (228)
T ss_pred             CCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCC---C-CC----CCCHHHHHHHH------EEECH---HHHHHHHHHHH
T ss_conf             794699998367788420219999999999648---8-65----43369999876------14258---99999999998


Q ss_pred             HHHHHCCCCEEEEECCCCCCC----HHHHHHHHHHHHHHCC
Q ss_conf             999741588699833442221----1246899999985138
Q gi|254780711|r  177 QSARDGGYDAVILDTAGRNHI----NDSLMQEISEIKSLTN  213 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR~~~----d~~lm~El~~i~~~~~  213 (461)
                      +  .+....++|+|-||-+-.    -++-|...-++.+++.
T Consensus        78 ~--~~~RiP~ii~DDAgiwLskY~w~~~~m~~Fyk~ynliR  116 (228)
T PHA00729         78 D--NDYRIPLLIFDDAGIWLSKYVWYEDYMITFYKIYNLIR  116 (228)
T ss_pred             H--CCCCCCEEEEECCCHHHHHEEEHHHHHHHHHHHHHHHH
T ss_conf             5--37767779982452012410022877688999999999


No 465
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.24  E-value=0.17  Score=31.59  Aligned_cols=39  Identities=23%  Similarity=0.220  Sum_probs=26.4

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             4189962344333468899999999861489507820542
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV  139 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt  139 (461)
                      -.++.++|++||||||.+-=|+..+.-..| .|.+-.-|.
T Consensus        35 Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~~G-~I~~~g~~i   73 (269)
T PRK13648         35 GQWTSIVGHNGSGKSTIAKLMIGIEKVKSG-EIFYNNQAI   73 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCE-EEEECCEEC
T ss_conf             989999999999799999999649799850-999999999


No 466
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=95.23  E-value=0.043  Score=36.20  Aligned_cols=108  Identities=22%  Similarity=0.270  Sum_probs=54.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
                      |+++|-.|||||+-+-+++.-     ...      .+|.|           .++.+++.....-             ...
T Consensus         2 i~vvG~~~vGKTsli~r~~~~-----~f~------~~~~~-----------t~~~~~~~~~~~~-------------~~~   46 (162)
T pfam00071         2 LVLVGDGGVGKSSLLIRFTQN-----KFP------EEYIP-----------TIGVDFYTKTIEV-------------DGK   46 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHHC-----CCC------CCCCC-----------CCEEEEEEEEEEE-------------CCE
T ss_conf             899997997799999999619-----999------87477-----------4135567899999-------------999


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH----CCC---CCEEEEECCC
Q ss_conf             588699833442221124689999998513851100031011122568888988763----584---4077641157
Q gi|254780711|r  183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI----VDL---TGIILTRMDG  252 (461)
Q Consensus       183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~----~~i---~giIlTKlD~  252 (461)
                      .+.+.|.||+|.-.     .+.+... -.-+.|-+++|.|.+- ++.++.++.+.+.    .+-   -=+|-||.|-
T Consensus        47 ~~~~~i~Dt~G~e~-----~~~~~~~-~~~~ad~~iivfd~~~-~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl  116 (162)
T pfam00071        47 TVKLQIWDTAGQER-----FRALRPL-YYRGAQGFLLVYDITS-RDSFENVKKWLEEILRHADDNVPIVLVGNKCDL  116 (162)
T ss_pred             EEEEEEEECCCCHH-----HHHHHHH-HHCCCCCCEEECCCCC-HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
T ss_conf             99999997898720-----4678899-8625765504234898-899999999999999857988628899752474


No 467
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1.  In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD.  MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.22  E-value=0.14  Score=32.32  Aligned_cols=45  Identities=24%  Similarity=0.431  Sum_probs=30.6

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             000258841899623443334688999999998614895078205422
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      +...++  ..|.+||.+||||||-+.=|+..|.-..| +|.+=..|..
T Consensus        24 l~i~~G--~~iaIvG~sGsGKSTLl~ll~gl~~p~~G-~I~idg~~i~   68 (238)
T cd03249          24 LTIPPG--KTVALVGSSGCGKSTVVSLLERFYDPTSG-EILLDGVDIR   68 (238)
T ss_pred             EEECCC--CEEEEECCCCCCHHHHHHHHHHCCCCCCC-EEEECCEECC
T ss_conf             997699--99999999999899999998238618851-8999999923


No 468
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374    This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=95.20  E-value=0.01  Score=41.03  Aligned_cols=115  Identities=18%  Similarity=0.257  Sum_probs=59.8

Q ss_pred             CCCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC---CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             8841-89962344333468899999999861489507820542---2100477999985103474222332103689999
Q gi|254780711|r   98 PSPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV---HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAI  173 (461)
Q Consensus        98 ~~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt---~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~  173 (461)
                      .+|+ -||+.||+|||||.|+===   |--.+.-.|=+-||--   ++-.++.|-+.+=+ .|..|         +    
T Consensus       323 ~kPqGMvLVTGPTGSGKTVSLYTa---LniLN~~~~NISTAEDPVEINLpGINQVnvNpK-~GLTF---------A----  385 (577)
T TIGR02538       323 HKPQGMVLVTGPTGSGKTVSLYTA---LNILNTEEVNISTAEDPVEINLPGINQVNVNPK-IGLTF---------A----  385 (577)
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCCCCCCEEEEECCCCEECCCCC-CCCCH---------H----
T ss_conf             079972886266598416878763---112577674501144772464077151204667-88787---------9----


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CCCCCC-CCCCCHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             99999974158869983344222112468999999851---385110-00310111225688889887635844
Q gi|254780711|r  174 RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSL---TNPHEI-LLVADALTGQDAVHLARNFDKIVDLT  243 (461)
Q Consensus       174 ~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~---~~p~e~-~lV~da~~Gq~a~~~a~~F~~~~~i~  243 (461)
                      .|+..|-.+.=|+|-             .-|++.+-.+   +|--.+ +||++-.--+||-.+.-.--+ .||-
T Consensus       386 aALrSFLRQDPDIIM-------------VGEIRDLETAEIAiKAAqTGHLVlSTLHTNdAp~Tl~RL~N-MGia  445 (577)
T TIGR02538       386 AALRSFLRQDPDIIM-------------VGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVN-MGIA  445 (577)
T ss_pred             HHHHHHCCCCCCEEE-------------EECCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHH-CCCH
T ss_conf             999864068998898-------------70666421589999984048721010001685899999975-3841


No 469
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.19  E-value=0.34  Score=29.34  Aligned_cols=41  Identities=27%  Similarity=0.397  Sum_probs=26.9

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEECCC
Q ss_conf             884189962344333468899999999861489-----50782054
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKK-----KILMASLD  138 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~-----kV~lv~~D  138 (461)
                      .+-.++.++|++||||||-+-=++..+.-..|.     +++.+.-+
T Consensus        29 ~~Ge~~~IvG~sGsGKSTLl~~i~G~~~~~~G~I~~~g~i~~v~Q~   74 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQE   74 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECC
T ss_conf             6998999999999858999999818952568952258988999587


No 470
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome.  The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation.  To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes.  X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family.  The disease is characterized by a striking and unpredictable variation in phenotypic expression.  Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.18  E-value=0.12  Score=32.67  Aligned_cols=31  Identities=16%  Similarity=0.123  Sum_probs=22.2

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             8418996234433346889999999986148
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK  129 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~  129 (461)
                      +-..+.++|.+||||||-+-=|+..+.-..|
T Consensus        26 ~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G   56 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSG   56 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCCCCCCCC
T ss_conf             9999999958999889999998698769986


No 471
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.18  E-value=0.015  Score=39.57  Aligned_cols=52  Identities=25%  Similarity=0.353  Sum_probs=36.5

Q ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf             00258841899623443334688999999998614895078205422100477
Q gi|254780711|r   94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE  146 (461)
Q Consensus        94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e  146 (461)
                      .++-.+-.++.++|+|||||||-.--|+..++-..| .|.+-..|.++-...|
T Consensus        22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~~~l~p~~G-~V~l~g~~i~~~~~ke   73 (258)
T COG1120          22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG-EVLLDGKDIASLSPKE   73 (258)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCHHHCCHHH
T ss_conf             688659979999899888999999998656788887-7999997245469888


No 472
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane.  The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.17  E-value=0.096  Score=33.52  Aligned_cols=61  Identities=26%  Similarity=0.318  Sum_probs=39.5

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             00025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV  157 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v  157 (461)
                      +....+  -++.++|++||||||.+-=++...+-..| .|.+-..|+.... ..++..+-+.+|+
T Consensus        22 l~i~~G--e~v~i~GpSGsGKSTLl~~i~gl~~p~sG-~i~i~g~~~~~~~-~~~~~~~Rr~iG~   82 (214)
T cd03292          22 ISISAG--EFVFLVGPSGAGKSTLLKLIYKEELPTSG-TIRVNGQDVSDLR-GRAIPYLRRKIGV   82 (214)
T ss_pred             EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCC-HHHHHHHHCCEEE
T ss_conf             798599--89999979995399999999629898864-9999999989899-7789998667499


No 473
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.17  E-value=0.07  Score=34.58  Aligned_cols=32  Identities=28%  Similarity=0.417  Sum_probs=23.3

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             1000258841899623443334688999999998
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLK  125 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~  125 (461)
                      .|...++  -++.+||.+||||||++--|...+.
T Consensus        36 Sf~v~~G--E~vaLvGeSGSGKSTl~~~l~gll~   67 (623)
T PRK10261         36 SFSLQRG--ETLAIVGESGSGKSVTALALMRLLE   67 (623)
T ss_pred             EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             7698899--8999998999789999999977987


No 474
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.16  E-value=0.11  Score=33.08  Aligned_cols=51  Identities=25%  Similarity=0.317  Sum_probs=35.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf             8841899623443334688999999998614895078205422100477999
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR  149 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~  149 (461)
                      .+-.++.++|+||+||||..-=++-.++-..| +|.+-.-|...-...+..+
T Consensus        24 ~~Gei~~liGpNGaGKSTL~~~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~r   74 (230)
T TIGR03410        24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG-SIRLDGEDITKLPPHERAR   74 (230)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHH
T ss_conf             99979999999994099999999779999954-9999999999999899998


No 475
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16  E-value=0.19  Score=31.28  Aligned_cols=62  Identities=23%  Similarity=0.351  Sum_probs=37.2

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             100025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV  157 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v  157 (461)
                      .+...++  -++.++|++||||||++-=++..++-..| .|.+-..|...... .++..+-.+++.
T Consensus        20 sl~i~~G--e~~~iiG~SGsGKSTll~~i~gL~~p~~G-~I~~~g~~i~~~~~-~~~~~~r~~ig~   81 (235)
T cd03261          20 DLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRPDSG-EVLIDGEDISGLSE-AELYRLRRRMGM   81 (235)
T ss_pred             EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCH-HHHHHHHCCEEE
T ss_conf             6488799--89999999997299999999759998985-89999999998998-899997578299


No 476
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids.  The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis.  YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein.  Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli.  The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.14  E-value=0.016  Score=39.41  Aligned_cols=54  Identities=30%  Similarity=0.377  Sum_probs=39.7

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf             000258841899623443334688999999998614895078205422100477999
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR  149 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~  149 (461)
                      +...++  .++-++|+||+||||+.-=++-.++-..| +|.+-..|..+....+..+
T Consensus        21 ~~v~~G--ei~~llGpNGAGKSTll~~i~Gl~~p~~G-~I~~~g~di~~~~~~~r~r   74 (232)
T cd03218          21 LSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKPDSG-KILLDGQDITKLPMHKRAR   74 (232)
T ss_pred             EEECCC--CEEEEECCCCCCHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHH
T ss_conf             798999--59999999996199999999779999862-9999999999999999997


No 477
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.09  E-value=0.023  Score=38.24  Aligned_cols=43  Identities=33%  Similarity=0.369  Sum_probs=32.4

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             88418996234433346889999999986148950782054221
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR  141 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R  141 (461)
                      .+-.++.++|+|||||||++-=|+-.++...| +|.+-.-|.++
T Consensus        29 ~~Gei~gllG~NGAGKTTllk~l~Gl~~p~~G-~i~i~G~~~~~   71 (293)
T COG1131          29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG-EILVLGYDVVK   71 (293)
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCE-EEEECCCCCCC
T ss_conf             28959999899999899999999679778864-99995862751


No 478
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.09  E-value=0.17  Score=31.63  Aligned_cols=163  Identities=18%  Similarity=0.203  Sum_probs=75.0

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEECCCC-CC--CHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             025884189962344333468899999999861489-----507820542-21--0047799998510347422233210
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKK-----KILMASLDV-HR--PAAQEQLRYLGEQIQVDTLEVIPEQ  166 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~-----kV~lv~~Dt-~R--~aA~eQL~~~a~~~~v~~~~~~~~~  166 (461)
                      +.-.+--++-++|.|||||||.+-=||.-+.-..|.     ++.+++..+ |.  .-+.|-+...+...|.+-      .
T Consensus        45 FeV~kGE~vGIIG~NGAGKSTLLKiIaGI~~PTsG~V~V~Gk~sLL~lgaGf~~eLTGrENI~L~g~~lGlsk------~  118 (549)
T PRK13545         45 FEVPEGEIVGIVGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGITK------E  118 (549)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCH------H
T ss_conf             7864898999988999989999999968988986089994689877405576977629999998899849899------9


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCC-----CCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf             3689999999999741588699833442221124689999-99851385-----11000310111225688889887635
Q gi|254780711|r  167 SPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEIS-EIKSLTNP-----HEILLVADALTGQDAVHLARNFDKIV  240 (461)
Q Consensus       167 dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~-~i~~~~~p-----~e~~lV~da~~Gq~a~~~a~~F~~~~  240 (461)
                      .-.+...+-++++....    .+|.+=|. +...|...|. .+.-.++|     ||++=|-|+.--+-|.+-.+.|.+. 
T Consensus       119 eI~~~~deIiEFAELGd----Fid~PVKt-YSSGMkaRLgFAIA~~~dPDILIIDEaLSVGD~~F~~Kc~~rm~ef~e~-  192 (549)
T PRK13545        119 KIKEIIPEIIDFADIGK----FMYQPVKT-YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ-  192 (549)
T ss_pred             HHHHHHHHHHHHHCHHH----HHHCHHHH-HCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-
T ss_conf             99998999999856788----87382634-0886899999999982499999994620057899999999999999978-


Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCC
Q ss_conf             84407764115766330367778884787302615867
Q gi|254780711|r  241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEK  278 (461)
Q Consensus       241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~  278 (461)
                      +-|=++++-         .++.+...---+.++-.||-
T Consensus       193 gkTIvfVSH---------sl~~Vk~~C~R~iWLe~G~v  221 (549)
T PRK13545        193 GKTIFFISH---------SLSQVKSFCTKALWLHYGQV  221 (549)
T ss_pred             CCEEEEEEC---------CHHHHHHHCCEEEEEECCEE
T ss_conf             988999958---------88999985731063438667


No 479
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09  E-value=0.14  Score=32.29  Aligned_cols=41  Identities=34%  Similarity=0.447  Sum_probs=28.7

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             884189962344333468899999999861489507820542
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV  139 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt  139 (461)
                      .+-..|.+||.+||||||-+-=|...|.-..|. |.+=..|.
T Consensus        26 ~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i   66 (234)
T cd03251          26 PAGETVALVGPSGSGKSTLVNLIPRFYDVDSGR-ILIDGHDV   66 (234)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEEC
T ss_conf             799999999899982999999996676678868-99999996


No 480
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939    This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.08  E-value=0.19  Score=31.25  Aligned_cols=94  Identities=20%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC---------CCCCCCCCCCHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034---------742223321036899
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ---------VDTLEVIPEQSPEKI  171 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~---------v~~~~~~~~~dp~~i  171 (461)
                      .|.=+-|+.||||||-|=.+|-.-.. .|++|.  -.||====..|-+++.|+..+         +-+|....=.+=..+
T Consensus        13 ~iTQiYGp~G~GKTn~c~~~a~~a~~-~Gk~v~--YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~~a   89 (223)
T TIGR02237        13 IITQIYGPPGSGKTNICLILAVNAAR-QGKKVV--YIDTEGGLSPERFKQIAEDRALDPERVLSNVIVFEVFDFDEQEVA   89 (223)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEE--EEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHHHH
T ss_conf             58898758998678999999999986-189589--996289832899999863058898888415355235356789999


Q ss_pred             HHHHHHHHHHC--CCCEEEEECCCCCCC
Q ss_conf             99999999741--588699833442221
Q gi|254780711|r  172 AIRATQSARDG--GYDAVILDTAGRNHI  197 (461)
Q Consensus       172 ~~~a~~~a~~~--~~D~iiiDTaGR~~~  197 (461)
                      ..++...+..+  .+|+|++|..--+..
T Consensus        90 i~~~~~~~~~~G~~~~LvVvDs~t~~YR  117 (223)
T TIGR02237        90 IQKTSKLIDRDGDKADLVVVDSFTALYR  117 (223)
T ss_pred             HHHHHHHHHCCCCEEEEEEEECCHHHHH
T ss_conf             9999999860688331488815334542


No 481
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters.  PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06  E-value=0.053  Score=35.52  Aligned_cols=123  Identities=13%  Similarity=0.061  Sum_probs=53.8

Q ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH---CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             0025884189962344333468899999999861---4895078205422100477999985103474222332103689
Q gi|254780711|r   94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTL---KKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEK  170 (461)
Q Consensus        94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~---~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~  170 (461)
                      .+.-.+-.++.++|+|||||||.+-=||..+...   .| .+.+-..|.....     ..+-  -.+-+........|.-
T Consensus        27 s~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G-~i~~~g~~~~~~~-----~~~~--~~~~~v~q~~~~~~~l   98 (202)
T cd03233          27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG-DIHYNGIPYKEFA-----EKYP--GEIIYVSEEDVHFPTL   98 (202)
T ss_pred             EEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-EEEECCEECCHHH-----HHHH--CCEEEECCCCCCCCCC
T ss_conf             889809849999989999889999998378789875137-9999999940514-----8642--0199986732237688


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHH
Q ss_conf             9999999997415886998334422211246899999985138511000310-111225688
Q gi|254780711|r  171 IAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVH  231 (461)
Q Consensus       171 i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~  231 (461)
                      .+++.++.+.....|-.+=.-+|      . +.+.-.|.++.-.+-.+|++| .+.|-|...
T Consensus        99 tv~e~l~~~~~~~~~~~~~~LSg------G-qkqRv~iA~aL~~~P~illlDEPt~gLD~~~  153 (202)
T cd03233          99 TVRETLDFALRCKGNEFVRGISG------G-ERKRVSIAEALVSRASVLCWDNSTRGLDSST  153 (202)
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCH------H-HHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf             09999999998465874445899------9-9999999999952998899838765689999


No 482
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea.  This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily.  The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05  E-value=0.16  Score=31.84  Aligned_cols=63  Identities=24%  Similarity=0.365  Sum_probs=37.6

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             100025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV  157 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v  157 (461)
                      .+...++  -++.++|+.||||||.+-=+|....-..| .|.+-.-|..+...-+-.+...+.++.
T Consensus        44 sl~i~~G--E~~~ivG~SGsGKSTLLr~i~GL~~p~~G-~I~~~G~~i~~~~~~~l~~~r~~~igm  106 (269)
T cd03294          44 SLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEPTSG-KVLIDGQDIAAMSRKELRELRRKKISM  106 (269)
T ss_pred             EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHHCCCEEE
T ss_conf             7588899--99999989984899999999759999975-999999999999989998852564699


No 483
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.04  E-value=0.18  Score=31.39  Aligned_cols=42  Identities=36%  Similarity=0.339  Sum_probs=28.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             8418996234433346889999999986148950782054221
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR  141 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R  141 (461)
                      .-.++.++|++||||||.+-=+|-.++-..| +|.+-..|.-+
T Consensus        27 ~GE~~~llGpSGsGKSTLlr~iaGL~~p~sG-~I~~~G~dv~~   68 (352)
T PRK10851         27 SGQMVALLGPSGSGKTTLLRIIAGLEHQTSG-HIRFHGTDVSR   68 (352)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCC
T ss_conf             9989999999984699999999769999956-99999999998


No 484
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=95.04  E-value=0.31  Score=29.65  Aligned_cols=81  Identities=17%  Similarity=0.197  Sum_probs=45.9

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHH
Q ss_conf             100025884189962344333468899999999861489507820542210047799998510347422233-2103689
Q gi|254780711|r   92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-PEQSPEK  170 (461)
Q Consensus        92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-~~~dp~~  170 (461)
                      .+...++  -++-+||..||||||.+-=|+...+-..| .|.+-..|..... -.+++.+.+.++. +|... ..-+|..
T Consensus        32 s~~i~~G--E~l~ivGeSGsGKSTL~r~i~gl~~p~sG-~I~~~g~~l~~~~-~~~~~~~rr~i~~-VfQ~~~~slnP~~  106 (266)
T PRK10419         32 SLTLKSG--ETVALLGRSGCGKSTLARLLVGLESPSQG-NISWRGEPLAKLN-RAQRKAFRRDIQM-VFQDSISAVNPRK  106 (266)
T ss_pred             EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCC-HHHHHHHHCCCEE-EEECCHHHCCHHH
T ss_conf             7588899--89999999997799999999669999962-9988999567589-9999997547389-9739136368164


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780711|r  171 IAIRATQ  177 (461)
Q Consensus       171 i~~~a~~  177 (461)
                      .+.+-+.
T Consensus       107 tv~~~i~  113 (266)
T PRK10419        107 TVREILR  113 (266)
T ss_pred             HHHHHHH
T ss_conf             8999999


No 485
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.04  E-value=0.019  Score=38.83  Aligned_cols=46  Identities=30%  Similarity=0.356  Sum_probs=36.4

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             8418996234433346889999999986148950782054221004779999851
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE  153 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~  153 (461)
                      .|.+|++.|..|+||+|.++.||.++-    -+ -++++|+-|    |=|+.+..
T Consensus         2 ~~~iiligG~sGvGKStla~~lA~rlg----i~-~visTD~IR----evlR~~i~   47 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRA----ID-IVLSGDYLR----EFLRPYVD   47 (197)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCC----CC-EEECCHHHH----HHHHHHCC
T ss_conf             747999857998878999999999749----97-553434799----99998668


No 486
>cd03288 ABCC_SUR2 The SUR domain 2.  The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family.  Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel.  Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism.  It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.03  E-value=0.17  Score=31.59  Aligned_cols=42  Identities=19%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             4189962344333468899999999861489507820542210
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP  142 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~  142 (461)
                      -..|.+||.+||||||.+.=|+..|.-..| +|.+-..|....
T Consensus        47 Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G-~I~idg~di~~~   88 (257)
T cd03288          47 GQKVGICGRTGSGKSSLSLAFFRMVDIFDG-KIVIDGIDISKL   88 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCCCCC-EEEECCEEHHHC
T ss_conf             999999999998199999999605667888-899998996879


No 487
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.03  E-value=0.32  Score=29.54  Aligned_cols=166  Identities=22%  Similarity=0.263  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             999999998718-7742100025884189962344333468899999999861489507820542210047799998510
Q gi|254780711|r   76 KIVHDELVEVLG-KESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQ  154 (461)
Q Consensus        76 kiv~~eL~~lLg-~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~  154 (461)
                      .-+.|++++.|. ++..+. .....|-.|.++|-.-+||.|-+-.|    .. +.+ +. ++ |.               
T Consensus       154 ~dLld~v~~~l~~~e~~~~-~~~~~~ikiaiiGrPNvGKSsLiN~i----lg-eeR-~I-v~-~~---------------  209 (444)
T COG1160         154 GDLLDAVLELLPPDEEEEE-EEETDPIKIAIIGRPNVGKSSLINAI----LG-EER-VI-VS-DI---------------  209 (444)
T ss_pred             HHHHHHHHHHCCCCCCCCC-CCCCCCEEEEEEECCCCCCHHHHHHH----CC-CCE-EE-EC-CC---------------
T ss_conf             9999999975677433444-35677508999927878705888775----06-825-98-45-99---------------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC---H--HHHHHHHHHHHHHCCCCCCCCCCCHHCC---
Q ss_conf             3474222332103689999999999741588699833442221---1--2468999999851385110003101112---
Q gi|254780711|r  155 IQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHI---N--DSLMQEISEIKSLTNPHEILLVADALTG---  226 (461)
Q Consensus       155 ~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~---d--~~lm~El~~i~~~~~p~e~~lV~da~~G---  226 (461)
                         +    ..--|++.+.      +..++..+++|||||--..   .  .+-+.-.+.+......+-++||+||.-|   
T Consensus       210 ---a----GTTRD~I~~~------~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~  276 (444)
T COG1160         210 ---A----GTTRDSIDIE------FERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISE  276 (444)
T ss_pred             ---C----CCCCCCEEEE------EEECCEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCCHH
T ss_conf             ---9----8622033125------89988189999877877466412426887505467678656889999988878368


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH---------HHHHHHCCCHHHEECCCCC
Q ss_conf             2568888988763584407764115766330367---------7788847873026158672
Q gi|254780711|r  227 QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAAL---------SMRTVTGKPIKAIGTGEKI  279 (461)
Q Consensus       227 q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~al---------s~~~~~~~PI~fig~GE~~  279 (461)
                      ||. .+|.--.+.---.=+++-|-|.-.+--..+         -..+.-..|+.||+.+.+.
T Consensus       277 qD~-~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~  337 (444)
T COG1160         277 QDL-RIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQ  337 (444)
T ss_pred             HHH-HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf             899-9999999758974999975325785166799999999987221367727999704787


No 488
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=95.03  E-value=0.041  Score=36.35  Aligned_cols=42  Identities=40%  Similarity=0.407  Sum_probs=30.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH
Q ss_conf             9962344333468899999999861489507820542210047799
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL  148 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL  148 (461)
                      .+++-++|+|||.+.+.++.++.. .++++++++ +  |-.=++|.
T Consensus        21 ~~i~~pTGsGKT~~~~~~i~~~~~-~~~~~lvlv-p--~~~L~~Q~   62 (103)
T pfam04851        21 GLIVMATGSGKTLTAAKLIARLLK-GKKKVLFLV-P--RKDLLEQA   62 (103)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEE-C--CHHHHHHH
T ss_conf             699958999879999999999984-699299990-8--29999999


No 489
>KOG1533 consensus
Probab=95.00  E-value=0.026  Score=37.82  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=32.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             189962344333468899999999861489507820542
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV  139 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt  139 (461)
                      .--+++|+.||||||-|.-.-.+|.. -|++|++|..|-
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~~fls~-~gr~~~vVNLDP   40 (290)
T KOG1533           3 FGQVVIGPPGSGKSTYCNGMSQFLSA-IGRPVAVVNLDP   40 (290)
T ss_pred             CCEEEECCCCCCCCCHHHHHHHHHHH-HCCCEEEEECCC
T ss_conf             50688769999853113209999997-489627995687


No 490
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.00  E-value=0.025  Score=37.99  Aligned_cols=26  Identities=38%  Similarity=0.459  Sum_probs=22.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKT  126 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~  126 (461)
                      .+|++.|..|+||||.+.|+|.-+..
T Consensus         1 r~i~i~G~aG~GKTtll~kl~~~wa~   26 (165)
T pfam05729         1 RTVILQGEAGSGKTTLLQKLALLWAQ   26 (165)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             98999827989899999999999986


No 491
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.00  E-value=0.05  Score=35.71  Aligned_cols=37  Identities=32%  Similarity=0.497  Sum_probs=30.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             89962344333468899999999861489507820542
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV  139 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt  139 (461)
                      .|.+.|+.||||||.+--||.-+.. ++..|...+.|-
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~-~i~~vi~l~kdy   39 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQ-EIWRVIHLEKDY   39 (261)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHH-HHHHCCCCCHHH
T ss_conf             6998269998801789999999997-200112132014


No 492
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.98  E-value=0.018  Score=39.05  Aligned_cols=47  Identities=23%  Similarity=0.289  Sum_probs=32.4

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             000258841899623443334688999999998614895078205422
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH  140 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~  140 (461)
                      +.+.-.+-.++-++|+||+||||++-=|+-.+.-..| .|.+-.-|..
T Consensus        21 vsf~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~~G-~i~i~G~~~~   67 (301)
T TIGR03522        21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG-SVQVCGEDVL   67 (301)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECC
T ss_conf             0678859819999999998199999999679568977-7999275134


No 493
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=94.98  E-value=0.046  Score=35.99  Aligned_cols=135  Identities=17%  Similarity=0.196  Sum_probs=76.0

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC----CCCCCCCHHHHHH-
Q ss_conf             88418996234433346889999999986148950782054221004779999851034742----2233210368999-
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT----LEVIPEQSPEKIA-  172 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~----~~~~~~~dp~~i~-  172 (461)
                      +..--++.||-=-+||+|.++.|.+-..   .  |   .-|     -+++++.-+++.|-+.    |+-.......+=. 
T Consensus        25 k~~l~~v~~GhVD~GKSTl~GrlL~~~~---~--v---~~~-----~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~   91 (475)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTK---Q--I---YED-----QLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQ   91 (475)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHCC---C--C---CHH-----HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHC
T ss_conf             9857999990557977888899999819---9--7---889-----9999999999828877722244420599889866


Q ss_pred             ----HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHH---HHHCCCCCE
Q ss_conf             ----9999999741588699833442221124689999998513851100031011122568888988---763584407
Q gi|254780711|r  173 ----IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNF---DKIVDLTGI  245 (461)
Q Consensus       173 ----~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F---~~~~~i~gi  245 (461)
                          --|..+|.-+++.++|+|++|--..=.+|      +..+.+-|-.+||+||..|  ...|.+.-   ...+|+..+
T Consensus        92 GiTIdva~~~f~t~~r~~~i~DaPGH~~f~~NM------itGas~aD~aiLvVdA~~G--~~~QTreH~~i~~llGI~~i  163 (475)
T PRK05124         92 GITIDVAYRYFSTEKRKFIIADTPGHEQYTRNM------ATGASTCDLAILLIDARKG--VLDQTRRHSFIATLLGIKHL  163 (475)
T ss_pred             CCEEEEEEEEEECCCEEEEEEECCCHHHHHHHH------HHHHHHCCEEEEEEECCCC--CHHHHHHHHHHHHHCCCCEE
T ss_conf             971695678995387689997379638778889------8888767889999989889--47888999999986599859


Q ss_pred             --EEEECCCC
Q ss_conf             --76411576
Q gi|254780711|r  246 --ILTRMDGD  253 (461)
Q Consensus       246 --IlTKlD~~  253 (461)
                        .++|||--
T Consensus       164 IVaVNKMDlV  173 (475)
T PRK05124        164 VVAVNKMDLV  173 (475)
T ss_pred             EEEEECHHCC
T ss_conf             9998504313


No 494
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=94.97  E-value=0.36  Score=29.18  Aligned_cols=96  Identities=14%  Similarity=0.198  Sum_probs=66.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC--------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             62344333468899999999861489507820542210--------0477999985103474222332103689999999
Q gi|254780711|r  105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP--------AAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus       105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~--------aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
                      ||.+.|+.-.-.+-+-|..+..+.+-+..++..++-+.        ...+++..+|+++|.++... .+.||++   .-+
T Consensus         3 LV~vd~s~~s~~lir~a~rlA~~~~a~l~vl~V~~~~~~~~~~~~~~~l~~~~~la~~lga~~~~~-~~~d~~~---~I~   78 (124)
T cd01987           3 LVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTL-PGDDVAE---AIV   78 (124)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCHHH---HHH
T ss_conf             999589850799999999999964998999999559756589799999999999999859989999-4799899---999


Q ss_pred             HHHHHCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             9997415886998334422211246899
Q gi|254780711|r  177 QSARDGGYDAVILDTAGRNHINDSLMQE  204 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~E  204 (461)
                      ++|+.++.|.|++-+.||.....-++.-
T Consensus        79 ~~A~~~~~t~IVlG~~~~~~~~~~~~gS  106 (124)
T cd01987          79 EFAREHNVTQIVVGKSRRSRWRELFRGS  106 (124)
T ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHCCC
T ss_conf             9999849989997689885468872388


No 495
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=94.97  E-value=0.017  Score=39.35  Aligned_cols=45  Identities=22%  Similarity=0.192  Sum_probs=30.8

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             0002588418996234433346889999999986148950782054
Q gi|254780711|r   93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD  138 (461)
Q Consensus        93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D  138 (461)
                      +.+.-.+-.++-|+|+||+|||||+-=|+-.++-..| .|.+-.-|
T Consensus        24 vs~~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~sG-~v~i~G~~   68 (304)
T PRK13537         24 LSFHVQPGECFGLLGPNGAGKTTTLKMLLGLTHPDAG-TISLCGEP   68 (304)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEE
T ss_conf             1778869959999999897299999999779568976-89999998


No 496
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport.  These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2).  No known transmembrane proteins or domains are associated with these proteins.
Probab=94.95  E-value=0.16  Score=31.92  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             8418996234433346889999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYH  123 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~  123 (461)
                      ...++++.|+||+||||.+--++.-
T Consensus        20 ~g~~~iItGpN~sGKSt~Lr~i~l~   44 (162)
T cd03227          20 EGSLTIITGPNGSGKSTILDAIGLA   44 (162)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             9868999899877579999999999


No 497
>PRK13409 putative ATPase RIL; Provisional
Probab=94.95  E-value=0.053  Score=35.51  Aligned_cols=33  Identities=21%  Similarity=0.183  Sum_probs=24.6

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             588418996234433346889999999986148
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK  129 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~  129 (461)
                      +.+-.|+=++|+||+||||+.-=||-.++-.-|
T Consensus        96 p~~G~v~GLiG~NGaGKST~lkILsG~l~Pn~G  128 (590)
T PRK13409         96 PKEGKVTGILGPNGIGKSTAVKILSGELIPNLG  128 (590)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf             999878998899999899999999587148889


No 498
>TIGR00708 cobA cob(I)alamin adenosyltransferase; InterPro: IPR003724   ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type  and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution.    This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid ac-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=94.93  E-value=0.31  Score=29.67  Aligned_cols=135  Identities=27%  Similarity=0.260  Sum_probs=78.8

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC----C--CCCCCHHHHHHHHHHHCCC----C---------C
Q ss_conf             884189962344333468899999999861489507820----5--4221004779999851034----7---------4
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS----L--DVHRPAAQEQLRYLGEQIQ----V---------D  158 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~----~--Dt~R~aA~eQL~~~a~~~~----v---------~  158 (461)
                      ..|-|+.+.| ||=||||.+-=+|.+-.. .|.+|+||-    +  ..==-+++.||+.+-++.|    |         +
T Consensus         4 ~~G~i~v~TG-nGKGKtTAAlG~alR~lg-~G~~v~v~QF~K~akw~~GE~a~f~~~~rlhdqhGiG~~~~F~~~~~G~~   81 (191)
T TIGR00708         4 EKGIIIVHTG-NGKGKTTAALGMALRALG-HGKKVGVIQFIKGAKWKVGEKAAFEPLGRLHDQHGIGEKVEFKVMGEGFT   81 (191)
T ss_pred             CCCCEEEEEC-CCCCHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf             5860789846-998366899999998740-89816898741478874778999999876543137775411223303786


Q ss_pred             CCCC--CCCCHH--HHHHHHHHHHHH----HCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHH
Q ss_conf             2223--321036--899999999997----41588699833442-22112468999999851385110003101-11225
Q gi|254780711|r  159 TLEV--IPEQSP--EKIAIRATQSAR----DGGYDAVILDTAGR-NHINDSLMQEISEIKSLTNPHEILLVADA-LTGQD  228 (461)
Q Consensus       159 ~~~~--~~~~dp--~~i~~~a~~~a~----~~~~D~iiiDTaGR-~~~d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~  228 (461)
                      -...  ..++|.  ++-|+++.+.++    +..||+||.|=--= +..+---++|..+..+ -+|....+||-+ -.-|+
T Consensus        82 w~~~~r~~~~~idra~AA~~aw~~a~~~~~~~~~dlvLLDE~~~~l~~GyL~veeV~~~L~-~kp~~~~vvlTGR~aP~~  160 (191)
T TIGR00708        82 WETQDRKADTDIDRAKAAKEAWQKAKEVLADSEYDLVLLDELTVALKFGYLDVEEVVEVLQ-EKPKSQHVVLTGRGAPQE  160 (191)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHH-CCCCCCEEEEECCCCCHH
T ss_conf             4447885411588999999999999998649887764034234555348978899999985-584567788866878688


Q ss_pred             HHHHHHH
Q ss_conf             6888898
Q gi|254780711|r  229 AVHLARN  235 (461)
Q Consensus       229 a~~~a~~  235 (461)
                      -++.|..
T Consensus       161 L~~~AD~  167 (191)
T TIGR00708       161 LVELADL  167 (191)
T ss_pred             HHHHCCC
T ss_conf             9975151


No 499
>PRK06761 hypothetical protein; Provisional
Probab=94.93  E-value=0.049  Score=35.76  Aligned_cols=41  Identities=32%  Similarity=0.473  Sum_probs=29.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCH
Q ss_conf             89962344333468899999999861489507-8205422100
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-MASLDVHRPA  143 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~-lv~~Dt~R~a  143 (461)
                      .|++=|+.|||||||+-+|+..|.. .|..|. ..-+|.--|+
T Consensus         4 LIiIEGlPGsGKSTta~~l~d~L~~-~g~~v~~~~Egd~~hP~   45 (281)
T PRK06761          4 LIIIEGLPGFGKSTTAHLLNDKLSQ-LKIEVELFVEGDLNHPA   45 (281)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCC
T ss_conf             7999668999801499999999986-69853899507899961


No 500
>KOG1969 consensus
Probab=94.92  E-value=0.08  Score=34.11  Aligned_cols=50  Identities=20%  Similarity=0.205  Sum_probs=37.0

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             418996234433346889999999986148950782054221004779999851
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE  153 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~  153 (461)
                      ..+.|++|+.|.||||-    |+-..++-|++|.=|.|-.-|.|+.---+.++-
T Consensus       326 kKilLL~GppGlGKTTL----AHViAkqaGYsVvEINASDeRt~~~v~~kI~~a  375 (877)
T KOG1969         326 KKILLLCGPPGLGKTTL----AHVIAKQAGYSVVEINASDERTAPMVKEKIENA  375 (877)
T ss_pred             CCEEEEECCCCCCHHHH----HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             00687536887872479----999998628548873255543478899999998


Done!