Query gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 461
No_of_seqs 199 out of 3082
Neff 5.5
Searched_HMMs 39220
Date Sun May 29 20:24:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780711.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00959 ffh signal recogniti 100.0 0 0 1281.5 37.7 428 2-429 1-439 (439)
2 COG0541 Ffh Signal recognition 100.0 0 0 1158.5 46.0 437 1-439 1-437 (451)
3 PRK10867 signal recognition pa 100.0 0 0 1144.9 46.2 441 1-442 1-442 (453)
4 PRK00771 signal recognition pa 100.0 0 0 1095.1 44.4 429 1-438 2-430 (433)
5 TIGR01425 SRP54_euk signal rec 100.0 0 0 1006.6 24.6 425 1-426 1-453 (453)
6 KOG0780 consensus 100.0 0 0 944.2 37.4 431 1-435 2-434 (483)
7 TIGR00064 ftsY signal recognit 100.0 0 0 659.8 22.2 268 27-295 3-284 (284)
8 PRK10416 cell division protein 100.0 0 0 616.6 28.7 284 7-299 210-499 (499)
9 COG0552 FtsY Signal recognitio 100.0 0 0 591.9 25.5 290 2-296 34-340 (340)
10 PRK06731 flhF flagellar biosyn 100.0 0 0 547.5 26.2 264 20-297 4-269 (270)
11 PRK12726 flagellar biosynthesi 100.0 0 0 452.2 22.6 215 79-299 184-402 (407)
12 KOG0781 consensus 100.0 0 0 441.3 23.9 288 7-295 278-586 (587)
13 PRK12723 flagellar biosynthesi 100.0 0 0 432.5 27.5 267 30-309 110-384 (388)
14 pfam00448 SRP54 SRP54-type pro 100.0 0 0 445.6 18.6 196 100-296 1-196 (196)
15 PRK12724 flagellar biosynthesi 100.0 0 0 405.4 24.4 263 29-303 155-423 (432)
16 PRK05703 flhF flagellar biosyn 100.0 0 0 391.7 23.5 253 28-300 151-406 (412)
17 cd03115 SRP The signal recogni 100.0 0 0 390.1 16.8 173 101-274 1-173 (173)
18 PRK06995 flhF flagellar biosyn 100.0 1.4E-45 0 368.2 23.1 250 32-299 119-371 (404)
19 PRK11889 flhF flagellar biosyn 100.0 1.4E-45 0 367.3 21.8 253 30-296 179-434 (436)
20 COG1419 FlhF Flagellar GTP-bin 100.0 3.5E-44 0 357.3 21.6 219 73-300 178-399 (407)
21 PRK12727 flagellar biosynthesi 100.0 6.1E-41 1.4E-45 332.6 22.7 237 37-294 298-537 (557)
22 pfam02978 SRP_SPB Signal pepti 100.0 4.3E-31 1.1E-35 257.5 10.1 100 327-427 1-100 (100)
23 TIGR03499 FlhF flagellar biosy 99.9 1E-26 2.6E-31 224.1 15.7 149 28-193 133-282 (282)
24 PRK09841 cryptic autophosphory 98.8 2.4E-07 6.2E-12 76.2 12.8 148 97-253 528-706 (726)
25 TIGR03029 EpsG chain length de 98.7 1.2E-05 2.9E-10 63.4 19.0 142 99-249 102-274 (274)
26 PRK11519 tyrosine kinase; Prov 98.7 9.9E-07 2.5E-11 71.6 13.3 149 96-253 522-701 (720)
27 cd00550 ArsA_ATPase Oxyanion-t 98.7 4.8E-07 1.2E-11 74.0 11.4 148 101-251 1-200 (254)
28 pfam02374 ArsA_ATPase Anion-tr 98.6 1.6E-06 4.1E-11 70.0 12.6 38 101-139 2-39 (304)
29 PHA02518 ParA-like protein; Pr 98.6 8.3E-07 2.1E-11 72.2 10.3 152 102-271 2-165 (211)
30 pfam07015 VirC1 VirC1 protein. 98.6 1.2E-06 3.1E-11 70.9 10.8 136 102-253 3-153 (231)
31 cd03114 ArgK-like The function 98.6 9.8E-07 2.5E-11 71.6 10.1 137 102-251 1-148 (148)
32 PRK13849 putative crown gall t 98.5 1.3E-06 3.3E-11 70.7 10.6 135 102-252 3-152 (231)
33 cd02035 ArsA ArsA ATPase funct 98.5 2.7E-06 6.9E-11 68.3 12.2 144 102-251 1-181 (217)
34 pfam01656 CbiA CobQ/CobB/MinD/ 98.5 1.5E-06 3.8E-11 70.2 9.9 155 107-271 6-198 (212)
35 TIGR03018 pepcterm_TyrKin exop 98.5 4.2E-06 1.1E-10 66.8 12.0 143 96-247 31-206 (207)
36 PRK09435 arginine/ornithine tr 98.5 5.9E-06 1.5E-10 65.6 12.1 155 97-265 46-212 (325)
37 KOG0924 consensus 98.5 1.3E-05 3.2E-10 63.2 13.8 200 77-311 359-587 (1042)
38 COG1341 Predicted GTPase or GT 98.4 3.8E-06 9.7E-11 67.1 10.4 124 93-223 66-210 (398)
39 pfam02492 cobW CobW/HypB/UreG, 98.4 3E-06 7.7E-11 67.9 9.9 142 102-253 2-150 (174)
40 COG1703 ArgK Putative periplas 98.4 2E-05 5E-10 61.7 12.8 155 93-264 44-210 (323)
41 PRK13869 plasmid-partitioning 98.3 1.5E-05 3.8E-10 62.6 11.8 43 98-141 119-162 (405)
42 cd02117 NifH_like This family 98.3 1E-05 2.6E-10 63.8 10.9 163 102-271 2-206 (212)
43 COG0378 HypB Ni2+-binding GTPa 98.3 3.4E-06 8.7E-11 67.5 7.8 169 97-285 9-195 (202)
44 smart00382 AAA ATPases associa 98.3 7.8E-06 2E-10 64.7 9.4 119 100-225 2-124 (148)
45 TIGR03453 partition_RepA plasm 98.3 2.9E-05 7.5E-10 60.3 12.1 44 96-140 100-144 (387)
46 PRK13768 GTPase; Provisional 98.3 0.00051 1.3E-08 50.8 18.5 117 100-225 2-140 (253)
47 pfam03308 ArgK ArgK protein. T 98.3 4.2E-05 1.1E-09 59.2 12.8 141 97-252 26-179 (267)
48 pfam09140 MipZ ATPase MipZ. Mi 98.3 5.4E-06 1.4E-10 65.9 8.1 86 110-197 11-112 (261)
49 pfam00142 Fer4_NifH 4Fe-4S iro 98.3 1.5E-05 3.9E-10 62.5 10.4 166 102-275 2-207 (269)
50 TIGR03371 cellulose_yhjQ cellu 98.3 9.1E-06 2.3E-10 64.2 9.2 159 102-270 3-200 (246)
51 COG1192 Soj ATPases involved i 98.3 1.3E-05 3.2E-10 63.1 9.8 163 100-264 2-202 (259)
52 PRK13705 plasmid-partitioning 98.2 1.1E-05 2.7E-10 63.7 8.9 58 80-140 88-147 (388)
53 COG0003 ArsA Predicted ATPase 98.2 8.5E-06 2.2E-10 64.4 8.1 97 100-197 2-139 (322)
54 cd03110 Fer4_NifH_child This p 98.2 2.3E-05 5.9E-10 61.1 10.2 149 106-270 6-174 (179)
55 PRK08533 flagellar accessory p 98.2 7.8E-05 2E-09 57.1 12.7 192 76-288 7-217 (230)
56 TIGR01007 eps_fam capsular exo 98.2 2.5E-05 6.3E-10 60.9 10.1 145 100-253 19-196 (207)
57 COG1643 HrpA HrpA-like helicas 98.2 5.8E-05 1.5E-09 58.1 11.8 150 73-237 49-215 (845)
58 pfam02881 SRP54_N SRP54-type p 98.2 2.8E-06 7.1E-11 68.1 5.0 56 23-82 22-77 (77)
59 cd02040 NifH NifH gene encodes 98.2 8.8E-05 2.3E-09 56.7 12.3 39 101-140 2-40 (270)
60 cd02036 MinD Bacterial cell di 98.1 4.3E-05 1.1E-09 59.1 10.3 139 103-270 2-146 (179)
61 PRK10818 cell division inhibit 98.1 7.7E-05 2E-09 57.2 11.3 153 102-263 4-197 (270)
62 TIGR00750 lao LAO/AO transport 98.1 7.4E-05 1.9E-09 57.3 11.2 147 92-253 30-195 (333)
63 PRK13233 nifH nitrogenase redu 98.1 0.00013 3.3E-09 55.4 12.2 166 101-271 3-208 (275)
64 PRK09361 radB DNA repair and r 98.1 0.00011 2.7E-09 56.1 11.6 106 81-195 11-119 (224)
65 cd02032 Bchl_like This family 98.1 0.00016 4E-09 54.8 12.3 197 102-326 2-246 (267)
66 PRK00090 bioD dithiobiotin syn 98.1 0.00032 8.2E-09 52.4 13.6 170 102-280 1-202 (223)
67 PRK13231 nitrogenase reductase 98.1 0.00016 4E-09 54.8 11.9 162 102-271 4-199 (264)
68 PRK11131 ATP-dependent RNA hel 98.1 8.7E-05 2.2E-09 56.7 10.6 132 101-237 90-238 (1295)
69 PRK11537 putative GTP-binding 98.0 0.00029 7.3E-09 52.8 13.1 169 102-277 6-189 (317)
70 KOG1805 consensus 98.0 5.7E-05 1.5E-09 58.1 8.7 168 20-196 607-809 (1100)
71 PRK01077 cobyrinic acid a,c-di 98.0 0.00069 1.8E-08 49.9 13.9 173 102-297 5-193 (451)
72 cd03112 CobW_like The function 97.9 0.00013 3.4E-09 55.3 9.8 143 102-251 2-157 (158)
73 cd02042 ParA ParA and ParB of 97.9 1.8E-05 4.5E-10 62.0 5.2 47 109-199 9-55 (104)
74 cd01983 Fer4_NifH The Fer4_Nif 97.9 2.9E-05 7.3E-10 60.4 6.1 69 102-224 1-69 (99)
75 PRK11664 ATP-dependent RNA hel 97.9 0.00013 3.3E-09 55.4 9.3 131 102-241 22-169 (812)
76 PHA02519 plasmid partition pro 97.9 0.00012 3E-09 55.7 9.0 58 80-140 88-147 (387)
77 TIGR03574 selen_PSTK L-seryl-t 97.9 0.00027 6.8E-09 53.0 10.5 114 103-239 2-115 (249)
78 pfam06414 Zeta_toxin Zeta toxi 97.9 0.00011 2.9E-09 55.9 8.6 106 96-207 8-114 (191)
79 PRK06067 flagellar accessory p 97.9 0.00054 1.4E-08 50.7 12.0 106 80-193 19-137 (241)
80 PRK04220 2-phosphoglycerate ki 97.9 0.00013 3.2E-09 55.5 8.5 108 34-152 22-135 (306)
81 cd01394 radB RadB. The archaea 97.8 0.00074 1.9E-08 49.6 12.3 107 80-195 6-115 (218)
82 cd02038 FleN-like FleN is a me 97.8 0.00046 1.2E-08 51.2 11.0 123 106-275 6-137 (139)
83 PRK08116 hypothetical protein; 97.8 0.0003 7.5E-09 52.7 10.0 137 99-306 107-243 (262)
84 pfam00009 GTP_EFTU Elongation 97.8 0.00013 3.2E-09 55.5 8.0 123 101-253 4-132 (185)
85 cd02037 MRP-like MRP (Multiple 97.8 0.00053 1.4E-08 50.7 11.0 123 104-249 4-130 (169)
86 PRK04328 hypothetical protein; 97.8 0.0018 4.7E-08 46.6 13.7 66 81-158 12-77 (250)
87 COG3640 CooC CO dehydrogenase 97.8 0.00076 1.9E-08 49.5 11.7 170 102-296 2-230 (255)
88 PRK11670 putative ATPase; Prov 97.8 0.002 5E-08 46.4 13.6 173 68-248 60-277 (369)
89 PRK13232 nifH nitrogenase redu 97.8 0.00017 4.4E-09 54.5 8.2 146 102-253 3-187 (273)
90 PRK09111 DNA polymerase III su 97.8 0.0067 1.7E-07 42.3 17.7 220 98-340 43-304 (600)
91 cd01878 HflX HflX subfamily. 97.8 0.0004 1E-08 51.7 9.8 148 98-283 40-197 (204)
92 pfam03796 DnaB_C DnaB-like hel 97.8 0.00067 1.7E-08 50.0 11.0 115 101-223 20-137 (186)
93 PRK13230 nitrogenase reductase 97.8 0.001 2.6E-08 48.6 11.9 38 102-140 3-40 (292)
94 PRK05291 trmE tRNA modificatio 97.7 0.00021 5.4E-09 53.8 7.8 163 76-288 194-364 (445)
95 PRK13235 nifH nitrogenase redu 97.7 0.00031 7.8E-09 52.6 8.6 165 102-272 3-208 (274)
96 KOG0923 consensus 97.7 0.00018 4.6E-09 54.3 7.4 124 98-225 278-420 (902)
97 PRK04301 radA DNA repair and r 97.7 0.0055 1.4E-07 43.0 15.0 167 13-196 20-212 (318)
98 PRK06647 DNA polymerase III su 97.7 0.0035 9E-08 44.5 14.0 219 97-339 35-287 (560)
99 TIGR01420 pilT_fam twitching m 97.7 0.00011 2.7E-09 56.1 6.2 119 102-241 129-249 (350)
100 pfam06745 KaiC KaiC. This fami 97.7 0.00087 2.2E-08 49.1 10.7 68 81-159 7-74 (231)
101 pfam08433 KTI12 Chromatin asso 97.7 0.00075 1.9E-08 49.6 10.4 115 103-239 2-116 (266)
102 COG4240 Predicted kinase [Gene 97.7 0.00048 1.2E-08 51.1 9.3 76 74-150 25-100 (300)
103 TIGR03015 pepcterm_ATPase puta 97.7 0.00068 1.7E-08 49.9 10.1 144 101-252 44-194 (269)
104 PRK06645 DNA polymerase III su 97.7 0.0051 1.3E-07 43.2 14.5 226 97-343 40-307 (507)
105 pfam03029 ATP_bind_1 Conserved 97.7 0.00024 6.2E-09 53.3 7.5 130 105-253 1-167 (234)
106 cd01886 EF-G Elongation factor 97.7 0.00039 9.9E-09 51.8 8.6 214 103-345 2-241 (270)
107 PRK10463 hydrogenase nickel in 97.7 0.00044 1.1E-08 51.3 8.8 144 95-256 99-246 (290)
108 cd04170 EF-G_bact Elongation f 97.7 0.00047 1.2E-08 51.1 8.9 204 103-346 2-240 (268)
109 COG0455 flhG Antiactivator of 97.7 0.0015 3.9E-08 47.3 11.4 145 100-255 2-181 (262)
110 COG1618 Predicted nucleotide k 97.6 0.00032 8.2E-09 52.4 7.9 143 100-256 5-165 (179)
111 PRK05896 DNA polymerase III su 97.6 0.005 1.3E-07 43.3 14.0 219 97-340 35-288 (613)
112 pfam01583 APS_kinase Adenylyls 97.6 0.00088 2.3E-08 49.1 10.1 82 99-194 1-84 (157)
113 KOG0922 consensus 97.6 0.00038 9.6E-09 51.9 8.1 154 102-262 68-248 (674)
114 CHL00175 minD septum-site dete 97.6 0.00029 7.4E-09 52.7 7.5 152 93-253 6-189 (279)
115 PRK12323 DNA polymerase III su 97.6 0.011 2.7E-07 40.8 15.9 216 98-339 36-292 (721)
116 TIGR00345 arsA arsenite-activa 97.6 0.00025 6.5E-09 53.2 7.0 215 105-390 2-229 (330)
117 cd04168 TetM_like Tet(M)-like 97.6 0.0047 1.2E-07 43.6 13.4 196 103-344 2-207 (237)
118 PRK09302 circadian clock prote 97.6 0.0008 2.1E-08 49.4 9.5 111 99-213 23-157 (501)
119 TIGR03348 VI_IcmF type VI secr 97.6 0.00065 1.7E-08 50.1 9.0 117 102-254 113-257 (1169)
120 TIGR01967 DEAH_box_HrpA ATP-de 97.6 0.00017 4.2E-09 54.6 5.9 134 101-239 85-235 (1320)
121 cd00984 DnaB_C DnaB helicase C 97.6 0.0033 8.4E-08 44.7 12.1 115 101-223 14-131 (242)
122 KOG0925 consensus 97.6 0.00046 1.2E-08 51.2 7.6 131 101-240 63-210 (699)
123 PRK12402 replication factor C 97.5 0.0054 1.4E-07 43.0 13.1 109 97-211 34-151 (337)
124 cd00009 AAA The AAA+ (ATPases 97.5 0.00071 1.8E-08 49.8 8.5 79 99-195 18-96 (151)
125 KOG2878 consensus 97.5 0.00065 1.7E-08 50.1 8.2 80 78-157 8-90 (282)
126 COG2805 PilT Tfp pilus assembl 97.5 0.00056 1.4E-08 50.5 7.9 121 101-241 126-247 (353)
127 PRK09401 reverse gyrase; Revie 97.5 0.00054 1.4E-08 50.7 7.7 98 103-201 96-194 (1176)
128 cd01120 RecA-like_NTPases RecA 97.5 0.0011 2.7E-08 48.4 9.2 96 102-198 1-100 (165)
129 cd01895 EngA2 EngA2 subfamily. 97.5 0.00071 1.8E-08 49.8 8.3 147 100-283 2-167 (174)
130 PRK00784 cobyric acid synthase 97.5 0.006 1.5E-07 42.7 13.0 175 102-283 5-232 (492)
131 pfam08423 Rad51 Rad51. Rad51 i 97.5 0.0046 1.2E-07 43.6 12.3 174 42-253 6-199 (261)
132 pfam06564 YhjQ YhjQ protein. T 97.5 0.00026 6.7E-09 53.1 5.7 38 102-140 3-41 (244)
133 PTZ00035 Rad51; Provisional 97.5 0.016 4E-07 39.5 15.6 105 81-195 118-237 (350)
134 COG0489 Mrp ATPases involved i 97.5 0.00084 2.1E-08 49.2 8.2 148 99-254 56-233 (265)
135 cd04163 Era Era subfamily. Er 97.5 0.0022 5.5E-08 46.1 10.3 145 102-283 5-161 (168)
136 COG0523 Putative GTPases (G3E 97.5 0.0006 1.5E-08 50.3 7.4 180 102-289 3-202 (323)
137 COG0467 RAD55 RecA-superfamily 97.5 0.0017 4.4E-08 46.9 9.6 145 101-251 24-194 (260)
138 PRK12337 2-phosphoglycerate ki 97.4 0.0012 3.2E-08 47.9 8.7 115 34-159 192-312 (492)
139 cd01122 GP4d_helicase GP4d_hel 97.4 0.0042 1.1E-07 43.9 11.4 144 101-250 31-190 (271)
140 PRK06305 DNA polymerase III su 97.4 0.018 4.6E-07 39.1 16.4 218 97-339 36-289 (462)
141 PRK06696 uridine kinase; Valid 97.4 0.0009 2.3E-08 49.0 7.7 51 95-146 21-71 (227)
142 cd01131 PilT Pilus retraction 97.4 0.00043 1.1E-08 51.4 6.0 80 102-191 3-82 (198)
143 cd01124 KaiC KaiC is a circadi 97.4 0.0011 2.8E-08 48.4 8.0 52 103-159 2-53 (187)
144 PRK05541 adenylylsulfate kinas 97.4 0.00026 6.6E-09 53.1 4.7 101 97-220 4-109 (176)
145 cd02027 APSK Adenosine 5'-phos 97.4 0.0021 5.3E-08 46.2 9.2 78 102-193 1-80 (149)
146 cd02034 CooC The accessory pro 97.4 0.00092 2.3E-08 48.9 7.3 85 103-193 2-96 (116)
147 PRK05595 replicative DNA helic 97.4 0.022 5.5E-07 38.5 17.1 60 101-164 202-263 (444)
148 PRK13896 cobyrinic acid a,c-di 97.4 0.013 3.4E-07 40.0 13.1 170 103-297 4-187 (432)
149 PRK03003 engA GTP-binding prot 97.4 0.0025 6.4E-08 45.6 9.3 163 77-278 189-367 (474)
150 pfam03266 DUF265 Protein of un 97.3 0.0014 3.6E-08 47.5 8.0 129 103-239 2-147 (168)
151 PRK12374 putative dithiobiotin 97.3 0.016 4.2E-07 39.4 13.4 179 103-293 5-214 (231)
152 smart00487 DEXDc DEAD-like hel 97.3 0.0028 7.1E-08 45.3 9.2 133 101-237 25-182 (201)
153 cd01891 TypA_BipA TypA (tyrosi 97.3 0.0048 1.2E-07 43.4 10.2 152 102-284 4-175 (194)
154 PRK13234 nifH nitrogenase redu 97.3 0.013 3.4E-07 40.1 12.4 208 101-327 5-252 (293)
155 KOG1532 consensus 97.3 0.0019 4.9E-08 46.5 8.0 201 96-340 15-242 (366)
156 PRK06835 DNA replication prote 97.3 0.011 2.9E-07 40.6 11.9 160 65-304 156-315 (330)
157 cd02028 UMPK_like Uridine mono 97.3 0.00037 9.4E-09 52.0 4.3 40 102-142 1-40 (179)
158 COG2074 2-phosphoglycerate kin 97.2 0.002 5E-08 46.4 7.7 108 34-153 20-133 (299)
159 PRK04040 adenylate kinase; Pro 97.2 0.0011 2.8E-08 48.3 6.4 170 100-295 2-184 (189)
160 KOG2743 consensus 97.2 0.0052 1.3E-07 43.2 9.9 148 98-254 56-225 (391)
161 cd04165 GTPBP1_like GTPBP1-lik 97.2 0.0015 3.9E-08 47.2 7.1 69 179-254 79-152 (224)
162 PRK07270 DNA polymerase III su 97.2 0.031 7.9E-07 37.3 22.5 304 97-432 34-389 (557)
163 CHL00181 cbbX CbbX; Provisiona 97.2 0.023 5.8E-07 38.3 12.9 124 23-195 10-134 (287)
164 PRK08770 DNA polymerase III su 97.2 0.003 7.7E-08 45.0 8.4 27 98-124 36-62 (663)
165 PRK06526 transposase; Provisio 97.2 0.0044 1.1E-07 43.7 9.2 143 36-209 40-185 (254)
166 PRK05537 bifunctional sulfate 97.2 0.0017 4.2E-08 47.0 7.0 38 392-429 425-463 (568)
167 PRK07003 DNA polymerase III su 97.2 0.0086 2.2E-07 41.5 10.6 214 98-337 36-285 (816)
168 PRK05648 DNA polymerase III su 97.2 0.0023 5.9E-08 45.9 7.7 218 98-339 36-287 (705)
169 PRK09302 circadian clock prote 97.2 0.0051 1.3E-07 43.2 9.4 90 99-193 265-366 (501)
170 PRK08233 hypothetical protein; 97.2 0.0036 9.1E-08 44.4 8.6 84 98-192 1-86 (182)
171 COG0464 SpoVK ATPases of the A 97.2 0.033 8.5E-07 37.0 14.7 200 97-341 273-484 (494)
172 COG1110 Reverse gyrase [DNA re 97.2 0.0025 6.3E-08 45.7 7.7 95 103-198 100-195 (1187)
173 PRK08691 DNA polymerase III su 97.2 0.034 8.8E-07 36.9 16.1 215 98-337 36-285 (704)
174 cd04164 trmE TrmE (MnmE, ThdF, 97.2 0.0036 9.1E-08 44.4 8.4 141 102-283 3-149 (157)
175 PRK05748 replicative DNA helic 97.2 0.035 9E-07 36.8 16.9 114 100-223 203-322 (448)
176 PRK10733 hflB ATP-dependent me 97.1 0.036 9.3E-07 36.7 14.7 210 80-340 165-392 (644)
177 pfam01695 IstB IstB-like ATP b 97.1 0.0057 1.5E-07 42.9 9.2 92 95-209 43-134 (178)
178 pfam00154 RecA recA bacterial 97.1 0.012 3.1E-07 40.4 10.8 98 101-205 53-152 (322)
179 PRK07263 consensus 97.1 0.039 9.8E-07 36.5 18.2 117 100-223 203-323 (453)
180 PRK05480 uridine kinase; Provi 97.1 0.00083 2.1E-08 49.3 4.7 41 97-140 3-43 (209)
181 PRK07133 DNA polymerase III su 97.1 0.0018 4.7E-08 46.6 6.4 216 97-340 37-287 (718)
182 PRK03846 adenylylsulfate kinas 97.1 0.00076 2E-08 49.5 4.4 47 96-143 20-66 (198)
183 cd01393 recA_like RecA is a b 97.1 0.0094 2.4E-07 41.2 9.9 109 81-196 7-127 (226)
184 cd03216 ABC_Carb_Monos_I This 97.1 0.0036 9.3E-08 44.4 7.8 106 95-212 21-128 (163)
185 pfam01591 6PF2K 6-phosphofruct 97.1 0.0052 1.3E-07 43.2 8.5 177 98-296 11-218 (223)
186 cd01121 Sms Sms (bacterial rad 97.1 0.0098 2.5E-07 41.1 9.8 100 80-195 69-170 (372)
187 PRK13695 putative NTPase; Prov 97.1 0.004 1E-07 44.1 7.8 114 100-221 3-136 (174)
188 cd00983 recA RecA is a bacter 97.1 0.011 2.9E-07 40.6 10.1 94 101-201 56-151 (325)
189 TIGR00073 hypB hydrogenase acc 97.0 0.0027 6.9E-08 45.3 6.9 143 95-257 29-181 (225)
190 PRK10865 protein disaggregatio 97.0 0.016 4.2E-07 39.4 10.9 28 98-126 198-225 (857)
191 COG2874 FlaH Predicted ATPases 97.0 0.0063 1.6E-07 42.6 8.8 194 74-289 9-223 (235)
192 COG0468 RecA RecA/RadA recombi 97.0 0.0098 2.5E-07 41.1 9.7 96 100-197 60-155 (279)
193 cd04171 SelB SelB subfamily. 97.0 0.0052 1.3E-07 43.2 8.2 143 102-284 2-159 (164)
194 cd04169 RF3 RF3 subfamily. Pe 97.0 0.00075 1.9E-08 49.6 3.9 152 101-279 3-168 (267)
195 PRK08181 transposase; Validate 97.0 0.016 4.2E-07 39.4 10.7 143 37-208 48-192 (269)
196 cd00881 GTP_translation_factor 97.0 0.0032 8.2E-08 44.8 7.0 120 103-253 2-127 (189)
197 TIGR02533 type_II_gspE general 97.0 0.00018 4.6E-09 54.3 0.6 122 33-189 196-320 (495)
198 PRK08451 DNA polymerase III su 97.0 0.0098 2.5E-07 41.1 9.4 194 97-314 33-258 (523)
199 cd01894 EngA1 EngA1 subfamily. 97.0 0.0047 1.2E-07 43.5 7.8 119 105-260 2-125 (157)
200 cd02021 GntK Gluconate kinase 97.0 0.005 1.3E-07 43.3 7.9 82 102-193 1-82 (150)
201 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.0 0.0036 9.2E-08 44.4 7.1 137 98-281 13-166 (174)
202 PRK09183 transposase/IS protei 97.0 0.008 2E-07 41.8 8.8 145 36-208 43-188 (258)
203 COG0563 Adk Adenylate kinase a 97.0 0.0041 1E-07 44.0 7.3 94 102-203 2-97 (178)
204 PRK10875 recD exonuclease V su 97.0 0.0028 7E-08 45.3 6.3 115 102-223 164-296 (607)
205 PRK06872 DNA polymerase III su 97.0 0.015 3.7E-07 39.8 10.0 27 98-124 36-62 (696)
206 COG2804 PulE Type II secretory 97.0 0.0017 4.3E-08 46.9 5.2 77 99-191 256-335 (500)
207 PRK11823 DNA repair protein Ra 96.9 0.013 3.4E-07 40.1 9.6 100 80-196 77-178 (454)
208 PRK00889 adenylylsulfate kinas 96.9 0.0015 3.9E-08 47.3 4.7 45 98-143 2-46 (175)
209 COG1066 Sms Predicted ATP-depe 96.9 0.017 4.2E-07 39.3 10.0 106 77-199 77-184 (456)
210 TIGR03346 chaperone_ClpB ATP-d 96.9 0.016 4.1E-07 39.5 9.9 27 99-126 194-220 (852)
211 TIGR01054 rgy reverse gyrase; 96.9 0.0034 8.6E-08 44.6 6.4 95 103-198 102-200 (1843)
212 PTZ00301 uridine kinase; Provi 96.9 0.0019 4.8E-08 46.6 5.1 44 99-142 2-46 (210)
213 cd01672 TMPK Thymidine monopho 96.9 0.028 7.1E-07 37.6 11.1 34 102-136 2-35 (200)
214 PRK13973 thymidylate kinase; P 96.9 0.022 5.7E-07 38.4 10.6 116 101-219 4-134 (216)
215 cd01887 IF2_eIF5B IF2/eIF5B (i 96.9 0.018 4.5E-07 39.1 10.1 139 102-283 2-158 (168)
216 PRK00313 lpxK tetraacyldisacch 96.9 0.0047 1.2E-07 43.5 7.0 196 107-333 60-279 (332)
217 PRK00698 tmk thymidylate kinas 96.9 0.0099 2.5E-07 41.1 8.6 48 102-151 5-52 (204)
218 PRK07952 DNA replication prote 96.9 0.011 2.8E-07 40.7 8.8 82 99-200 95-176 (242)
219 cd01876 YihA_EngB The YihA (En 96.9 0.013 3.2E-07 40.2 9.1 143 103-284 2-164 (170)
220 PRK09354 recA recombinase A; P 96.9 0.023 5.8E-07 38.3 10.3 94 101-201 61-156 (350)
221 PRK00093 engA GTP-binding prot 96.9 0.0066 1.7E-07 42.4 7.6 161 77-278 153-330 (438)
222 PRK07764 DNA polymerase III su 96.9 0.041 1.1E-06 36.3 11.6 217 98-337 35-287 (775)
223 PRK08853 DNA polymerase III su 96.8 0.063 1.6E-06 34.9 14.9 215 98-338 36-286 (717)
224 PRK04195 replication factor C 96.8 0.043 1.1E-06 36.2 11.6 87 101-212 41-130 (403)
225 cd01898 Obg Obg subfamily. Th 96.8 0.0068 1.7E-07 42.3 7.5 144 102-283 2-163 (170)
226 pfam02421 FeoB_N Ferrous iron 96.8 0.003 7.7E-08 45.0 5.7 144 102-283 1-152 (188)
227 TIGR02928 TIGR02928 orc1/cdc6 96.8 0.029 7.4E-07 37.5 10.6 138 63-211 12-171 (383)
228 PRK12735 elongation factor Tu; 96.8 0.0038 9.7E-08 44.2 6.1 127 97-254 8-142 (396)
229 CHL00095 clpC Clp protease ATP 96.8 0.022 5.7E-07 38.3 10.0 53 101-153 201-265 (823)
230 COG1072 CoaA Panthothenate kin 96.8 0.025 6.3E-07 38.0 10.2 102 21-143 24-126 (283)
231 PRK13342 recombination factor 96.8 0.0072 1.8E-07 42.1 7.4 115 99-253 37-154 (417)
232 cd02023 UMPK Uridine monophosp 96.8 0.0016 4E-08 47.2 4.0 36 102-140 1-36 (198)
233 TIGR03345 VI_ClpV1 type VI sec 96.8 0.059 1.5E-06 35.1 12.1 24 103-126 211-234 (852)
234 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.047 1.2E-06 35.9 11.6 104 80-193 6-125 (235)
235 COG0542 clpA ATP-binding subun 96.8 0.052 1.3E-06 35.6 11.7 22 104-125 195-216 (786)
236 PRK06674 DNA polymerase III su 96.8 0.069 1.8E-06 34.6 22.2 309 97-433 35-391 (563)
237 COG2894 MinD Septum formation 96.8 0.0074 1.9E-07 42.0 7.3 37 103-140 6-42 (272)
238 PRK09270 frcK putative fructos 96.8 0.0029 7.3E-08 45.2 5.2 46 96-141 30-76 (230)
239 TIGR02903 spore_lon_C ATP-depe 96.8 0.0019 4.9E-08 46.5 4.3 31 95-126 171-201 (616)
240 PRK13976 thymidylate kinase; P 96.8 0.025 6.5E-07 37.9 10.0 114 103-223 3-133 (202)
241 PRK05632 phosphate acetyltrans 96.8 0.071 1.8E-06 34.5 12.5 21 389-409 417-438 (702)
242 cd04160 Arfrp1 Arfrp1 subfamil 96.8 0.0046 1.2E-07 43.6 6.1 96 103-238 2-98 (167)
243 cd00046 DEXDc DEAD-like helica 96.7 0.015 3.9E-07 39.6 8.7 87 103-197 3-92 (144)
244 PRK07667 uridine kinase; Provi 96.7 0.0037 9.3E-08 44.3 5.5 44 97-141 11-54 (190)
245 PRK08082 consensus 96.7 0.074 1.9E-06 34.4 17.4 89 100-194 203-296 (453)
246 TIGR01968 minD_bact septum sit 96.7 0.0014 3.6E-08 47.5 3.3 135 107-265 9-198 (272)
247 cd01897 NOG NOG1 is a nucleola 96.7 0.032 8.2E-07 37.2 10.2 145 102-283 2-160 (168)
248 PRK11034 clpA ATP-dependent Cl 96.7 0.031 7.8E-07 37.3 10.0 50 102-151 209-270 (758)
249 PRK13633 cobalt transporter AT 96.7 0.028 7.2E-07 37.6 9.8 219 99-341 36-281 (281)
250 PRK00440 rfc replication facto 96.7 0.0075 1.9E-07 42.0 6.9 27 98-125 36-62 (318)
251 PRK01184 hypothetical protein; 96.7 0.021 5.4E-07 38.6 9.1 40 101-146 2-41 (183)
252 pfam00437 GSPII_E Type II/IV s 96.7 0.0011 2.8E-08 48.4 2.5 35 101-136 140-174 (283)
253 COG1797 CobB Cobyrinic acid a, 96.7 0.036 9.1E-07 36.8 10.3 172 103-297 3-191 (451)
254 cd00880 Era_like Era (E. coli 96.7 0.0049 1.3E-07 43.4 5.8 142 105-282 1-155 (163)
255 COG2403 Predicted GTPase [Gene 96.7 0.031 7.9E-07 37.3 9.8 147 85-256 114-284 (449)
256 PRK07471 DNA polymerase III su 96.7 0.026 6.7E-07 37.8 9.3 30 97-126 36-65 (363)
257 PRK13644 cbiO cobalt transport 96.6 0.0072 1.8E-07 42.1 6.4 56 92-150 22-77 (274)
258 cd01883 EF1_alpha Eukaryotic e 96.6 0.0035 8.9E-08 44.5 4.7 131 103-253 2-150 (219)
259 PRK09518 bifunctional cytidyla 96.6 0.023 6E-07 38.2 8.9 130 101-268 280-414 (714)
260 COG3523 IcmF Type VI protein s 96.6 0.0074 1.9E-07 42.0 6.3 69 186-254 176-270 (1188)
261 pfam09439 SRPRB Signal recogni 96.6 0.0035 8.8E-08 44.5 4.6 134 99-295 3-137 (181)
262 PRK13636 cbiO cobalt transport 96.6 0.091 2.3E-06 33.7 12.9 218 99-342 31-280 (285)
263 COG0132 BioD Dethiobiotin synt 96.6 0.09 2.3E-06 33.7 11.8 166 102-272 4-199 (223)
264 CHL00176 ftsH cell division pr 96.6 0.032 8.3E-07 37.1 9.5 201 80-340 190-417 (631)
265 PRK09112 DNA polymerase III su 96.5 0.027 6.8E-07 37.7 8.8 30 97-126 42-71 (352)
266 cd02025 PanK Pantothenate kina 96.5 0.0059 1.5E-07 42.7 5.5 43 102-144 1-45 (220)
267 COG3598 RepA RecA-family ATPas 96.5 0.027 6.8E-07 37.8 8.7 91 102-192 91-203 (402)
268 cd03268 ABC_BcrA_bacitracin_re 96.5 0.026 6.6E-07 37.8 8.6 44 98-142 24-67 (208)
269 cd04105 SR_beta Signal recogni 96.5 0.0074 1.9E-07 42.0 5.8 132 102-295 2-134 (203)
270 pfam00931 NB-ARC NB-ARC domain 96.5 0.037 9.4E-07 36.7 9.3 23 99-122 18-40 (285)
271 PRK10787 DNA-binding ATP-depen 96.5 0.11 2.7E-06 33.1 11.9 108 98-206 347-486 (784)
272 smart00178 SAR Sar1p-like memb 96.5 0.012 3.1E-07 40.3 6.7 24 98-121 15-38 (184)
273 COG0486 ThdF Predicted GTPase 96.5 0.029 7.5E-07 37.5 8.7 178 76-298 195-382 (454)
274 cd03109 DTBS Dethiobiotin synt 96.5 0.039 9.9E-07 36.5 9.2 115 109-271 8-130 (134)
275 PRK03992 proteasome-activating 96.5 0.04 1E-06 36.4 9.3 198 96-342 162-375 (390)
276 PRK10436 hypothetical protein; 96.5 0.0053 1.3E-07 43.1 4.8 208 101-334 216-452 (461)
277 PRK12317 elongation factor 1-a 96.5 0.011 2.8E-07 40.7 6.4 135 98-253 4-153 (426)
278 PRK13646 cbiO cobalt transport 96.5 0.037 9.4E-07 36.7 9.1 201 92-309 27-259 (286)
279 PRK13642 cbiO cobalt transport 96.4 0.021 5.3E-07 38.6 7.7 198 92-307 27-251 (277)
280 PRK07994 DNA polymerase III su 96.4 0.11 2.9E-06 33.0 12.9 219 98-339 36-287 (643)
281 PRK08939 primosomal protein Dn 96.4 0.022 5.6E-07 38.4 7.8 86 100-207 157-242 (306)
282 cd03116 MobB Molybdenum is an 96.4 0.0057 1.5E-07 42.9 4.8 72 100-197 1-72 (159)
283 pfam02223 Thymidylate_kin Thym 96.4 0.044 1.1E-06 36.1 9.2 28 106-134 2-29 (186)
284 TIGR03575 selen_PSTK_euk L-ser 96.4 0.0039 1E-07 44.1 3.8 43 104-146 3-45 (340)
285 PRK00089 era GTP-binding prote 96.4 0.049 1.2E-06 35.8 9.4 121 99-255 7-131 (296)
286 PRK00093 engA GTP-binding prot 96.4 0.025 6.2E-07 38.0 7.9 144 102-282 3-154 (438)
287 PRK00007 elongation factor G; 96.4 0.013 3.2E-07 40.3 6.4 136 100-267 10-157 (693)
288 KOG2749 consensus 96.4 0.079 2E-06 34.2 10.4 183 96-288 100-322 (415)
289 pfam03205 MobB Molybdopterin g 96.4 0.0059 1.5E-07 42.8 4.7 38 102-140 2-40 (122)
290 cd01428 ADK Adenylate kinase ( 96.4 0.013 3.2E-07 40.2 6.4 91 103-205 2-98 (194)
291 TIGR02397 dnaX_nterm DNA polym 96.4 0.034 8.6E-07 37.0 8.5 203 72-340 20-289 (363)
292 COG0470 HolB ATPase involved i 96.4 0.027 6.8E-07 37.8 7.9 104 98-224 22-147 (325)
293 PRK12377 putative replication 96.4 0.058 1.5E-06 35.2 9.7 81 99-200 100-180 (248)
294 PRK13652 cbiO cobalt transport 96.4 0.025 6.4E-07 38.0 7.8 214 98-340 28-272 (277)
295 TIGR00313 cobQ cobyric acid sy 96.4 0.056 1.4E-06 35.3 9.5 164 103-271 1-218 (502)
296 pfam00350 Dynamin_N Dynamin fa 96.4 0.014 3.7E-07 39.8 6.5 66 183-250 100-168 (168)
297 pfam00004 AAA ATPase family as 96.3 0.041 1E-06 36.3 8.7 31 103-137 1-31 (131)
298 cd01129 PulE-GspE PulE/GspE Th 96.3 0.0081 2.1E-07 41.7 5.1 122 102-247 82-203 (264)
299 PRK13634 cbiO cobalt transport 96.3 0.048 1.2E-06 35.8 9.0 228 93-345 15-274 (276)
300 PRK10584 putative ABC transpor 96.3 0.025 6.3E-07 38.0 7.6 61 93-156 31-91 (228)
301 COG1763 MobB Molybdopterin-gua 96.3 0.013 3.4E-07 40.0 6.2 153 100-295 2-160 (161)
302 PRK06921 hypothetical protein; 96.3 0.1 2.6E-06 33.3 10.6 124 100-299 116-244 (265)
303 cd04155 Arl3 Arl3 subfamily. 96.3 0.012 3E-07 40.4 5.8 94 98-239 12-107 (173)
304 PRK13637 cbiO cobalt transport 96.3 0.036 9.1E-07 36.8 8.2 216 99-340 32-280 (287)
305 PRK00411 cdc6 cell division co 96.3 0.14 3.5E-06 32.4 14.3 136 62-210 26-167 (394)
306 TIGR03600 phage_DnaB phage rep 96.3 0.14 3.5E-06 32.3 20.1 115 100-223 194-313 (421)
307 pfam10662 PduV-EutP Ethanolami 96.3 0.023 5.8E-07 38.3 7.2 128 102-284 3-139 (143)
308 PRK10751 molybdopterin-guanine 96.3 0.0069 1.8E-07 42.2 4.5 68 102-195 4-71 (170)
309 cd01884 EF_Tu EF-Tu subfamily. 96.3 0.022 5.5E-07 38.5 7.0 123 102-253 4-131 (195)
310 PRK13650 cbiO cobalt transport 96.2 0.044 1.1E-06 36.1 8.5 215 101-340 31-272 (276)
311 PRK05636 replicative DNA helic 96.2 0.14 3.7E-06 32.2 16.2 114 100-223 267-385 (507)
312 cd03244 ABCC_MRP_domain2 Domai 96.2 0.076 1.9E-06 34.3 9.7 46 93-141 25-70 (221)
313 PTZ00141 elongation factor 1 a 96.2 0.012 3.1E-07 40.3 5.6 134 99-253 6-158 (443)
314 PRK00741 prfC peptide chain re 96.2 0.05 1.3E-06 35.7 8.7 152 99-278 9-175 (526)
315 PRK11247 ssuB aliphatic sulfon 96.2 0.058 1.5E-06 35.2 9.0 40 95-135 33-72 (257)
316 PRK00652 lpxK tetraacyldisacch 96.2 0.023 6E-07 38.2 7.0 172 107-309 58-251 (334)
317 PRK05563 DNA polymerase III su 96.2 0.15 3.7E-06 32.1 19.2 214 97-338 35-286 (541)
318 cd03291 ABCC_CFTR1 The CFTR su 96.2 0.052 1.3E-06 35.6 8.8 188 95-303 58-265 (282)
319 TIGR01188 drrA daunorubicin re 96.2 0.0029 7.4E-08 45.1 2.3 56 92-148 13-68 (343)
320 CHL00071 tufA elongation facto 96.2 0.015 3.7E-07 39.7 5.9 127 96-253 7-141 (409)
321 PRK09554 feoB ferrous iron tra 96.2 0.05 1.3E-06 35.7 8.6 146 100-283 3-160 (772)
322 KOG0734 consensus 96.2 0.069 1.8E-06 34.6 9.3 181 79-308 316-518 (752)
323 cd04167 Snu114p Snu114p subfam 96.2 0.041 1.1E-06 36.3 8.2 126 102-252 2-135 (213)
324 TIGR01448 recD_rel helicase, R 96.2 0.033 8.3E-07 37.1 7.6 197 99-308 364-578 (769)
325 COG1084 Predicted GTPase [Gene 96.2 0.13 3.2E-06 32.6 10.6 147 97-281 166-325 (346)
326 cd00267 ABC_ATPase ABC (ATP-bi 96.2 0.025 6.5E-07 37.9 7.0 101 100-212 25-126 (157)
327 TIGR03598 GTPase_YsxC ribosome 96.2 0.08 2E-06 34.1 9.6 121 97-257 16-146 (179)
328 PRK00049 elongation factor Tu; 96.2 0.024 6E-07 38.2 6.9 126 98-253 9-142 (397)
329 PRK12740 elongation factor G; 96.2 0.097 2.5E-06 33.5 10.0 64 182-252 58-124 (670)
330 PRK13185 chlL protochlorophyll 96.2 0.0089 2.3E-07 41.4 4.7 159 101-271 3-202 (269)
331 PRK07132 DNA polymerase III su 96.2 0.084 2.2E-06 33.9 9.6 202 97-343 17-225 (303)
332 PRK13632 cbiO cobalt transport 96.2 0.056 1.4E-06 35.3 8.7 43 98-141 34-76 (273)
333 pfam02606 LpxK Tetraacyldisacc 96.2 0.026 6.5E-07 37.9 7.0 199 108-336 45-267 (318)
334 PRK08694 consensus 96.2 0.16 4E-06 31.9 11.6 114 101-223 219-338 (468)
335 cd03228 ABCC_MRP_Like The MRP 96.1 0.051 1.3E-06 35.6 8.4 47 94-141 22-68 (171)
336 PRK08760 replicative DNA helic 96.1 0.16 4.1E-06 31.8 16.3 112 101-223 230-347 (476)
337 PRK07940 DNA polymerase III su 96.1 0.16 4.1E-06 31.8 18.9 137 97-242 36-176 (395)
338 COG1102 Cmk Cytidylate kinase 96.1 0.015 3.8E-07 39.7 5.6 76 102-195 2-82 (179)
339 PRK13635 cbiO cobalt transport 96.1 0.071 1.8E-06 34.5 9.0 214 99-341 32-276 (279)
340 PRK13649 cbiO cobalt transport 96.1 0.045 1.2E-06 36.0 8.0 197 98-309 31-258 (280)
341 COG4586 ABC-type uncharacteriz 96.1 0.0017 4.2E-08 47.0 0.6 173 92-281 42-238 (325)
342 TIGR03594 GTPase_EngA ribosome 96.1 0.039 1E-06 36.5 7.7 164 76-277 149-328 (429)
343 pfam00485 PRK Phosphoribulokin 96.1 0.0049 1.3E-07 43.4 3.0 37 102-139 1-37 (196)
344 KOG0920 consensus 96.1 0.063 1.6E-06 34.9 8.7 136 100-241 188-339 (924)
345 PRK11160 cysteine/glutathione 96.1 0.044 1.1E-06 36.1 7.9 32 390-421 423-455 (575)
346 PRK11176 lipid transporter ATP 96.1 0.092 2.4E-06 33.7 9.5 38 101-139 369-406 (581)
347 cd03266 ABC_NatA_sodium_export 96.1 0.055 1.4E-06 35.4 8.3 49 93-142 24-72 (218)
348 PRK13647 cbiO cobalt transport 96.1 0.06 1.5E-06 35.1 8.5 191 99-308 30-249 (273)
349 cd03247 ABCC_cytochrome_bd The 96.1 0.06 1.5E-06 35.1 8.5 48 94-142 22-69 (178)
350 PRK13974 thymidylate kinase; P 96.1 0.083 2.1E-06 34.0 9.2 27 102-128 5-31 (212)
351 PRK00091 miaA tRNA delta(2)-is 96.1 0.024 6E-07 38.2 6.3 156 99-274 3-180 (304)
352 pfam07724 AAA_2 AAA domain (Cd 96.0 0.065 1.7E-06 34.8 8.5 85 101-198 4-90 (168)
353 PRK00454 engB GTPase EngB; Rev 96.0 0.13 3.3E-06 32.5 10.1 146 97-284 22-189 (196)
354 PRK07429 phosphoribulokinase; 96.0 0.013 3.4E-07 40.1 5.0 67 97-166 5-95 (331)
355 COG0125 Tmk Thymidylate kinase 96.0 0.058 1.5E-06 35.2 8.2 122 100-224 3-139 (208)
356 TIGR01241 FtsH_fam ATP-depende 96.0 0.01 2.6E-07 40.9 4.4 198 83-340 75-300 (505)
357 PTZ00088 adenylate kinase 1; P 96.0 0.005 1.3E-07 43.3 2.8 41 102-147 2-42 (225)
358 cd03111 CpaE_like This protein 96.0 0.013 3.2E-07 40.2 4.8 88 102-238 1-91 (106)
359 PRK13640 cbiO cobalt transport 96.0 0.079 2E-06 34.2 8.9 221 98-341 32-280 (283)
360 pfam00270 DEAD DEAD/DEAH box h 96.0 0.14 3.5E-06 32.3 10.1 88 103-197 17-108 (167)
361 PRK03003 engA GTP-binding prot 96.0 0.036 9.2E-07 36.8 7.1 132 99-267 37-172 (474)
362 pfam05621 TniB Bacterial TniB 96.0 0.18 4.6E-06 31.4 10.7 200 79-308 46-266 (302)
363 COG0610 Type I site-specific r 96.0 0.18 4.7E-06 31.4 10.8 70 70-148 249-319 (962)
364 cd04166 CysN_ATPS CysN_ATPS su 96.0 0.015 3.9E-07 39.6 5.1 129 103-252 2-142 (208)
365 COG0529 CysC Adenylylsulfate k 96.0 0.013 3.3E-07 40.2 4.7 49 95-144 18-66 (197)
366 PRK13643 cbiO cobalt transport 96.0 0.014 3.7E-07 39.8 4.9 227 93-342 27-282 (288)
367 PRK05342 clpX ATP-dependent pr 96.0 0.055 1.4E-06 35.3 7.9 198 45-298 60-267 (411)
368 cd03238 ABC_UvrA The excision 96.0 0.1 2.6E-06 33.3 9.2 60 98-159 19-78 (176)
369 cd01890 LepA LepA subfamily. 96.0 0.047 1.2E-06 35.9 7.5 122 102-252 2-131 (179)
370 cd03278 ABC_SMC_barmotin Barmo 95.9 0.11 2.9E-06 33.0 9.4 31 91-124 16-46 (197)
371 PRK00279 adk adenylate kinase; 95.9 0.043 1.1E-06 36.2 7.3 90 102-203 2-97 (215)
372 TIGR01005 eps_transp_fam exopo 95.9 0.15 3.9E-06 32.0 10.1 147 98-256 560-743 (778)
373 TIGR00176 mobB molybdopterin-g 95.9 0.0088 2.2E-07 41.4 3.7 117 102-255 1-123 (165)
374 cd03289 ABCC_CFTR2 The CFTR su 95.9 0.089 2.3E-06 33.8 8.9 39 99-139 29-67 (275)
375 pfam00025 Arf ADP-ribosylation 95.9 0.014 3.5E-07 40.0 4.7 107 98-252 12-127 (174)
376 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.9 0.074 1.9E-06 34.4 8.4 63 94-157 24-86 (218)
377 PRK13645 cbiO cobalt transport 95.9 0.13 3.2E-06 32.6 9.6 224 93-342 32-289 (289)
378 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.045 1.2E-06 36.0 7.3 79 101-210 39-117 (226)
379 TIGR01085 murE UDP-N-acetylmur 95.9 0.023 5.9E-07 38.2 5.8 70 74-146 60-131 (494)
380 PRK08058 DNA polymerase III su 95.9 0.16 4E-06 31.9 10.0 136 97-240 25-164 (329)
381 PRK08769 DNA polymerase III su 95.9 0.12 3.1E-06 32.7 9.4 43 76-126 10-52 (319)
382 COG1484 DnaC DNA replication p 95.9 0.14 3.5E-06 32.3 9.6 81 99-200 104-184 (254)
383 pfam05970 DUF889 PIF1 helicase 95.9 0.017 4.2E-07 39.4 4.9 110 107-222 1-120 (418)
384 PRK05564 DNA polymerase III su 95.9 0.033 8.3E-07 37.1 6.4 30 97-126 23-52 (313)
385 cd01879 FeoB Ferrous iron tran 95.9 0.012 2.9E-07 40.5 4.1 141 105-283 1-149 (158)
386 PRK13639 cbiO cobalt transport 95.9 0.21 5.4E-06 30.9 12.9 218 98-341 26-273 (275)
387 COG0572 Udk Uridine kinase [Nu 95.8 0.011 2.8E-07 40.7 3.9 42 98-142 6-47 (218)
388 cd03254 ABCC_Glucan_exporter_l 95.8 0.14 3.5E-06 32.3 9.5 41 98-139 27-67 (229)
389 cd03369 ABCC_NFT1 Domain 2 of 95.8 0.16 4.1E-06 31.8 9.8 41 99-140 33-73 (207)
390 KOG0926 consensus 95.8 0.061 1.6E-06 35.0 7.6 108 102-209 273-399 (1172)
391 CHL00072 chlL photochlorophyll 95.8 0.014 3.6E-07 39.8 4.4 158 102-271 2-200 (271)
392 PRK06762 hypothetical protein; 95.8 0.035 8.9E-07 36.9 6.3 93 100-210 2-94 (166)
393 PRK13657 cyclic beta-1,2-gluca 95.8 0.17 4.3E-06 31.6 9.8 128 101-236 362-511 (585)
394 cd01881 Obg_like The Obg-like 95.8 0.042 1.1E-06 36.3 6.7 91 183-275 43-159 (176)
395 cd03267 ABC_NatA_like Similar 95.8 0.012 3.1E-07 40.3 3.9 47 93-140 40-86 (236)
396 cd03245 ABCC_bacteriocin_expor 95.8 0.075 1.9E-06 34.3 7.9 44 94-138 24-67 (220)
397 PRK13641 cbiO cobalt transport 95.8 0.014 3.5E-07 40.0 4.1 229 93-344 28-284 (286)
398 PRK10790 putative multidrug tr 95.8 0.19 4.9E-06 31.2 9.9 41 389-430 422-462 (593)
399 PRK11629 lolD lipoprotein tran 95.8 0.051 1.3E-06 35.6 7.0 50 92-144 29-78 (233)
400 PRK12739 elongation factor G; 95.7 0.23 5.9E-06 30.6 14.3 136 99-267 9-156 (693)
401 cd03248 ABCC_TAP TAP, the Tran 95.7 0.16 4.1E-06 31.8 9.5 45 93-140 35-79 (226)
402 PRK06749 replicative DNA helic 95.7 0.23 5.9E-06 30.6 11.8 114 100-223 186-307 (428)
403 cd02033 BchX Chlorophyllide re 95.7 0.026 6.5E-07 37.9 5.4 167 95-271 26-235 (329)
404 COG1100 GTPase SAR1 and relate 95.7 0.028 7.1E-07 37.6 5.6 90 101-233 6-97 (219)
405 PRK10636 putative ABC transpor 95.7 0.13 3.3E-06 32.5 9.0 45 100-147 338-382 (638)
406 PRK01906 tetraacyldisaccharide 95.7 0.047 1.2E-06 35.9 6.7 95 108-225 66-177 (339)
407 cd01882 BMS1 Bms1. Bms1 is an 95.7 0.057 1.5E-06 35.2 7.1 43 96-138 35-81 (225)
408 KOG2004 consensus 95.7 0.18 4.5E-06 31.5 9.6 75 100-190 438-512 (906)
409 PRK10789 putative multidrug tr 95.7 0.22 5.5E-06 30.8 10.0 37 102-139 343-379 (569)
410 pfam00406 ADK Adenylate kinase 95.7 0.023 5.9E-07 38.3 5.0 102 105-217 1-105 (186)
411 PRK02496 adk adenylate kinase; 95.7 0.042 1.1E-06 36.2 6.4 40 102-146 3-42 (185)
412 PRK05506 bifunctional sulfate 95.7 0.02 5.1E-07 38.7 4.7 47 96-143 439-485 (613)
413 PRK09518 bifunctional cytidyla 95.7 0.15 3.7E-06 32.2 9.1 161 77-275 430-605 (714)
414 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.026 6.5E-07 37.9 5.2 103 93-221 21-123 (144)
415 PRK13766 Hef nuclease; Provisi 95.7 0.25 6.3E-06 30.4 12.1 120 103-238 32-158 (764)
416 cd00268 DEADc DEAD-box helicas 95.7 0.19 4.9E-06 31.2 9.6 127 103-236 39-195 (203)
417 TIGR03594 GTPase_EngA ribosome 95.7 0.19 4.8E-06 31.3 9.6 144 102-282 1-151 (429)
418 PRK07560 elongation factor EF- 95.6 0.098 2.5E-06 33.5 8.0 137 80-252 8-151 (730)
419 cd04159 Arl10_like Arl10-like 95.6 0.056 1.4E-06 35.3 6.8 86 103-234 2-87 (159)
420 PRK09860 putative alcohol dehy 95.6 0.11 2.9E-06 33.0 8.3 93 98-199 7-103 (383)
421 PRK05201 hslU ATP-dependent pr 95.6 0.056 1.4E-06 35.3 6.7 25 99-123 49-73 (442)
422 COG4555 NatA ABC-type Na+ tran 95.6 0.012 3.2E-07 40.3 3.4 167 93-279 21-212 (245)
423 PRK10624 L-1,2-propanediol oxi 95.6 0.11 2.7E-06 33.2 8.1 85 110-198 13-100 (381)
424 cd00878 Arf_Arl Arf (ADP-ribos 95.6 0.034 8.7E-07 36.9 5.6 132 103-281 2-150 (158)
425 PRK12736 elongation factor Tu; 95.6 0.0043 1.1E-07 43.8 0.9 130 96-254 7-142 (394)
426 PRK11701 phnK phosphonates tra 95.6 0.11 2.7E-06 33.1 8.1 53 92-147 26-83 (258)
427 cd03222 ABC_RNaseL_inhibitor T 95.6 0.041 1E-06 36.3 5.9 89 101-209 26-114 (177)
428 cd01130 VirB11-like_ATPase Typ 95.6 0.016 4.1E-07 39.4 3.8 78 102-190 27-107 (186)
429 pfam03215 Rad17 Rad17 cell cyc 95.5 0.037 9.4E-07 36.7 5.6 49 76-132 29-79 (490)
430 cd04157 Arl6 Arl6 subfamily. 95.5 0.022 5.5E-07 38.5 4.4 79 103-225 2-80 (162)
431 cd03252 ABCC_Hemolysin The ABC 95.5 0.14 3.6E-06 32.3 8.5 43 98-141 26-68 (237)
432 cd04150 Arf1_5_like Arf1-Arf5- 95.5 0.021 5.4E-07 38.5 4.3 102 102-251 2-112 (159)
433 cd03240 ABC_Rad50 The catalyti 95.5 0.013 3.4E-07 40.1 3.2 30 91-123 16-45 (204)
434 cd03257 ABC_NikE_OppD_transpor 95.5 0.038 9.6E-07 36.6 5.5 62 94-157 25-86 (228)
435 COG1061 SSL2 DNA or RNA helica 95.5 0.19 4.8E-06 31.3 9.1 90 101-197 56-160 (442)
436 cd01889 SelB_euk SelB subfamil 95.5 0.028 7.2E-07 37.6 4.9 125 103-252 3-132 (192)
437 PRK05917 DNA polymerase III su 95.5 0.28 7.2E-06 29.9 14.7 30 97-126 16-45 (290)
438 cd04154 Arl2 Arl2 subfamily. 95.5 0.026 6.8E-07 37.8 4.7 135 99-281 13-165 (173)
439 COG0466 Lon ATP-dependent Lon 95.5 0.29 7.3E-06 29.9 12.9 107 99-206 349-488 (782)
440 PRK11545 gntK gluconate kinase 95.5 0.02 5E-07 38.8 4.0 53 96-159 4-57 (177)
441 cd03225 ABC_cobalt_CbiO_domain 95.4 0.052 1.3E-06 35.5 6.1 41 99-140 26-66 (211)
442 TIGR00382 clpX ATP-dependent C 95.4 0.01 2.6E-07 40.9 2.4 240 101-446 153-419 (452)
443 COG1474 CDC6 Cdc6-related prot 95.4 0.19 4.8E-06 31.3 8.9 97 98-199 40-139 (366)
444 PRK11448 hsdR type I restricti 95.4 0.0063 1.6E-07 42.5 1.3 93 101-196 437-555 (1126)
445 TIGR00631 uvrb excinuclease AB 95.4 0.0045 1.1E-07 43.7 0.5 81 100-195 30-142 (667)
446 cd03215 ABC_Carb_Monos_II This 95.4 0.07 1.8E-06 34.6 6.6 46 92-140 20-65 (182)
447 PRK10037 cell division protein 95.4 0.03 7.5E-07 37.4 4.7 39 101-140 2-41 (250)
448 PRK13651 cobalt transporter AT 95.4 0.039 1E-06 36.5 5.3 217 99-341 32-296 (304)
449 cd03246 ABCC_Protease_Secretio 95.4 0.17 4.2E-06 31.7 8.4 46 93-141 23-68 (173)
450 cd03265 ABC_DrrA DrrA is the A 95.4 0.043 1.1E-06 36.2 5.4 48 93-141 19-66 (220)
451 PRK07933 thymidylate kinase; V 95.3 0.26 6.7E-06 30.2 9.4 34 102-136 2-35 (213)
452 COG3854 SpoIIIAA ncharacterize 95.3 0.11 2.8E-06 33.1 7.3 99 101-213 138-241 (308)
453 PRK13585 1-(5-phosphoribosyl)- 95.3 0.21 5.5E-06 30.8 8.9 187 117-338 33-239 (240)
454 cd03230 ABC_DR_subfamily_A Thi 95.3 0.059 1.5E-06 35.1 6.0 46 95-141 21-66 (173)
455 cd03299 ABC_ModC_like Archeal 95.3 0.099 2.5E-06 33.4 7.1 189 92-299 19-234 (235)
456 pfam09848 DUF2075 Uncharacteri 95.3 0.069 1.8E-06 34.6 6.3 114 101-223 2-123 (348)
457 PTZ00110 helicase; Provisional 95.3 0.25 6.4E-06 30.3 9.2 129 103-237 222-382 (602)
458 PRK10418 nikD nickel transport 95.3 0.076 1.9E-06 34.3 6.5 27 99-125 28-54 (254)
459 TIGR02640 gas_vesic_GvpN gas v 95.3 0.027 6.8E-07 37.8 4.1 166 97-319 20-208 (265)
460 COG2019 AdkA Archaeal adenylat 95.3 0.048 1.2E-06 35.8 5.5 174 100-295 4-183 (189)
461 KOG1051 consensus 95.3 0.33 8.4E-06 29.4 10.9 119 98-231 589-716 (898)
462 PTZ00336 elongation factor 1-a 95.3 0.034 8.6E-07 37.0 4.6 131 101-252 8-157 (449)
463 COG1245 Predicted ATPase, RNas 95.3 0.12 3.1E-06 32.7 7.5 24 101-124 101-124 (591)
464 PHA00729 NTP-binding motif con 95.2 0.046 1.2E-06 36.0 5.3 97 98-213 15-116 (228)
465 PRK13648 cbiO cobalt transport 95.2 0.17 4.4E-06 31.6 8.2 39 100-139 35-73 (269)
466 pfam00071 Ras Ras family. Incl 95.2 0.043 1.1E-06 36.2 5.1 108 103-252 2-116 (162)
467 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.2 0.14 3.5E-06 32.3 7.7 45 93-140 24-68 (238)
468 TIGR02538 type_IV_pilB type IV 95.2 0.01 2.5E-07 41.0 1.8 115 98-243 323-445 (577)
469 cd03250 ABCC_MRP_domain1 Domai 95.2 0.34 8.6E-06 29.3 9.6 41 98-138 29-74 (204)
470 cd03223 ABCD_peroxisomal_ALDP 95.2 0.12 3.2E-06 32.7 7.4 31 99-129 26-56 (166)
471 COG1120 FepC ABC-type cobalami 95.2 0.015 3.9E-07 39.6 2.7 52 94-146 22-73 (258)
472 cd03292 ABC_FtsE_transporter F 95.2 0.096 2.4E-06 33.5 6.8 61 93-157 22-82 (214)
473 PRK10261 glutathione transport 95.2 0.07 1.8E-06 34.6 6.0 32 92-125 36-67 (623)
474 TIGR03410 urea_trans_UrtE urea 95.2 0.11 2.8E-06 33.1 7.0 51 98-149 24-74 (230)
475 cd03261 ABC_Org_Solvent_Resist 95.2 0.19 4.8E-06 31.3 8.2 62 92-157 20-81 (235)
476 cd03218 ABC_YhbG The ABC trans 95.1 0.016 4.1E-07 39.4 2.7 54 93-149 21-74 (232)
477 COG1131 CcmA ABC-type multidru 95.1 0.023 5.9E-07 38.2 3.4 43 98-141 29-71 (293)
478 PRK13545 tagH teichoic acids e 95.1 0.17 4.3E-06 31.6 7.8 163 95-278 45-221 (549)
479 cd03251 ABCC_MsbA MsbA is an e 95.1 0.14 3.6E-06 32.3 7.4 41 98-139 26-66 (234)
480 TIGR02237 recomb_radB DNA repa 95.1 0.19 4.9E-06 31.3 8.1 94 101-197 13-117 (223)
481 cd03233 ABC_PDR_domain1 The pl 95.1 0.053 1.3E-06 35.5 5.1 123 94-231 27-153 (202)
482 cd03294 ABC_Pro_Gly_Bertaine T 95.0 0.16 4.1E-06 31.8 7.6 63 92-157 44-106 (269)
483 PRK10851 sulfate/thiosulfate t 95.0 0.18 4.7E-06 31.4 7.9 42 99-141 27-68 (352)
484 PRK10419 nikE nickel transport 95.0 0.31 7.9E-06 29.7 9.0 81 92-177 32-113 (266)
485 PRK12339 2-phosphoglycerate ki 95.0 0.019 4.9E-07 38.8 2.9 46 99-153 2-47 (197)
486 cd03288 ABCC_SUR2 The SUR doma 95.0 0.17 4.4E-06 31.6 7.7 42 100-142 47-88 (257)
487 COG1160 Predicted GTPases [Gen 95.0 0.32 8.1E-06 29.5 9.1 166 76-279 154-337 (444)
488 pfam04851 ResIII Type III rest 95.0 0.041 1E-06 36.4 4.5 42 103-148 21-62 (103)
489 KOG1533 consensus 95.0 0.026 6.7E-07 37.8 3.5 38 101-139 3-40 (290)
490 pfam05729 NACHT NACHT domain. 95.0 0.025 6.3E-07 38.0 3.3 26 101-126 1-26 (165)
491 COG4088 Predicted nucleotide k 95.0 0.05 1.3E-06 35.7 4.9 37 102-139 3-39 (261)
492 TIGR03522 GldA_ABC_ATP gliding 95.0 0.018 4.6E-07 39.0 2.6 47 93-140 21-67 (301)
493 PRK05124 cysN sulfate adenylyl 95.0 0.046 1.2E-06 36.0 4.6 135 98-253 25-173 (475)
494 cd01987 USP_OKCHK USP domain i 95.0 0.36 9.1E-06 29.2 9.2 96 105-204 3-106 (124)
495 PRK13537 lipooligosaccharide t 95.0 0.017 4.2E-07 39.4 2.4 45 93-138 24-68 (304)
496 cd03227 ABC_Class2 ABC-type Cl 94.9 0.16 4E-06 31.9 7.3 25 99-123 20-44 (162)
497 PRK13409 putative ATPase RIL; 94.9 0.053 1.3E-06 35.5 4.9 33 97-129 96-128 (590)
498 TIGR00708 cobA cob(I)alamin ad 94.9 0.31 7.8E-06 29.7 8.8 135 98-235 4-167 (191)
499 PRK06761 hypothetical protein; 94.9 0.049 1.2E-06 35.8 4.7 41 102-143 4-45 (281)
500 KOG1969 consensus 94.9 0.08 2.1E-06 34.1 5.8 50 100-153 326-375 (877)
No 1
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=100.00 E-value=0 Score=1281.49 Aligned_cols=428 Identities=54% Similarity=0.851 Sum_probs=422.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 40377999999987428887898999999999999998524696999999999999983031112699899999999999
Q gi|254780711|r 2 FDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDE 81 (461)
Q Consensus 2 f~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~e 81 (461)
||+|+++|+++|++|+++++|||+||+++++|||+||||||||+.||++|+++|++|+.|++|+++++|+|+++||||||
T Consensus 1 fe~Ls~~l~~~~~~L~~~~~itE~~i~~al~EiR~ALLeADVnl~VvK~Fi~~V~ekA~G~eV~~~~~P~Qq~iKIV~eE 80 (439)
T TIGR00959 1 FESLSERLQRIFKKLSGKGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80 (439)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEHHHHHH
T ss_conf 90157899999985117777588999999999999887731576899999998888752254412678020120224689
Q ss_pred HHHHHCCC---CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH-HHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99871877---4210002588418996234433346889999999-9861489507820542210047799998510347
Q gi|254780711|r 82 LVEVLGKE---SIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYH-LKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV 157 (461)
Q Consensus 82 L~~lLg~~---~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~-~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v 157 (461)
|+++||.+ +.+|.+..++|+||||||||||||||||||||+| +++++++||+|||||+|||||+|||+++++++||
T Consensus 81 L~~~LG~~~~E~~~L~~~~~~P~vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~gV 160 (439)
T TIGR00959 81 LVAILGGKGRESAELKLAEKRPTVILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQVGV 160 (439)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99851666732567555678683899731378857889999999999986389703403210347899999997675288
Q ss_pred CCCC-CCCCCH---HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH
Q ss_conf 4222-332103---689999999999741588699833442221124689999998513851100031011122568888
Q gi|254780711|r 158 DTLE-VIPEQS---PEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA 233 (461)
Q Consensus 158 ~~~~-~~~~~d---p~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a 233 (461)
|||. .+.+++ |++||++|+++|+.++||+||||||||+|+|+.||+||..|+++++|+|||||+|||+||||+++|
T Consensus 161 pvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTAGRL~ID~~LM~EL~~iK~~~nP~EiLlVvDaM~GQdAvn~A 240 (439)
T TIGR00959 161 PVFAHLGKGQSPDDPVEIARQALEEAKENGFDVVIVDTAGRLQIDEELMEELAEIKEILNPDEILLVVDAMTGQDAVNTA 240 (439)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHCCHHHHHHHH
T ss_conf 71100478889887789999999999974897899726751255599999999998886887054122010216999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 98876358440776411576633036777888478730261586723210013688998773586278899987421126
Q gi|254780711|r 234 RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNE 313 (461)
Q Consensus 234 ~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~ 313 (461)
++||+.+++||+|+||||||||||+|||+++.||+||+|||||||++|||+|||||+|+||||||||+||||||++++|+
T Consensus 241 ~~F~e~lgltG~vltK~DGDaRGGAALS~~~~tg~PIKFiG~GEK~~dLe~FhP~R~A~RILGMGDv~SLvEKA~~~~D~ 320 (439)
T TIGR00959 241 KTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIEDLEPFHPDRMASRILGMGDVLSLVEKAQEVVDE 320 (439)
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCH
T ss_conf 86366001354788547566057899999999689618884177723312467478986323655223699999985188
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCC-CHHHHHHHHHHHHCCCHHHHCCCC
Q ss_conf 7899888653104637999999999985114889999987313442343231116-788888999997458987860841
Q gi|254780711|r 314 KQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSF-DDKTINHHIAIIASMTKEERANPS 392 (461)
Q Consensus 314 ~~~~~l~~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~-~e~~lk~~~aII~SMT~~Er~~P~ 392 (461)
++++++++|+.+|+||||||++||++|+|||||++||+||||++++.....+.+. +|++|+|++|||+||||+||+||+
T Consensus 321 ~~a~~~~~K~~~~~FdleDfl~Ql~~~~KMG~l~~L~~MiPG~g~~~~~~~~~~~l~e~~~~~~~AiI~SMT~~ER~NP~ 400 (439)
T TIGR00959 321 EEAKKLAEKMLKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGMKPSLKDIDLLDEKQLKRIEAIISSMTPEERRNPK 400 (439)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHH
T ss_conf 99999999863058898999999999972279035888602202443357767677699999999877258877701925
Q ss_pred CCC--HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 133--5789997232667989999999999999999998
Q gi|254780711|r 393 IIK--HSRKKRIAAGSGTNAAKINKLLKLHRQVAEMMHS 429 (461)
Q Consensus 393 ll~--~SR~~RIA~GSG~~v~eVn~Llk~f~~m~kmmk~ 429 (461)
||| +|||+|||+|||+|++|||+|||+|+||++|||+
T Consensus 401 iln~~~SRrkRIA~GSG~~v~dvNkLiK~f~qm~~~Mk~ 439 (439)
T TIGR00959 401 ILNKDPSRRKRIAAGSGTTVQDVNKLIKRFEQMKKMMKK 439 (439)
T ss_pred HHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 435798713789600799799999998629999998329
No 2
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=1158.55 Aligned_cols=437 Identities=52% Similarity=0.813 Sum_probs=425.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 94037799999998742888789899999999999999852469699999999999998303111269989999999999
Q gi|254780711|r 1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD 80 (461)
Q Consensus 1 Mf~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~ 80 (461)
||++|+++|++++++|++++++||++|+++++|||+|||+||||++||++|+++|++++++++++++++|+|++++|||+
T Consensus 1 m~e~L~~~l~~~~~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~e 80 (451)
T COG0541 1 MFESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYE 80 (451)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 94789999999999863778677999999999999999964446899999999999986146678889989999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99987187742100025884189962344333468899999999861489507820542210047799998510347422
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL 160 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~ 160 (461)
||+++||+++.++.+..++|+||||||||||||||||||||+||++ +++||++||||||||||+|||+++|++++||||
T Consensus 81 ELv~llG~~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 81 ELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 9999848887665037899858999815679748689999999997-499458985056786899999999986098531
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf 23321036899999999997415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r 161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240 (461)
Q Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~ 240 (461)
+...+.||++|+++|+++|+.+.||+||||||||||+|++||+||++|+++++|+|++||+|||+||+|+++|++||+++
T Consensus 160 ~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l 239 (451)
T COG0541 160 GSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL 239 (451)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 67788997999999999999749988999688733030999999999985539874899876444567899999986626
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84407764115766330367778884787302615867232100136889987735862788999874211267899888
Q gi|254780711|r 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTA 320 (461)
Q Consensus 241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~ 320 (461)
++||||+||+|||||||+|||++++||+||+||||||+++|||+|||+|||||||||||++||+|++++.+|++++++++
T Consensus 240 ~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~ 319 (451)
T COG0541 240 GITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLA 319 (451)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98649997146787622888569987898599745887354777495889998537320999999999865699999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHH
Q ss_conf 65310463799999999998511488999998731344234323111678888899999745898786084113357899
Q gi|254780711|r 321 KKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKK 400 (461)
Q Consensus 321 ~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~ 400 (461)
+|+.+|+|||+|||+|+++|+||||++++++||||++ +.....+.+.+|++++||+|||+|||++||+||++||+||++
T Consensus 320 ~kl~~g~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~-~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP~ii~~SR~r 398 (451)
T COG0541 320 EKLKKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGMG-MKDSDKDIELDEKKLKRIEAIIDSMTPEERENPDIINASRKR 398 (451)
T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCC-CCCCHHHHHCHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHH
T ss_conf 9998499789999999999873388889997588988-878523232119999879999970899886193202758888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 972326679899999999999999999986068862017
Q gi|254780711|r 401 RIAAGSGTNAAKINKLLKLHRQVAEMMHSTQGLGGNALT 439 (461)
Q Consensus 401 RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~~~~~~~~~~ 439 (461)
|||+|||++++|||+|||||++|++|||+|+++++...+
T Consensus 399 RIA~GSG~sv~dVn~Llkq~~~m~~mmk~~~~~~~~~~~ 437 (451)
T COG0541 399 RIARGSGTSVQDVNKLLKQFKQMKKMMKKMSGGGGKGKM 437 (451)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 988148998899999999999999999997477870011
No 3
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=0 Score=1144.95 Aligned_cols=441 Identities=47% Similarity=0.748 Sum_probs=427.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 94037799999998742888789899999999999999852469699999999999998303111269989999999999
Q gi|254780711|r 1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD 80 (461)
Q Consensus 1 Mf~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~ 80 (461)
||++|+++|+++|++|+++++|||++|+++|+||++|||+|||+++||++|+++|++++++++++++++|.++++++||+
T Consensus 1 Mf~~Ls~~l~~~~~~l~g~~~lte~~i~~~lrEIr~ALLeADV~~~vvk~~i~~vke~~~g~~v~~~l~p~q~i~kiv~~ 80 (453)
T PRK10867 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRN 80 (453)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 93788899999999714998778999999999999999975688799999999999996335135789889999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99987187742100025884189962344333468899999999861489507820542210047799998510347422
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL 160 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~ 160 (461)
||+++||+...++++.+++|+||||||||||||||||||||+||+++++++|++||||||||||+|||++||++++||||
T Consensus 81 eL~~lLg~~~~~l~~~~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~ 160 (453)
T PRK10867 81 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (453)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99998588876663378999699997468885185899999999973898379855887705899999999985198043
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf 23321036899999999997415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r 161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240 (461)
Q Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~ 240 (461)
....++||++|+++|+++|+.++||+||||||||+|+|++||+||++|.++++|+|++||+||++||+|++||++|++++
T Consensus 161 ~~~~~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~F~~~~ 240 (453)
T PRK10867 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240 (453)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 67889988999999999999779999999787601210888999999987637871379743223566899999999855
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84407764115766330367778884787302615867232100136889987735862788999874211267899888
Q gi|254780711|r 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTA 320 (461)
Q Consensus 241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~ 320 (461)
++||+|+||+|||||||+|||++++|++||+|||+||++||||+|||+|||+|||||||+++|+|++++.+|++++++++
T Consensus 241 ~~~gvIlTKlDgdarGG~alS~~~~t~~PI~FiG~GEk~ddle~F~p~r~asRILGmGDi~~Lvek~~~~~d~~~~~~~~ 320 (453)
T PRK10867 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLA 320 (453)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98707875046787613898999997869678866998245887684899998618987899999999875088999999
Q ss_pred HHHHCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHH
Q ss_conf 653104-6379999999999851148899999873134423432311167888889999974589878608411335789
Q gi|254780711|r 321 KKIAKG-KFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRK 399 (461)
Q Consensus 321 ~k~~~g-~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~ 399 (461)
+|+++| +|||+|||+|+++|+||||++++|+||||+++++... ..+.+++.++||+|||+|||++||+||++||+||+
T Consensus 321 ~k~~~g~~F~l~D~~~Q~~~i~kmG~l~~il~miPG~~~~~~~~-~~~~~~~~~~~~~aii~SMT~~Er~~p~il~~SR~ 399 (453)
T PRK10867 321 SKLKKGDGFDLNDFLEQLKQMKNMGGMASLMGKLPGMGQLPDNV-KSQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRK 399 (453)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHH-HHCCCHHHHHHHHHHHHCCCHHHHHCCCCCCHHHH
T ss_conf 99870698569999999999974577999997588965334555-61321778988999996489998739501133599
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 9972326679899999999999999999986068862017999
Q gi|254780711|r 400 KRIAAGSGTNAAKINKLLKLHRQVAEMMHSTQGLGGNALTQQI 442 (461)
Q Consensus 400 ~RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~~~~~~~~~~~~~ 442 (461)
+|||+|||++++|||+|||||++|++|||+|++++..++|+.|
T Consensus 400 ~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m~k~~~~~~m~~m 442 (453)
T PRK10867 400 RRIAAGSGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRGM 442 (453)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 9987569989999999999999999999987036878998753
No 4
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=0 Score=1095.14 Aligned_cols=429 Identities=38% Similarity=0.583 Sum_probs=407.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 94037799999998742888789899999999999999852469699999999999998303111269989999999999
Q gi|254780711|r 1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD 80 (461)
Q Consensus 1 Mf~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~ 80 (461)
||++|+++|+++|++|+++++|||++++++|+||+.|||+|||+++||++|+++|++++++++++++++|+++++++||+
T Consensus 2 mf~~Ls~~l~~~~~~l~g~~~l~E~~i~~~l~eIr~ALLeADV~~~vvk~f~~~vk~k~~g~~v~~~~~p~q~iikiv~~ 81 (433)
T PRK00771 2 MLDKLGSSLKDALKKLAGATVIDKKTVKEVVKDIQRALLQADVNVKLVMNLSKEIERRALEEEPPKGMSKKEHIIKIVYE 81 (433)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 76889899999999861899889999999999999999965678799999999999997146245789989999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99987187742100025884189962344333468899999999861489507820542210047799998510347422
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL 160 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~ 160 (461)
||+++||++..+. .+|+||||||+|||||||||||||+||++ +|++|++||||||||||+|||++||++++||||
T Consensus 82 eL~~llg~~~~~~----~kP~Vim~vGlqGsGKTTT~aKLA~~~kk-~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~ 156 (433)
T PRK00771 82 ELVKLLGEEAEIL----LKPQTILLVGLQGSGKTTTAAKLARYFQK-KGLKVGVICADTWRPGAYEQLKQLCEKINVPFY 156 (433)
T ss_pred HHHHHHCCCCCCC----CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9999849676566----89858999737889789999999999997-799467850678836899999999986388731
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf 23321036899999999997415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r 161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240 (461)
Q Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~ 240 (461)
+...++||++|+++|+++++ +||+||||||||+|+|++||+||++|.++++|+|++||+||++||+|++||++|++++
T Consensus 157 ~~~~~~dp~~i~~~a~~~~k--~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~F~~~~ 234 (433)
T PRK00771 157 GDPKEKDAVKIVKEGLEKLK--KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKAFKEAV 234 (433)
T ss_pred CCCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 78899999999999999845--6988999776521040999999999987757976899865442267899999998753
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84407764115766330367778884787302615867232100136889987735862788999874211267899888
Q gi|254780711|r 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTA 320 (461)
Q Consensus 241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~ 320 (461)
++||+|+||+|||||||+|||++++||+||+|||+||++||||+|||+|||+|||||||+++|+|++++.+++++ ++..
T Consensus 235 ~i~gvIlTKlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~asRILGmGDi~sLvEk~~~~~~e~~-~~~~ 313 (433)
T PRK00771 235 GIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFISRLLGMGDLKSLLEKAEEVMDEEA-EEDV 313 (433)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHH
T ss_conf 887379972567887305421898878995688617872148866808899987089858999999998755999-9999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHH
Q ss_conf 65310463799999999998511488999998731344234323111678888899999745898786084113357899
Q gi|254780711|r 321 KKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKK 400 (461)
Q Consensus 321 ~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~ 400 (461)
+++++|+|||+||++|+++|+||||++++++||||++...+. .+.+.++++++||+|||+|||++||+||++||+||++
T Consensus 314 ~k~~~g~F~l~Df~~Q~~~i~kmG~~~~il~miPg~~~~~~~-~~~~~~e~~~k~~~aII~SMT~~Er~~p~ii~~SR~~ 392 (433)
T PRK00771 314 EAMMKGKFTLKDMYKQLEAMNKMGPLKQIMSMLPGGGGKLPD-EAIQVTEEKLKKYKVIMDSMTEEELENPEIINASRIK 392 (433)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHH
T ss_conf 987528856999999999998106899998638874210263-5553117888638479977999987394011658999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 97232667989999999999999999998606886201
Q gi|254780711|r 401 RIAAGSGTNAAKINKLLKLHRQVAEMMHSTQGLGGNAL 438 (461)
Q Consensus 401 RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~~~~~~~~~ 438 (461)
|||+|||++++|||+|||||++|++|||+|+++++.++
T Consensus 393 RIA~GSG~~v~eVn~Llkqf~~~~kmmk~~~k~~~~g~ 430 (433)
T PRK00771 393 RIARGSGVSPEEVRELLKYYKTMKNAMKGMKKGKMGGK 430 (433)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 97754998999999999999999999998568998888
No 5
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=100.00 E-value=0 Score=1006.63 Aligned_cols=425 Identities=30% Similarity=0.493 Sum_probs=400.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHCCCCCCCCCHHHHHHH
Q ss_conf 94037799999998742888789-8999999999999998524696999999999999---9830311126998999999
Q gi|254780711|r 1 MFDNLQERLGSIFQNITGKGSLS-ETDISNTLREIRRTFLEADVSLEVVQSFSKRVQE---KAKGEKILRSIQPGQMVIK 76 (461)
Q Consensus 1 Mf~~L~~~l~~~~~~l~~~~~l~-e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~---k~~~~~~~~~~~~~~~i~k 76 (461)
+|-.|+++|.+++.++.+.+++| |+.|+++|+||+.|||++|||+++|+++.++||. .+.-++.+.++|.+..|++
T Consensus 1 VLA~LG~~l~~AL~~~~saTv~dse~vl~~~Lkei~~ALL~~dvn~klv~~l~~Nik~kid~~n~e~~~~g~nKRk~iq~ 80 (453)
T TIGR01425 1 VLADLGSSLVSALRSMSSATVIDSEEVLNEMLKEICTALLESDVNVKLVRQLRENIKKKIDKINLEELASGLNKRKLIQK 80 (453)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 91010148999986012361104489999999999887511335267789888878874050351332103247899999
Q ss_pred HHHHHHHHHHCCCCCC-----------------CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9999999871877421-----------------00025884189962344333468899999999861489507820542
Q gi|254780711|r 77 IVHDELVEVLGKESIE-----------------LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 77 iv~~eL~~lLg~~~~~-----------------l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
+|++||++|++|...+ +.+.+++++||||||||||||||||.|||+||++ +|+||.||||||
T Consensus 81 ~vF~EL~~LvDp~~~APkPkklststktinGkk~~p~Kgk~~ViMfVGLQGaGKTTtctKLA~YYk~-rGfK~~lvCADT 159 (453)
T TIGR01425 81 AVFEELCNLVDPGVEAPKPKKLSTSTKTINGKKFTPKKGKSSVIMFVGLQGAGKTTTCTKLAYYYKR-RGFKPALVCADT 159 (453)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHC-CCCCEEEECCCC
T ss_conf 8999989760863234687533321101035034115688215888621488715668787777632-664325651775
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 21004779999851034742223321036899999999997415886998334422211246899999985138511000
Q gi|254780711|r 140 HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILL 219 (461)
Q Consensus 140 ~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~l 219 (461)
|||||+|||++.|.+.+||||+++.|.||+.||.+|++.|+++++|+|||||+|||..|+.|++|+..|.++++||.+++
T Consensus 160 FRAGAFdQLkqNA~kA~iPFYGsy~E~DPVkiA~EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iif 239 (453)
T TIGR01425 160 FRAGAFDQLKQNATKAKIPFYGSYLESDPVKIASEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIF 239 (453)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 42324899987476448971201048987078002011322127847998379873225888899876863349983699
Q ss_pred CCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 31011122568888988763584407764115766330367778884787302615867232100136889987735862
Q gi|254780711|r 220 VADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGD 299 (461)
Q Consensus 220 V~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD 299 (461)
|+|+.+||.|..||++|++++.+++||+|||||+|+||+|||++++|+.||.||||||||||||+|+|+.|+||||||||
T Consensus 240 VMDGsIGQAA~~QAkAFK~~~~vGSvIiTKLDGHAkGGGALSAVAATKsPiiFIGTGEhv~d~E~F~~~~FvskLLGmGD 319 (453)
T TIGR01425 240 VMDGSIGQAAFSQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDDFEIFDAEPFVSKLLGMGD 319 (453)
T ss_pred EECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 80661667889999986300350038875156776762378898753597798137750276057899714775402021
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 78899987421126789--9888653104637999999999985114889999987313442343231116788888999
Q gi|254780711|r 300 VVSLVEKAARNLNEKQA--ALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHI 377 (461)
Q Consensus 300 ~~~l~e~~~~~~d~~~~--~~l~~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~ 377 (461)
+.+|++++++....++. +.+-+||++|+|||+|||||+..+.||||+++|++||||++.-..+.....-...++|+|.
T Consensus 320 l~GL~~~v~~l~~~~~~~hk~li~~L~eG~fTlRd~~eQ~~NllKMGpl~~i~~MiPGl~~~~m~~g~~~e~~ak~K~~m 399 (453)
T TIGR01425 320 LKGLIDKVQDLKLDDEEKHKELIEKLKEGTFTLRDLYEQFQNLLKMGPLGNILSMIPGLSSELMSKGNEEESSAKIKKLM 399 (453)
T ss_pred HHHHHHHHHHHCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHE
T ss_conf 88999999751421031079999998359610688999998763115444686504778852146677125666741022
Q ss_pred HHHHCCCHHHHC--C-CCCC--CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 997458987860--8-4113--35789997232667989999999999999999
Q gi|254780711|r 378 AIIASMTKEERA--N-PSII--KHSRKKRIAAGSGTNAAKINKLLKLHRQVAEM 426 (461)
Q Consensus 378 aII~SMT~~Er~--~-P~ll--~~SR~~RIA~GSG~~v~eVn~Llk~f~~m~km 426 (461)
+|+||||.+|++ + |+++ ++||++|||||||+.+.||++||.||+.|++|
T Consensus 400 ~ImDSMt~~ELds~~G~k~~~~~pSRI~RvARGSG~~ireV~~lL~q~~~~~~m 453 (453)
T TIGR01425 400 TIMDSMTDKELDSTDGAKVFLKEPSRIVRVARGSGRDIREVEELLEQYKKFAQM 453 (453)
T ss_pred EEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 643465761236799852202188715987515887401287899999986049
No 6
>KOG0780 consensus
Probab=100.00 E-value=0 Score=944.18 Aligned_cols=431 Identities=35% Similarity=0.561 Sum_probs=414.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 94037799999998742888789899999999999999852469699999999999998303111269989999999999
Q gi|254780711|r 1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD 80 (461)
Q Consensus 1 Mf~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~ 80 (461)
++..|+.++.++|+.+.+.+.+++..++.+|+||++|||+|||++++|+++.++|++.+..+++..+.++++.|.++|++
T Consensus 2 vla~lGrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~ 81 (483)
T KOG0780 2 VLAELGRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFD 81 (483)
T ss_pred CHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHH
T ss_conf 65776506899999852688620778999999999999852588889999999999874624202445788999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99987187742100025884189962344333468899999999861489507820542210047799998510347422
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL 160 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~ 160 (461)
||+++++|+..++.+.+.+|+|||||||||+||||||+|||+||++ +|+||++||+|||||||+|||++||.+.+||||
T Consensus 82 eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780 82 ELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHH-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 9999718997646615689708999830578863008999999984-687245776022453068999987674077068
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf 23321036899999999997415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r 161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240 (461)
Q Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~ 240 (461)
+++.+.||+.|+.++++.|++++||+||+||+||||++.+||+||.++.++++|++++||+||+|||.|..||++|++.+
T Consensus 161 gsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780 161 GSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 40366555899999999888639728998278730124899999999985159873899985620076799999887761
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84407764115766330367778884787302615867232100136889987735862788999874211267899888
Q gi|254780711|r 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTA 320 (461)
Q Consensus 241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~ 320 (461)
+++++|+|||||+||||+|||++++|+.||+||||||++||||+|+|++|++|||||||+.+|+|++++.. .+.++++.
T Consensus 241 dvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~ 319 (483)
T KOG0780 241 DVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELV 319 (483)
T ss_pred CCCEEEEEECCCCCCCCCEEEEHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHH
T ss_conf 54037997225677777345303540798799816755111577780779998715652899999999985-52089999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCC--CHHH
Q ss_conf 65310463799999999998511488999998731344234323111678888899999745898786084113--3578
Q gi|254780711|r 321 KKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSII--KHSR 398 (461)
Q Consensus 321 ~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll--~~SR 398 (461)
+++++|+|||+|||+|++.+.||||++++++|||||+.++... ..-.+.++||+.++++|||++|+++|+++ ++||
T Consensus 320 ~kl~~gkFtlrd~y~Qfq~imkmGp~s~v~~MiPG~s~m~~~~--e~Es~~~~krm~~mmDsMt~~Elds~~~f~~~p~R 397 (483)
T KOG0780 320 EKLKQGKFTLRDFYDQFQNIMKMGPLSQVLGMIPGMSMMSKGN--EEESSAKLKRMMTMMDSMTDEELDSPELFVEEPSR 397 (483)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHH
T ss_conf 9988287019999999999985077989986387855588865--36799999999999972586433676323458357
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9997232667989999999999999999998606886
Q gi|254780711|r 399 KKRIAAGSGTNAAKINKLLKLHRQVAEMMHSTQGLGG 435 (461)
Q Consensus 399 ~~RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~~~~~~ 435 (461)
+.|||||||++++||.+||.||+++..|||++++.+|
T Consensus 398 ~~RvArgSG~~v~eV~ell~q~~~~~~~~kk~~~~~G 434 (483)
T KOG0780 398 IMRVARGSGTSVQEVMELLAQYKKFAAMMKKIGGIKG 434 (483)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 6334506885199999999999999999998068888
No 7
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=100.00 E-value=0 Score=659.84 Aligned_cols=268 Identities=37% Similarity=0.561 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC------CCCCCCCCCC
Q ss_conf 9999999999998524696999999999999983031112699899999999999998718774------2100025884
Q gi|254780711|r 27 ISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKES------IELDLNAPSP 100 (461)
Q Consensus 27 i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~------~~l~~~~~~p 100 (461)
.+++++|++..||+|||++++|.++++.+++++.+.++.......+.+.+.+.+.+.+.+.+.. .+..++.++|
T Consensus 3 de~~~EELE~~Ll~~Dv~~~~v~~i~~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~kp 82 (284)
T TIGR00064 3 DEDFFEELEEILLESDVGLEVVEKIIEELKKELVGKKVKDEEKLKEILKEALKEILKEILDKDTLLDLEQIEELPEEKKP 82 (284)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 03689989999998505189999999998875403557707899999999999987411232113344334430147897
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223321-03689999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIAIRATQSA 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~~~a~~~a 179 (461)
+||||||+||+|||||+||||++|++ +|++|+|+|+|||||||+|||+.||+++||+++....+ +||++|+|+|+++|
T Consensus 83 ~Vil~VGVNG~GKTTTIaKLA~~l~~-~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPAaV~fDAi~~A 161 (284)
T TIGR00064 83 NVILFVGVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNADPAAVIFDAIQAA 161 (284)
T ss_pred EEEEEEEEECCCHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 79999844088601028899999987-49908998275247999999999898838755407889887178999989999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 7415886998334422211246899999985138-------511000310111225688889887635844077641157
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN-------PHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDG 252 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~-------p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~ 252 (461)
+.++||+||||||||+|++.|||+||++|.++++ |||++||+||++||+|++||+.|++++++||+|||||||
T Consensus 162 k~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~Gqna~~QA~~F~eav~ltGiiLTKLDg 241 (284)
T TIGR00064 162 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDG 241 (284)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 87499789973475454662039999999998732102578755754220222030899999986540688589963468
Q ss_pred CCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6633036777888478730261586723210013688998773
Q gi|254780711|r 253 DGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL 295 (461)
Q Consensus 253 ~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL 295 (461)
|||||++||+++..++||+|||+||++|||.||+|++|+.+|+
T Consensus 242 ~AKGG~~l~i~~~l~~Pv~~~G~GE~~dDL~~Fd~~~fv~~L~ 284 (284)
T TIGR00064 242 TAKGGIILAIAYELKLPVKFIGVGEKIDDLAPFDADWFVEALF 284 (284)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHCC
T ss_conf 8037899988998579769985488733201479789987509
No 8
>PRK10416 cell division protein FtsY; Provisional
Probab=100.00 E-value=0 Score=616.58 Aligned_cols=284 Identities=33% Similarity=0.535 Sum_probs=263.3
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998742888789899999999999999852469699999999999998303111269989999999999999871
Q gi|254780711|r 7 ERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVL 86 (461)
Q Consensus 7 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lL 86 (461)
++|.+.|..|...++||++. ++|++..||.|||++.++.++++++++++...++ ...+.+..++.++|.++|
T Consensus 210 ~~l~~~~~~lf~~kkiD~~~----~eeLEe~Li~aDvGv~tt~~ii~~l~~~~~~~~~----~~~~~l~~~l~~~~~~il 281 (499)
T PRK10416 210 ENLGSGFISLFRGKKIDDDL----FEELEEQLLIADVGVETTRKIITNLTEGASRKQL----RDAEALYGLLKEEMGEIL 281 (499)
T ss_pred HHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHH
T ss_conf 99999999986689888899----9999999997205999999999999999986479----999999999999999987
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 87742100025884189962344333468899999999861489507820542210047799998510347422233210
Q gi|254780711|r 87 GKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ 166 (461)
Q Consensus 87 g~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~ 166 (461)
.+...++.+..++|+||||||+|||||||||||||+||++ +|++|+|+|||||||||+|||++||++++||+|....++
T Consensus 282 ~~~~~~l~~~~~~P~VIl~vGvNG~GKTTTigKLA~~~~~-~gkkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~~~g~ 360 (499)
T PRK10416 282 AKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGA 360 (499)
T ss_pred HCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 3104466568999879999747878789899999999997-799537884066756899999998424573698368999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC------CCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf 36899999999997415886998334422211246899999985138------511000310111225688889887635
Q gi|254780711|r 167 SPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN------PHEILLVADALTGQDAVHLARNFDKIV 240 (461)
Q Consensus 167 dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~------p~e~~lV~da~~Gq~a~~~a~~F~~~~ 240 (461)
||++|+++|+++|+.++||+||||||||+|++.+||+||++|.++++ |||++||+||++||+|++||+.|++++
T Consensus 361 Dpa~V~~dai~~a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tGQna~~qak~F~e~~ 440 (499)
T PRK10416 361 DSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV 440 (499)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 97999999999999729998998577643260999999999999997237899974899977876778999999984427
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 84407764115766330367778884787302615867232100136889987735862
Q gi|254780711|r 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGD 299 (461)
Q Consensus 241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD 299 (461)
++||+|+||||||||||++||+++.+++||+|||+||++|||++|+|+.|+.+|++-.|
T Consensus 441 ~ltGiIlTKlDGtAKGG~~lsi~~~~~~PI~fiG~GE~idDL~~F~~~~Fv~aLf~~e~ 499 (499)
T PRK10416 441 GLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED 499 (499)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHCCCC
T ss_conf 99759996567788525999999998839599867988220667798999999844799
No 9
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=591.90 Aligned_cols=290 Identities=37% Similarity=0.555 Sum_probs=255.8
Q ss_pred CCHHHHHHHHHHHHHCC------CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHH
Q ss_conf 40377999999987428------8878989999999999999985246969999999999999-8303111269989999
Q gi|254780711|r 2 FDNLQERLGSIFQNITG------KGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEK-AKGEKILRSIQPGQMV 74 (461)
Q Consensus 2 f~~L~~~l~~~~~~l~~------~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k-~~~~~~~~~~~~~~~i 74 (461)
|+.|.+.|....+.+.+ ...+.+++.+++++|++..||+|||+++++..++++++++ ....+ +...+.+
T Consensus 34 ~~~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~----~~~~~~v 109 (340)
T COG0552 34 FERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKK----IKDEETV 109 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC----CCCHHHH
T ss_conf 999988999999999998766301234430048899999999997024699999999999987510236----8988999
Q ss_pred HHHHHHHHHHHHCCCCC----CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 99999999987187742----10002588418996234433346889999999986148950782054221004779999
Q gi|254780711|r 75 IKIVHDELVEVLGKESI----ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRY 150 (461)
Q Consensus 75 ~kiv~~eL~~lLg~~~~----~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~ 150 (461)
..++.+.|..+|.+... ......++|+||||||+||+|||||+||||+||+. +|++|+++||||||+||+|||++
T Consensus 110 ~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFRAaAiEQL~~ 188 (340)
T COG0552 110 KEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFRAAAIEQLEV 188 (340)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHH
T ss_conf 99999999998465544443655235898679999934888637179999999997-89869998233478999999999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC------CCCCCCCCCHH
Q ss_conf 851034742223321036899999999997415886998334422211246899999985138------51100031011
Q gi|254780711|r 151 LGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN------PHEILLVADAL 224 (461)
Q Consensus 151 ~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~------p~e~~lV~da~ 224 (461)
|++++||+++....|+||++|+|+|+++|+.++||+||||||||+|++.+||+||++|.++++ |||++||+||+
T Consensus 189 w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 189 WGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred HHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 99995992782599998089999999999976999999967554457366899999999984645689984289997756
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 122568888988763584407764115766330367778884787302615867232100136889987735
Q gi|254780711|r 225 TGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILG 296 (461)
Q Consensus 225 ~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLG 296 (461)
+||+|++||+.|++++++||+|+||||||||||++||+++++++||+|||+||+++||.+|+|++|++.||+
T Consensus 269 tGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 269 TGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHC
T ss_conf 475689999999875288669997024677762435088886999799857888443200699999998609
No 10
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=0 Score=547.54 Aligned_cols=264 Identities=21% Similarity=0.373 Sum_probs=238.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 87898999999999999998524696999999999999983031112699899999999999998718774210002588
Q gi|254780711|r 20 GSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPS 99 (461)
Q Consensus 20 ~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~ 99 (461)
.+++|++|++.++||+++||+|||++++|++|+++|++++.+.++. .++++++++++|..+++.+. ....+
T Consensus 4 ~~~~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~ik~k~~~~~~~-----~~~vi~~l~~~l~~~~~~~~----~~~~~ 74 (270)
T PRK06731 4 KKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMI-----TEEVIEYILEDMSSHFNTEN----VFEKE 74 (270)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHHHHHCCCC----CCCCC
T ss_conf 2012650999999999999976998899999999999885045532-----99999999999987507665----46799
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
|++||||||||||||||+||||+||++ ++++|++||||||||||+|||++||+++|+|+|.. .||.++......+.
T Consensus 75 ~~vI~lvG~~G~GKTTT~AKLA~~~~~-~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~---~~~~~~~~~~~~~~ 150 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAMTRALTYFK 150 (270)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECC---CCHHHHHHHHHHHH
T ss_conf 818999888989889999999999986-79908999838888889999999999819953545---88789999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf 7415886998334422211246899999985138511000310111-225688889887635844077641157663303
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-GQDAVHLARNFDKIVDLTGIILTRMDGDGRGGA 258 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~ 258 (461)
....+|+||||||||+|+|+++|+||.++.+.++|++++||+||++ ||++.++++.|+. ++++|+|+||+|||+|||+
T Consensus 151 ~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~~~~~f~~-~~i~gvIlTKlD~ta~gG~ 229 (270)
T PRK06731 151 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGE 229 (270)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCH
T ss_conf 976999999979998714699999999986063898799998687776999999998077-9998899965358997729
Q ss_pred HHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCC
Q ss_conf 677788847873026158672-321001368899877358
Q gi|254780711|r 259 ALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGM 297 (461)
Q Consensus 259 als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGm 297 (461)
|||+++.+++||+|+|+||++ +|||+|+|+++|+|||+-
T Consensus 230 als~~~~~~~PI~fig~Ge~VpeDi~~~~~~~la~riL~~ 269 (270)
T PRK06731 230 LLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHC
T ss_conf 9999999885979994599970214137999999998304
No 11
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=0 Score=452.23 Aligned_cols=215 Identities=23% Similarity=0.329 Sum_probs=188.7
Q ss_pred HHHHHHHHCCC---CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999871877---421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r 79 HDELVEVLGKE---SIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI 155 (461)
Q Consensus 79 ~~eL~~lLg~~---~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~ 155 (461)
.++|..+++.. ..++.+..++ ||||||+||||||||+||||++|++ +|++|++||||||||||+|||++||+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~l~~g~--VIaLVGvnGvGKTTTiAKLA~~l~~-~gkkV~LVAaDTFRaAAiEQLk~~g~rl 260 (407)
T PRK12726 184 TDWFVPYLSGKLAVEDSFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYADKL 260 (407)
T ss_pred HHHHHHHHCCCCCCCCEEEECCCC--EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 689999753897703202303690--8999899989789999999999997-7991799970667788999999999997
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHH
Q ss_conf 47422233210368999999999974158869983344222112468999999851385110003101112256888898
Q gi|254780711|r 156 QVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARN 235 (461)
Q Consensus 156 ~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~ 235 (461)
+||||. +.||.++.......+..+.+|+||||||||+|++.++|+||.++.++++|++++||+||+++++++.++..
T Consensus 261 gVpV~~---~~dpa~l~~av~~~a~~~~~DvVIIDTAGRl~~d~~Lm~EL~ki~~vi~P~~~lLV~dag~~~~~v~qa~~ 337 (407)
T PRK12726 261 DVELIV---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP 337 (407)
T ss_pred CCEEEE---ECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 964998---18889999999999862899989996999881349999999998733289669999367566999999998
Q ss_pred HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCC
Q ss_conf 87635844077641157663303677788847873026158672-32100136889987735862
Q gi|254780711|r 236 FDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGD 299 (461)
Q Consensus 236 F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD 299 (461)
|...++++|+|+||||||||||++||++..+++||+|||+||+| |||.+|++++++.|+||-..
T Consensus 338 ~~~~v~ItGiILTKLDgtAKGG~aLSi~~~~~lPI~fIG~GEkIPEDi~~~~~~~l~~R~l~~~~ 402 (407)
T PRK12726 338 KLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGTDR 402 (407)
T ss_pred HHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCHH
T ss_conf 70479998799970147898539999999988897999479999701202898999999846316
No 12
>KOG0781 consensus
Probab=100.00 E-value=0 Score=441.26 Aligned_cols=288 Identities=33% Similarity=0.524 Sum_probs=268.5
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998742888789899999999999999852469699999999999998303111269989999999999999871
Q gi|254780711|r 7 ERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVL 86 (461)
Q Consensus 7 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lL 86 (461)
....+.|++|.|.+.|.|+|++..|+.++..|+.-+|+.+++..+|++|...+.|.++..-.+...-+...+.+.|++||
T Consensus 278 g~aFg~fkglvG~K~L~eeDL~pvL~km~ehLitKNVA~eiA~~LcesV~a~Legkkv~sfs~V~~Tvk~Al~daLvQIL 357 (587)
T KOG0781 278 GGAFGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQIL 357 (587)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 45899888631556444756699999999998762012899999999999985102104502778999999999999873
Q ss_pred CCCCC-CC------CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC----
Q ss_conf 87742-10------00258841899623443334688999999998614895078205422100477999985103----
Q gi|254780711|r 87 GKESI-EL------DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI---- 155 (461)
Q Consensus 87 g~~~~-~l------~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~---- 155 (461)
.|..+ ++ ....++|+||.|||+||+||.|+.||+|+||.. ++.+|+++||||||+||+|||+++.+++
T Consensus 358 TP~~sVDlLrdI~~ar~~krPYvi~fvGVNGVGKSTNLAKIayWLlq-NkfrVlIAACDTFRsGAvEQLrtHv~rl~~l~ 436 (587)
T KOG0781 358 TPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQ-NKFRVLIAACDTFRSGAVEQLRTHVERLSALH 436 (587)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 88730669999999874689759999821476651329999999985-78369998624312447899999999998745
Q ss_pred --CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH
Q ss_conf --474222332103689999999999741588699833442221124689999998513851100031011122568888
Q gi|254780711|r 156 --QVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA 233 (461)
Q Consensus 156 --~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a 233 (461)
-|++|...+|+||+.||+.|+++|+.++|||||||||||.|+|..||.-|.++.++.+||.+++|-.|..|.|+++|+
T Consensus 437 ~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDvvLiDTAGRmhn~~~LM~~L~kl~~~n~pD~i~~VgEALVG~dsvdq~ 516 (587)
T KOG0781 437 GTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQL 516 (587)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCHHHHHH
T ss_conf 52048886104778289999999999866987899835443347806789999997447986599850555275589999
Q ss_pred HHHHHHCC-------CCCEEEEECCC-CCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98876358-------44077641157-6633036777888478730261586723210013688998773
Q gi|254780711|r 234 RNFDKIVD-------LTGIILTRMDG-DGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL 295 (461)
Q Consensus 234 ~~F~~~~~-------i~giIlTKlD~-~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL 295 (461)
+.|+.++. |+|+|+||+|. +-+.|+++|+++.|++||.|+|+||.+.||.-.+.+.+++.|+
T Consensus 517 ~~Fn~al~d~~~~r~iDgilltK~DTvdd~vG~~v~Mvy~t~~PIlFvG~GQtysDLr~l~vk~vV~tLm 586 (587)
T KOG0781 517 KKFNRALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATLM 586 (587)
T ss_pred HHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHEECCCCEEEEECCCCCHHHHHCCHHHHHHHHH
T ss_conf 9999987448974423437887125065688878764200389769984586610376525899999863
No 13
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=0 Score=432.49 Aligned_cols=267 Identities=18% Similarity=0.247 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 99999999985246969999999999999830311126998999999999999987187742100025884189962344
Q gi|254780711|r 30 TLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQ 109 (461)
Q Consensus 30 ~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~ 109 (461)
.+..+...|.+.|++..+.+++.+.++++....+ ++.-+.+.+.+.+.+.+.+..... + ....++.||+||||+
T Consensus 110 ~~~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~v~~~l~~~i~~~i~~~~~-~-~~~~k~~vi~lVGPT 183 (388)
T PRK12723 110 TILKIEDILRSNDFSESYIKDINEFIKREFSLSD----LDDYDKVRDSVIIYIAKTIKCSGS-I-IDNLKKRIFILVGPT 183 (388)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHCCCCC-C-CCCCCCEEEEEECCC
T ss_conf 5899999998675579999999999998722122----440879999999999976223666-5-335576289998998
Q ss_pred CCCHHHHHHHHHHHHHHHCCC---CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 333468899999999861489---50782054221004779999851034742223321036899999999997415886
Q gi|254780711|r 110 GSGKTTTTAKIAYHLKTLKKK---KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDA 186 (461)
Q Consensus 110 GsGKTTT~aKLA~~~~~~~~~---kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~ 186 (461)
|||||||+||||++|..++++ +|++|++||||+||+|||++||+.+|||++......|.. .++.. .++||+
T Consensus 184 GvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~----~~l~~--~~~~D~ 257 (388)
T PRK12723 184 GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLK----EEITQ--SKDFDL 257 (388)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHH----HHHHH--HCCCCE
T ss_conf 875787999999999986267677379998078758899999999999788069857889999----99997--249999
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHCCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 99833442221124689999998513851-10003101112256-88889887635844077641157663303677788
Q gi|254780711|r 187 VILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADALTGQDA-VHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRT 264 (461)
Q Consensus 187 iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da~~Gq~a-~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~ 264 (461)
||||||||+|.|..+++||+++.+.++|+ +++||++|++++.. .++++.|. .++++++|+||||+++++|++||+..
T Consensus 258 IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f~-~~~~~~~I~TKlDEt~~~G~~l~~~~ 336 (388)
T PRK12723 258 VLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQFS-PFSYKTVIFTKLDETTCVGNLISLIH 336 (388)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 99958998856899999999999741898459999879899999999999842-79998499983227898669999999
Q ss_pred HHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHC--CCCHHHHHHHHHH
Q ss_conf 847873026158672-32100136889987735--8627889998742
Q gi|254780711|r 265 VTGKPIKAIGTGEKI-NDLENFFPDRIANRILG--MGDVVSLVEKAAR 309 (461)
Q Consensus 265 ~~~~PI~fig~GE~~-~dle~F~p~~~~~riLG--mgD~~~l~e~~~~ 309 (461)
.+++||.|+|+||++ ||||+|+|++|+++||| .||..+.+++...
T Consensus 337 ~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~ilG~~~~~~~~~~~~~~~ 384 (388)
T PRK12723 337 EMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDDAEFIRKLKS 384 (388)
T ss_pred HHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 988886999389968302033899999999848714546999999850
No 14
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=100.00 E-value=0 Score=445.60 Aligned_cols=196 Identities=51% Similarity=0.778 Sum_probs=192.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
|+||+||||+|+|||||+||||+++++ +|++|++|++||||+||+|||++||+.+++|+|....++||+++++++++.+
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~-~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~ 79 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKK-QGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKA 79 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 969999899999889999999999997-7992899975877688999999999863981781487778789999999998
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf 74158869983344222112468999999851385110003101112256888898876358440776411576633036
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAA 259 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~a 259 (461)
+.+++|+||||||||+|.|.++|+||+++...++|++++||+||++||++.+++..|++.++++|+|+||||+++++|++
T Consensus 80 ~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~~~G~~ 159 (196)
T pfam00448 80 KAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNALNQAKAFNEAVGITGVILTKLDGDAKGGAA 159 (196)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
T ss_conf 84689999998999874767789999999852287302899856778213789998760047762688840578875299
Q ss_pred HHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 7778884787302615867232100136889987735
Q gi|254780711|r 260 LSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILG 296 (461)
Q Consensus 260 ls~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLG 296 (461)
||+...+++||.|+|+||++||||+|+|++|++||||
T Consensus 160 l~~~~~~~~Pi~~~t~Gq~v~Dl~~~~~~~~~~~lLG 196 (196)
T pfam00448 160 LSIAAETGKPIKFIGVGEKIDDLEPFDPERFVSRLLG 196 (196)
T ss_pred HHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCC
T ss_conf 9899998969799967998120634799999998559
No 15
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=0 Score=405.38 Aligned_cols=263 Identities=21% Similarity=0.266 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEEEEC
Q ss_conf 9999999999852469699999999999998303111269989999999999999871877421000-258841899623
Q gi|254780711|r 29 NTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDL-NAPSPLVIMLVG 107 (461)
Q Consensus 29 ~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~-~~~~p~vIllvG 107 (461)
..+..+...|++.+|+..+++++.+.+.++....+... ...+.+-+.+.|.+.+......+.. ....+.||+|||
T Consensus 155 ~~~~~l~~~L~~~~~~~~~~~~i~~~l~~~~~~~d~~~----~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~kvi~lVG 230 (432)
T PRK12724 155 SPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGR----NHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVG 230 (432)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC----HHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEEC
T ss_conf 68999999998756688999999999987538100110----67899999999998714774011035777762999989
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 44333468899999999861489507820542210047799998510347422233210368999999999974158869
Q gi|254780711|r 108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAV 187 (461)
Q Consensus 108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~i 187 (461)
|+|||||||+||||++|...+++||+||++||||+||+|||++||+++|||++... ||.+. .+++.. .++|+|
T Consensus 231 PTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~---~~~el-~~al~~---~~~DlI 303 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK---DIKKF-KETLAR---DGSELI 303 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE---CHHHH-HHHHHH---CCCCEE
T ss_conf 99988899999999999997499279995266537799999999998599459951---89999-999985---699999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCC---CCCCCCCCCHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 98334422211246899999985138---5110003101112-2568888988763584407764115766330367778
Q gi|254780711|r 188 ILDTAGRNHINDSLMQEISEIKSLTN---PHEILLVADALTG-QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMR 263 (461)
Q Consensus 188 iiDTaGR~~~d~~lm~El~~i~~~~~---p~e~~lV~da~~G-q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~ 263 (461)
|||||||+|.|...++||+.+.+++. +.|++||++|++. ++..++++.|. .++++++|+||||+++..|++|++.
T Consensus 304 LIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~-~l~~~~lIfTKLDET~s~G~ilni~ 382 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE-SLNYRRILLTKLDEADFLGSFLELA 382 (432)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 992999897899999999999986366788517999978899899999999842-6999849997122779866999999
Q ss_pred HHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf 8847873026158672-321001368899877358627889
Q gi|254780711|r 264 TVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 264 ~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD~~~l 303 (461)
..+++||.|+++||+| |||++.+|++++.-|||-.-+..|
T Consensus 383 ~~~~~PisYiT~GQ~VPdDI~~A~~~~la~lilg~~~~~~~ 423 (432)
T PRK12724 383 DTYSKSFTYLSVGQEVPFDILNATKNLMAECVVFPEKIAEL 423 (432)
T ss_pred HHHCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99889869980899797173335999999997667989987
No 16
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=0 Score=391.74 Aligned_cols=253 Identities=25% Similarity=0.375 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 99999999999852469699999999999998303111269989999999999999871877421000258841899623
Q gi|254780711|r 28 SNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVG 107 (461)
Q Consensus 28 ~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvG 107 (461)
......+...|++.+|+..++.++++.+.+.. ++.+ ....+.+.|.+.|..... .......||+|||
T Consensus 151 ~p~~~~l~~~L~~~Gvs~~la~~l~~~~~~~~---------~~~~-~~~~l~~~L~~~l~~~~~---~~~~~~~vvalVG 217 (412)
T PRK05703 151 PPEFAKLYKRLKESGLSPEIADKLLKLLLEDM---------NPRE-AWRYLLELLANMLPTRVE---DILEQGGVVALVG 217 (412)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---------CHHH-HHHHHHHHHHHHCCCCCC---CCCCCCCEEEEEC
T ss_conf 87899999999986999999999999866428---------9799-999999999975788876---6545673699988
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 44333468899999999861489-50782054221004779999851034742223321036899999999997415886
Q gi|254780711|r 108 LQGSGKTTTTAKIAYHLKTLKKK-KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDA 186 (461)
Q Consensus 108 l~GsGKTTT~aKLA~~~~~~~~~-kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~ 186 (461)
|+|||||||+||||+++..++++ +|+||++||||+||+|||++||+++|||++.... |.++ ..+++. ..++|+
T Consensus 218 PTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~---~~~l-~~al~~--~~~~dl 291 (412)
T PRK05703 218 PTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYD---PKEL-AKALEQ--LANCDL 291 (412)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECC---HHHH-HHHHHH--HCCCCE
T ss_conf 8887567699999999999729981799983767777999999999971973798479---9999-999987--158997
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf 998334422211246899999985138511000310111-2256888898876358440776411576633036777888
Q gi|254780711|r 187 VILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-GQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTV 265 (461)
Q Consensus 187 iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~ 265 (461)
||||||||+|.|..+++||+.+.+...|.+++||++|++ .++..++++.|.. ++++++|+||||++++.|.+|++...
T Consensus 292 ILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~~-~~~~~lI~TKlDEt~~~G~il~~~~~ 370 (412)
T PRK05703 292 ILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFSR-LPLDGLILTKLDETSSLGSILSLLIE 370 (412)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf 99968988978999999999998624887189997598998999999998467-99987999711289986299999999
Q ss_pred HCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCCH
Q ss_conf 47873026158672-321001368899877358627
Q gi|254780711|r 266 TGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGDV 300 (461)
Q Consensus 266 ~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD~ 300 (461)
+++||.|+++||+| |||++++|+++++++||-.|.
T Consensus 371 ~~lplsy~t~GQ~VPeDi~~a~~~~l~~~~l~g~~~ 406 (412)
T PRK05703 371 SGLPISYLTDGQRVPDDIKVATPEELVRLALGGFLK 406 (412)
T ss_pred HCCCEEEEECCCCCHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 887969994699972434228999999998587555
No 17
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=100.00 E-value=0 Score=390.07 Aligned_cols=173 Identities=57% Similarity=0.849 Sum_probs=169.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
+||+||||+|||||||+||||++++. +|++|++|++||||+||+|||++||+++++|++....+.||.++++++++.++
T Consensus 1 ~Vi~lvGptGvGKTTTiaKLA~~~~~-~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999899999889999999999997-69928999748875779999999999749859922775587999999999987
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
Q ss_conf 41588699833442221124689999998513851100031011122568888988763584407764115766330367
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAAL 260 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~al 260 (461)
.+++|+||||||||+|+|.++|+||+++.+.++|++++||+||++||++.++++.|++.++++++|+||+|+++++|++|
T Consensus 80 ~~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~~~G~~l 159 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAAL 159 (173)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHH
T ss_conf 56899899978887879999999999998644897215742465506589999998742799789997143899757999
Q ss_pred HHHHHHCCCHHHEE
Q ss_conf 77888478730261
Q gi|254780711|r 261 SMRTVTGKPIKAIG 274 (461)
Q Consensus 261 s~~~~~~~PI~fig 274 (461)
|+.+.+++||.|||
T Consensus 160 s~~~~~~~Pi~fig 173 (173)
T cd03115 160 SIRAVTGKPIKFIG 173 (173)
T ss_pred HHHHHHCCCEEEEC
T ss_conf 99999890908509
No 18
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=1.4e-45 Score=368.21 Aligned_cols=250 Identities=23% Similarity=0.260 Sum_probs=203.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 99999998524696999999999999983031112699899999999999998718774210002588418996234433
Q gi|254780711|r 32 REIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGS 111 (461)
Q Consensus 32 ~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~Gs 111 (461)
.++.+.|++++|+..+++++++++... .++.+ ....+...|.+.|...... .....+..|++||||+||
T Consensus 119 ~~l~~~L~~~g~~~~la~~l~~~l~~~---------~~~~~-~~~~~~~~l~~~l~~~~~~-~~~~~~ggV~alVGPTGV 187 (404)
T PRK06995 119 GALFRHLLAAGFSAQLVRMLLENLPAG---------DDAQA-AMDWARSVLASNLPVLGSE-DALMERGGVFALVGPTGV 187 (404)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCC---------CCHHH-HHHHHHHHHHHHCCCCCCC-CCHHCCCCEEEEECCCCC
T ss_conf 999999998799999999999847033---------89789-9999999999746666665-310114755898668887
Q ss_pred CHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 346889999999986148-9507820542210047799998510347422233210368999999999974158869983
Q gi|254780711|r 112 GKTTTTAKIAYHLKTLKK-KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILD 190 (461)
Q Consensus 112 GKTTT~aKLA~~~~~~~~-~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiD 190 (461)
|||||+||||++|..++| +||++|++||||+||+|||++||+++|||++......| . ..+++. .+++|+||||
T Consensus 188 GKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~e---L-~~aL~~--l~~~dlILID 261 (404)
T PRK06995 188 GKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAAD---L-RLALAE--LRNKHIVLID 261 (404)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHH---H-HHHHHH--HCCCCEEEEE
T ss_conf 637589999999999838983799976875478999999999875955999599999---9-999997--0899999980
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCC
Q ss_conf 344222112468999999851385110003101112-2568888988763584407764115766330367778884787
Q gi|254780711|r 191 TAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKP 269 (461)
Q Consensus 191 TaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~P 269 (461)
||||+|.|..+.+|+..+.....|.+++||++|++. ++..++++.|. .++++++|+||+|++...|.+|++...+++|
T Consensus 262 TaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~-~~~~~~~I~TKLDEt~~~G~iln~~~~~~lP 340 (404)
T PRK06995 262 TVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYR-GPGLAGCILTKLDEAASLGGALDTVIRHKLP 340 (404)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 999897688899999999735788528999779899999999999844-6999839983040679723999999997898
Q ss_pred HHHEECCCCC-CCCCCCCHHHHHHHHHCCCC
Q ss_conf 3026158672-32100136889987735862
Q gi|254780711|r 270 IKAIGTGEKI-NDLENFFPDRIANRILGMGD 299 (461)
Q Consensus 270 I~fig~GE~~-~dle~F~p~~~~~riLGmgD 299 (461)
|.|+++||+| |||++-+++..++|-+...-
T Consensus 341 lsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~~ 371 (404)
T PRK06995 341 LHYVSNGQRVPEDLHVANAKFLLHRAFCAPR 371 (404)
T ss_pred EEEECCCCCCCCCHHCCCHHHHHHHHHHCCC
T ss_conf 5998189958421210898999999862645
No 19
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.4e-45 Score=367.26 Aligned_cols=253 Identities=23% Similarity=0.391 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 99999999985246969999999999999830311126998999999999999987187742100025884189962344
Q gi|254780711|r 30 TLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQ 109 (461)
Q Consensus 30 ~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~ 109 (461)
.+..+-+.|-..||..-....+.+.++-+..... -++..+ +++.+.+.+-.-+. .+..+.+ .-.+|.||||+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~---~~~~~~~-~~q~IALVGPT 250 (436)
T PRK11889 179 IIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT---MITEEE-VIKYILEDMRSHFN---TENVFEK-EVQTIALIGPT 250 (436)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC---CCCHHH-HHHHHHHHHHHHCC---HHHHHHH-HCEEEEEECCC
T ss_conf 9999999988555258999999998631121341---102999-99999999887403---1013364-17179998999
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf 333468899999999861489507820542210047799998510347422233210368999999999974-1588699
Q gi|254780711|r 110 GSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD-GGYDAVI 188 (461)
Q Consensus 110 GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~-~~~D~ii 188 (461)
|+|||||+||||++|.. ++++|++|++||||+||+|||++||+++++|+..... |.+. ..++..+++ .+||+||
T Consensus 251 GVGKTTTIAKLAArf~~-~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~d---p~eL-~~AL~~lkdka~~DLIL 325 (436)
T PRK11889 251 GVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD---EAAM-TRALTYFKEEARVDYIL 325 (436)
T ss_pred CCCHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECC---HHHH-HHHHHHHHHCCCCCEEE
T ss_conf 98889999999999861-6980899980663476999999999984994399688---8999-99999876336888899
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHC
Q ss_conf 83344222112468999999851385110003101112-25688889887635844077641157663303677788847
Q gi|254780711|r 189 LDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTG 267 (461)
Q Consensus 189 iDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~ 267 (461)
||||||++.|...++||..+.+...|++++||++|++. ++..++++.|.. ++++|+|+||||+++..|.+||+...++
T Consensus 326 IDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~-l~idglIfTKLDET~SlG~ILNv~~~s~ 404 (436)
T PRK11889 326 IDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSS 404 (436)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCHHHHHHHHHHC
T ss_conf 929898846899999999998512777169999788998999999997257-9988289971325687037888998839
Q ss_pred CCHHHEECCCCC-CCCCCCCHHHHHHHHHC
Q ss_conf 873026158672-32100136889987735
Q gi|254780711|r 268 KPIKAIGTGEKI-NDLENFFPDRIANRILG 296 (461)
Q Consensus 268 ~PI~fig~GE~~-~dle~F~p~~~~~riLG 296 (461)
+||.|+++||++ +||++++++++|..||-
T Consensus 405 LPIsYvTdGQ~VPEDIevA~ae~LAk~mLe 434 (436)
T PRK11889 405 APIVLMTDGQDVKKNIHIATAEHLAKQMLQ 434 (436)
T ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHH
T ss_conf 987997899858753000699999999843
No 20
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=100.00 E-value=3.5e-44 Score=357.27 Aligned_cols=219 Identities=28% Similarity=0.393 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 99999999999871877421000258841899623443334688999999998-61489507820542210047799998
Q gi|254780711|r 73 MVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLK-TLKKKKILMASLDVHRPAAQEQLRYL 151 (461)
Q Consensus 73 ~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~-~~~~~kV~lv~~Dt~R~aA~eQL~~~ 151 (461)
.......+-|..++..-...+ ...++.||+||||+|+|||||+||||++|. ..+.++|++|++||||+||+|||++|
T Consensus 178 ~~~~~~~~~l~~~~~~~~~~~--~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Y 255 (407)
T COG1419 178 EDLRYFSEKLRKLLLSLIENL--IVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTY 255 (407)
T ss_pred CHHHHHHHHHHHHHHHHCCCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 123217999999887644111--124685799989988758879999999997532576068997144115289999999
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHH
Q ss_conf 51034742223321036899999999997415886998334422211246899999985138511000310111-22568
Q gi|254780711|r 152 GEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-GQDAV 230 (461)
Q Consensus 152 a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~ 230 (461)
|+.+|+|+....+. .+. .+++..+. +||+||||||||+|.|...++||+.+..+..+.+++||++|++ .+|.-
T Consensus 256 a~im~vp~~vv~~~---~el-~~ai~~l~--~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlk 329 (407)
T COG1419 256 ADIMGVPLEVVYSP---KEL-AEAIEALR--DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLK 329 (407)
T ss_pred HHHHCCCEEEECCH---HHH-HHHHHHHH--CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHH
T ss_conf 99869955996399---999-99999853--1888999689988337899999999970356621799984576468899
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCCH
Q ss_conf 8889887635844077641157663303677788847873026158672-321001368899877358627
Q gi|254780711|r 231 HLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGDV 300 (461)
Q Consensus 231 ~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD~ 300 (461)
++.+.|. .++++|+|+||+|+++..|.++|+.+++++||.|+++||+| |||++-+|+.+++|++|.-..
T Consensus 330 ei~~~f~-~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~ 399 (407)
T COG1419 330 EIIKQFS-LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFAN 399 (407)
T ss_pred HHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCHHHHHHHHHCCCCC
T ss_conf 9999724-588661689713356763389999999689749971798787035535868899998612144
No 21
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=6.1e-41 Score=332.60 Aligned_cols=237 Identities=24% Similarity=0.330 Sum_probs=187.9
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHH
Q ss_conf 99852469699999999999998303111269989999999999999871877421000258841899623443334688
Q gi|254780711|r 37 TFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTT 116 (461)
Q Consensus 37 aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT 116 (461)
-|+++.++..+++.+...+- ...++.+ -...+...|.+-|--...+. +..++ |+.|||++|+|||||
T Consensus 298 rL~~~GfS~~Lar~L~~~lP---------~~~~~~~-a~~~ll~~La~~Lpv~~~d~-~~~gG--v~AlvGpTGvGKTTT 364 (557)
T PRK12727 298 LMDDYGFDAGLTRDVAMQIP---------ADTELHR-GRGLMLGLLSKRLPVAPVDP-LERGG--VIALVGPTGAGKTTT 364 (557)
T ss_pred HHHHCCCCHHHHHHHHHHCC---------CCCCHHH-HHHHHHHHHHHHCCCCCCCH-HHCCC--EEEEECCCCCCCHHH
T ss_conf 99976699999999997483---------3278889-99999999996287777751-54076--478743777673117
Q ss_pred HHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 9999999986148-950782054221004779999851034742223321036899999999997415886998334422
Q gi|254780711|r 117 TAKIAYHLKTLKK-KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN 195 (461)
Q Consensus 117 ~aKLA~~~~~~~~-~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~ 195 (461)
+||||++|..++| ++|+||++||||+||+|||++|++++|||++......+- .+++.. ..++|+||||||||.
T Consensus 365 ~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l----~~~l~~--l~~~~lvliDTaG~~ 438 (557)
T PRK12727 365 IAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESL----LDLLER--LRDYKLVLIDTAGMG 438 (557)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHH----HHHHHH--HCCCCEEEEECCCCC
T ss_conf 99999999997399818999726640879999999999839757982899999----999998--369998999499988
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEE
Q ss_conf 211246899999985138511000310111-2256888898876358440776411576633036777888478730261
Q gi|254780711|r 196 HINDSLMQEISEIKSLTNPHEILLVADALT-GQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIG 274 (461)
Q Consensus 196 ~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig 274 (461)
|.|..+.+++..+. .....+.+||+.|++ +++..++++.|. .++++|+||||+|++++.|.+|++...+++|+.|++
T Consensus 439 ~rd~~~~~~~~~l~-~~~~~~~~Lvl~a~~~~~~l~~~~~~~~-~~~~~~~i~TKlDE~~~~G~~l~~~~~~~lp~~y~t 516 (557)
T PRK12727 439 QRDRALAAQLNWLR-AARQVTSLLVLPANAHFSDLDEVVRRFA-HAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 516 (557)
T ss_pred CCCHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEC
T ss_conf 46999999999875-1477635999968899899999999853-799874899614367870399999999689828975
Q ss_pred CCCCC-CCCCCCCHHHHHHHH
Q ss_conf 58672-321001368899877
Q gi|254780711|r 275 TGEKI-NDLENFFPDRIANRI 294 (461)
Q Consensus 275 ~GE~~-~dle~F~p~~~~~ri 294 (461)
+||+| +||++-++..+++|.
T Consensus 517 ~GQ~VPeDi~~a~~~~Lv~Ra 537 (557)
T PRK12727 517 DGQRVPDDLHRANAASLVLRL 537 (557)
T ss_pred CCCCCCCCHHHCCHHHHHHHH
T ss_conf 898285236438999999999
No 22
>pfam02978 SRP_SPB Signal peptide binding domain.
Probab=99.97 E-value=4.3e-31 Score=257.45 Aligned_cols=100 Identities=47% Similarity=0.725 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 63799999999998511488999998731344234323111678888899999745898786084113357899972326
Q gi|254780711|r 327 KFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGS 406 (461)
Q Consensus 327 ~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~RIA~GS 406 (461)
+|||+|||+|+++++||||++++++||||+++.... .+.+.+++++++|++||+|||++||+||++||+||++|||+||
T Consensus 1 ~Ftl~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~-~~~~~~~~~lk~~~~Ii~SMT~~Er~~P~ll~~SR~~RIA~GS 79 (100)
T pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKLLSMIPGMGKLPKL-AEQELDEKKLKRIEAIIDSMTPKERDNPEIINGSRKRRIAKGS 79 (100)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 988899999999999637899999778785402456-6530158999999999983799988682413867999998006
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 679899999999999999999
Q gi|254780711|r 407 GTNAAKINKLLKLHRQVAEMM 427 (461)
Q Consensus 407 G~~v~eVn~Llk~f~~m~kmm 427 (461)
|++++|||+||+||++|++||
T Consensus 80 G~~~~eVn~Llkqf~~m~kmm 100 (100)
T pfam02978 80 GTSVQEVNKLLKQFKQMKKMM 100 (100)
T ss_pred CCCHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999998529
No 23
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.95 E-value=1e-26 Score=224.08 Aligned_cols=149 Identities=28% Similarity=0.311 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 99999999999852469699999999999998303111269989999999999999871877421000258841899623
Q gi|254780711|r 28 SNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVG 107 (461)
Q Consensus 28 ~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvG 107 (461)
...+..+...|++.+|+..++.+|++.+++.. +. +.....+++.|.+.+.... ........+.||+|||
T Consensus 133 ~~~~~~l~~~L~~~gv~~~~~~~l~~~~~~~~---------~~-~~~~~~l~~~L~~~i~~~~-~~~~~~~~~~vi~lvG 201 (282)
T TIGR03499 133 DPEGAKLYERLEEAGVSEELARELLEKLPERA---------DA-ESAWRWLREALENMLPVKP-EEDEILEQGGVIALVG 201 (282)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---------CH-HHHHHHHHHHHHHHCCCCC-CCCCCCCCCCEEEEEC
T ss_conf 86899999999986999999999999746029---------97-8999999999996477788-7655445672799977
Q ss_pred CCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 443334688999999998614-8950782054221004779999851034742223321036899999999997415886
Q gi|254780711|r 108 LQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDA 186 (461)
Q Consensus 108 l~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~ 186 (461)
|+|||||||+||||++|..+. +++|+||++||||+||+|||++||+.+|||++......| . .++++.+ .++|+
T Consensus 202 PTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~---l-~~~l~~~--~~~d~ 275 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKE---L-AKALERL--RDKDL 275 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHH---H-HHHHHHC--CCCCE
T ss_conf 8887578899999999999738996799980777678999999999995974899399999---9-9999865--79899
Q ss_pred EEEECCC
Q ss_conf 9983344
Q gi|254780711|r 187 VILDTAG 193 (461)
Q Consensus 187 iiiDTaG 193 (461)
|||||||
T Consensus 276 IlIDTaG 282 (282)
T TIGR03499 276 ILIDTAG 282 (282)
T ss_pred EEEECCC
T ss_conf 9981979
No 24
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=98.79 E-value=2.4e-07 Score=76.22 Aligned_cols=148 Identities=22% Similarity=0.302 Sum_probs=99.3
Q ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH---------------HHHH------C
Q ss_conf 5884189962-3443334688999999998614895078205422100477999---------------9851------0
Q gi|254780711|r 97 APSPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR---------------YLGE------Q 154 (461)
Q Consensus 97 ~~~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~---------------~~a~------~ 154 (461)
..++.||++. -..|-||||+++-||.-+.. -|+||+||-||..||.-..-+. .|.+ .
T Consensus 528 ~~~~kvi~vTS~~pgEGKSt~a~nLA~~~A~-~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~ 606 (726)
T PRK09841 528 ETENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGK 606 (726)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCC
T ss_conf 8888689997799999779999999999984-799599982887771077615999998779983899988993302798
Q ss_pred CCCCCCCCC-CCCHHHHHHH-----HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH-HCCH
Q ss_conf 347422233-2103689999-----99999974158869983344222112468999999851385110003101-1122
Q gi|254780711|r 155 IQVDTLEVI-PEQSPEKIAI-----RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA-LTGQ 227 (461)
Q Consensus 155 ~~v~~~~~~-~~~dp~~i~~-----~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq 227 (461)
-++++.... ...+|+++.- +-++.+ .+.||+|||||+=-+..-+.++ +... .|-++||+.+ .|..
T Consensus 607 ~~ldvl~aG~~p~nP~elL~s~~~~~ll~~l-~~~yD~IIiDtPPvl~v~Da~~-----l~~~--~D~~l~Vvr~g~T~~ 678 (726)
T PRK09841 607 GGFDVITRGQVPPNPSELLMRDRMRQLLEWA-NDHYDLVIVDTPPMLAVSDAAV-----VGRS--VGTSLLVARFGLNTA 678 (726)
T ss_pred CCEEEEECCCCCCCHHHHHCCHHHHHHHHHH-HHCCCEEEEECCCCCCCCHHHH-----HHHH--CCEEEEEEECCCCCH
T ss_conf 9989982899997989995876999999999-8139999991999653415999-----9997--895999997996889
Q ss_pred HHHHHH-HHHHH-HCCCCCEEEEECCCC
Q ss_conf 568888-98876-358440776411576
Q gi|254780711|r 228 DAVHLA-RNFDK-IVDLTGIILTRMDGD 253 (461)
Q Consensus 228 ~a~~~a-~~F~~-~~~i~giIlTKlD~~ 253 (461)
+++..+ +.+.+ .+.+.|+|++.+|-.
T Consensus 679 ~~~~~a~~~l~~~~~~v~G~vlN~v~~~ 706 (726)
T PRK09841 679 KEVSLSMQRLEQAGVNIKGAILNGVIKR 706 (726)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 9999999999978997589998288656
No 25
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=98.70 E-value=1.2e-05 Score=63.43 Aligned_cols=142 Identities=19% Similarity=0.319 Sum_probs=87.7
Q ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH---------HHH------------HCCC
Q ss_conf 84189962-3443334688999999998614895078205422100477999---------985------------1034
Q gi|254780711|r 99 SPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR---------YLG------------EQIQ 156 (461)
Q Consensus 99 ~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~---------~~a------------~~~~ 156 (461)
+++.+.++ .-.|.||||++|-||.-+.. .|+||++|-||..||.-..=+. .++ ..-+
T Consensus 102 ~~~~LaItS~~pGEGKS~vAaNLA~~~Aq-~G~RvLLVDaDLRrP~lh~~f~l~~~~GLs~vL~g~~~l~~i~~~~~~~n 180 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQ-LGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALEN 180 (274)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHCCCCCHHHEEECCCCCC
T ss_conf 88389996899999899999999999996-79919999588888447797599997687888459998899051589899
Q ss_pred CCCCCCC-CCCHHHHHHH-----HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH-CCH-H
Q ss_conf 7422233-2103689999-----999999741588699833442221124689999998513851100031011-122-5
Q gi|254780711|r 157 VDTLEVI-PEQSPEKIAI-----RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL-TGQ-D 228 (461)
Q Consensus 157 v~~~~~~-~~~dp~~i~~-----~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~-~Gq-~ 228 (461)
+.+.... ...+|.++.- +-++.. .+.||+|||||+=-+...+.+ -+... -|-++||+-+. |-. +
T Consensus 181 L~VLpaG~~ppnP~eLL~s~~~~~ll~~l-~~~yD~IIiDTPPvl~~sDA~-----ila~~--aDg~LlVvR~~~T~~~~ 252 (274)
T TIGR03029 181 LSVLPAGAIPPNPQELLARPAFTDLLNKV-MGDYDVVIVDTPSAEHSSDAQ-----IVATR--ARGTLIVSRVNETRLHE 252 (274)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHHCCEEEEECCCCCCCCHHH-----HHHHH--CCEEEEEEECCCCCHHH
T ss_conf 78996999998979987358999999999-840999999389865543499-----99986--89799999689888999
Q ss_pred HHHHHHHHHHH-CCCCCEEEEE
Q ss_conf 68888988763-5844077641
Q gi|254780711|r 229 AVHLARNFDKI-VDLTGIILTR 249 (461)
Q Consensus 229 a~~~a~~F~~~-~~i~giIlTK 249 (461)
..+..+.+.+. +++-|+|+.|
T Consensus 253 l~~a~~~L~~~g~~VlGvVLNq 274 (274)
T TIGR03029 253 LTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHHCCCCEEEEEECC
T ss_conf 9999999997799668998487
No 26
>PRK11519 tyrosine kinase; Provisional
Probab=98.69 E-value=9.9e-07 Score=71.55 Aligned_cols=149 Identities=19% Similarity=0.243 Sum_probs=97.4
Q ss_pred CCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH------------------HHH---H
Q ss_conf 25884189962-3443334688999999998614895078205422100477999------------------985---1
Q gi|254780711|r 96 NAPSPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR------------------YLG---E 153 (461)
Q Consensus 96 ~~~~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~------------------~~a---~ 153 (461)
...++.||++. -..|-||||+++-||.-+.. -|+||+||-||..||.-.+.+. ..- .
T Consensus 522 ~~~~~~vi~vTS~~pgEGKSt~a~nLA~~~A~-~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~ 600 (720)
T PRK11519 522 MQAQNNVLMMTGVSPSIGKTFVCANLAAVISQ-TNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTS 600 (720)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHCCCCC
T ss_conf 68887679997089999789999999999983-79919999387777016775399999985998079997899703579
Q ss_pred CCCCCCCCCC-CCCHHHHHH-----HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH-HCC
Q ss_conf 0347422233-210368999-----999999974158869983344222112468999999851385110003101-112
Q gi|254780711|r 154 QIQVDTLEVI-PEQSPEKIA-----IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA-LTG 226 (461)
Q Consensus 154 ~~~v~~~~~~-~~~dp~~i~-----~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da-~~G 226 (461)
.-+++|.... ...+|.++. .+-++.++ +.||+|||||+=-+..-+.+ -+... .|-++||+-+ .|-
T Consensus 601 ~~~l~vl~~G~~~pnp~elL~s~~~~~ll~~l~-~~yD~IIiDtpPv~~v~Da~-----~la~~--aD~~l~Vvr~g~t~ 672 (720)
T PRK11519 601 IANFDLIPRGQVPPNPSELLMSERFAELVAWAS-KNYDLVLIDTPPILAVTDAA-----IVGRH--VGTTLMVARYAVNT 672 (720)
T ss_pred CCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHH-HHCCEEEEECCCCCCCHHHH-----HHHHH--CCEEEEEEECCCCC
T ss_conf 899899769999949899838759999999998-52999999399965235899-----99997--89799999899578
Q ss_pred HHHHHHH-HHHHHH-CCCCCEEEEECCCC
Q ss_conf 2568888-988763-58440776411576
Q gi|254780711|r 227 QDAVHLA-RNFDKI-VDLTGIILTRMDGD 253 (461)
Q Consensus 227 q~a~~~a-~~F~~~-~~i~giIlTKlD~~ 253 (461)
..++..+ +.+.+. +.+.|+|+.++|-.
T Consensus 673 ~~~v~~a~~~l~~~~~~v~G~VlN~v~~~ 701 (720)
T PRK11519 673 LKEVETSLSRFEQNGIPVKGVILNSIFRR 701 (720)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99999999999968997489998897666
No 27
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=98.68 E-value=4.8e-07 Score=73.97 Aligned_cols=148 Identities=24% Similarity=0.301 Sum_probs=77.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH------------------------HHH---HHHHH-H
Q ss_conf 1899623443334688999999998614895078205422100------------------------477---99998-5
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA------------------------AQE---QLRYL-G 152 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a------------------------A~e---QL~~~-a 152 (461)
.+|+|.|=-|+||||+++-+|..+.. .|+||+++++|--..- .++ -++.| .
T Consensus 1 r~i~~~GKGGVGKTT~AaalA~~lA~-~G~kVLlvstDPahsLsd~f~~~~~~~~~~v~~~~nL~a~eid~~~~~~~~~~ 79 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAE-QGKKVLLVSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQ 79 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHCCCCCCCCCEECCCCCCEEEEECHHHHHHHHHH
T ss_conf 98999689855489999999999996-89949999589864488984886678871103668845787288999999999
Q ss_pred HC---CCCCCCC-----------CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-----HHHHHHHHHHHHHCC
Q ss_conf 10---3474222-----------3321036899999999997415886998334422211-----246899999985138
Q gi|254780711|r 153 EQ---IQVDTLE-----------VIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIN-----DSLMQEISEIKSLTN 213 (461)
Q Consensus 153 ~~---~~v~~~~-----------~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d-----~~lm~El~~i~~~~~ 213 (461)
.. +.-.+-. ..++-|-+.....-++......||+|+||||--.|.= -+.++.+.++ ..+
T Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~i~~~~~~~~yD~IViDtaPTGhtLrlL~lP~~l~~~~~~--L~d 157 (254)
T cd00550 80 EVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREI--LSD 157 (254)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCHHHHHHHHHH--CCC
T ss_conf 999988632255668888999863985899999999999976069988998899856799875156999999985--379
Q ss_pred CCCC--CCCCCH--HCCHHHHHHHHHHHH-HCCCCCEEEEECC
Q ss_conf 5110--003101--112256888898876-3584407764115
Q gi|254780711|r 214 PHEI--LLVADA--LTGQDAVHLARNFDK-IVDLTGIILTRMD 251 (461)
Q Consensus 214 p~e~--~lV~da--~~Gq~a~~~a~~F~~-~~~i~giIlTKlD 251 (461)
|..+ ++|.-. +.=.++......+.+ .++++++|+-++=
T Consensus 158 ~~~t~~~lV~~PE~~~v~Et~R~~~~L~~~~i~v~~vvvN~v~ 200 (254)
T cd00550 158 PERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLL 200 (254)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 5655899997787216999999999999779998979995880
No 28
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=98.62 E-value=1.6e-06 Score=69.99 Aligned_cols=38 Identities=37% Similarity=0.448 Sum_probs=35.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 189962344333468899999999861489507820542
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
.+|++.|--|+||||++|-+|.++.+ .|+||+++++|-
T Consensus 2 r~i~~~GKGGVGKTT~AaA~A~~~A~-~G~rvLlvStDP 39 (304)
T pfam02374 2 RWIFFGGKGGVGKTTVSCATAVRLSE-QGKKVLLVSTDP 39 (304)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCC
T ss_conf 19999579857489999999999995-899299994697
No 29
>PHA02518 ParA-like protein; Provisional
Probab=98.58 E-value=8.3e-07 Score=72.17 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=85.8
Q ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8996234-4333468899999999861489507820542210047799998510--347422233210368999999999
Q gi|254780711|r 102 VIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQ--IQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 102 vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~--~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
||.++.. =|+||||++.-||.+|.. .|++|+++-+|..+.+. .|.+. -+-|.+....- .+ . ....+..
T Consensus 2 IIav~n~KGGvGKTT~a~nLA~~la~-~G~~VlliD~DpQ~s~~-----~w~~~r~~~~~~~~~~~~-~~-~-~~~~l~~ 72 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHA-DGHKVLLVDLDPQGSST-----DWAEAREEGEPLIPVVRM-GK-S-IRADLPK 72 (211)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCHH-----HHHHHCCCCCCCCCHHHC-CH-H-HHHHHHH
T ss_conf 89998089997499999999999997-89948999779996788-----999852268997401213-67-7-9999997
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-------HHCC-HHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 97415886998334422211246899999985138511000310-------1112-256888898876358440776411
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVAD-------ALTG-QDAVHLARNFDKIVDLTGIILTRM 250 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~d-------a~~G-q~a~~~a~~F~~~~~i~giIlTKl 250 (461)
. ..+||+|||||+|.+. .++... ..+ -|.++..+. ++.+ .+.++.++..+...+.-+++++..
T Consensus 73 ~-~~~yD~viID~pp~~~---~~~~~a---l~a--aD~vliP~~ps~~d~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ 143 (211)
T PHA02518 73 V-ASGYDYVVVDGAPQDS---ELARAA---LRI--ADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRA 143 (211)
T ss_pred H-CCCCCEEEECCCCCCH---HHHHHH---HHH--CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 4-0678889988999742---999999---995--896999637868789999999999999998665675168886235
Q ss_pred CCCCCCC-HHHHHHHHHCCCHH
Q ss_conf 5766330-36777888478730
Q gi|254780711|r 251 DGDGRGG-AALSMRTVTGKPIK 271 (461)
Q Consensus 251 D~~akgG-~als~~~~~~~PI~ 271 (461)
+..++-. -+.......+.|+.
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~v~ 165 (211)
T PHA02518 144 IKNTQLYREARKALAGYGLPIL 165 (211)
T ss_pred CCCCHHHHHHHHHHHHCCCCCC
T ss_conf 8665699999999998699810
No 30
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=98.57 E-value=1.2e-06 Score=70.94 Aligned_cols=136 Identities=21% Similarity=0.218 Sum_probs=78.2
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH---CCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf 89962-34433346889999999986148950782054221004779999851---0347--422233210368999999
Q gi|254780711|r 102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE---QIQV--DTLEVIPEQSPEKIAIRA 175 (461)
Q Consensus 102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~---~~~v--~~~~~~~~~dp~~i~~~a 175 (461)
||-|+ .=-|+||||++.-||..+.. .|++|+++-+|-.++.. .|.+ +-+. |... ....+......+.
T Consensus 3 vi~~~~~KGG~GKtT~a~~la~~~~~-~g~~V~liD~Dpq~s~~-----~W~~~a~~~~~~~~~~~-v~~~~~~~~l~~~ 75 (231)
T pfam07015 3 LITFCSFKGGAGKTTALMGLCSALAS-DGKRVALFEADENRPLT-----KWRENALRKGTWDPACE-IFNADELPLLEQA 75 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHH-----HHHHHHHHCCCCCCCCC-EECCCCHHHHHHH
T ss_conf 79996179986599999999999996-89959999689986889-----99998764688887652-2205660158999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-----CCHHCCHHHHHHH----HHHHHHCCCCCEE
Q ss_conf 999974158869983344222112468999999851385110003-----1011122568888----9887635844077
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLV-----ADALTGQDAVHLA----RNFDKIVDLTGII 246 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV-----~da~~Gq~a~~~a----~~F~~~~~i~giI 246 (461)
++.+..++||+|||||+|+... +....-... |.++.- +|+-..-+.+..+ +.+...++ ..++
T Consensus 76 ~~~~~~~~yD~VIIDtpg~~s~---~~~~AI~~A-----DlVLIP~qpSplD~~~a~~t~~~i~~~~~~~~~~ip-~avl 146 (231)
T pfam07015 76 YEHAEGSGFDYALADTHGGSSE---LNNTIIASS-----DLLLIPTMLTPLDIDEALATYRYVIELLLTENLAIP-TAIL 146 (231)
T ss_pred HHHHHHCCCCEEEECCCCCCCH---HHHHHHHHC-----CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEE
T ss_conf 9988657999899839985758---999999978-----989977899823399999999999999997378998-0334
Q ss_pred EEECCCC
Q ss_conf 6411576
Q gi|254780711|r 247 LTRMDGD 253 (461)
Q Consensus 247 lTKlD~~ 253 (461)
+|++-..
T Consensus 147 ~tRv~~~ 153 (231)
T pfam07015 147 RQRVPVG 153 (231)
T ss_pred EEECCCC
T ss_conf 5511400
No 31
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.56 E-value=9.8e-07 Score=71.59 Aligned_cols=137 Identities=18% Similarity=0.270 Sum_probs=87.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC---CCCHHHHH----HHHHHHCCCCCCCCCCC---CCHHHHH
Q ss_conf 89962344333468899999999861489507820542---21004779----99985103474222332---1036899
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV---HRPAAQEQ----LRYLGEQIQVDTLEVIP---EQSPEKI 171 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt---~R~aA~eQ----L~~~a~~~~v~~~~~~~---~~dp~~i 171 (461)
||=+.|+.|+||||.+.+|+.+|.. ++++|+++|.|- |.-||+-. +..++..-++-+-+... ....+..
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~-~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~ 79 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA-RGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRA 79 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHH
T ss_conf 9762589978789999999999997-898379999688878668620323545344157998368634666654204688
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC-CCCEEEEEC
Q ss_conf 9999999974158869983344222112468999999851385110003101112256888898876358-440776411
Q gi|254780711|r 172 AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD-LTGIILTRM 250 (461)
Q Consensus 172 ~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~-i~giIlTKl 250 (461)
+++++.....-+||+|||.|.|-.+.+.+. ... -|-+++|++...|.+. |+..=- -+. -+=+++.|.
T Consensus 80 ~~~~i~~l~~~g~D~IiIETvGvGQse~~i-------~~~--aD~~i~v~~p~~GD~i--Q~~K~g-i~e~aDl~vvNK~ 147 (148)
T cd03114 80 TPEVIRVLDAAGFDVIIVETVGVGQSEVDI-------ASM--ADTTVVVMAPGAGDDI--QAIKAG-IMEIADIVVVNKA 147 (148)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHH-------HHH--CCEEEEEECCCCCCHH--HHCCCC-HHHCCCEEEEECC
T ss_conf 999999999759998999748777560265-------543--5669999636887377--611228-5212469999378
Q ss_pred C
Q ss_conf 5
Q gi|254780711|r 251 D 251 (461)
Q Consensus 251 D 251 (461)
|
T Consensus 148 D 148 (148)
T cd03114 148 D 148 (148)
T ss_pred C
T ss_conf 9
No 32
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=98.55 E-value=1.3e-06 Score=70.68 Aligned_cols=135 Identities=19% Similarity=0.194 Sum_probs=77.0
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH---HCCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf 89962-3443334688999999998614895078205422100477999985---10347--422233210368999999
Q gi|254780711|r 102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLG---EQIQV--DTLEVIPEQSPEKIAIRA 175 (461)
Q Consensus 102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a---~~~~v--~~~~~~~~~dp~~i~~~a 175 (461)
||.++ .=-|+||||.+.-||..+.. .|++|+++-+|-.++.. .|. .+-+. +...... .+......++
T Consensus 3 vi~~~~~KGG~GKtT~a~~la~~~~~-~g~~v~~iD~Dpq~s~~-----~W~e~a~~~~~~~~~~~v~~-~~~~~~l~~~ 75 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALAS-DGKRVALFEADENRPLT-----RWKENALRSNTWDPACEVYA-ADELPLLEAA 75 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHH-----HHHHHHHHCCCCCCCCCEEE-CCCHHHHHHH
T ss_conf 79996189987699999999999997-89959999689986889-----99987652589887752340-5652578999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-----CCHHCCHHHHH----HHHHHHHHCCCCCEE
Q ss_conf 999974158869983344222112468999999851385110003-----10111225688----889887635844077
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLV-----ADALTGQDAVH----LARNFDKIVDLTGII 246 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV-----~da~~Gq~a~~----~a~~F~~~~~i~giI 246 (461)
++.+..++||+|||||+|+... ++...-...+ .++.- +|.--.-+.+. +.+.++..++. .++
T Consensus 76 ~e~~~~~~~D~VIIDtpg~~s~---~~~~Ai~~AD-----LVLIP~qPSp~D~~~a~~tv~~i~~~~~~~~~~ip~-~vl 146 (231)
T PRK13849 76 YEDAELQGFDYALADTHGGSSE---LNNTIIASSN-----LLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPT-AIL 146 (231)
T ss_pred HHHHHHCCCCEEEECCCCCCCH---HHHHHHHHCC-----EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEE
T ss_conf 9887536998899818997758---9999999789-----899779998667999999999999999972878865-666
Q ss_pred EEECCC
Q ss_conf 641157
Q gi|254780711|r 247 LTRMDG 252 (461)
Q Consensus 247 lTKlD~ 252 (461)
+|+.-.
T Consensus 147 ltRv~a 152 (231)
T PRK13849 147 RQRVPV 152 (231)
T ss_pred EEECCH
T ss_conf 540504
No 33
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=98.55 E-value=2.7e-06 Score=68.25 Aligned_cols=144 Identities=25% Similarity=0.337 Sum_probs=75.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-------CH--HH------HH-HHHHHHCCCCCCCC----
Q ss_conf 8996234433346889999999986148950782054221-------00--47------79-99985103474222----
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-------PA--AQ------EQ-LRYLGEQIQVDTLE---- 161 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-------~a--A~------eQ-L~~~a~~~~v~~~~---- 161 (461)
+|++.|==|+||||+++-||..+.. .|+||+++++|--+ +. +. +. ...|..........
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~-~G~rvLlvs~DPah~l~d~~~~~L~~~~~~~~~e~~~~~~~~~v~~~~~~~~~~ 79 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAE-EGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAW 79 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9899789966199999999999996-899499995898766532347986513588876667999987501666533311
Q ss_pred ------------CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCH--HC
Q ss_conf ------------3321036899999999997415886998334422211246899999985138511--0003101--11
Q gi|254780711|r 162 ------------VIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHE--ILLVADA--LT 225 (461)
Q Consensus 162 ------------~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e--~~lV~da--~~ 225 (461)
..++.+-........+......||+|+||||=-.|.=.-|..+ ....|.. .++|.-+ +.
T Consensus 80 ~~~~~~~~~~~~~~pg~~E~~~l~~~~~~~~~~~yD~IVvDtpPTGhtlrlL~~~-----~L~d~~~t~~~lVt~Pe~~~ 154 (217)
T cd02035 80 GGEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRE-----LLTDPERTSFRLVTLPEKLP 154 (217)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH-----HHCCCCCCEEEEEECCCCCH
T ss_conf 0011456777615997899999999999985489988998289855699986788-----72488876799995776217
Q ss_pred CHHHHHHHHHHHH-HCCCCCEEEEECC
Q ss_conf 2256888898876-3584407764115
Q gi|254780711|r 226 GQDAVHLARNFDK-IVDLTGIILTRMD 251 (461)
Q Consensus 226 Gq~a~~~a~~F~~-~~~i~giIlTKlD 251 (461)
=.++..-...+++ .+++.++|+.++=
T Consensus 155 ~~et~r~~~~L~~~gi~v~~vVvN~v~ 181 (217)
T cd02035 155 LYETERAITELALYGIPVDAVVVNRVL 181 (217)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 999999999999779988989895882
No 34
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=98.50 E-value=1.5e-06 Score=70.19 Aligned_cols=155 Identities=18% Similarity=0.188 Sum_probs=82.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH---------------------HHHHC-------CCCC
Q ss_conf 3443334688999999998614895078205422100477999---------------------98510-------3474
Q gi|254780711|r 107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR---------------------YLGEQ-------IQVD 158 (461)
Q Consensus 107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~---------------------~~a~~-------~~v~ 158 (461)
|==|+||||+++=||..+.+ .|++|+++-+|.+-+.+.--+. ..... -++.
T Consensus 6 ~KGGVGKTT~a~nLA~~la~-~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (212)
T pfam01656 6 TKGGVGKTTLAANLARALAK-RGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNLDPLL 84 (212)
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCCCCEE
T ss_conf 89980699999999999997-89978998389999625886587643444444101011210024564222455558746
Q ss_pred CCCCCC---CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-C-HHHHHHH
Q ss_conf 222332---1036899999999997415886998334422211246899999985138511000310111-2-2568888
Q gi|254780711|r 159 TLEVIP---EQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-G-QDAVHLA 233 (461)
Q Consensus 159 ~~~~~~---~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-G-q~a~~~a 233 (461)
+.+... ..+................||+|||||++-.... .+.....+|.++.|+.... . .++....
T Consensus 85 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~--------~~~al~~ad~vivv~~p~~~sl~~~~~l~ 156 (212)
T pfam01656 85 LIPSNLSLANFESELILEGGEEGLIKLAYDYVIIDGAPGLGEL--------TANALVAADILVVPIEPEGVAVLGAQRLL 156 (212)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH--------HHHHHHCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 5335015667777779999998766604998999479975599--------99999839989999489769999999999
Q ss_pred HHHHHHCC--CCCEEEEECCCCCCCC---HHHHHHHHHCCCHH
Q ss_conf 98876358--4407764115766330---36777888478730
Q gi|254780711|r 234 RNFDKIVD--LTGIILTRMDGDGRGG---AALSMRTVTGKPIK 271 (461)
Q Consensus 234 ~~F~~~~~--i~giIlTKlD~~akgG---~als~~~~~~~PI~ 271 (461)
+.+. .++ +-|+|++|.|....-- ........++.|..
T Consensus 157 ~~~~-~l~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (212)
T pfam01656 157 ELVE-RLGLKILGVVLNKVDRGDERHLDKEIEALERKTGIPVL 198 (212)
T ss_pred HHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 9999-85996229999148899836630789999999789975
No 35
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=98.49 E-value=4.2e-06 Score=66.79 Aligned_cols=143 Identities=22% Similarity=0.324 Sum_probs=87.8
Q ss_pred CCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH------------H----HHHHC----
Q ss_conf 2588418996234-4333468899999999861489507820542210047799------------9----98510----
Q gi|254780711|r 96 NAPSPLVIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL------------R----YLGEQ---- 154 (461)
Q Consensus 96 ~~~~p~vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL------------~----~~a~~---- 154 (461)
..+++.||++... .|.||||+++-||.-+....+++|++|-||..||.-...+ . .+.+.
T Consensus 31 ~~~~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaDlr~p~l~~~l~~~~~~Gl~d~L~~~~~~l~~~i~~~ 110 (207)
T TIGR03018 31 RKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPT 110 (207)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHCCCCCCHHHHEECC
T ss_conf 46788099997899999889999999999997249859999535789971001388999985677438998756723426
Q ss_pred --CCCCCCCCC-CCCHHHHHH-----HHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH-
Q ss_conf --347422233-210368999-----9999999741588--69983344222112468999999851385110003101-
Q gi|254780711|r 155 --IQVDTLEVI-PEQSPEKIA-----IRATQSARDGGYD--AVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA- 223 (461)
Q Consensus 155 --~~v~~~~~~-~~~dp~~i~-----~~a~~~a~~~~~D--~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da- 223 (461)
-++.+.... ...+|.++. ..-++.. .+.|| +|||||+=-+...+. .-+... -|-++||+.+
T Consensus 111 ~~~~l~vlpag~~~~~~~~ll~s~~~~~li~~l-r~~yd~~~VIiDtPPvl~~~Da-----~~la~~--~D~vllVvr~~ 182 (207)
T TIGR03018 111 NIGRLSLLPAGRRHPNPTELLASQRMRSLLHEL-ARRYPDRIIIIDTPPLLVFSEA-----RALARL--VGQIVLVVEEG 182 (207)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCCEEEEECCCCCCCHHH-----HHHHHH--CCEEEEEEECC
T ss_conf 887555751689899667654269999999999-9737965799838962232369-----999996--89699999799
Q ss_pred HCCHHHHHHH-HHHHHHCCCCCEEE
Q ss_conf 1122568888-98876358440776
Q gi|254780711|r 224 LTGQDAVHLA-RNFDKIVDLTGIIL 247 (461)
Q Consensus 224 ~~Gq~a~~~a-~~F~~~~~i~giIl 247 (461)
-|..+.+..+ +.+. ..++.|+|+
T Consensus 183 ~t~~~~v~~a~~~L~-~~~vlG~Vl 206 (207)
T TIGR03018 183 RTTQEAVKEALSALE-SCKVLGVVL 206 (207)
T ss_pred CCCHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 878999999999866-898069996
No 36
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=98.46 E-value=5.9e-06 Score=65.63 Aligned_cols=155 Identities=17% Similarity=0.270 Sum_probs=100.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---HHH----HHHHHHHHCCCCCCCCCCCCC---
Q ss_conf 5884189962344333468899999999861489507820542210---047----799998510347422233210---
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---AAQ----EQLRYLGEQIQVDTLEVIPEQ--- 166 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---aA~----eQL~~~a~~~~v~~~~~~~~~--- 166 (461)
.++.++|=+.|+.|+||.|.+..|+.+|.. .+++|+++|.|--.| ||+ --+..++..-++-+-+.....
T Consensus 46 ~g~a~~iGiTG~pG~GKStli~~l~~~~~~-~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lg 124 (325)
T PRK09435 46 TGNALRIGITGVPGVGKSTFIEALGMHLIE-QGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLG 124 (325)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 798259974279998688999999999996-7985899997899998886101038888761479984884067788867
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH-CCC-CC
Q ss_conf 3689999999999741588699833442221124689999998513851100031011122568888988763-584-40
Q gi|254780711|r 167 SPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI-VDL-TG 244 (461)
Q Consensus 167 dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~-~~i-~g 244 (461)
..+..+++++.-+..-+||+|||.|.|--+.+.+. ...+ |-+++|+-...|-+. +..+.- +.+ |-
T Consensus 125 g~~~~~~~~~~~~~a~g~d~i~iETvGvGQ~e~~v-------~~~~--d~~~~~~~p~~GD~~----Q~~K~GImEiaDi 191 (325)
T PRK09435 125 GVARKTRETMLLCEAAGFDVILVETVGVGQSETAV-------AGMV--DFFLLLQLPGAGDEL----QGIKKGIMELADL 191 (325)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH-------HHHC--CEEEEEECCCCCCHH----HHHHHHHHHHCCE
T ss_conf 73354999999999779998999706777148899-------8742--668888358876088----9988657750426
Q ss_pred EEEEECCCCCCCCHHHHHHHH
Q ss_conf 776411576633036777888
Q gi|254780711|r 245 IILTRMDGDGRGGAALSMRTV 265 (461)
Q Consensus 245 iIlTKlD~~akgG~als~~~~ 265 (461)
++++|.|++.+.++-.++...
T Consensus 192 ~vVNKaDgd~~~~A~~t~~e~ 212 (325)
T PRK09435 192 IVINKADGDNHTAARRAAAEY 212 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 899776755658999999999
No 37
>KOG0924 consensus
Probab=98.46 E-value=1.3e-05 Score=63.16 Aligned_cols=200 Identities=22% Similarity=0.297 Sum_probs=117.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999998718774210002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r 77 IVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ 156 (461)
Q Consensus 77 iv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~ 156 (461)
.+.++|.+++.. -.||++||-+||||||-+++.-+ ..-.+.+-++.|+.-.|.||+---+..++.++
T Consensus 359 ~~R~~ll~~ir~-----------n~vvvivgETGSGKTTQl~QyL~--edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924 359 ACRDQLLSVIRE-----------NQVVVIVGETGSGKTTQLAQYLY--EDGYADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred HHHHHHHHHHHH-----------CCEEEEEECCCCCCHHHHHHHHH--HCCCCCCCEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 889999999863-----------85799993588985016679998--62245587154357227899999999999858
Q ss_pred CCC-----CCCCCC--CHH---------HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCC
Q ss_conf 742-----223321--036---------89999999999741588699833442221124-6899999985138511000
Q gi|254780711|r 157 VDT-----LEVIPE--QSP---------EKIAIRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILL 219 (461)
Q Consensus 157 v~~-----~~~~~~--~dp---------~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~l 219 (461)
+++ |+...+ .++ --+.++.+...-...|.+||+|-|---..+.+ ||.=|+.... -.-|..++
T Consensus 426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKli 504 (1042)
T KOG0924 426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLI 504 (1042)
T ss_pred CCCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHEEEEEECHHHHCCCCHHHHHHHHHHHHH-HHCCCEEE
T ss_conf 76453112488852047876057874230577977633004440178851143303005899999999987-42263599
Q ss_pred CCCHHCCHHHHHHHHHHHHHCC------CCC------EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCH
Q ss_conf 3101112256888898876358------440------7764115766330367778884787302615867232100136
Q gi|254780711|r 220 VADALTGQDAVHLARNFDKIVD------LTG------IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFP 287 (461)
Q Consensus 220 V~da~~Gq~a~~~a~~F~~~~~------i~g------iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p 287 (461)
|..|++ + |+.|.+.+| |-| ++.||.--..-.-+|+. -+.+|-.+..--|+-+|-+
T Consensus 505 VtSATm--~----a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavk-------q~v~Ihl~~~~GdilIfmt 571 (1042)
T KOG0924 505 VTSATM--D----AQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVK-------QAVQIHLSGPPGDILIFMT 571 (1042)
T ss_pred EEECCC--C----HHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHHHHHHHH-------HHEEEECCCCCCCEEEECC
T ss_conf 762202--4----89998872788601015876423777526855889999876-------5458544689887799527
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 889987735862788999874211
Q gi|254780711|r 288 DRIANRILGMGDVVSLVEKAARNL 311 (461)
Q Consensus 288 ~~~~~riLGmgD~~~l~e~~~~~~ 311 (461)
|-.|+..-.+.+++.+
T Consensus 572 --------GqediE~t~~~i~~~l 587 (1042)
T KOG0924 572 --------GQEDIECTCDIIKEKL 587 (1042)
T ss_pred --------CCCCHHHHHHHHHHHH
T ss_conf --------8763267899999999
No 38
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.43 E-value=3.8e-06 Score=67.12 Aligned_cols=124 Identities=23% Similarity=0.259 Sum_probs=83.5
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----CHHH------------HHHHHHHHCC
Q ss_conf 0002588418996234433346889999999986148950782054221-----0047------------7999985103
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-----PAAQ------------EQLRYLGEQI 155 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-----~aA~------------eQL~~~a~~~ 155 (461)
...+..++.++|+||+..|||||-++=||+.+-. .|++|+++-+|.-- ||.+ +||.-+.
T Consensus 66 ~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~-rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~--- 141 (398)
T COG1341 66 KSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLA-RGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFT--- 141 (398)
T ss_pred CCHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCC---
T ss_conf 2012068738999898676788999999988764-474189996899976667974677412567777777758652---
Q ss_pred CCCCCCC-CCCCHHHHH---HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 4742223-321036899---9999999974158869983344222112468999999851385110003101
Q gi|254780711|r 156 QVDTLEV-IPEQSPEKI---AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 156 ~v~~~~~-~~~~dp~~i---~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
--|+++ .+...|... +.+..+.|++. .|++||||.|--+-- .=++=...+.++++|++++.+=++
T Consensus 142 -~~FvG~isP~~~~~~~i~~v~rL~~~a~~~-~~~ilIdT~GWi~G~-~g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 142 -LYFVGSISPQGFPGRYIAGVARLVDLAKKE-ADFILIDTDGWIKGW-GGLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred -EEEEECCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEECCCCCEECC-HHHHHHHHHHHHCCCCEEEEECCC
T ss_conf -279851477777689999999999986516-877999699843074-278999998865097789993144
No 39
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=98.43 E-value=3e-06 Score=67.89 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=89.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC------HHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210------368999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ------SPEKIAIRA 175 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~------dp~~i~~~a 175 (461)
|+++.|.=||||||.+-.|.... +++++++++..|.-..+ +|.-. -..-+++++....|- +....+.++
T Consensus 2 v~iitGFLGsGKTTll~~ll~~~--~~~~~~avI~Ne~g~~~-iD~~l--l~~~~~~v~el~~GciCc~~~~d~~~~l~~ 76 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRDN--REGLKIAVIVNDFGETG-IDAEL--LRETGAEIVELNNGCICCTIREDLSMVLEA 76 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC--CCCCCEEEEEECCCCHH-HHHHH--HHHCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 69993488788999999999844--48984799993365302-07999--870696189974886645433369999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC-CCEEEEECCCC
Q ss_conf 9999741588699833442221124689999998513851100031011122568888988763584-40776411576
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDL-TGIILTRMDGD 253 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i-~giIlTKlD~~ 253 (461)
+.......+|+|+|.|+|-- .-. ++.++......+.++-|+||...++..+....|.+.+.. +-+|++|.|--
T Consensus 77 l~~~~~~~~d~iiIE~sGla-~p~----~i~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~~~Qi~~AD~vvlNK~Dl~ 150 (174)
T pfam02492 77 LLELKLPRLDLLFIETTGLA-CPA----PVLDLRSDLGLDGVVTVVDVKNFTEGEDIPEKAPDQIAFADLIVINKTDLA 150 (174)
T ss_pred HHHCCCCCCCEEEEECCCCC-CHH----HHHHHHHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCCEEEEEHHHCC
T ss_conf 98557899999999587667-707----777653202654599999723433002007899999987699998466537
No 40
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.37 E-value=2e-05 Score=61.65 Aligned_cols=155 Identities=19% Similarity=0.319 Sum_probs=99.2
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---HHH--H--HHHHHHHCCCCCCCCCCCC
Q ss_conf 00025884189962344333468899999999861489507820542210---047--7--9999851034742223321
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---AAQ--E--QLRYLGEQIQVDTLEVIPE 165 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---aA~--e--QL~~~a~~~~v~~~~~~~~ 165 (461)
+.+..++++||=+.|+.|+||.|.+.+|...|.. .|.+|++++.|--.| ||+ | -++.++..-|+-+-+..+.
T Consensus 44 l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~sr 122 (323)
T COG1703 44 LYPRTGNAHVIGITGVPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSR 122 (323)
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCC
T ss_conf 7311799837873179988668899999999997-796789999889999878530120766776446998178426877
Q ss_pred ---CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH-CC
Q ss_conf ---03689999999999741588699833442221124689999998513851100031011122568888988763-58
Q gi|254780711|r 166 ---QSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI-VD 241 (461)
Q Consensus 166 ---~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~-~~ 241 (461)
...+.-.++++.-+..-+||+|||.|.|--|.|.+- ... .|-+++|+-.-.|-+ .+.++.- +.
T Consensus 123 G~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I-------~~~--aDt~~~v~~pg~GD~----~Q~iK~GimE 189 (323)
T COG1703 123 GTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI-------ANM--ADTFLVVMIPGAGDD----LQGIKAGIME 189 (323)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-------HHH--CCEEEEEECCCCCCH----HHHHHHHHHH
T ss_conf 651016688999999998618988999814788415577-------652--166899965788827----8888741465
Q ss_pred C-CCEEEEECCCCCCCCHHHHHHH
Q ss_conf 4-4077641157663303677788
Q gi|254780711|r 242 L-TGIILTRMDGDGRGGAALSMRT 264 (461)
Q Consensus 242 i-~giIlTKlD~~akgG~als~~~ 264 (461)
+ +=+++.|.| +.|+..+...
T Consensus 190 iaDi~vINKaD---~~~A~~a~r~ 210 (323)
T COG1703 190 IADIIVINKAD---RKGAEKAARE 210 (323)
T ss_pred HHHEEEEECCC---HHHHHHHHHH
T ss_conf 40335672567---2658999999
No 41
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=98.35 E-value=1.5e-05 Score=62.61 Aligned_cols=43 Identities=35% Similarity=0.427 Sum_probs=34.7
Q ss_pred CCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 88418996234-433346889999999986148950782054221
Q gi|254780711|r 98 PSPLVIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 98 ~~p~vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
.++.||-++-- =|||||||+.-||+++.. .|++|++|-+|.+-
T Consensus 119 ~~~kVIaVaN~KGGVGKTTtav~LA~~LA~-~G~RVLlIDLDPQg 162 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLAL-QGYRVLAVDLDPQA 162 (405)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCHHH
T ss_conf 998289997888776599999999999997-79988999645617
No 42
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=98.34 E-value=1e-05 Score=63.82 Aligned_cols=163 Identities=23% Similarity=0.267 Sum_probs=90.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-----------HHHH-HHHH--HC-----------CC
Q ss_conf 8996234433346889999999986148950782054221004-----------7799-9985--10-----------34
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA-----------QEQL-RYLG--EQ-----------IQ 156 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA-----------~eQL-~~~a--~~-----------~~ 156 (461)
.|.+.|==|+|||||++-||+.+.. .|+||+++-||..-... +..+ .... +. -+
T Consensus 2 ~iaiyGKGGVGKTTts~NLaaaLA~-~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~g 80 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAE-MGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGG 80 (212)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCC
T ss_conf 5999889835687789999999998-699699990389987330311997787199998752786644566789966887
Q ss_pred CCCCCCC---CC-----CHHHHHHHHHHHH--HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH---
Q ss_conf 7422233---21-----0368999999999--974158869983344222112468999999851385110003101---
Q gi|254780711|r 157 VDTLEVI---PE-----QSPEKIAIRATQS--ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--- 223 (461)
Q Consensus 157 v~~~~~~---~~-----~dp~~i~~~a~~~--a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--- 223 (461)
+.++... .+ ..... ..+-++. .....||+||+|+.|-..-..-.+ - +.. .--+++++|..+
T Consensus 81 v~~veaggp~~g~~~ag~~i~~-~~~ll~~~~~~~~~~D~IliD~lGdvv~~gf~~-p---i~~-~~Ad~vlIvtt~E~~ 154 (212)
T cd02117 81 VKCVESGGPEPGVGCAGRGVIT-AVNLLEKEGFAEDDLDVVLYDVLGDVVCGGFAM-P---IRE-GKADEIYIVTSGEFM 154 (212)
T ss_pred EEEEECCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEECCCCCEECCCCC-C---CCC-CCCCEEEEECCCCHH
T ss_conf 0899889977676545411788-999999741002579999996588540356334-3---211-668889998069357
Q ss_pred -HCC-HHHHHHHHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHH
Q ss_conf -112-2568888988763--58440776411576633036777888478730
Q gi|254780711|r 224 -LTG-QDAVHLARNFDKI--VDLTGIILTRMDGDGRGGAALSMRTVTGKPIK 271 (461)
Q Consensus 224 -~~G-q~a~~~a~~F~~~--~~i~giIlTKlD~~akgG~als~~~~~~~PI~ 271 (461)
..+ .+-.+.++.|.+. +.+.|+|.++.|.+..-..+=-.+..++.||.
T Consensus 155 Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~~~~~~i~~f~~~~g~~vl 206 (212)
T cd02117 155 ALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVI 206 (212)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 8898899999999997367981489998467888649999999998399189
No 43
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.31 E-value=3.4e-06 Score=67.46 Aligned_cols=169 Identities=23% Similarity=0.252 Sum_probs=119.6
Q ss_pred CCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC---CHHHHHH
Q ss_conf 5884-18996234433346889999999986148950782054221004779999851034742223321---0368999
Q gi|254780711|r 97 APSP-LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE---QSPEKIA 172 (461)
Q Consensus 97 ~~~p-~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~---~dp~~i~ 172 (461)
..+| ..|=+.|+-||||||-+-|+...++.+ .++++|+.|.|.---.+.|+.. .++|++....+ ..++...
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~--~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~ 83 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDE--YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMN 83 (202)
T ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH--CCEEEEECEEECHHHHHHHHHC---CCCEEEEECCCCCCCCCHHHH
T ss_conf 25864899961799867899999999999752--7768996404006559999737---798068740387658867889
Q ss_pred HHHHHHHHHCC--CCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH--HHHHHHCCCCCEE
Q ss_conf 99999997415--88699833442221--124689999998513851100031011122568888--9887635844077
Q gi|254780711|r 173 IRATQSARDGG--YDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA--RNFDKIVDLTGII 246 (461)
Q Consensus 173 ~~a~~~a~~~~--~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a--~~F~~~~~i~giI 246 (461)
..|++...... .|+++|-++|-+-- +-+| .-+..+.|+|.+-|.+.-.-. -.|. -+=+|
T Consensus 84 ~~ai~~l~~~~~~~Dll~iEs~GNL~~~~sp~L-----------~d~~~v~VidvteGe~~P~K~gP~i~~----aDllV 148 (202)
T COG0378 84 LEAIEELVLDFPDLDLLFIESVGNLVCPFSPDL-----------GDHLRVVVIDVTEGEDIPRKGGPGIFK----ADLLV 148 (202)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCEECCCCCCH-----------HHCEEEEEEECCCCCCCCCCCCCCEEE----EEEEE
T ss_conf 999999863177677899923764324468041-----------304699999878888876557996467----41899
Q ss_pred EEECCCCCCCCHHHHHHHH------HCCCHHHEE--CCCCCCCCCCC
Q ss_conf 6411576633036777888------478730261--58672321001
Q gi|254780711|r 247 LTRMDGDGRGGAALSMRTV------TGKPIKAIG--TGEKINDLENF 285 (461)
Q Consensus 247 lTKlD~~akgG~als~~~~------~~~PI~fig--~GE~~~dle~F 285 (461)
+||.|=-.-.|+-|.+... -+.||.|.. |||.++++-.|
T Consensus 149 InK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~ 195 (202)
T COG0378 149 INKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRF 195 (202)
T ss_pred EEHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 85677387728669999999998499998899847878689999999
No 44
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.29 E-value=7.8e-06 Score=64.71 Aligned_cols=119 Identities=22% Similarity=0.070 Sum_probs=76.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
+..++++|+.|+||||.+.++|+.+... +..|..+++++++.....+.. .....................+.+
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~-~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEEEHHHHHHHHHHHHH------HHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 9789999999702999999999872668-996899875998988898765------300011221051999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHH----HHHHCCCCCCCCCCCHHC
Q ss_conf 7415886998334422211246899999----985138511000310111
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISE----IKSLTNPHEILLVADALT 225 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~----i~~~~~p~e~~lV~da~~ 225 (461)
+...+++|+||.++++............ ......+.....|+.++.
T Consensus 75 ~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n 124 (148)
T smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 84499899982750214762079999999999851765789989999569
No 45
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=98.28 E-value=2.9e-05 Score=60.35 Aligned_cols=44 Identities=34% Similarity=0.431 Sum_probs=35.4
Q ss_pred CCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 2588418996234-43334688999999998614895078205422
Q gi|254780711|r 96 NAPSPLVIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 96 ~~~~p~vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
...++.||.++-. =|||||||++-||+++.. .|++|++|-.|.+
T Consensus 100 ~g~~~~VIav~N~KGGVGKTTtav~LA~~LA~-~G~RVLvIDLDPQ 144 (387)
T TIGR03453 100 GGEHLQVIAVTNFKGGSGKTTTSAHLAQYLAL-RGYRVLAIDLDPQ 144 (387)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCH
T ss_conf 99988089997888765699999999999997-7998899953701
No 46
>PRK13768 GTPase; Provisional
Probab=98.28 E-value=0.00051 Score=50.84 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=63.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--------------HHHHHCCCCCCCCCCCC
Q ss_conf 4189962344333468899999999861489507820542210047799--------------99851034742223321
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--------------RYLGEQIQVDTLEVIPE 165 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--------------~~~a~~~~v~~~~~~~~ 165 (461)
++.++++|+-||||||-|+.+..|+.. .+++|.+|.-|- |+ |.+ +..-+..+. .++|
T Consensus 2 ~~~~~ViGpaGSGKsT~~~~l~~~l~~-~~r~~~vvNLDP---A~-e~~pY~~~iDIRd~i~~~dVM~~~~L----GPNG 72 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLVGALSDWLEE-QGYDVAIVNLDP---AV-EYLPYKPDIDVREYVSAREIMRKYGL----GPNG 72 (253)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCC---CC-CCCCCCCCCCHHHHCCHHHHHHHHCC----CCCH
T ss_conf 718999899999889999999999997-699759997898---66-58999988637861789999988198----9646
Q ss_pred CH--HHHHHHHHH----HHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf 03--689999999----999741588699833442221--1246899999985138511000310111
Q gi|254780711|r 166 QS--PEKIAIRAT----QSARDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADALT 225 (461)
Q Consensus 166 ~d--p~~i~~~a~----~~a~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da~~ 225 (461)
.= ..+....-+ +.......|++|+||+|-... ..+-+..+-+......+.-+++++|+.-
T Consensus 73 ali~~~e~l~~~~d~l~~~i~~~~~dY~i~D~PGQiElft~~~~~~~i~~~L~~~~~~~~v~l~D~~~ 140 (253)
T PRK13768 73 ALIASVDLLLTKAEEIKEEIERLDADYVLVDTPGQMELFAFRESGRYLVEKLSSGSKSLSVYLIDAVL 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEECHHH
T ss_conf 89999999999899999998515887599826874432223407999999986368628999845056
No 47
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=98.28 E-value=4.2e-05 Score=59.19 Aligned_cols=141 Identities=15% Similarity=0.295 Sum_probs=92.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---HHH----HHHHHHHHCCCCCCCCCCCCC---
Q ss_conf 5884189962344333468899999999861489507820542210---047----799998510347422233210---
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---AAQ----EQLRYLGEQIQVDTLEVIPEQ--- 166 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---aA~----eQL~~~a~~~~v~~~~~~~~~--- 166 (461)
.++-.+|=+.|+.|+||+|.+.+|+.+|.. .+++|+++|.|---| ||+ --+..++..-+| |+.+-...
T Consensus 26 ~g~a~~iGiTG~PGaGKStli~~l~~~~~~-~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~v-fiRs~~srg~l 103 (267)
T pfam03308 26 TGRAHRVGITGVPGAGKSTLIEALGMELRR-RGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGA-FIRSSPSRGAL 103 (267)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCE-EEEECCCCCCC
T ss_conf 599559987689988799999999999996-8986899997899988886300107777650589985-88645778888
Q ss_pred -HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH-CCC-C
Q ss_conf -3689999999999741588699833442221124689999998513851100031011122568888988763-584-4
Q gi|254780711|r 167 -SPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI-VDL-T 243 (461)
Q Consensus 167 -dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~-~~i-~ 243 (461)
..+..+++++..+..-+||+|||-|.|=-|.+.+. .+. .|-++||+-...|-+. +..+.- +.+ |
T Consensus 104 GGls~~t~~~i~lleaaGfD~IivETVGVGQsE~~v-------~~~--aD~~llv~~Pg~GDei----Q~iKaGImEiaD 170 (267)
T pfam03308 104 GGLSRATREAILLLDAAGFDVIIIETVGVGQSEVDI-------ANM--ADTFVLVTIPGGGDDL----QGIKAGLMEIAD 170 (267)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH-------HHH--CCEEEEEECCCCCHHH----HHHHHHHHHHCC
T ss_conf 871476999999999779999999247777530355-------541--5768999558876088----898753765354
Q ss_pred CEEEEECCC
Q ss_conf 077641157
Q gi|254780711|r 244 GIILTRMDG 252 (461)
Q Consensus 244 giIlTKlD~ 252 (461)
-++++|.|.
T Consensus 171 i~vVNKaD~ 179 (267)
T pfam03308 171 IYVVNKADL 179 (267)
T ss_pred EEEEECCCH
T ss_conf 899966764
No 48
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=98.27 E-value=5.4e-06 Score=65.93 Aligned_cols=86 Identities=24% Similarity=0.320 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-CCHH--HHHHHHHHHCCCCCCC----CCCCCCHHH---------HHHH
Q ss_conf 3334688999999998614895078205422-1004--7799998510347422----233210368---------9999
Q gi|254780711|r 110 GSGKTTTTAKIAYHLKTLKKKKILMASLDVH-RPAA--QEQLRYLGEQIQVDTL----EVIPEQSPE---------KIAI 173 (461)
Q Consensus 110 GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~-R~aA--~eQL~~~a~~~~v~~~----~~~~~~dp~---------~i~~ 173 (461)
|+|||||+.-||..+.. .|++|++|-+|.. +... ++.-..|++..++++. ..-...+.. .-..
T Consensus 11 GvGKTTtavnLA~aLA~-~G~rVllIDlDpqq~slt~~l~nr~~~~~~~~~~l~~P~~~~l~~~~~~~~~~~~~~~~~L~ 89 (261)
T pfam09140 11 GSGKSTTAVHVAVALLY-LGARVATIDLDLRQRTLTRYIENRAATAERTGLDLPVPKHLCLPDDVSEVFDGESADDARLE 89 (261)
T ss_pred CCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 87299999999999998-89978999799999851234430355655138653466534455067776134557899999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 999999741588699833442221
Q gi|254780711|r 174 RATQSARDGGYDAVILDTAGRNHI 197 (461)
Q Consensus 174 ~a~~~a~~~~~D~iiiDTaGR~~~ 197 (461)
+++... ...||+|||||+|.+..
T Consensus 90 ~al~~l-~~~yDfIlIDcPPsl~~ 112 (261)
T pfam09140 90 EAVADL-EQDADFIVIDTPGSDSP 112 (261)
T ss_pred HHHHHH-HCCCCEEEEECCCCCCH
T ss_conf 999998-75799999969985739
No 49
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=98.27 E-value=1.5e-05 Score=62.50 Aligned_cols=166 Identities=20% Similarity=0.184 Sum_probs=84.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH------------HHHHHHHHH-------------HCCC
Q ss_conf 899623443334688999999998614895078205422100------------477999985-------------1034
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA------------AQEQLRYLG-------------EQIQ 156 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a------------A~eQL~~~a-------------~~~~ 156 (461)
+|.+-|==|+|||||++-||.-|.. .|+||+++-+|.+=+. ..+-|..-+ ...+
T Consensus 2 ~iai~GKGGVGKTTtsvNLA~aLA~-~GkrVlliDaD~~~~~~~~llg~~~~~~l~d~l~~~~~~~~~~~~~vi~~~~~g 80 (269)
T pfam00142 2 KIAIYGKGGIGKSTTSQNTSAALAE-MGKKVLIVGCDPKADSTRLILGGKAQPTIIDTLREKGLVEDVELEDVVKKGYGG 80 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHEECCCCC
T ss_conf 5899899976889999999999998-799099984589987414443898888478776046770224074501337787
Q ss_pred CCCCCCCC---CCHHH-HHHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--C
Q ss_conf 74222332---10368-999999999974----15886998334422211246899999985138511000310111--2
Q gi|254780711|r 157 VDTLEVIP---EQSPE-KIAIRATQSARD----GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--G 226 (461)
Q Consensus 157 v~~~~~~~---~~dp~-~i~~~a~~~a~~----~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--G 226 (461)
+.+..... +.... .-...+++.... ..||++|||+.|=.....- .......-.+++++|+.+-. =
T Consensus 81 v~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~-----~~~i~~~~A~~viiv~t~E~~al 155 (269)
T pfam00142 81 IRCVESGGPEPGVGCAGRGVITAIDLLEELGAYDDLDFVLYDVLGDVVCGGF-----AMPIREGKAQEVYIVTSGEMMAL 155 (269)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCEEEEECCCCEEECCC-----CCCHHHCCCCEEEEEECCCHHHH
T ss_conf 2688689986563211078999999999821021288898533674024340-----05334435887999828947899
Q ss_pred HHHHHHHHH---HHHH--CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEEC
Q ss_conf 256888898---8763--584407764115766330367778884787302615
Q gi|254780711|r 227 QDAVHLARN---FDKI--VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGT 275 (461)
Q Consensus 227 q~a~~~a~~---F~~~--~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~ 275 (461)
+++....+. +.+. +.+.|++.+.-..+..-+.+=.+....+ +.|+|+
T Consensus 156 ~~a~~l~~~i~~~~~~~~~~i~giv~n~~~~~~~~~~~~~~~~~~~--~~~lg~ 207 (269)
T pfam00142 156 YAANNICKGILKYAKSGGVRLGGLICNSRKVDDERELIDAFAEALG--TQMIHF 207 (269)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC--CCEEEE
T ss_conf 9999999999998505796278998268654115799999999819--947997
No 50
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=98.27 E-value=9.1e-06 Score=64.21 Aligned_cols=159 Identities=19% Similarity=0.110 Sum_probs=79.9
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHH---------H----------HHHH--HHHCCCCCC
Q ss_conf 89962-344333468899999999861489507820542210047---------7----------9999--851034742
Q gi|254780711|r 102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQ---------E----------QLRY--LGEQIQVDT 159 (461)
Q Consensus 102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~---------e----------QL~~--~a~~~~v~~ 159 (461)
||.++ +==|+|||||+.-||+.+.+ .|++|++|=+|....... + .++. +...-|+.+
T Consensus 3 iIav~n~KGGVGKTT~avNLA~~La~-~G~rVLlIDlDpQ~~l~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (246)
T TIGR03371 3 VIAIVGIKGGVGRTTLTAALASALKL-LGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLAGEDWRAAAYRSSDGVLF 81 (246)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHCCCCHHHHHEECCCCEEE
T ss_conf 99997599985499999999999996-89978999759998503224888753456999982799888952557898289
Q ss_pred CCCCC----------CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHH
Q ss_conf 22332----------1036899999999997415886998334422211246899999985138511000310111-225
Q gi|254780711|r 160 LEVIP----------EQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-GQD 228 (461)
Q Consensus 160 ~~~~~----------~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~ 228 (461)
+.... ..++ ....+.+.......||+|||||+.-+..-. . .. ..-.|+++.|+.+.. ...
T Consensus 82 ip~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~~~D~viiD~pp~l~~~~---~---~a--l~aad~vlipv~~~~~s~~ 152 (246)
T TIGR03371 82 LPYGTLSADEREAYQAHDA-GWLARLLQQLDLAARDWVLIDLPRGPSPIT---D---QA--LAAADLVLVVVNADAACYA 152 (246)
T ss_pred EECCCCCHHHHHHHCCCCH-HHHHHHHHHHCCCCCCEEEEECCCCCCHHH---H---HH--HHHCCEEEEEECCCHHHHH
T ss_conf 7089847778987604478-999999986303679889994899874999---9---99--9988947998189989999
Q ss_pred ----HHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHH-HHHHCCCH
Q ss_conf ----688889887635844077641157663303-6777-88847873
Q gi|254780711|r 229 ----AVHLARNFDKIVDLTGIILTRMDGDGRGGA-ALSM-RTVTGKPI 270 (461)
Q Consensus 229 ----a~~~a~~F~~~~~i~giIlTKlD~~akgG~-als~-~~~~~~PI 270 (461)
.......+......-+++++++|..++... ++.. ....+.|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~l~~~~~~~~ 200 (246)
T TIGR03371 153 TLHQLALALLARSVPPDGIHYLINQFQPARQLSRDVRAVLRATLGSRL 200 (246)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 999999999984277675178863026401589999999999749881
No 51
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.26 E-value=1.3e-05 Score=63.12 Aligned_cols=163 Identities=20% Similarity=0.230 Sum_probs=79.7
Q ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH------------HHHHHHH-HHC----------C
Q ss_conf 4189962344-33346889999999986148950782054221004------------7799998-510----------3
Q gi|254780711|r 100 PLVIMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA------------QEQLRYL-GEQ----------I 155 (461)
Q Consensus 100 p~vIllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA------------~eQL~~~-a~~----------~ 155 (461)
+.+|-++..- |+|||||+.-||+++.+.+++||+++-+|-....- ...+-.. ... -
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVVIE 81 (259)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCCCCHHHHHHCCCCCCCHHHCCCCCC
T ss_conf 76999985788851999999999999983899789997899941777846664323103667632333221022034456
Q ss_pred CCCCCCCCCCCH-HHHHHH------HHHHHH---HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCHH
Q ss_conf 474222332103-689999------999999---74158869983344222112468999999851385110-0031011
Q gi|254780711|r 156 QVDTLEVIPEQS-PEKIAI------RATQSA---RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEI-LLVADAL 224 (461)
Q Consensus 156 ~v~~~~~~~~~d-p~~i~~------~a~~~a---~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~-~lV~da~ 224 (461)
+++++.....-. +.++.. ..+... ...+||+|||||++.+.. -...-+..-..++-|-+. .+-+.++
T Consensus 82 ~l~~ip~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~yD~iiID~pp~l~~--l~~nal~asd~vliP~~~~~~~~~~l 159 (259)
T COG1192 82 GLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVKDDYDYIIIDTPPSLGV--LTLNALAAADHVLIPVQPEFLDLEGL 159 (259)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHH--HHHHHHHHHCCEEECCCCCHHHHHHH
T ss_conf 7312357600010045665421178999999752026999899899986167--77999998275567047508689889
Q ss_pred CC-HHHHHHHHHHH-HHCCCCCEEEEECCCCCCC-CHHHHHHH
Q ss_conf 12-25688889887-6358440776411576633-03677788
Q gi|254780711|r 225 TG-QDAVHLARNFD-KIVDLTGIILTRMDGDGRG-GAALSMRT 264 (461)
Q Consensus 225 ~G-q~a~~~a~~F~-~~~~i~giIlTKlD~~akg-G~als~~~ 264 (461)
.. .+.+.....++ +.+.+-+++.|++|...+- ...+....
T Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 202 (259)
T COG1192 160 EQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLADEVLQELK 202 (259)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 9999999999985245323256743534742015789999999
No 52
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=98.23 E-value=1.1e-05 Score=63.72 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=41.5
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEECC-CCC
Q ss_conf 999987187742100025884189962344-3334688999999998614895078205-422
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKILMASL-DVH 140 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~lv~~-Dt~ 140 (461)
+||-+.|+.. |-.....+|.||.++--- |||||||+.-||+++.. .|++|++|-| |-.
T Consensus 88 ~~lR~~~~~~--p~R~~g~~~~VIAVaNqKGGvGKTTTavnLA~~LAl-~G~RVLlID~LDPQ 147 (388)
T PRK13705 88 NHMRDVFGTR--LRRAEDEFPPVIGVAAHKGGVYKTSVSVHLAQDLAL-KGLRVLLVEGNDPQ 147 (388)
T ss_pred HHHHHHHCCC--CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC
T ss_conf 9999996438--899999987289995278885599999999999997-79908999587888
No 53
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.21 E-value=8.5e-06 Score=64.45 Aligned_cols=97 Identities=28% Similarity=0.419 Sum_probs=58.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC-------------HHHH---------H---H-HHHHH
Q ss_conf 4189962344333468899999999861489507820542210-------------0477---------9---9-99851
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP-------------AAQE---------Q---L-RYLGE 153 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~-------------aA~e---------Q---L-~~~a~ 153 (461)
..+++|+|==|+||||++|-+|.++... |++|++|++|.--. -++. . + +.|.+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~ 80 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDE 80 (322)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHH
T ss_conf 3799993688545899999999999975-990799984898744765423047851125888754660689999999999
Q ss_pred -------CCCC--------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf -------0347--------4222332103689999999999741588699833442221
Q gi|254780711|r 154 -------QIQV--------DTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHI 197 (461)
Q Consensus 154 -------~~~v--------~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~ 197 (461)
.+.. +....-+|-|-+.....-.++..+..||+|++|||.-.|+
T Consensus 81 v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~T 139 (322)
T COG0003 81 VKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHT 139 (322)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH
T ss_conf 99999741265542125788986098889999999999987526898899848970878
No 54
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.20 E-value=2.3e-05 Score=61.12 Aligned_cols=149 Identities=26% Similarity=0.360 Sum_probs=78.5
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCHH-------------HHH
Q ss_conf 2344333468899999999861489507820542210047799998510-34742223321036-------------899
Q gi|254780711|r 106 VGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQ-IQVDTLEVIPEQSP-------------EKI 171 (461)
Q Consensus 106 vGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~-~~v~~~~~~~~~dp-------------~~i 171 (461)
-|==|+||||+++-||..+ ++|+++-+|.+-|...--|..-.+. ..+.........+| ...
T Consensus 6 SgKGGVGKTT~a~nLA~~l-----~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (179)
T cd03110 6 SGKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVTEV 80 (179)
T ss_pred ECCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHHHHCCCHHHHHHHH
T ss_conf 5899860999999999974-----28719994189985777718765632122304653351506653235176889999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH-CC-HH---HHHHHHHHHHHCCCCCEE
Q ss_conf 99999999741588699833442221124689999998513851100031011-12-25---688889887635844077
Q gi|254780711|r 172 AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL-TG-QD---AVHLARNFDKIVDLTGII 246 (461)
Q Consensus 172 ~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~-~G-q~---a~~~a~~F~~~~~i~giI 246 (461)
.++.......+.||+|||||+--... ..+.-+. .-|.+++|.... .. .+ +++.++.+. +++ |+|
T Consensus 81 ~~~~~~~~~~~~~D~viiD~Ppg~~~--~~~~al~------~ad~~iiVttP~~~si~d~~r~i~l~~~~~--~~~-gvV 149 (179)
T cd03110 81 RKHAKEIAKAEGAELIIIDGPPGIGC--PVIASLT------GADAALLVTEPTPSGLHDLERAVELVRHFG--IPV-GVV 149 (179)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCH--HHHHHHH------CCCEEEEECCCCHHHHHHHHHHHHHHHHCC--CCE-EEE
T ss_conf 99999986443799899818999757--8999997------399499981994789999999999999829--978-999
Q ss_pred EEECCCCCCCCH-HHHHHHHHCCCH
Q ss_conf 641157663303-677788847873
Q gi|254780711|r 247 LTRMDGDGRGGA-ALSMRTVTGKPI 270 (461)
Q Consensus 247 lTKlD~~akgG~-als~~~~~~~PI 270 (461)
++|.|....++. .-.+..+.++|+
T Consensus 150 ~Nr~~~~~~~~~~i~~~~~~~~vp~ 174 (179)
T cd03110 150 INKYDLNDEIAEEIEDYCEEEGIPI 174 (179)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCE
T ss_conf 9688788763489999999809998
No 55
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.20 E-value=7.8e-05 Score=57.11 Aligned_cols=192 Identities=19% Similarity=0.218 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999999871877421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r 76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI 155 (461)
Q Consensus 76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~ 155 (461)
++=+|||-+.||+.- ...+.+++.|-+|+|||+.+..+++...+ +|.+|..+++.--+-.=++|++.++--+
T Consensus 7 ~~~~d~ld~~lggGi-------p~gs~~li~G~~GtGKsi~~~~~~~~~l~-~g~~~~yis~e~t~~~~i~qm~s~g~di 78 (230)
T PRK08533 7 ELDGDELHKRLGGGI-------PFGSIILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSSQLTTTEFIKQMMSLGYDI 78 (230)
T ss_pred ECCCHHHHHHHCCCC-------CCCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 057135788717898-------89848999868998789999999999987-8986999994389999999999869981
Q ss_pred ----------CCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCEEEEECCCCC-CC--HH----HHHHHHHHHHHHCCCCCC
Q ss_conf ----------47422233210-36899999999997415886998334422-21--12----468999999851385110
Q gi|254780711|r 156 ----------QVDTLEVIPEQ-SPEKIAIRATQSARDGGYDAVILDTAGRN-HI--ND----SLMQEISEIKSLTNPHEI 217 (461)
Q Consensus 156 ----------~v~~~~~~~~~-dp~~i~~~a~~~a~~~~~D~iiiDTaGR~-~~--d~----~lm~El~~i~~~~~p~e~ 217 (461)
=+|.|+...+. .-.....+-++..+....|+|+|||..-+ .+ +. +++..++++...-+ -+
T Consensus 79 ~~~~~~G~l~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gk--tI 156 (230)
T PRK08533 79 NKKLISGKLLYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNK--VI 156 (230)
T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCC--EE
T ss_conf 7997579679996134335404578999999732664379899990531885167778999999999999985898--89
Q ss_pred CCCCCHH-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHH
Q ss_conf 0031011-1225688889887635844077641157663303677788847873026158672321001368
Q gi|254780711|r 218 LLVADAL-TGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPD 288 (461)
Q Consensus 218 ~lV~da~-~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~ 288 (461)
++.+|-. ...+.... +.. -.+++|-.+... -||-.-.... =.+|-|....+.+.=+|+.+
T Consensus 157 ilTv~p~~~~e~~l~~---lrs--~aDv~i~L~~~~--vGg~~~r~i~----V~K~~ga~~~~~~~I~F~V~ 217 (230)
T PRK08533 157 ILTANPKELPESVLLI---LRT--ASTILIRLEVKV--FGGDLKNSAK----IVKYNMAKGSFQKIIPFRVE 217 (230)
T ss_pred EEEECCCCCCHHHHHH---HHE--EEEEEEEEEEEE--CCCEEEEEEE----EEEECCCCCCCCCEEEEEEC
T ss_conf 9995633136245442---041--048999987361--0988999999----99844898777864789980
No 56
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=98.19 E-value=2.5e-05 Score=60.91 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=94.2
Q ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH----------------------HHHHHHHHHHC-C
Q ss_conf 4189962-3443334688999999998614895078205422100----------------------47799998510-3
Q gi|254780711|r 100 PLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA----------------------AQEQLRYLGEQ-I 155 (461)
Q Consensus 100 p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a----------------------A~eQL~~~a~~-~ 155 (461)
-.+++.. ==.|.|||||.+=+|.-|.. -|+|+|||=+|+..|- -.++-=+-.+. -
T Consensus 19 ~K~l~itS~~~~eGKsT~S~NiA~~fAq-aGyKTLlIDgD~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~i~~T~ise 97 (207)
T TIGR01007 19 IKVLLITSVKAGEGKSTTSANIAVSFAQ-AGYKTLLIDGDMRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDAICETNISE 97 (207)
T ss_pred EEEEEEEECCCCCCCEEEEHHHHHHHHH-CCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCCC
T ss_conf 0589984110588862410788999985-685588875465866036786588876563332214545333420265467
Q ss_pred CCCCCCCC-CCCHHHHHHH----HHHHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHH
Q ss_conf 47422233-2103689999----999999741588699833442221-12468999999851385110003101-11225
Q gi|254780711|r 156 QVDTLEVI-PEQSPEKIAI----RATQSARDGGYDAVILDTAGRNHI-NDSLMQEISEIKSLTNPHEILLVADA-LTGQD 228 (461)
Q Consensus 156 ~v~~~~~~-~~~dp~~i~~----~a~~~a~~~~~D~iiiDTaGR~~~-d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~ 228 (461)
+..++.+. ..-+|.++.. ..+=..-.+.||+||||||==... |... |.+. .+..+||++| -+-.+
T Consensus 98 nL~vi~sG~vPPNPt~LL~s~~F~~l~e~~~~~fD~iiiDTPPig~V~DAai------~a~~--~d~~~LV~~A~~~~k~ 169 (207)
T TIGR01007 98 NLDVITSGPVPPNPTELLQSSNFKTLIETLRKYFDYIIIDTPPIGTVIDAAI------IARA--VDASILVTDAGKIKKR 169 (207)
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH------HHHH--HCCEEEEEECCCCCHH
T ss_conf 8727517887877547888899999999987168889995188666788999------9987--2977988722532646
Q ss_pred HHHHHHHHHHHCC--CCCEEEEECCCC
Q ss_conf 6888898876358--440776411576
Q gi|254780711|r 229 AVHLARNFDKIVD--LTGIILTRMDGD 253 (461)
Q Consensus 229 a~~~a~~F~~~~~--i~giIlTKlD~~ 253 (461)
.+.=|+.==+..| +=||||-|+|.+
T Consensus 170 ~v~KAK~~LEq~G~~~LGvvLNK~d~s 196 (207)
T TIGR01007 170 EVKKAKEQLEQAGSKFLGVVLNKVDIS 196 (207)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 789999999861784115888882576
No 57
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.18 E-value=5.8e-05 Score=58.06 Aligned_cols=150 Identities=19% Similarity=0.282 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 99999999999871877421000258841899623443334688999999998614895078205422100477999985
Q gi|254780711|r 73 MVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLG 152 (461)
Q Consensus 73 ~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a 152 (461)
.-+..+.++|.+.+.. -.|+.++|.+||||||-+-+.....-. +..-.+++++-.|.||..=-+-.|
T Consensus 49 LPv~~~~~~i~~ai~~-----------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvA 115 (845)
T COG1643 49 LPVTAVRDEILKAIEQ-----------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVA 115 (845)
T ss_pred CCCHHHHHHHHHHHHH-----------CCEEEEECCCCCCHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 9818889999999986-----------978998679988758788999996001--668759965843899999999999
Q ss_pred HCCCCCC-----CCCCCC-----CHHHHHHHHHH------HHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCC
Q ss_conf 1034742-----223321-----03689999999------999741588699833442221124-689999998513851
Q gi|254780711|r 153 EQIQVDT-----LEVIPE-----QSPEKIAIRAT------QSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPH 215 (461)
Q Consensus 153 ~~~~v~~-----~~~~~~-----~dp~~i~~~a~------~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~ 215 (461)
+.++.++ |....+ ....+++-+|+ ......+|++||||-|---..+.+ ++.=|+++.....||
T Consensus 116 eel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 116 EELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred HHHCCCCCCEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98389867654379996226787714689514799999843802045877997013355688899999999998646887
Q ss_pred CCCCCCCHHCCHHHHHHHHHHH
Q ss_conf 1000310111225688889887
Q gi|254780711|r 216 EILLVADALTGQDAVHLARNFD 237 (461)
Q Consensus 216 e~~lV~da~~Gq~a~~~a~~F~ 237 (461)
-.++|++||...+ .-.+-|.
T Consensus 196 LKiIimSATld~~--rfs~~f~ 215 (845)
T COG1643 196 LKLIIMSATLDAE--RFSAYFG 215 (845)
T ss_pred CEEEEEECCCCHH--HHHHHCC
T ss_conf 0599972535889--9997628
No 58
>pfam02881 SRP54_N SRP54-type protein, helical bundle domain.
Probab=98.18 E-value=2.8e-06 Score=68.14 Aligned_cols=56 Identities=27% Similarity=0.447 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 989999999999999985246969999999999999830311126998999999999999
Q gi|254780711|r 23 SETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDEL 82 (461)
Q Consensus 23 ~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL 82 (461)
+++.++++++|++.+||+|||+++++.++++++++... .+++++.+.+.++++++|
T Consensus 22 ~~~~i~~~l~ele~~Li~aDvg~~~~~~ii~~l~~~~~----~~~~~~~~~i~~~l~e~L 77 (77)
T pfam02881 22 GEKKIDELLEELEEALLEADVGVETTEKIIERLKELVG----RKGLSDPEEIKKALKEEL 77 (77)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHC
T ss_conf 89860899999999999812468999999999999998----717999999999999769
No 59
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=98.16 E-value=8.8e-05 Score=56.68 Aligned_cols=39 Identities=31% Similarity=0.413 Sum_probs=34.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 1899623443334688999999998614895078205422
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
.+|.+.|==|+|||||++-||.-|.+ .|+||+++-+|-+
T Consensus 2 r~Iai~GKGGVGKTTtavNLA~aLa~-~GkkVlliDaDpq 40 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE-MGKKVMIVGCDPK 40 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCC
T ss_conf 58999799857789999999999998-7994999865799
No 60
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.13 E-value=4.3e-05 Score=59.10 Aligned_cols=139 Identities=21% Similarity=0.256 Sum_probs=77.8
Q ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9962-344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 103 IMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 103 Illv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
|.++ |==|+||||+++-||..+.+ .|++|+++-+|..-+. +.-..+.. .....+. .+.+
T Consensus 2 Iav~s~KGGVGKTT~a~NLA~aLa~-~g~~vllvD~D~~~~~-------l~~~~~~~---~~~~~~~----~~vl----- 61 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQ-LGYKVVLIDADLGLRN-------LDLILGLE---NRVVYTL----HDVL----- 61 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCC-------CHHHCCCC---CCCCCHH----HCCC-----
T ss_conf 8997399987099999999999997-7991899958999998-------36661765---5665313----1126-----
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-C-HHHHHHHHHHHH-HCCCCCEEEEECCCCCCCCH
Q ss_conf 15886998334422211246899999985138511000310111-2-256888898876-35844077641157663303
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-G-QDAVHLARNFDK-IVDLTGIILTRMDGDGRGGA 258 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-G-q~a~~~a~~F~~-~~~i~giIlTKlD~~akgG~ 258 (461)
.-|+|||||+....... ..... ..|++++|+.... . .++....+.+++ ..+.-|+|+++.+.......
T Consensus 62 -~gD~viiD~ppg~~~~~------~~~l~--~ad~vlvv~~p~~~sl~~~~~~~~~~~~~~~~~~~vv~Nr~~~~~~~~~ 132 (179)
T cd02036 62 -AGDYILIDSPAGIERGF------ITAIA--PADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGG 132 (179)
T ss_pred -CCCEEEEECCCCCCHHH------HHHHH--HCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH
T ss_conf -69999997999988899------99998--4681256378858899999999999982599646999845467666367
Q ss_pred --HHHHHHHHCCCH
Q ss_conf --677788847873
Q gi|254780711|r 259 --ALSMRTVTGKPI 270 (461)
Q Consensus 259 --als~~~~~~~PI 270 (461)
.-.+....+.|+
T Consensus 133 ~~~~~~~~~l~~~v 146 (179)
T cd02036 133 DMVEDIEEILGVPL 146 (179)
T ss_pred HHHHHHHHHCCCCE
T ss_conf 79999998559967
No 61
>PRK10818 cell division inhibitor MinD; Provisional
Probab=98.11 E-value=7.7e-05 Score=57.16 Aligned_cols=153 Identities=18% Similarity=0.259 Sum_probs=78.8
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-----------HHHHHHHH------H-------CCC
Q ss_conf 89962-34433346889999999986148950782054221004-----------77999985------1-------034
Q gi|254780711|r 102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA-----------QEQLRYLG------E-------QIQ 156 (461)
Q Consensus 102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA-----------~eQL~~~a------~-------~~~ 156 (461)
||.+. |==|+|||||+.-||..|.. .|+||+++-+|..-+.. ++-...+. + .-+
T Consensus 4 vIaV~s~KGGVGKTT~avNLA~aLA~-~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i~~~~~~~ 82 (270)
T PRK10818 4 IIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (270)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHEEECCCCCC
T ss_conf 99997899984189999999999997-79968999689999888734576776666689883699858890544687699
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH----HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHH
Q ss_conf 7422233210368999999999----97415886998334422211246899999985138511000310111--22568
Q gi|254780711|r 157 VDTLEVIPEQSPEKIAIRATQS----ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAV 230 (461)
Q Consensus 157 v~~~~~~~~~dp~~i~~~a~~~----a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~ 230 (461)
+.+.......+...+....++. .+..+||+|||||+--+... .+....-.|++++|.-.-. =.++.
T Consensus 83 l~ilpa~~~~~~~~~~~~~~~~~l~~l~~~~yDyIiID~ppgl~~~--------~~~al~aad~vlvv~tpe~~al~da~ 154 (270)
T PRK10818 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--------ALMALYFADEAIITTNPEVSSVRDSD 154 (270)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH--------HHHHHHHCCEEEEECCCCHHHHHHHH
T ss_conf 7997999647675545999999999777659989998899986689--------99999858968997389788998799
Q ss_pred HHHHHHHH---HC-----CC-CCEEEEECCC-CCCCCHHHHHH
Q ss_conf 88898876---35-----84-4077641157-66330367778
Q gi|254780711|r 231 HLARNFDK---IV-----DL-TGIILTRMDG-DGRGGAALSMR 263 (461)
Q Consensus 231 ~~a~~F~~---~~-----~i-~giIlTKlD~-~akgG~als~~ 263 (461)
...+.|.. .. ++ .++++|+.|. ....+..+++.
T Consensus 155 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (270)
T PRK10818 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSME 197 (270)
T ss_pred HHHHHHHHHHHHHHCCCCCHHCCEEEEEECHHHCCHHHHCCHH
T ss_conf 9999999877765335201001258842453123211001299
No 62
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=98.11 E-value=7.4e-05 Score=57.28 Aligned_cols=147 Identities=18% Similarity=0.359 Sum_probs=90.6
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---HHH--HH--HHHHH------HCCCCC
Q ss_conf 100025884189962344333468899999999861489507820542210---047--79--99985------103474
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---AAQ--EQ--LRYLG------EQIQVD 158 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---aA~--eQ--L~~~a------~~~~v~ 158 (461)
.+.+..+.-++|=+.|+.|+||.|.+-||...+.. +|++|++||.|--=| ||+ |. |+-++ ..=+|
T Consensus 30 ~i~p~~GnA~~vG~TG~PGaGKSTl~~~l~~~lrR-rG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~- 107 (333)
T TIGR00750 30 RILPKTGNAHVVGITGVPGAGKSTLVEKLIMELRR-RGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGV- 107 (333)
T ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf 86243279078766468888577799999899976-5976899988797597551454568877544222233228985-
Q ss_pred CCCCCCCC----HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH
Q ss_conf 22233210----36899999999997415886998334422211246899999985138511000310111225688889
Q gi|254780711|r 159 TLEVIPEQ----SPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR 234 (461)
Q Consensus 159 ~~~~~~~~----dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~ 234 (461)
|+.+.+.+ -.+.-+.+.+.-+..-+||+|||-|-|=-|.+-+ |.+.+.. -+++.| +-+|-| .+
T Consensus 108 FIRs~ptrG~lGGls~at~~~~~lldA~G~DVI~vETVGVGQSEVd-------i~~~aDT-~v~v~~-pg~GDd----~Q 174 (333)
T TIGR00750 108 FIRSMPTRGSLGGLSKATRELVKLLDAAGYDVILVETVGVGQSEVD-------IINMADT-FVVVTI-PGTGDD----VQ 174 (333)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHH-------HHHHHCE-EEEEEC-CCCCCH----HH
T ss_conf 6767766675257879999999999863898799984157524878-------8734150-589854-887834----66
Q ss_pred HHHHH-CCC-CCEEEEECCCC
Q ss_conf 88763-584-40776411576
Q gi|254780711|r 235 NFDKI-VDL-TGIILTRMDGD 253 (461)
Q Consensus 235 ~F~~~-~~i-~giIlTKlD~~ 253 (461)
..+.- +.| |=+++-|-|+.
T Consensus 175 ~iKaG~mEiaDI~VVNKaD~~ 195 (333)
T TIGR00750 175 GIKAGVMEIADIYVVNKADGE 195 (333)
T ss_pred HHHHHHHEEEEEEEEECCCCC
T ss_conf 665443023248788168876
No 63
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=98.09 E-value=0.00013 Score=55.40 Aligned_cols=166 Identities=22% Similarity=0.253 Sum_probs=87.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH------------HHHHHHHHH------------CCC
Q ss_conf 18996234433346889999999986148950782054221004------------779999851------------034
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA------------QEQLRYLGE------------QIQ 156 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA------------~eQL~~~a~------------~~~ 156 (461)
..|.+.|==|+|||||++-||+.|.+.+|+||++|.||-.--.- .|.|+.... .-+
T Consensus 3 ~~iaiyGKGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk~dST~~l~g~~~~~tv~d~l~~~~~~~~~~e~ii~~g~~g 82 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGFKG 82 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCC
T ss_conf 38999899854465459999999996479889997978876136776089878839999986288755388887537898
Q ss_pred CCCCCCC---CC----CHHHHHHHHHHHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HC
Q ss_conf 7422233---21----036899999999997--4158869983344222112468999999851385110003101--11
Q gi|254780711|r 157 VDTLEVI---PE----QSPEKIAIRATQSAR--DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LT 225 (461)
Q Consensus 157 v~~~~~~---~~----~dp~~i~~~a~~~a~--~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~ 225 (461)
+.+.... ++ ..-+-.+.+-++... ...+|+|++|+.|=.--..= .--.+....+|+++|..+ |.
T Consensus 83 v~cVEaGgp~pG~gcagrgii~~~~lle~~~~~~~~~D~Vl~DvLGdVvcGgF-----a~Pir~~~AdeV~IVts~E~ms 157 (275)
T PRK13233 83 IRCVESGGPEPGVGCAGRGVITAITLMEEHGAYEDDLDFVFFDVLGDVVCGGF-----AMPIRDGKAQEVYIVASGEMMA 157 (275)
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC-----CCCCCCCCCCEEEEEECCCHHH
T ss_conf 57986899986665576312358888998097434688899841561105551-----0343136688899994683799
Q ss_pred CHHHHHHHHH---HHH--HCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHH
Q ss_conf 2256888898---876--358440776411576633036777888478730
Q gi|254780711|r 226 GQDAVHLARN---FDK--IVDLTGIILTRMDGDGRGGAALSMRTVTGKPIK 271 (461)
Q Consensus 226 Gq~a~~~a~~---F~~--~~~i~giIlTKlD~~akgG~als~~~~~~~PI~ 271 (461)
=..|-++.+. |.+ .+.+.|+|++..+.+..--.+=.....++.|+.
T Consensus 158 L~aannI~~~l~~~~~~~~~~l~Gii~N~r~~~~e~~~v~~fa~~ig~~vi 208 (275)
T PRK13233 158 LYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQLI 208 (275)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 999999999999985058963899997178886079999999998599579
No 64
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.09 E-value=0.00011 Score=56.11 Aligned_cols=106 Identities=20% Similarity=0.217 Sum_probs=65.5
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC---CCC
Q ss_conf 99987187742100025884189962344333468899999999861489507820542210047799998510---347
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQ---IQV 157 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~---~~v 157 (461)
+|-++||+.-. .-.+++++|..|+||||.|-.+|....+ .+.+|+.+++.-|++.-+.|+....-. -++
T Consensus 11 ~lD~~LgGGi~-------~G~itei~G~pG~GKTtl~lq~a~~~~~-~g~~vlYidtE~~~~er~~qi~~~~~~~~~~~i 82 (224)
T PRK09361 11 SLDELLGGGIE-------RGTITQIYGPPGSGKTNICIQLAVEAAR-QGKKVIYIDTEGLSPERFKQIAGEDFEELLSNI 82 (224)
T ss_pred HHHHHHCCCCC-------CCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHCCCHHHHHHCC
T ss_conf 99986269988-------8879999899998599999999999997-499099967876788999998565734542061
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 42223321036899999999997415886998334422
Q gi|254780711|r 158 DTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN 195 (461)
Q Consensus 158 ~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~ 195 (461)
.++.... -+....+-..++....+++++|+||..--+
T Consensus 83 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~lvVIDSi~~~ 119 (224)
T PRK09361 83 IIFEPSS-FEEQREAIQKAEKIAKENVGLIVLDSATSL 119 (224)
T ss_pred EEECCCC-HHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 4724798-899999999999875058738999623010
No 65
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=98.08 E-value=0.00016 Score=54.80 Aligned_cols=197 Identities=23% Similarity=0.297 Sum_probs=106.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-----------CCHHHHHHHHHH---HCC-----------C
Q ss_conf 899623443334688999999998614895078205422-----------100477999985---103-----------4
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH-----------RPAAQEQLRYLG---EQI-----------Q 156 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~-----------R~aA~eQL~~~a---~~~-----------~ 156 (461)
+|.+.|=-|+|||||++-|++-|.. .|+||++|.||-- -+--+|.|+... +.+ +
T Consensus 2 kiaiyGKGGIGKSTttaNl~aaLA~-~G~kVl~IgcDpk~Dst~~L~g~~~~tvld~l~~~~~~~~~~~~~d~v~~g~~g 80 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAK-RGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGG 80 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCHHHHHHCCCCC
T ss_conf 7999779965787789999999998-799599977899515567526988683999998608866641477875307678
Q ss_pred CCCCCCC---CC----CHHHHHHHHHHHHHH-HCCCCEEEEECCCCCC---CHHHHHHHHHHHHHHCCCCCCCCCCCH--
Q ss_conf 7422233---21----036899999999997-4158869983344222---112468999999851385110003101--
Q gi|254780711|r 157 VDTLEVI---PE----QSPEKIAIRATQSAR-DGGYDAVILDTAGRNH---INDSLMQEISEIKSLTNPHEILLVADA-- 223 (461)
Q Consensus 157 v~~~~~~---~~----~dp~~i~~~a~~~a~-~~~~D~iiiDTaGR~~---~d~~lm~El~~i~~~~~p~e~~lV~da-- 223 (461)
+.+.... .+ ..-+..+.+-++... .+.||+||+|+.|--- --..+ . --++++.|.++
T Consensus 81 v~cvEaGgP~pg~Gcagrgi~~~~~lL~~l~~~~~~D~Vl~DvlgdVvcgGFa~pi-~---------~Ad~~~iVTs~e~ 150 (267)
T cd02032 81 VDCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGGFAAPL-N---------YADYALIVTDNDF 150 (267)
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC-C---------CCCEEEEEECCCH
T ss_conf 45766589999988776404899999987166434778999536654456656761-0---------0688999956718
Q ss_pred HCCHHHHHHHHHHHH-----HCCCCCEEEEECCCCCCCCHHH-HHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 112256888898876-----3584407764115766330367-7788847873026158672321001368899877358
Q gi|254780711|r 224 LTGQDAVHLARNFDK-----IVDLTGIILTRMDGDGRGGAAL-SMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM 297 (461)
Q Consensus 224 ~~Gq~a~~~a~~F~~-----~~~i~giIlTKlD~~akgG~al-s~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm 297 (461)
|.=.+|-++++.-.+ .+.+.|+|..+.|+ ...+ -.+..++.|+.- .-|.+..-..+++-|+
T Consensus 151 ~sl~aAn~I~~~i~~~~~~~~~rl~GlI~Nr~~~----~~~i~~fa~~lg~~lig---------~VP~d~~V~~se~~g~ 217 (267)
T cd02032 151 DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK----TDLIDKFVEAVGMPVLA---------VLPLIEDIRRSRVKGK 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHHHHHHCCCEEE---------ECCCCHHHHHHHHCCC
T ss_conf 7899999999999997533797642278746985----78999999972994699---------6699338899987398
Q ss_pred CCHHHHHHHHHHHH--H--HHHHHHHHHHHHCC
Q ss_conf 62788999874211--2--67899888653104
Q gi|254780711|r 298 GDVVSLVEKAARNL--N--EKQAALTAKKIAKG 326 (461)
Q Consensus 298 gD~~~l~e~~~~~~--d--~~~~~~l~~k~~~g 326 (461)
+++|-+++.- . -++..++++++.++
T Consensus 218 ----tvie~~p~~~~~s~~a~~Yr~LA~~i~~n 246 (267)
T cd02032 218 ----TLFEMDESDEELAYRCDYYLLIADQLLAG 246 (267)
T ss_pred ----EEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf ----68984899843789999999999999839
No 66
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.06 E-value=0.00032 Score=52.40 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=91.5
Q ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEE-----CC-CCCCCHHHHHHHHHHHCCC-----CCCCCCCC-----
Q ss_conf 8996234-433346889999999986148950782-----05-4221004779999851034-----74222332-----
Q gi|254780711|r 102 VIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMA-----SL-DVHRPAAQEQLRYLGEQIQ-----VDTLEVIP----- 164 (461)
Q Consensus 102 vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv-----~~-Dt~R~aA~eQL~~~a~~~~-----v~~~~~~~----- 164 (461)
+|+..|. +|+|||+.++-|++++++ +|.+|+.. .+ +..+..-...++..+.... .|+.-..+
T Consensus 1 ~ifI~GT~T~vGKT~vt~~L~~~l~~-~G~~v~~~KPv~tG~~~~~~~~Da~~~~~~~~~~~~~~~~~p~~~~~p~sP~~ 79 (223)
T PRK00090 1 VLFVTGTDTGVGKTVVTAALAQALRE-QGYRVAGYKPVQSGCDGGLRNGDALALQRLSGLPLDYELVNPYRFEEPLSPHL 79 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHH
T ss_conf 98998689997699999999999997-89948997512048988997279999999808999867605402588989899
Q ss_pred -------CCHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCHH-HHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHHHH
Q ss_conf -------1036899999999997415886998334422--2112-468999999851385110003101112--256888
Q gi|254780711|r 165 -------EQSPEKIAIRATQSARDGGYDAVILDTAGRN--HIND-SLMQEISEIKSLTNPHEILLVADALTG--QDAVHL 232 (461)
Q Consensus 165 -------~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~--~~d~-~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~~~ 232 (461)
.-|... +.++++.. .+.+|++||.-||-+ +.+. ..+.++ .+..+ -.++||.++..| ..++-.
T Consensus 80 aa~~~g~~i~~~~-i~~~~~~l-~~~~d~vlvEGaGGl~~Pl~~~~~~~Dl---a~~l~-~pvILV~~~~lG~inhtllt 153 (223)
T PRK00090 80 AARLEGVTIDLEK-ISAALREL-AQQADLVLVEGAGGLLVPLTDDLTLADL---AAQLQ-LPVILVVGVKLGCINHTLLT 153 (223)
T ss_pred HHHHHCCCCCHHH-HHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHH---HHHHC-CCEEEEECCCCCHHHHHHHH
T ss_conf 9999098468999-99999999-8318989994688655675678788999---99968-89899976988809999998
Q ss_pred HHHHH-HHCCCCCEEEEECCCCCC--CCHHHHHHHHHCCCHHHEECCCCCC
Q ss_conf 89887-635844077641157663--3036777888478730261586723
Q gi|254780711|r 233 ARNFD-KIVDLTGIILTRMDGDGR--GGAALSMRTVTGKPIKAIGTGEKIN 280 (461)
Q Consensus 233 a~~F~-~~~~i~giIlTKlD~~ak--gG~als~~~~~~~PI~fig~GE~~~ 280 (461)
+++.. ..+.+-|+|+.+++++.. --..-.+...+++|+ +|+==.++
T Consensus 154 ~eal~~~gl~v~GvI~N~~~~~~~~~~~~~~~l~~~~gvPv--LG~iP~~~ 202 (223)
T PRK00090 154 LEAIRARGLPLAGWVANGVPPEGLRHAENLATLAELLPAPL--LGRLPYLA 202 (223)
T ss_pred HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCE--EEECCCCC
T ss_conf 99999689948999996858836677768999998549988--99758999
No 67
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=98.05 E-value=0.00016 Score=54.81 Aligned_cols=162 Identities=20% Similarity=0.220 Sum_probs=94.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----------CHHHHHHHHHHHC----------CCCCCC
Q ss_conf 8996234433346889999999986148950782054221-----------0047799998510----------347422
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-----------PAAQEQLRYLGEQ----------IQVDTL 160 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-----------~aA~eQL~~~a~~----------~~v~~~ 160 (461)
-|.+.|==|.|||||++-||+.+.. ++||+++.||-.. |--.+.|+.+.+. -|+.+.
T Consensus 4 ~iAiyGKGGIGKSTt~~NlaaalA~--g~rVl~igcDpk~dst~~L~G~~~ptvl~~l~~~~~~~~~dvv~~g~~gi~cv 81 (264)
T PRK13231 4 KIAIYGKGGIGKSTTVSNMAAAYSS--DNSTLVIGCDPKADTTRTLVGKRIPTVLDTLKDNRQPELEDIIYEGYNNTLCV 81 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHCCCCCCHHHHHHHCCCCCHHHHEEECCCCEEEE
T ss_conf 8999789854788899999999987--99779985688850246761999883889863127777656312178984997
Q ss_pred CCCCCCHH--------HHHHHHHHHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCCHH
Q ss_conf 23321036--------899999999997--4158869983344222112468999999851385110003101--11225
Q gi|254780711|r 161 EVIPEQSP--------EKIAIRATQSAR--DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LTGQD 228 (461)
Q Consensus 161 ~~~~~~dp--------~~i~~~a~~~a~--~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~Gq~ 228 (461)
.... ..| +-.+.+-++... ...+|+|++|+.|-.--..--| -+ +.---+|+++|..+ |.=.+
T Consensus 82 esGg-pepg~gcagrgi~~~~~lLe~~~~~~~~~D~vl~Dvlgdvvcggfa~----Pi-r~~~Adev~IVts~e~msLya 155 (264)
T PRK13231 82 ESGG-PEPGVGCAGRGVIVAMNLLEKLGVFDNDPDVVIYDVLGDVVCGGFSV----PL-REDYADEVYIVTSGEYMSLYA 155 (264)
T ss_pred ECCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEC----CC-CCCCCCEEEEEECCCHHHHHH
T ss_conf 3799-88776656521768989998726422479879994358720566704----55-426698899994785899999
Q ss_pred HHHHHHHHHH-HCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHH
Q ss_conf 6888898876-358440776411576633036777888478730
Q gi|254780711|r 229 AVHLARNFDK-IVDLTGIILTRMDGDGRGGAALSMRTVTGKPIK 271 (461)
Q Consensus 229 a~~~a~~F~~-~~~i~giIlTKlD~~akgG~als~~~~~~~PI~ 271 (461)
|.++++.+.+ ...+.|+|.+..+.+..-..+=..+..+|.|+.
T Consensus 156 AnnI~~~i~~~~~rl~GiI~N~r~~~~e~~iv~~fa~~~g~~vl 199 (264)
T PRK13231 156 ANNIAKGIKKLKGKLGGIICNCRNVKNEVEIVSEFASLIGSRII 199 (264)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 99999999995464420896068988779999999997199689
No 68
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.05 E-value=8.7e-05 Score=56.74 Aligned_cols=132 Identities=23% Similarity=0.349 Sum_probs=87.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CCCC-----CCCHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742-----2233-----2103689
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LEVI-----PEQSPEK 170 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~~~-----~~~dp~~ 170 (461)
.|+.++|-+||||||-+-|+..-.- .|....++++--.|.||+-=-+-.|+..+.++ |... +...-+.
T Consensus 90 qVvii~GeTGsGKTTQiPq~~le~g--~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VGY~VRf~~~~s~~t~i~ 167 (1295)
T PRK11131 90 QVVIVAGETGSGKTTQLPKICLELG--RGIKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTMVK 167 (1295)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC--CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 9699976899987889999999627--99999899779659999999999999819998998888945698879997799
Q ss_pred HHHHHHHH------HHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHH
Q ss_conf 99999999------9741588699833442221124-6899999985138511000310111225688889887
Q gi|254780711|r 171 IAIRATQS------ARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFD 237 (461)
Q Consensus 171 i~~~a~~~------a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~ 237 (461)
.+-+|+-- -..++|++||||-|---..+.+ |+-=|+++.. -.|+-.+.+++||+ |+-.-++-|+
T Consensus 168 ~~TdGiLL~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~-~R~dLKvIimSATi--d~e~fs~yF~ 238 (1295)
T PRK11131 168 LMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDLKVIITSATI--DPERFSRHFN 238 (1295)
T ss_pred EECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCC--CHHHHHHHCC
T ss_conf 97656999986209987887779986855688019999999999983-39998899955868--9799996579
No 69
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.04 E-value=0.00029 Score=52.80 Aligned_cols=169 Identities=16% Similarity=0.228 Sum_probs=98.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHH
Q ss_conf 8996234433346889999999986148950782054221004779999851034742-------223321036899999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-------LEVIPEQSPEKIAIR 174 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-------~~~~~~~dp~~i~~~ 174 (461)
|.++.|-=||||||.+-.|- ...++++++++--|.-. ..+|.--. ++ ...++ +.+....|...-..+
T Consensus 6 VtiltGFLGaGKTTlL~~lL---~~~~~~riaVivNEfGe-v~iD~~li-~~-~~~~v~eL~nGCiCCs~~~dl~~~l~~ 79 (317)
T PRK11537 6 VTLLTGFLGAGKTTLLRHIL---NEQHGYKIAVIENEFGE-VSVDDQLI-GD-RATQIKTLTNGCICCSRSNELEDALLD 79 (317)
T ss_pred EEEEEECCCCCHHHHHHHHH---HCCCCCCEEEEEECCCC-CCCHHHHH-HC-CCCCEEEECCCCEEEEECCHHHHHHHH
T ss_conf 89983088889999999997---27789978999837614-53329887-35-653268844773687305228999999
Q ss_pred HHHHHHHC--CCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf 99999741--58869983344222112468999---999851385110003101112256888898876358-4407764
Q gi|254780711|r 175 ATQSARDG--GYDAVILDTAGRNHINDSLMQEI---SEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD-LTGIILT 248 (461)
Q Consensus 175 a~~~a~~~--~~D~iiiDTaGR~~~d~~lm~El---~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~-i~giIlT 248 (461)
-++..... .+|+|||-|+| ...=..+++.+ ..+...+.-+-++=|+||..+++..+.-..+.+.+. -+-+++|
T Consensus 80 l~~~~~~~~~~~D~IiIEtsG-lAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~~~~l~~~~~~~~Qi~~AD~illn 158 (317)
T PRK11537 80 LLDNLDRGNIQFDRLVIECTG-MADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (317)
T ss_pred HHHHHHCCCCCCCEEEEECCC-CCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCEEEEE
T ss_conf 998664357775479996257-7883999999861256565320365599986655576653034667666318689974
Q ss_pred ECCCCCCCCHHHHHHHH--HCCCHHHEECCC
Q ss_conf 11576633036777888--478730261586
Q gi|254780711|r 249 RMDGDGRGGAALSMRTV--TGKPIKAIGTGE 277 (461)
Q Consensus 249 KlD~~akgG~als~~~~--~~~PI~fig~GE 277 (461)
|.|--+.--.+...... ...||.....|+
T Consensus 159 K~Dlv~~~~~l~~~l~~lNp~A~i~~~~~~~ 189 (317)
T PRK11537 159 KTDVAGEAEKLRERLARINARAPVYTVTHGD 189 (317)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 2002365999999999868998489964687
No 70
>KOG1805 consensus
Probab=97.99 E-value=5.7e-05 Score=58.11 Aligned_cols=168 Identities=17% Similarity=0.176 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 878989999999999999---98524696999999999999983031112699899999999999998718774210002
Q gi|254780711|r 20 GSLSETDISNTLREIRRT---FLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLN 96 (461)
Q Consensus 20 ~~l~e~~i~~~l~ei~~a---LLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~ 96 (461)
-.||++++.......+.. |+..|+.....++++-..+.-..-......+.|+ +.++ .+..+=.+....+...
T Consensus 607 ~ridK~d~~ss~s~~r~nL~~l~~~~~~~~~lRdlivd~~pP~f~~~~~~~~~p~--~~~~---~~~~LN~dQr~A~~k~ 681 (1100)
T KOG1805 607 FRIDKEDIMSSASTKRGNLMSLLLNDEGGKILRDLIVDLKPPKFVDALSKVLIPK--IKKI---ILLRLNNDQRQALLKA 681 (1100)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCH--HHHH---HHHHCCHHHHHHHHHH
T ss_conf 3404776541666643149887257743014887765058952421565446702--5678---8753188999999998
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH-
Q ss_conf 5884189962344333468899999999861489507820542210047799998510347422233210368999999-
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA- 175 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a- 175 (461)
=.--.--|..|..|+|||||++-|-+-+.. .|++|++.+ -| --|+|-+-.=-+..++++.....++-.-.-+++.
T Consensus 682 L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-~gkkVLLts-yT--hsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~ 757 (1100)
T KOG1805 682 LAAEDYALILGMPGTGKTTTISLLIKILVA-LGKKVLLTS-YT--HSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFT 757 (1100)
T ss_pred HHCCCHHEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEE-HH--HHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH
T ss_conf 730332203269989812259999999997-388189985-05--67889999987506711034487222446899871
Q ss_pred ------------HH-------------------HHHHCCCCEEEEECCCCCC
Q ss_conf ------------99-------------------9974158869983344222
Q gi|254780711|r 176 ------------TQ-------------------SARDGGYDAVILDTAGRNH 196 (461)
Q Consensus 176 ------------~~-------------------~a~~~~~D~iiiDTaGR~~ 196 (461)
++ -|..+.+|++|||-|+-.+
T Consensus 758 ~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805 758 LTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCEEEECCCCCCC
T ss_conf 2344545339999997289767999715788655521426789986511114
No 71
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.97 E-value=0.00069 Score=49.87 Aligned_cols=173 Identities=21% Similarity=0.292 Sum_probs=96.8
Q ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCHHHH----HHHHH
Q ss_conf 8996234-433346889999999986148950782054221004779-99985103474222332103689----99999
Q gi|254780711|r 102 VIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ-LRYLGEQIQVDTLEVIPEQSPEK----IAIRA 175 (461)
Q Consensus 102 vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ-L~~~a~~~~v~~~~~~~~~dp~~----i~~~a 175 (461)
.||+.|. -|+||||-++=|+++|++ +|.+|.---|- |--+|+ +..+ ..+.|.+. -||.- .++..
T Consensus 5 ~lmI~gt~S~~GKT~vt~gL~r~l~~-rG~~VapFK~G---PDyIdp~~~~~--a~g~~~~n----LD~~l~~~~~v~~~ 74 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRR-RGLRVQPFKVG---PDYIDPAFHAA--ATGRPSRN----LDSWMMGEDLVRAL 74 (451)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCC---CCCCCHHHHHH--HHCCCCCC----CCHHHCCHHHHHHH
T ss_conf 79998689999789999999999996-87945753578---57629899999--97897535----88344899999999
Q ss_pred HHHHHHCCCCEEEEECC-----CCCCCHH-HHHHHHHHHHHHCCCCCCCCCCCHH-CCHHHHHHHHHH---HHHCCCCCE
Q ss_conf 99997415886998334-----4222112-4689999998513851100031011-122568888988---763584407
Q gi|254780711|r 176 TQSARDGGYDAVILDTA-----GRNHIND-SLMQEISEIKSLTNPHEILLVADAL-TGQDAVHLARNF---DKIVDLTGI 245 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTa-----GR~~~d~-~lm~El~~i~~~~~p~e~~lV~da~-~Gq~a~~~a~~F---~~~~~i~gi 245 (461)
... ..+.+|++||.-+ |....+. .--.|+. +.++ .-++||+|+. +++....++..| ...+.|-|+
T Consensus 75 ~~~-~~~~~D~~viEG~mGlyDG~~~~~~~gS~aeiA---~~l~-~PViLViD~~~~~~s~aa~v~G~~~~~~~~~I~Gv 149 (451)
T PRK01077 75 FAR-AAGGADIAVIEGVMGLFDGAGGDPDKGSTADIA---RLLG-APVVLVVDASGMAQSAAALVLGFARFDPDLNIAGV 149 (451)
T ss_pred HHH-HCCCCCEEEEEECHHCCCCCCCCCCCCCHHHHH---HHHC-CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 997-546688899850101134545677777789999---8709-98899984662089999999999975977877489
Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 7641157663303677788847873026158672321001368899877358
Q gi|254780711|r 246 ILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM 297 (461)
Q Consensus 246 IlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm 297 (461)
|+.|+-|+...--.=.+...+++| .+|+=-+.+++. +-+|=||.
T Consensus 150 IlNk~~g~~h~~ll~~~ie~~gvp--vlG~lP~~~~l~------lpeRHLGL 193 (451)
T PRK01077 150 ILNRVGSERHYQLLREALEELGLP--VLGALPRDAALA------LPERHLGL 193 (451)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCC--EEEEECCCCCCC------CCCCCCCC
T ss_conf 962478766899999999863995--798615763345------64212577
No 72
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.94 E-value=0.00013 Score=55.31 Aligned_cols=143 Identities=15% Similarity=0.207 Sum_probs=86.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-------CCCHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233-------21036899999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-------PEQSPEKIAIR 174 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-------~~~dp~~i~~~ 174 (461)
|.++.|-=||||||.+-++.. ...+++++++--|.-..+ +|.-- -...+.+++... ...|-.....+
T Consensus 2 v~iitGFLGaGKTTll~~lL~---~~~~~~~avIvNEfG~~~-ID~~l--l~~~~~~v~el~~GCiCCs~~~dl~~~l~~ 75 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILT---EQHGRKIAVIENEFGEVG-IDNQL--VVDTDEEIIEMNNGCICCTVRGDLIRALLD 75 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHH---CCCCCCEEEEEECCCCCC-CCHHH--HHCCCCEEEEECCCEEEEECCCHHHHHHHH
T ss_conf 089984888999999999984---788997799970765546-31667--637882499933871465225158999999
Q ss_pred HHHHHH--HCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf 999997--4158869983344222112468999---999851385110003101112256888898876358-4407764
Q gi|254780711|r 175 ATQSAR--DGGYDAVILDTAGRNHINDSLMQEI---SEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD-LTGIILT 248 (461)
Q Consensus 175 a~~~a~--~~~~D~iiiDTaGR~~~d~~lm~El---~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~-i~giIlT 248 (461)
.++... ...+|.|+|-|+|=-+-. ++++.+ ..+......+-++-|+||....+..+....+.+.+. -+-++++
T Consensus 76 l~~~~~~~~~~~d~iiIE~SGla~P~-~i~~~~~~~~~l~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD~ivln 154 (158)
T cd03112 76 LLERLDAGKIAFDRIVIETTGLADPG-PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLN 154 (158)
T ss_pred HHHHHHCCCCCCCEEEEECCCCCCCH-HHHHHHHCCHHHHCEEECCCEEEEECHHHHHHHHHCCHHHHHHHHHCCEEEEE
T ss_conf 99976515788788999636878828-99998860714321074387699981898776432446999999968999996
Q ss_pred ECC
Q ss_conf 115
Q gi|254780711|r 249 RMD 251 (461)
Q Consensus 249 KlD 251 (461)
|.|
T Consensus 155 K~D 157 (158)
T cd03112 155 KTD 157 (158)
T ss_pred CCC
T ss_conf 677
No 73
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.93 E-value=1.8e-05 Score=62.04 Aligned_cols=47 Identities=36% Similarity=0.536 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 43334688999999998614895078205422100477999985103474222332103689999999999741588699
Q gi|254780711|r 109 QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVI 188 (461)
Q Consensus 109 ~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~ii 188 (461)
=|+||||++.-||.++.. .|++|+++-+|.+ ||+||
T Consensus 9 GGvGKtt~~~~la~~~a~-~g~~vl~iD~DpQ-------------------------------------------yD~ii 44 (104)
T cd02042 9 GGVGKTTTAVNLAAALAR-RGKRVLLIDLDPQ-------------------------------------------YDYII 44 (104)
T ss_pred CCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC-------------------------------------------CCEEE
T ss_conf 987689999999999997-7992999977988-------------------------------------------88899
Q ss_pred EECCCCCCCHH
Q ss_conf 83344222112
Q gi|254780711|r 189 LDTAGRNHIND 199 (461)
Q Consensus 189 iDTaGR~~~d~ 199 (461)
|||+++.....
T Consensus 45 IDtpp~~~~~~ 55 (104)
T cd02042 45 IDTPPSLGLLT 55 (104)
T ss_pred EECCCCCCHHH
T ss_conf 97949998999
No 74
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.92 E-value=2.9e-05 Score=60.42 Aligned_cols=69 Identities=29% Similarity=0.389 Sum_probs=50.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
+|.+.|..|+||||+++-||.++.+ .|++|+++-
T Consensus 1 ~i~~~~~kGvGKTT~a~~La~~la~-~g~~Vl~vD--------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK-RGKRVLLID--------------------------------------------- 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEC---------------------------------------------
T ss_conf 9898589977689999999999998-899699986---------------------------------------------
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 1588699833442221124689999998513851100031011
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL 224 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~ 224 (461)
|+|+|||++.......+ .......++.++.++...
T Consensus 35 ---d~iiiD~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~ 69 (99)
T cd01983 35 ---DYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPE 69 (99)
T ss_pred ---CCEEECCCCCCCHHHHH-----HHHHHHHCCEEEEECCCC
T ss_conf ---71788589988846899-----998787589589965984
No 75
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.90 E-value=0.00013 Score=55.39 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=84.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CCCCCC-----CHHHHH
Q ss_conf 8996234433346889999999986148950782054221004779999851034742-----223321-----036899
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LEVIPE-----QSPEKI 171 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~~~~~-----~dp~~i 171 (461)
+++++|++||||||-+--.- + ......--++++--.|.||..=-+-.|+..|-++ |....+ ..-+.+
T Consensus 22 ~~vl~a~tGsGKtTqvP~~l--l-~~~~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e~~~s~~Tri~~ 98 (812)
T PRK11664 22 QVLLKAPTGAGKSTWLPLQL--L-QQGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEV 98 (812)
T ss_pred EEEEEECCCCCHHHHHHHHH--H-HCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEE
T ss_conf 79999089999899999999--9-64688993899388399999999999997299999867578256778899857999
Q ss_pred HHHHH------HHHHHCCCCEEEEECCCCCCCHHHH-HHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC
Q ss_conf 99999------9997415886998334422211246-8999999851385110003101112256888898876358
Q gi|254780711|r 172 AIRAT------QSARDGGYDAVILDTAGRNHINDSL-MQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD 241 (461)
Q Consensus 172 ~~~a~------~~a~~~~~D~iiiDTaGR~~~d~~l-m~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~ 241 (461)
+-+|+ ..-...+|++||+|-+---+.+.++ +.=+.++.....||-.++|++||.- +..|.+.++
T Consensus 99 ~T~GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvvMSATld------~~~~~~~~~ 169 (812)
T PRK11664 99 VTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD------NDRLQQLLP 169 (812)
T ss_pred ECHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC------HHHHHHHCC
T ss_conf 75589999972497767788899957546875189999999999986189828999847888------488997589
No 76
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=97.90 E-value=0.00012 Score=55.70 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=40.5
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECC-CCC
Q ss_conf 99998718774210002588418996234-43334688999999998614895078205-422
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASL-DVH 140 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~-Dt~ 140 (461)
+||-+.|+.... .+....|.||-++-. =|||||||++-||+++.. .|++|++|-| |-.
T Consensus 88 ~~lR~~l~~~~~--rp~~~~~~VIAVaN~KGGVGKTTTavnLA~~LAl-~G~RVL~ID~lDPQ 147 (387)
T PHA02519 88 SHMRDHFGNPNQ--RPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLAL-QGHRVLLIEGNDPQ 147 (387)
T ss_pred HHHHHHHCCCCC--CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCC
T ss_conf 999998645667--9898875289986168877699999999999997-69968999598852
No 77
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.88 E-value=0.00027 Score=53.02 Aligned_cols=114 Identities=19% Similarity=0.211 Sum_probs=71.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
|+++|+.||||||.+..|+.++.. .+..|.+++.|..|-.. +++....++..-.....+++.+...
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~~-~~~~~i~~~~d~~~~~~-------------~~~~~~~Ek~~r~~~~~~v~~~l~~ 67 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLSE-KNIDNIILGTDLIRESF-------------PVWKEKYEEFIRDSTLYLIKTALKN 67 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-HCCCEEEECCCCCHHHH-------------HHCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 789678999899999999999998-29965996552002120-------------0033677999899999999998433
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf 588699833442221124689999998513851100031011122568888988763
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI 239 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~ 239 (461)
-++||+|--- +=..+--||-.+.+...-....+-+++ ..+++..++..
T Consensus 68 -~~~vI~D~~n---YiKg~RYEL~clAk~~~t~~c~I~~~~-----p~e~c~~~N~~ 115 (249)
T TIGR03574 68 -KYSVIVDDTN---YYNSKRRDLINIAKEYNKNYIIIYLKA-----PLDTLLRRNIE 115 (249)
T ss_pred -CCEEEECCCC---HHHHHHHHHHHHHHHCCCCEEEEEECC-----CHHHHHHHHHH
T ss_conf -7669972732---788999999999998499869999739-----99999998760
No 78
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=97.88 E-value=0.00011 Score=55.88 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=65.1
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 25884189962344333468899999999861489507820542210047799998510347422233210368999999
Q gi|254780711|r 96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA 175 (461)
Q Consensus 96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a 175 (461)
...+|..|++.|.+||||||.+..+...+. +..+.+|.+|.||.--- +...+... +-...+.....+...++...
T Consensus 8 ~~~~Pkai~laG~pGAGKS~~~~~~~~~~~---~~~~v~In~D~~r~~~P-~y~~l~~~-~~~~~~~~~~~~a~~~~~~~ 82 (191)
T pfam06414 8 PQERPVAVLLGGQPGAGKTELARALLEELG---GGNVVRIDPDELRTYHP-DYDELQKA-DPKDASELTQPDASRWVEKL 82 (191)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCC---CCCCEEECCHHHHHHHH-HHHHHHHC-CHHHHHHHHHHHHHHHHHHH
T ss_conf 876987999957998888999999987537---89938971358788777-47865540-76778999899999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHH-HHHHHHHH
Q ss_conf 999974158869983344222112-46899999
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHIND-SLMQEISE 207 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~-~lm~El~~ 207 (461)
++++.+++++ +||||.+|....- .+++.+++
T Consensus 83 ~~~a~~~r~n-~iiegT~~~~~~~~~~~~~lk~ 114 (191)
T pfam06414 83 IDYAIERGYN-IILEGTLRSPDVARKLARKLKA 114 (191)
T ss_pred HHHHHHCCCC-EEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999975999-8985777897999999999997
No 79
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.87 E-value=0.00054 Score=50.68 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=65.4
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH------
Q ss_conf 99998718774210002588418996234433346889999999986148950782054221004779999851------
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE------ 153 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~------ 153 (461)
++|-++|++.- .+.+++++.|..|+||||.+..+++...+ +|.++++++++--+..-+.|.+.++=
T Consensus 19 ~~lD~~l~GG~-------p~g~~~li~G~~G~GKt~~~~~f~~~~~~-~g~~~~~~~~ee~~~~~~~~~~~~g~dl~~~~ 90 (241)
T PRK06067 19 EEIDRKLGGGI-------PFGSLILIEGENDTGKSVLSQQFVWGALN-QGKRGLAITTENTSKSYLKQMESLKLDISDFF 90 (241)
T ss_pred HHHHHHCCCCC-------CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCHHHHHHHHHHCCCCHHHHH
T ss_conf 55786506997-------79908999807998879999999999986-79829999942899999999998399859998
Q ss_pred ---CCCC-CCCCCC---CCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf ---0347-422233---210368999999999974158869983344
Q gi|254780711|r 154 ---QIQV-DTLEVI---PEQSPEKIAIRATQSARDGGYDAVILDTAG 193 (461)
Q Consensus 154 ---~~~v-~~~~~~---~~~dp~~i~~~a~~~a~~~~~D~iiiDTaG 193 (461)
.+.+ |+.... ...++..+...-++..+..+.++|+||+--
T Consensus 91 ~~G~L~i~~~~~~~~~~~~~~~~~ll~~l~~~v~~~~~~~vVIDSls 137 (241)
T PRK06067 91 IWGYLRIFPLNTEGFEWNSELAEKLLDLIIEFIKRRREEVIIIDSLT 137 (241)
T ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHH
T ss_conf 66970578324111342155689999999999997199899992801
No 80
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.86 E-value=0.00013 Score=55.53 Aligned_cols=108 Identities=22% Similarity=0.302 Sum_probs=79.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-CC-----CCCCCCEEEEEEC
Q ss_conf 99999852469699999999999998303111269989999999999999871877421-00-----0258841899623
Q gi|254780711|r 34 IRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIE-LD-----LNAPSPLVIMLVG 107 (461)
Q Consensus 34 i~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~-l~-----~~~~~p~vIllvG 107 (461)
+.++|..+.+.+..+-++...+++.+..+.. ..++. +.+.+.|++.|.+-=+++... +. .....|.+||+.|
T Consensus 22 l~rslt~~gi~~~~A~~ia~ei~~~L~~~~~-~~i~~-~el~~~v~~~l~~~~~~~~a~rY~~~r~~r~~~~pliILigG 99 (306)
T PRK04220 22 LARSLTAAGMKPDLAYEIASEIEEELKKEGI-TKITK-EELRRRVYYKLIEKDYEEIAEKYLLWRRIRKSKEPIIILIGG 99 (306)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-EEECH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 9999998089888999999999999986577-16359-999999999999844099999999999985369987999858
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 443334688999999998614895078205422100477999985
Q gi|254780711|r 108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLG 152 (461)
Q Consensus 108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a 152 (461)
..|+||+|-++.||.++-- . -++++|+-| |=|+.+-
T Consensus 100 tsGvGKSTlA~~LA~rLgI---~--~visTD~IR----EVmR~~~ 135 (306)
T PRK04220 100 ASGVGTSTIAFELASRLGI---R--SVIGTDSIR----EVMRKII 135 (306)
T ss_pred CCCCCHHHHHHHHHHHHCC---C--EEECCHHHH----HHHHHCC
T ss_conf 9988789999999997098---8--342221699----9998524
No 81
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.84 E-value=0.00074 Score=49.64 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=63.2
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH-HHHHCC--C
Q ss_conf 9999871877421000258841899623443334688999999998614895078205422100477999-985103--4
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR-YLGEQI--Q 156 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~-~~a~~~--~ 156 (461)
.||-++||+.-. +-.++++.|..|+||||-|--+|..+.+ .+.+|+.+++--.-+.-+.|+. .-.+.+ +
T Consensus 6 ~~lD~vLgGGi~-------~G~it~i~G~pG~GKStl~lq~a~~~~~-~g~~v~YidtE~~~~er~~qi~~~~~~~~~~~ 77 (218)
T cd01394 6 KGLDELLGGGVE-------RGTVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEGLSSERFRQIAGDRPERAASS 77 (218)
T ss_pred HHHHHHHCCCCC-------CCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 789998569987-------8879999899998499999999999863-69869999665567699999987536665305
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 742223321036899999999997415886998334422
Q gi|254780711|r 157 VDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN 195 (461)
Q Consensus 157 v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~ 195 (461)
+.++....-.+-..+. +-++....++.++|+||..--+
T Consensus 78 i~v~~~~~~~~~~~~i-~~~~~~~~~~~~lvViDSi~tl 115 (218)
T cd01394 78 IIVFEPMDFNEQGRAI-QETETFADEKVDLVVVDSATAL 115 (218)
T ss_pred CEEECCCCHHHHHHHH-HHHHHHHHCCCCEEEEECCHHH
T ss_conf 1462678768899999-9999764147729999140455
No 82
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.82 E-value=0.00046 Score=51.19 Aligned_cols=123 Identities=22% Similarity=0.340 Sum_probs=81.0
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 23443334688999999998614895078205422100477999985103474222332103689999999999741588
Q gi|254780711|r 106 VGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYD 185 (461)
Q Consensus 106 vGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D 185 (461)
-|=-|+||||.++-||..+.+ .|++|+++-+|.- .. +-+||
T Consensus 6 sgKgGvGkt~~~~nLa~~la~-~G~~vll~D~D~g----------------~a----------------------n~~~D 46 (139)
T cd02038 6 SGKGGVGKTNISANLALALAK-LGKRVLLLDADLG----------------LA----------------------NLDYD 46 (139)
T ss_pred CCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC----------------CC----------------------CCCCC
T ss_conf 499998399999999999997-8996999989899----------------96----------------------57999
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCCHHHHHHHHHHHHHCCCC--CEEEEECCCCCCCCHHHH
Q ss_conf 69983344222112468999999851385110003101--11225688889887635844--077641157663303677
Q gi|254780711|r 186 AVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LTGQDAVHLARNFDKIVDLT--GIILTRMDGDGRGGAALS 261 (461)
Q Consensus 186 ~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~Gq~a~~~a~~F~~~~~i~--giIlTKlD~~akgG~als 261 (461)
+|||||+...+.+. ..+... .|++++|.-. +.=.||....+..++..+.. .+|+.+..+...+=....
T Consensus 47 ~viiD~~aG~~~~~------~~~~~~--ad~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~v~s~~ea~~~~~ 118 (139)
T cd02038 47 YIIIDTGAGISDNV------LDFFLA--ADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVFK 118 (139)
T ss_pred EEEEECCCCCCHHH------HHHHHH--CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 99994899987789------999995--8957999589706799999999999996399975999956899999999999
Q ss_pred -----HHHHHCCCHHHEEC
Q ss_conf -----78884787302615
Q gi|254780711|r 262 -----MRTVTGKPIKAIGT 275 (461)
Q Consensus 262 -----~~~~~~~PI~fig~ 275 (461)
+....++++.|+|.
T Consensus 119 ~l~~v~~kfL~v~l~~lG~ 137 (139)
T cd02038 119 RLSNVSNRFLGLSLDYLGF 137 (139)
T ss_pred HHHHHHHHHCCCCCCCCEE
T ss_conf 9999999980998310714
No 83
>PRK08116 hypothetical protein; Validated
Probab=97.82 E-value=0.0003 Score=52.68 Aligned_cols=137 Identities=20% Similarity=0.261 Sum_probs=81.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
...=++|.|..|+|||-.++=+|+.+.. +|.+|+++++-.+ +++|+.- |......+-.+ -++.
T Consensus 107 ~~~GLll~G~~GtGKThLa~aIa~~l~~-~g~~V~~~~~~~l----l~~lk~~--------~~~~~~~~~~e----~l~~ 169 (262)
T PRK08116 107 ESVGLLLWGSPGNGKTYLAAAIANELIE-KGVPVVFVNVPEL----LNRIKST--------YNSEGKEDENE----IIRA 169 (262)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEHHHH----HHHHHHH--------HHCCCCHHHHH----HHHH
T ss_conf 6861899898999899999999999998-7993999889999----9999999--------86356101999----9998
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf 97415886998334422211246899999985138511000310111225688889887635844077641157663303
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGA 258 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~ 258 (461)
. ..+|++|||--|--...++-.+.+-.
T Consensus 170 l--~~~dLLIiDDlG~e~~t~w~~e~lf~--------------------------------------------------- 196 (262)
T PRK08116 170 L--DNADLLILDDLGAEKDTEWVREKLYN--------------------------------------------------- 196 (262)
T ss_pred H--HCCCEEEEEHHCCCCCCHHHHHHHHH---------------------------------------------------
T ss_conf 6--12998998322145698789999999---------------------------------------------------
Q ss_pred HHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf 677788847873026158672321001368899877358627889998
Q gi|254780711|r 259 ALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEK 306 (461)
Q Consensus 259 als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~ 306 (461)
+++-++..++|+.|.+ --..++|+....+|++|||+.|.-++.+--.
T Consensus 197 IIn~Ry~~~kptIiTT-Nl~~~eL~~~~~~Ri~sRl~e~~~~v~~~G~ 243 (262)
T PRK08116 197 IIDSRYRKGLPTIFTT-NLSLEELKNQYGKRTYSRILEMCTPVKNEGK 243 (262)
T ss_pred HHHHHHHCCCCEEEEC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 9999997699989987-9999999998637999999867789985177
No 84
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=97.81 E-value=0.00013 Score=55.48 Aligned_cols=123 Identities=23% Similarity=0.244 Sum_probs=62.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054-22100477999985103474222332103689999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD-VHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D-t~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
..|.++|-.++||||-+-.|-...... .. ....+.. +..--..||-+ |+..-.... .+
T Consensus 4 rnVaivG~~n~GKSTL~n~Ll~~~~~i-~~-~~~~~~~~~~d~~~~E~~r------giTi~~~~~-------------~~ 62 (185)
T pfam00009 4 RNIGIIGHVDHGKTTLTDALLYVTGAI-DK-RGEVKQEGELDRLKEERER------GITIKIAAV-------------SF 62 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC-CC-CCCCCCCCCCCCCHHHHHC------CEEEEEEEE-------------EE
T ss_conf 789999389944999999997154876-54-6431003333655888857------826987699-------------99
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHH-----HHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 74158869983344222112468999999851385110003101112256-----888898876358440776411576
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDA-----VHLARNFDKIVDLTGIILTRMDGD 253 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a-----~~~a~~F~~~~~i~giIlTKlD~~ 253 (461)
..+++.+.||||+| |. +.+.++..- ....|-++||+||..|-.. ...++.. .++ -=++++|+|--
T Consensus 63 ~~~~~~i~~iDtPG--h~--~f~~~~~~~--l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~--~~p-~iv~vNKiD~v 132 (185)
T pfam00009 63 ETKKRHINIIDTPG--HV--DFTKEMIRG--AAQADGAILVVDAVEGVMPQTREHLLLAKQL--GVP-IIVFINKMDRV 132 (185)
T ss_pred EECCCEEEEEECCC--CC--CHHHHHHHH--HHHCCCCEEEEECCCCCCCCCHHHHHHHHHH--CCC-EEEEEECCCCC
T ss_conf 60893689998998--71--439999999--8646564299986768532309999999982--898-79999773277
No 85
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.81 E-value=0.00053 Score=50.75 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=73.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 96234433346889999999986148950782054221004779999851034742-22332103689999999999741
Q gi|254780711|r 104 MLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-LEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 104 llvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
..-|--|+||||.++-||..+.+ .|++|+++-+|.+-|- +|. |... -...+.++-+......
T Consensus 4 v~s~kggvgkst~~~~la~~l~~-~g~~v~~~d~di~gps-------------ip~~~rGp---~~~~~i~q~l~~~~w~ 66 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAK-LGYKVGLLDADIYGPS-------------IPKMWRGP---MKMGAIKQFLTDVDWG 66 (169)
T ss_pred EECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCCCC-------------CCEEEECH---HHHHHHHHHHHHCCCC
T ss_conf 97499988199999999999998-7997899971379997-------------55012047---3899999999852546
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCCHHHHHHHHHHHHH-CCCCCEEEEE
Q ss_conf 58869983344222112468999999851385110003101--1122568888988763-5844077641
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LTGQDAVHLARNFDKI-VDLTGIILTR 249 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~Gq~a~~~a~~F~~~-~~i~giIlTK 249 (461)
.+|++||||.--.. | |--.+...+..++.++|--- ..=.|+....+-|++. +++-|+|.-.
T Consensus 67 ~lDyLIID~PPGtg-D-----~~lt~~~~~~~d~~IvVTTP~~~s~~Da~r~i~~~~~~~i~i~GvVeNM 130 (169)
T cd02037 67 ELDYLVIDMPPGTG-D-----EHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENM 130 (169)
T ss_pred CCCEEEEECCCCCC-H-----HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 67889996899987-0-----7787987505674799946958899999999999997599707999879
No 86
>PRK04328 hypothetical protein; Provisional
Probab=97.80 E-value=0.0018 Score=46.61 Aligned_cols=66 Identities=23% Similarity=0.255 Sum_probs=48.4
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 999871877421000258841899623443334688999999998614895078205422100477999985103474
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD 158 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~ 158 (461)
.|-++|++.- .+.+++++.|..|+||||.+...++.-.+ +|.+++.++.+-- .+|+...+...|.+
T Consensus 12 gLD~lL~GGl-------p~gs~~Lv~G~pGtGKT~la~qFl~~g~~-~GE~~lyis~eE~----~~~l~~~~~~~G~d 77 (250)
T PRK04328 12 GMDEILYGGI-------PERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEH----PVQVRRNMAQFGWD 77 (250)
T ss_pred HHHHHCCCCC-------CCCEEEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECC----HHHHHHHHHHCCCC
T ss_conf 6787515998-------79969999828999989999999999987-6997799997279----99999999980998
No 87
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.80 E-value=0.00076 Score=49.54 Aligned_cols=170 Identities=19% Similarity=0.271 Sum_probs=102.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH----------------HHHHHC-CC---CCCCC
Q ss_conf 89962344333468899999999861489507820542210047799----------------998510-34---74222
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL----------------RYLGEQ-IQ---VDTLE 161 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL----------------~~~a~~-~~---v~~~~ 161 (461)
+|.++|=-|+||||-+|=||..+..+++++|++|-||- -++=.+|| +..... -+ .++|.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-CCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 69996599765899999999999864895499994899-99907762999987553008999999861478999553001
Q ss_pred CC-------------------------C--CC---HHH-HHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHHHHHHH
Q ss_conf 33-------------------------2--10---368-9999999999741588699833-442221124689999998
Q gi|254780711|r 162 VI-------------------------P--EQ---SPE-KIAIRATQSARDGGYDAVILDT-AGRNHINDSLMQEISEIK 209 (461)
Q Consensus 162 ~~-------------------------~--~~---dp~-~i~~~a~~~a~~~~~D~iiiDT-aGR~~~d~~lm~El~~i~ 209 (461)
.. . ++ =|+ ..+++-+++...+.||+||||| || ++.+.
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAG-----------iEHfg 149 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAG-----------IEHFG 149 (255)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC-----------HHHHC
T ss_conf 3754335169885006880079952556799743162789999999997516674899963345-----------66656
Q ss_pred HHC--CCCCCCCCCCHHCCHHHHHHHHHHHHH---CCCC--CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC
Q ss_conf 513--851100031011122568888988763---5844--077641157663303677788847873026158672321
Q gi|254780711|r 210 SLT--NPHEILLVADALTGQDAVHLARNFDKI---VDLT--GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL 282 (461)
Q Consensus 210 ~~~--~p~e~~lV~da~~Gq~a~~~a~~F~~~---~~i~--giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl 282 (461)
+-+ .-|-++.|+|... .++..|+.+.+- +++- .+|+.|.|.. ...+.. .....-.-++| .
T Consensus 150 Rg~~~~vD~vivVvDpS~--~sl~taeri~~L~~elg~k~i~~V~NKv~e~---e~~~~~-~~~~~~~~vlg-------~ 216 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSY--KSLRTAERIKELAEELGIKRIFVVLNKVDEE---EELLRE-LAEELGLEVLG-------V 216 (255)
T ss_pred CCCCCCCCEEEEEECCCH--HHHHHHHHHHHHHHHHCCCEEEEEEEECCCH---HHHHHH-HHHCCCCEEEE-------E
T ss_conf 563257877999957877--8888899999999871875499999503411---577776-53227974899-------7
Q ss_pred CCCCHHHHHHHHHC
Q ss_conf 00136889987735
Q gi|254780711|r 283 ENFFPDRIANRILG 296 (461)
Q Consensus 283 e~F~p~~~~~riLG 296 (461)
-|+||+-+-.-+-|
T Consensus 217 iP~d~~v~~~dl~G 230 (255)
T COG3640 217 IPYDPEVVEADLKG 230 (255)
T ss_pred CCCCHHHHHCCCCC
T ss_conf 16987887422568
No 88
>PRK11670 putative ATPase; Provisional
Probab=97.78 E-value=0.002 Score=46.39 Aligned_cols=173 Identities=18% Similarity=0.216 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCC---------C------CCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 998999999999999987187742100---------0------25884189962-3443334688999999998614895
Q gi|254780711|r 68 IQPGQMVIKIVHDELVEVLGKESIELD---------L------NAPSPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKK 131 (461)
Q Consensus 68 ~~~~~~i~kiv~~eL~~lLg~~~~~l~---------~------~~~~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~k 131 (461)
....+.+.+-+.+.|..+-+-....+. . -++-.+||... |==|+||||+++-||.-|.+ .|+|
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vIAVaSGKGGVGKSTvavNLA~ALA~-~G~k 138 (369)
T PRK11670 60 NSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAA-EGAK 138 (369)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCC
T ss_conf 887999999999999857897458999974045645556678888868899998589988899999999999996-6993
Q ss_pred EEEECCCCCCCHHHHHHHHHH------H--------CCCCCCCCC---CCCCHHH----HHHHHHHHHHHH----CCCCE
Q ss_conf 078205422100477999985------1--------034742223---3210368----999999999974----15886
Q gi|254780711|r 132 ILMASLDVHRPAAQEQLRYLG------E--------QIQVDTLEV---IPEQSPE----KIAIRATQSARD----GGYDA 186 (461)
Q Consensus 132 V~lv~~Dt~R~aA~eQL~~~a------~--------~~~v~~~~~---~~~~dp~----~i~~~a~~~a~~----~~~D~ 186 (461)
|+++-+|.|=|..-.-|-.-. + ..++.+.+. ....+|. ..+..++..+.. ..+|+
T Consensus 139 VgllDADi~Gpsip~mlG~~~~~~~~~d~~~i~P~~~~gi~~~S~g~l~~~~~~~iwRgp~~~~al~q~l~~~~wg~lDy 218 (369)
T PRK11670 139 VGILDADIYGPSIPTMLGAENQRPTSPDGTHMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY 218 (369)
T ss_pred EEEEECCCCCCCCCHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 78982478887650230665456646889663760005812530220237664022213016799999877743378888
Q ss_pred EEEECC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCCHHHHHHHHHHHH-HCCCCCEEEE
Q ss_conf 998334-4222112468999999851385110003101--112256888898876-3584407764
Q gi|254780711|r 187 VILDTA-GRNHINDSLMQEISEIKSLTNPHEILLVADA--LTGQDAVHLARNFDK-IVDLTGIILT 248 (461)
Q Consensus 187 iiiDTa-GR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~Gq~a~~~a~~F~~-~~~i~giIlT 248 (461)
+|||++ |-. |.. -.+...+..+..++|.-- ..=.||.....-|++ .+++-|+|-.
T Consensus 219 LIID~PPGtg--Di~-----Ltl~q~v~~~gavvVTTPq~~Al~Da~k~i~m~~k~~vpilGiVeN 277 (369)
T PRK11670 219 LVLDMPPGTG--DIQ-----LTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVEN 277 (369)
T ss_pred EEEECCCCCC--HHH-----HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9983799875--277-----7887645766079962773769999999999998548885068863
No 89
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=97.78 E-value=0.00017 Score=54.46 Aligned_cols=146 Identities=26% Similarity=0.263 Sum_probs=77.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH------------HHHHHHHHHC------------CCC
Q ss_conf 8996234433346889999999986148950782054221004------------7799998510------------347
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA------------QEQLRYLGEQ------------IQV 157 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA------------~eQL~~~a~~------------~~v 157 (461)
-|.+.|==|+|||||++-||+-|.. .|+||++|-||-.-... .+-|+..... -++
T Consensus 3 ~iaiyGKGGVGKSTTt~NLaAALA~-~GkkVL~IgcDPk~dsT~~l~gg~~~~tvld~l~~~~~~~~~l~~v~~~g~~gv 81 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALST-MGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGDI 81 (273)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHEEECCCCCE
T ss_conf 7999799866588789999999997-799699989788442777885899888799999861856563666154288973
Q ss_pred CCCCCCC---C---CHHHHHH-HHHHHHH--HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--C
Q ss_conf 4222332---1---0368999-9999999--7415886998334422211246899999985138511000310111--2
Q gi|254780711|r 158 DTLEVIP---E---QSPEKIA-IRATQSA--RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--G 226 (461)
Q Consensus 158 ~~~~~~~---~---~dp~~i~-~~a~~~a--~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--G 226 (461)
.++.... + .....+. .+-++.. -...+|+||+|+.|-..-..--| -+ +.--.+|+++|..+-. =
T Consensus 82 ~cve~ggp~~g~gcagrgii~~~~lle~l~~~~~~~Dyvl~Dvlgdvvcggfa~-P~----~~~~A~evlIVts~E~~sl 156 (273)
T PRK13232 82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAM-PI----REGKAKEIYIVASGELMAI 156 (273)
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCC-CC----CCCCCCEEEEEECCCHHHH
T ss_conf 898689987676545304788888999708321479889994147332365314-42----0165768999807608889
Q ss_pred HHHHHH---HHHHHH-HCCCCCEEEEECCCC
Q ss_conf 256888---898876-358440776411576
Q gi|254780711|r 227 QDAVHL---ARNFDK-IVDLTGIILTRMDGD 253 (461)
Q Consensus 227 q~a~~~---a~~F~~-~~~i~giIlTKlD~~ 253 (461)
+.|.++ .+.|.+ ...+.|+|.+..+.+
T Consensus 157 yaannI~k~i~~~~~~~~rl~GiI~n~r~~~ 187 (273)
T PRK13232 157 YAANNICKGLAKFAKGGARLGGIICNSRNVD 187 (273)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 9999999999999621885014885055776
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.0067 Score=42.33 Aligned_cols=220 Identities=20% Similarity=0.250 Sum_probs=114.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCCHHHH
Q ss_conf 884189962344333468899999999861--48-950782054221004779999851034742223----32103689
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTL--KK-KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV----IPEQSPEK 170 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~--~~-~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~ 170 (461)
.-++-+||.|+.|+|||||+-=||.-+--. .+ ..+-.--|.. -+.-+...+--.++|+.. ..+-|-+.
T Consensus 43 ~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~-----c~~c~~i~~~~~~d~~e~daas~~~v~~~r 117 (600)
T PRK09111 43 RIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGV-----GEHCQAIMEGRHVDVIEMDAASHTGVDDIR 117 (600)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf 842047645789878999999999996698876668998898998-----865898866899875885155457888999
Q ss_pred HHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HH----HHHHHHHHH-------
Q ss_conf 9999999997-4158869983344222112468999999851385110003101112-25----688889887-------
Q gi|254780711|r 171 IAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QD----AVHLARNFD------- 237 (461)
Q Consensus 171 i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~----a~~~a~~F~------- 237 (461)
-..+.+.|+- ...|-|.|||-.-.+.... +.-|-+..+.- |.++.|++ |||- +. .+.-.+.|+
T Consensus 118 ~~~~~~~~~p~~~~~kv~iidevhmls~~a--fnallktleep-p~~~~fi~-att~~~k~p~ti~src~~f~~~~~~~~ 193 (600)
T PRK09111 118 EIIESVRYRPVSARYKVYIIDEVHMLSTAA--FNALLKTLEEP-PPHVKFIF-ATTEIRKVPVTVLSRCQRFDLRRIEAE 193 (600)
T ss_pred HHHHHHCCCCCCCCEEEEEEECCCCCCHHH--HHHHHHHHHCC-CCCEEEEE-ECCCHHHCCHHHHHHHHEECCCCCCHH
T ss_conf 999860538877754699960011057999--99999876259-86549999-628534375899854412010579999
Q ss_pred ------------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHH
Q ss_conf ------------635844----0776411576633036777888478730261586723210013688998773586278
Q gi|254780711|r 238 ------------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVV 301 (461)
Q Consensus 238 ------------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~ 301 (461)
+.+.++ .+|...-+|+.| -|||+-... |.| |.| +++ ..-+..+||+-|--
T Consensus 194 ~~~~~l~~i~~~e~~~~~~~al~~ia~~a~GS~R--DaLSlLDQa---i~~-~~~-~i~-------~~~v~~mLGl~d~~ 259 (600)
T PRK09111 194 VLAAHLARIAEKEGVEVEPDALALIARAAEGSVR--DGLSLLDQA---IAH-GAG-EVT-------AEQVRDMLGLADRA 259 (600)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC--HHHHHHHHH---HHC-CCC-CCC-------HHHHHHHHCCCCHH
T ss_conf 9999999999860768667799999997489842--189999999---972-798-756-------99999986887677
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCCCCH----HHHHHHHHHH
Q ss_conf 89998742112678--998886531046379----9999999998
Q gi|254780711|r 302 SLVEKAARNLNEKQ--AALTAKKIAKGKFDL----EDLAEQFRQT 340 (461)
Q Consensus 302 ~l~e~~~~~~d~~~--~~~l~~k~~~g~F~l----~Df~~Ql~~i 340 (461)
.+++-.+..++.+. +-...+++...-.+. +||++-+..+
T Consensus 260 ~i~~Ll~~i~~Gd~~~aL~~~~~l~~~G~Dp~~iL~dLLeilh~i 304 (600)
T PRK09111 260 RVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLRDLAEFVHLV 304 (600)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 899999999855868899999999985989999999999999999
No 91
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.77 E-value=0.0004 Score=51.72 Aligned_cols=148 Identities=18% Similarity=0.257 Sum_probs=78.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ 177 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~ 177 (461)
+-| +|.+||..-+||+|-.-+|+. .++.+ + | .|+-. -||.. +.+.
T Consensus 40 g~p-~VaivG~PNvGKSTLlN~L~g-------~~~~v-~-~------------------~~~tT----~d~~~---~~i~ 84 (204)
T cd01878 40 GIP-TVALVGYTNAGKSTLFNALTG-------ADVYA-E-D------------------QLFAT----LDPTT---RRLR 84 (204)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHC-------CCCEE-E-C------------------CCCCC----CCCEE---EEEE
T ss_conf 998-799988999989999999948-------99634-1-5------------------67764----57636---6899
Q ss_pred HHHHCCCCEEEEECCC-CCCCHHHHHHHHHH-HHHHCCCCCCCCCCCHHCC--HHHHHHHHHHHHHCCCCC----EEEEE
Q ss_conf 9974158869983344-22211246899999-9851385110003101112--256888898876358440----77641
Q gi|254780711|r 178 SARDGGYDAVILDTAG-RNHINDSLMQEISE-IKSLTNPHEILLVADALTG--QDAVHLARNFDKIVDLTG----IILTR 249 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaG-R~~~d~~lm~El~~-i~~~~~p~e~~lV~da~~G--q~a~~~a~~F~~~~~i~g----iIlTK 249 (461)
...++.++++|||| -.+...++.+.++. +..+...|-+++|+|+... .+-..++..+-+.++... ++++|
T Consensus 85 --~~~~~~i~l~DT~G~i~~~p~~lie~~~~tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NK 162 (204)
T cd01878 85 --LPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNK 162 (204)
T ss_pred --ECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf --569977999836864467837899999999999973989999997998536677999999999806555760788867
Q ss_pred CCCCCCCCHHHHHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf 1576633036777888478730261--586723210
Q gi|254780711|r 250 MDGDGRGGAALSMRTVTGKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 250 lD~~akgG~als~~~~~~~PI~fig--~GE~~~dle 283 (461)
.|--... ...........|+.+|+ +|+.++.|.
T Consensus 163 iDl~~~~-~~~~~~~~~~~~~i~ISA~~g~Gid~L~ 197 (204)
T cd01878 163 IDLLDDE-ELEERLEAGRPDAVFISAKTGEGLDELL 197 (204)
T ss_pred CCCCCCH-HHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 0479957-5899997089987999886894999999
No 92
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.76 E-value=0.00067 Score=49.98 Aligned_cols=115 Identities=23% Similarity=0.209 Sum_probs=72.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHH--HHHHHHH
Q ss_conf 189962344333468899999999861489507820542210047799998510347422233210-3689--9999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEK--IAIRATQ 177 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~--i~~~a~~ 177 (461)
.++++.|..|+||||.+.-+|.++..+.+++|++++..-- ..--..+.++...++|+.....+. +..+ -+.++..
T Consensus 20 ~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~--~~~~~~R~~a~~~~v~~~~i~~~~~~~~~~~~~~~~~~ 97 (186)
T pfam03796 20 DLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMS--AEQLAERLLSSESRISSSKLRSGQLSDEDWERLAEAAG 97 (186)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC--HHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 1799996799987999999999999970996687547552--99999999998626765554125121679999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9974158869983344222112468999999851385110003101
Q gi|254780711|r 178 SARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
. ..++.+.+.|+++. . -+++...++++....+++ ++|+|-
T Consensus 98 ~--~~~~~l~i~~~~~~-t-~~~i~~~i~~~~~~~~~~--~vvvDy 137 (186)
T pfam03796 98 E--LSEAPLYIDDTPGL-S-LSELRAQARRLKREHGLG--LIVIDY 137 (186)
T ss_pred H--HHCCCEEEECCCCC-C-HHHHHHHHHHHHHHCCCC--EEEEEH
T ss_conf 9--85398688479999-8-999999999999855998--899748
No 93
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=97.76 E-value=0.001 Score=48.60 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=34.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 899623443334688999999998614895078205422
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
.|.+-|==|+|||||+.-||+-|.. .|+||++|-||-+
T Consensus 3 ~ia~yGKGGVGKTTTavNLAaALA~-~GkkVLlID~DPq 40 (292)
T PRK13230 3 QIAFYGKGGIGKSTTVCNLAAALSK-SGKKVIVVGCDPK 40 (292)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCC
T ss_conf 7999179985789899999999998-7995999776797
No 94
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.72 E-value=0.00021 Score=53.76 Aligned_cols=163 Identities=20% Similarity=0.272 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999999871877421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r 76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI 155 (461)
Q Consensus 76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~ 155 (461)
..+.++|.+++......-.... ...|+++|+.-+||.|-.=.|+ . +..++|+
T Consensus 194 ~~l~~~i~~ll~~~~~g~~l~~--G~~v~i~G~PN~GKSSL~N~L~----~---~drAIVS------------------- 245 (445)
T PRK05291 194 EELIAELEKLLASAKQGELLRE--GLKVVIAGRPNVGKSSLLNALL----G---EERAIVT------------------- 245 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC--CCEEEEECCCCCCHHHHHHHHH----C---CCCEEEC-------------------
T ss_conf 9999999999999874178635--9869988999876899999985----7---8746731-------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-HHCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCHHHHH
Q ss_conf 474222332103689999999999-74158869983344222112468999---99985138511000310111225688
Q gi|254780711|r 156 QVDTLEVIPEQSPEKIAIRATQSA-RDGGYDAVILDTAGRNHINDSLMQEI---SEIKSLTNPHEILLVADALTGQDAVH 231 (461)
Q Consensus 156 ~v~~~~~~~~~dp~~i~~~a~~~a-~~~~~D~iiiDTaGR~~~d~~lm~El---~~i~~~~~p~e~~lV~da~~Gq~a~~ 231 (461)
++| |.. +|.++.- .-+++-+.|+||||=-..+ +.++++ +....+-+.|-+++|+|+..+.+..+
T Consensus 246 ~ip------GTT-----RD~ie~~l~l~G~~v~l~DTAGiR~t~-d~IE~~GI~ra~~~~~~ADlil~v~D~s~~~~~~~ 313 (445)
T PRK05291 246 DIA------GTT-----RDVIEEHINLDGIPLRLIDTAGIRETE-DEVEKIGIERSRKAIEEADLVLLVLDASEPLTEED 313 (445)
T ss_pred CCC------CCC-----CCEEEEEEEECCEEEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCH
T ss_conf 899------974-----040223689999899999899766557-45889999999999983999999987998887225
Q ss_pred HHHHHHHHCC--CCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEE--CCCCCCCCCCCCHH
Q ss_conf 8898876358--440776411576633036777888478730261--58672321001368
Q gi|254780711|r 232 LARNFDKIVD--LTGIILTRMDGDGRGGAALSMRTVTGKPIKAIG--TGEKINDLENFFPD 288 (461)
Q Consensus 232 ~a~~F~~~~~--i~giIlTKlD~~akgG~als~~~~~~~PI~fig--~GE~~~dle~F~p~ 288 (461)
. .+.+.+. -.=+|++|.|=... ...+.++.+|+ +|+.++.|...=.+
T Consensus 314 ~--~~~~~~~~~~~i~V~NK~DL~~~--------~~~~~~~i~iSak~g~Gi~~L~~~i~~ 364 (445)
T PRK05291 314 K--EILEEFKNKPVIVVLNKADLTGE--------KIDGLPVIRISAKTGEGIDELEEALKQ 364 (445)
T ss_pred H--HHHHHCCCCCEEEEEEHHHCCCC--------CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9--99985179987999851204665--------347897599983788699999999999
No 95
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=97.71 E-value=0.00031 Score=52.57 Aligned_cols=165 Identities=19% Similarity=0.205 Sum_probs=85.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH------------HHHHHHHHHHCCC-----------CC
Q ss_conf 899623443334688999999998614895078205422100------------4779999851034-----------74
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA------------AQEQLRYLGEQIQ-----------VD 158 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a------------A~eQL~~~a~~~~-----------v~ 158 (461)
-|.+.|==|+|||||++-||+.|.. .|+||++|.||-.--. -.+.|+..++.+. +.
T Consensus 3 ~iaiyGKGGVGKSTtt~NLaAALA~-~GkkVl~IgcDPk~dsT~~L~gg~~~~tvld~l~~~~~~~~ledvi~~g~~gi~ 81 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAE-MGKKVMVVGCDPKADSTRLLLGGLQQKTVLDTLREEGEDVELEDIIKEGYGNTR 81 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHEEECCCCEE
T ss_conf 7999799855476789999999997-899799989898453667873899899789999862877677894431789818
Q ss_pred CCCCC---CCC---H-HHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HC
Q ss_conf 22233---210---3-6899999999997----4158869983344222112468999999851385110003101--11
Q gi|254780711|r 159 TLEVI---PEQ---S-PEKIAIRATQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LT 225 (461)
Q Consensus 159 ~~~~~---~~~---d-p~~i~~~a~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~ 225 (461)
++... ++- . -...+.+-++... ...+|+||+|..|-.--.. ...-.+..-.+|+++|..+ |.
T Consensus 82 cveaggp~pg~gcagrgii~~~~~L~~l~~~~~~~~~DyVl~DvLGdvvcgg-----Fa~pir~~~A~eV~IVts~E~~A 156 (274)
T PRK13235 82 CTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGG-----FAMPIRDGKAEEIYIVCSGEMMA 156 (274)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC-----CCCCCCCCCCCEEEEEECCCHHH
T ss_conf 9868998756675763152589999881775433577689981378531245-----11551006587899991683689
Q ss_pred CHHHHHH---HHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 2256888---8988763--584407764115766330367778884787302
Q gi|254780711|r 226 GQDAVHL---ARNFDKI--VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKA 272 (461)
Q Consensus 226 Gq~a~~~---a~~F~~~--~~i~giIlTKlD~~akgG~als~~~~~~~PI~f 272 (461)
=..|-++ .+.|.+. +.+.|+|++.-+.+..-..+=.....++.++..
T Consensus 157 L~aannI~k~i~~~~~~~~~~l~Gii~N~r~~~~~~~~v~~fa~~~g~~vi~ 208 (274)
T PRK13235 157 MYAANNICKGILKYADAGGVRLGGLICNSRKVDNEREMIEELARKLGTQMIH 208 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 9999999999999974379548899973677875789999999974993699
No 96
>KOG0923 consensus
Probab=97.71 E-value=0.00018 Score=54.33 Aligned_cols=124 Identities=23% Similarity=0.325 Sum_probs=83.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CCCC-----CC
Q ss_conf 88418996234433346889999999--986148950782054221004779999851034742-----2233-----21
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYH--LKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LEVI-----PE 165 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~--~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~~~-----~~ 165 (461)
....|+.++|-+||||||-+-..-+- |.+ +|++ +.|+.-.|.||..--.-.|+.+||.. |+.. .+
T Consensus 278 ~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk-~gk~--IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSe 354 (902)
T KOG0923 278 KEHQVLIIVGETGSGKTTQIPQYLYEAGYTK-GGKK--IGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSE 354 (902)
T ss_pred HHCCEEEEECCCCCCCCCCCCHHHHHCCCCC-CCCE--EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf 8670899975788986445628988542135-8946--740685068877799999998574014314448885035674
Q ss_pred CHHHHHH------HHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf 0368999------9999999741588699833442221124-6899999985138511000310111
Q gi|254780711|r 166 QSPEKIA------IRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADALT 225 (461)
Q Consensus 166 ~dp~~i~------~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da~~ 225 (461)
+...+.. ++-+.......|.|||||-|---....+ |+.=++.|.++ .||..+|+.+|+.
T Consensus 355 kTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~-RpdLKllIsSAT~ 420 (902)
T KOG0923 355 KTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-RPDLKLLISSATM 420 (902)
T ss_pred CEEEEEECCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEECCCC
T ss_conf 12243224306799871463422335999602432003456799987888750-8760477322226
No 97
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.71 E-value=0.0055 Score=43.01 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=84.0
Q ss_pred HHHHCCCCCCCHHHHHH-HHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH--------HHHHH
Q ss_conf 98742888789899999-9999999998-52469699999999999998303111269989999999--------99999
Q gi|254780711|r 13 FQNITGKGSLSETDISN-TLREIRRTFL-EADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKI--------VHDEL 82 (461)
Q Consensus 13 ~~~l~~~~~l~e~~i~~-~l~ei~~aLL-eaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~ki--------v~~eL 82 (461)
.++|...+.-|-+++-. .-+| |. ...++...|.++++.+++.+.- ....+..+...+- =..+|
T Consensus 20 ~~kL~~aG~~tv~~l~~~~~~~----L~~~~gis~~~a~ki~~~a~~~~~~---~~f~Ta~el~~~r~~~~~isTg~~~l 92 (318)
T PRK04301 20 AEKLREAGYDTVEAIAVASPKE----LSEIAGISESTAAKIIEAAREALDI---GGFETALEVLERRKSIGKITTGSKEL 92 (318)
T ss_pred HHHHHHCCCCCHHHHHCCCHHH----HHHHHCCCHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHCCCCCCCCCHHH
T ss_conf 9999986995499987489999----9985099999999999999985365---79826999999863478247888788
Q ss_pred HHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH---HHCC--CCEEEECC-CCCCCHHHHHHHHHHHCC-
Q ss_conf 9871877421000258841899623443334688999999998---6148--95078205-422100477999985103-
Q gi|254780711|r 83 VEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLK---TLKK--KKILMASL-DVHRPAAQEQLRYLGEQI- 155 (461)
Q Consensus 83 ~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~---~~~~--~kV~lv~~-Dt~R~aA~eQL~~~a~~~- 155 (461)
-.+|++.-. .-.+.=++|..|+|||.-|-.||--.+ ..+| .+|+.|.+ .+|||-=+.|+ |+..
T Consensus 93 D~lLgGGi~-------~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~peRi~qi---a~~~g 162 (318)
T PRK04301 93 DELLGGGIE-------TQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRPERIEQM---AEGLG 162 (318)
T ss_pred HHHCCCCCC-------CCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCHHHHHHH---HHHHC
T ss_conf 805479833-------67078886688787035667767653376777898863799956898697999999---99849
Q ss_pred --------CCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCC
Q ss_conf --------47422233210368999999999974-158869983344222
Q gi|254780711|r 156 --------QVDTLEVIPEQSPEKIAIRATQSARD-GGYDAVILDTAGRNH 196 (461)
Q Consensus 156 --------~v~~~~~~~~~dp~~i~~~a~~~a~~-~~~D~iiiDTaGR~~ 196 (461)
+|-++...+..+-..++....+.+.. ..+.+|+||..--+.
T Consensus 163 ~d~~~~L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~alf 212 (318)
T PRK04301 163 LDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGNNIKLVIVDSLTAHF 212 (318)
T ss_pred CCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHE
T ss_conf 99789864026861399899999999999999627880499994342321
No 98
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.0035 Score=44.46 Aligned_cols=219 Identities=11% Similarity=0.093 Sum_probs=116.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf 5884189962344333468899999999861489507820542210047799998510347422233210-368999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA 175 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a 175 (461)
.+-|+.++|+|+.|+||||++--||+.+--..+. -.-.|..- +.-+........+++.....+ .-++-+++-
T Consensus 35 ~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~--~~~PCg~C-----~sC~~i~~g~~~DviEidaasn~~VddIR~l 107 (560)
T PRK06647 35 NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP--TIMPCGEC-----FSCKSIDNDSSLDVIEIDGASNTSVQDVRQI 107 (560)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCC-----HHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 9977436632899878999999999996599999--98888788-----7888874599987576436454888999999
Q ss_pred HHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC-----------
Q ss_conf 99997----415886998334422211246899999985138511000310111225688889887635-----------
Q gi|254780711|r 176 TQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV----------- 240 (461)
Q Consensus 176 ~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~----------- 240 (461)
.+.+. ..+|-|+|||-|-++..+. ..-|.++.+.- |..++|++-++--+....++..=.+.+
T Consensus 108 ~e~v~~~P~~~~yKV~IIDEahmLt~~A--~NALLKtLEEP-P~~~~FILaTte~~KI~~TI~SRCQ~f~Fk~i~~~~I~ 184 (560)
T PRK06647 108 KEEIMFPPASSRYRVYIIDEVHMLSNSA--FNALLKTIEEP-PPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIY 184 (560)
T ss_pred HHHHCCCCCCCCEEEEEECCHHHCCHHH--HHHHHHHHHCC-CCCEEEEEECCCHHHCHHHHHHHHEEEECCCCCHHHHH
T ss_conf 9986328766870699964656559999--99999986348-87559999779947684899965104105559999999
Q ss_pred ------------CCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf ------------844----0776411576633036777888478730261586723210013688998773586278899
Q gi|254780711|r 241 ------------DLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLV 304 (461)
Q Consensus 241 ------------~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~ 304 (461)
.++ .+|.-+-||+-| -|||+-.. -|.| |.| +++ ..-+..+||.=|-..+.
T Consensus 185 ~~L~~I~~~E~i~~e~~AL~lIa~~a~Gs~R--Dalslldq---~i~~-~~~-~i~-------~~~v~~~lG~~~~~~~~ 250 (560)
T PRK06647 185 EMLKKVCLEDDIKYEDEALKWIAYKSGGSVR--DAYTLFDQ---IVSF-SNS-DIT-------LEQIRSKMGLTSDEFLE 250 (560)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHC-CCC-CCC-------HHHHHHHHCCCCHHHHH
T ss_conf 9999999867988799999999997789588--89999999---9960-799-778-------99999986898889999
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9874211267--8998886531046379999999999
Q gi|254780711|r 305 EKAARNLNEK--QAALTAKKIAKGKFDLEDLAEQFRQ 339 (461)
Q Consensus 305 e~~~~~~d~~--~~~~l~~k~~~g~F~l~Df~~Ql~~ 339 (461)
+-+....+.+ ++-....++...-++.+.|++.+-.
T Consensus 251 ~l~~~i~~~d~~~~l~~~~~i~~~G~d~~~fl~~li~ 287 (560)
T PRK06647 251 KLSSSILNKDLKELLCVLDAIFLSGVSVEQFLLDCIE 287 (560)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999469999999999999809999999999999
No 99
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=97.71 E-value=0.00011 Score=56.07 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=74.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
-||++|++|||||||+|=+--|+ ++ ++..-++|-- |-.+-+=..-..=+---+-|.|--+- .+|+.+|-.
T Consensus 129 LiLVTGPTGSGKSTTlAsmIDyI-N~-~~~~HIiTIE-------DPIEyvh~~~~sli~QREvG~DT~sF-~~ALraALR 198 (350)
T TIGR01420 129 LILVTGPTGSGKSTTLASMIDYI-NK-NKAGHIITIE-------DPIEYVHKNKRSLINQREVGLDTLSF-ANALRAALR 198 (350)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HC-CCCCCCEEEE-------CCEEEEECCCEEEEECCCCCCCHHHH-HHHHHHHHC
T ss_conf 38987688986789999999787-40-3888825631-------77314104770245436246754579-999768410
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCHHC-CHHHHHHHHHHHHHCC
Q ss_conf 158869983344222112468999999851385110-00310111-2256888898876358
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEI-LLVADALT-GQDAVHLARNFDKIVD 241 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~-~lV~da~~-Gq~a~~~a~~F~~~~~ 241 (461)
+.=||||| | =|.-++.|.-++.--|+ +||+ ||. -++|+.....+=+.+|
T Consensus 199 eDPDvILi---G-------E~RD~ET~~~AL~AAETGHLV~-gTLHTnsA~~ti~RIid~FP 249 (350)
T TIGR01420 199 EDPDVILI---G-------EMRDLETVELALTAAETGHLVF-GTLHTNSAAKTIERIIDVFP 249 (350)
T ss_pred CCCCEEEE---E-------CCCCHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHCCCC
T ss_conf 28988998---2-------5562789999998742131567-66664238887677742597
No 100
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=97.70 E-value=0.00087 Score=49.10 Aligned_cols=68 Identities=24% Similarity=0.251 Sum_probs=48.5
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9998718774210002588418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT 159 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~ 159 (461)
.|-++|++.- .+.+++++.|..|+||||-+..+++.-..+.|.+|+.++++-- .+|+...+..++.++
T Consensus 7 ~LD~~l~GGi-------~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~----~~~l~~~~~~~g~~~ 74 (231)
T pfam06745 7 GLDEILKGGI-------PEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEP----PEDLRENAKSFGWDL 74 (231)
T ss_pred HHHHHCCCCC-------CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----HHHHHHHHHHCCCCH
T ss_conf 6886316998-------2996999985897259999999999999865896899981379----999999999829985
No 101
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=97.70 E-value=0.00075 Score=49.58 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=74.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
|+++|+.+|||||.+..|+.++.. ++++|.+|+.|+.+..- -++.....++..-...+.+++.+-.+
T Consensus 2 ivl~G~P~SGKSt~A~~L~~~l~~-~~~~v~vi~d~~~~~~~------------~~y~~s~~Ek~~R~~l~s~v~r~Ls~ 68 (266)
T pfam08433 2 IILTGLPSSGKSTRAKELAKYLEE-KGYDVIVISDESLGIES------------DDYKDSKKEKFLRGSLRSAVKRDLSK 68 (266)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 798579999688999999999997-59938997800126753------------10001047899999999999875166
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf 588699833442221124689999998513851100031011122568888988763
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI 239 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~ 239 (461)
-++||+|. +.+=...--||--+.+...-....+-+++ ..+++..+++.
T Consensus 69 -~~iVIlD~---~NYiKG~RYEL~C~Ak~~~t~~c~v~~~~-----p~e~~~~~N~~ 116 (266)
T pfam08433 69 -NTIVIVDS---LNYIKGFRYELYCIAKEAKTTYCVVYCKA-----PLDTCLKWNEE 116 (266)
T ss_pred -CCEEEECC---CCCHHHHHHHHHHHHHHCCCCEEEEEECC-----CHHHHHHHHCC
T ss_conf -88899548---74045689999999986388848999689-----98999986214
No 102
>COG4240 Predicted kinase [General function prediction only]
Probab=97.69 E-value=0.00048 Score=51.07 Aligned_cols=76 Identities=26% Similarity=0.295 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 99999999998718774210002588418996234433346889999999986148950782054221004779999
Q gi|254780711|r 74 VIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRY 150 (461)
Q Consensus 74 i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~ 150 (461)
+.+++.+-...++.. -.+-....+.|.++-++|+|||||||+.+-|-..+..+++.+++-.+.|.|----.|||+.
T Consensus 25 ~~~~~~dl~Lpll~K-iap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~L 100 (300)
T COG4240 25 FAALAQDLHLPLLAK-IAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRL 100 (300)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHH
T ss_conf 889999987788986-4454421279639985268887653599999999997365306886645531043899999
No 103
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.69 E-value=0.00068 Score=49.91 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=82.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf 1899623443334688999999998614895078205422100477999985103474222332103689999999999-
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA- 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a- 179 (461)
-+++++|..|+||||.+-+|+..+.. ....+..+. ++. ....|=|+.++..+|++.- ......-..-..+-+...
T Consensus 44 g~~lltGe~GtGKTtllr~l~~~l~~-~~~~~~~i~-~~~-l~~~~ll~~i~~~lg~~~~-~~~~~~~~~~l~~~L~~~~ 119 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQ-ERVVAAKLV-NTR-VDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC-CCEEEEEEC-CCC-CCHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHH
T ss_conf 65999729989889999999984593-454899976-999-9999999999998598988-9899999999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHH------HHHHHHHHCCCCCEEEEECCC
Q ss_conf 7415886998334422211246899999985138511000310111225688------889887635844077641157
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVH------LARNFDKIVDLTGIILTRMDG 252 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~------~a~~F~~~~~i~giIlTKlD~ 252 (461)
.....=|+|||-|-.+ +.+.+++|+.+.+.-.....++.+ -..||.-.+ ..+.|.+.+.+ .+-+..|+.
T Consensus 120 ~~g~~~vliIDEAq~L--~~~~Le~Lr~L~n~e~~~~~ll~i-iL~GqpeL~~~L~~~~~~~l~qRI~~-~~~L~pl~~ 194 (269)
T TIGR03015 120 AAGKRALLVVDEAQNL--TPELLEELRMLSNFQTDNAKLLQI-FLVGQPEFRETLQSPQLQQLRQRIIA-SCHLGPLDR 194 (269)
T ss_pred HCCCCEEEEEECHHHC--CHHHHHHHHHHHCCCCCCCCCEEE-EEECCHHHHHHHCCCCHHHHHHCEEE-EEEECCCCH
T ss_conf 6699469997242219--999999999997013588870489-99578679998727402545550767-998479998
No 104
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.0051 Score=43.23 Aligned_cols=226 Identities=16% Similarity=0.221 Sum_probs=118.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHH
Q ss_conf 588418996234433346889999999986148--950782054221004779999851034742223321-03689999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK--KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIAI 173 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~--~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~~ 173 (461)
..-|+.+||.|+.|+|||||+-=+|+-+--... ...-.-.|.. -+.-+.+...-.++++..... ..-++-++
T Consensus 40 ~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~-----c~~c~~i~~~~~~dv~EiDaas~~gv~~ir 114 (507)
T PRK06645 40 DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEK-----CTNCISFNNHNHPDIIEIDAASKTSVDDIR 114 (507)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf 996634774587997889999999999679998888998888888-----767899865899985996378888889999
Q ss_pred HHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH-------
Q ss_conf 9999997----415886998334422211246899999985138511000310111225-----688889887-------
Q gi|254780711|r 174 RATQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD------- 237 (461)
Q Consensus 174 ~a~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~------- 237 (461)
+-++.+. ...|-|.|||-+-.+..+ -+.-|.+..+.- |.++.|++ |+|--+ .+...+.|+
T Consensus 115 ~l~~~~~~~p~~~~~kv~iidE~hmls~~--a~nallktlEep-p~~~~Fi~-atte~~kip~ti~srcq~f~~~~i~~~ 190 (507)
T PRK06645 115 RIIESAEYKPLQGKHKIFIIDEVHMLSKG--AFNALLKTLEEP-PPHIIFIF-ATTEVQKIPATIISRCQRYDLRRLSFE 190 (507)
T ss_pred HHHHHCCCCCCCCCEEEEEECCHHHCCHH--HHHHHHHHHHCC-CCCEEEEE-ECCCHHHCCHHHHHHCEEEEEECCCHH
T ss_conf 99863551787674358995214224899--999999974278-64438999-748536483788854327875459979
Q ss_pred ------------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHE-ECCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf ------------635844----077641157663303677788847873026-158672321001368899877358627
Q gi|254780711|r 238 ------------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAI-GTGEKINDLENFFPDRIANRILGMGDV 300 (461)
Q Consensus 238 ------------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fi-g~GE~~~dle~F~p~~~~~riLGmgD~ 300 (461)
+.+.++ .+|...-||+.|- |||+-.. -|.|- +.|+.++ ..-|..+||.-|-
T Consensus 191 ~i~~~l~~i~~~E~~~~~~~al~~ia~~a~Gs~RD--alslldq---ai~~~~~~~~~I~-------~~~V~~MLGl~Dr 258 (507)
T PRK06645 191 EIFKLLEYITKQENLKADIEALRIIAYKSEGSARD--AVSILDQ---AASMSAKSDNIIS-------PQVINQMLGLVDL 258 (507)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH--HHHHHHH---HHHHHCCCCCCCC-------HHHHHHHHCCCCH
T ss_conf 99999999999768777789999999855998678--9999999---9997548987026-------9999998389985
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHCCCCC----HHHHHHHHHHHHCC
Q ss_conf 88999874211267899--888653104637----99999999998511
Q gi|254780711|r 301 VSLVEKAARNLNEKQAA--LTAKKIAKGKFD----LEDLAEQFRQTQKI 343 (461)
Q Consensus 301 ~~l~e~~~~~~d~~~~~--~l~~k~~~g~F~----l~Df~~Ql~~i~km 343 (461)
-.+++-.+..++.+..+ .....+-..-.+ ++||++-+..+.+.
T Consensus 259 s~lidL~e~Il~Gd~~kaL~~l~~iy~~G~Dp~~iL~DLLeiih~i~~i 307 (507)
T PRK06645 259 SVIIEFVEYIIERETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKV 307 (507)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6799999999829999999999999984999999999999999999999
No 105
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=97.67 E-value=0.00024 Score=53.31 Aligned_cols=130 Identities=22% Similarity=0.182 Sum_probs=69.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--------------HHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 62344333468899999999861489507820542210047799--------------9985103474222332103689
Q gi|254780711|r 105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--------------RYLGEQIQVDTLEVIPEQSPEK 170 (461)
Q Consensus 105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--------------~~~a~~~~v~~~~~~~~~dp~~ 170 (461)
++|+-||||||-|+.+..|+.. .+++|.+|.-|- |+ |.+ +..-+..+. .+.|.
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~-~~r~~~vvNLDP---A~-e~~pY~~~iDIrd~i~~~dvM~~~~L----GPNGa---- 67 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPL-RGRSVYVVNLDP---AA-ENLPYEADIDIRELITVADVMEDYGL----GPNGA---- 67 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCC---CC-CCCCCCCCCCHHHHCCHHHHHHHCCC----CCCHH----
T ss_conf 9898989889999999999997-799759997898---66-58999877717874679999998298----97389----
Q ss_pred HHHHHHHHH----------HHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHH
Q ss_conf 999999999----------741588699833442221--12468999999851385110003101112256888898876
Q gi|254780711|r 171 IAIRATQSA----------RDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDK 238 (461)
Q Consensus 171 i~~~a~~~a----------~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~ 238 (461)
.-.+++++ .+...|++|+||+|-... -.+-+..+-+....- +--.++++|+.-=++.. .|-.
T Consensus 68 -li~~me~l~~~~d~l~~~l~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~-~~~~v~l~D~~~~~d~~----~fis 141 (234)
T pfam03029 68 -LTVAMDFGRITLDWLLEELEYEDDYYLFDTPGQIELFTHWDSLARGVEALEAS-RLGAVYLVDTRRLTDPI----DFFS 141 (234)
T ss_pred -HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCC-CEEEEEEECHHHHCCHH----HHHH
T ss_conf -99999999999999999852557769983698357654002699999997128-73899984257746888----8999
Q ss_pred H----------CCC-CCEEEEECCCC
Q ss_conf 3----------584-40776411576
Q gi|254780711|r 239 I----------VDL-TGIILTRMDGD 253 (461)
Q Consensus 239 ~----------~~i-~giIlTKlD~~ 253 (461)
. +++ .=.++||.|--
T Consensus 142 ~~L~a~s~m~~l~lP~vnvlsK~Dl~ 167 (234)
T pfam03029 142 GLLYALSIMLRLGLPFVVALNKFDLL 167 (234)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHCC
T ss_conf 99999999997489944310004135
No 106
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.66 E-value=0.00039 Score=51.78 Aligned_cols=214 Identities=19% Similarity=0.166 Sum_probs=104.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC-CCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9962344333468899999999861489507820-5422-1004779999851034742223321036899999999997
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS-LDVH-RPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~-~Dt~-R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
|.++|-.|+||||-+-.|.+.-.. =. +.+=|. ..|. -.-..|+-+ ++.+... +-.+.
T Consensus 2 iai~gH~gaGKTtL~EalL~~ag~-i~-r~G~v~~g~tv~D~~~eE~~R------~isi~~~-------------~~~~~ 60 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGR-IH-KIGEVHGGGATMDFMEQERER------GITIQSA-------------ATTCF 60 (270)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC-CC-CCCEECCCCCCCCCCHHHHHC------CCEEECC-------------EEEEE
T ss_conf 899968999988999999986687-35-581553897556684889876------8707336-------------68999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHH--HHCCC-CCEEEEECCC-CCCC
Q ss_conf 415886998334422211246899999985138511000310111225688889887--63584-4077641157-6633
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFD--KIVDL-TGIILTRMDG-DGRG 256 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~--~~~~i-~giIlTKlD~-~akg 256 (461)
-+++-+-||||+|-. +-..|...-.+++ |-.++|+||..|=++.. -+.|+ +..++ .=++++|||- .+..
T Consensus 61 w~~~~inliDTPG~~----DF~~e~~~aL~~~--D~AviVv~a~~GVe~~T-~~~w~~~~~~~lP~i~fINKmDre~ad~ 133 (270)
T cd01886 61 WKDHRINIIDTPGHV----DFTIEVERSLRVL--DGAVAVFDAVAGVEPQT-ETVWRQADRYNVPRIAFVNKMDRTGADF 133 (270)
T ss_pred ECCEEEEEEECCCCH----HHHHHHHHHHHHH--CEEEEEEECCCCHHHHH-HHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 899899998696967----8899999998775--55999984676442636-9999889984999899998878778871
Q ss_pred CHHH-HHHHHHCCCHHH----EECCCCC---CCCC-----CCCHHH---HHHHHHCCCCHHHHHHHHHHHHHHH---HHH
Q ss_conf 0367-778884787302----6158672---3210-----013688---9987735862788999874211267---899
Q gi|254780711|r 257 GAAL-SMRTVTGKPIKA----IGTGEKI---NDLE-----NFFPDR---IANRILGMGDVVSLVEKAARNLNEK---QAA 317 (461)
Q Consensus 257 G~al-s~~~~~~~PI~f----ig~GE~~---~dle-----~F~p~~---~~~riLGmgD~~~l~e~~~~~~d~~---~~~ 317 (461)
-..| ++...++.++.- ||.|+.. =||- .|+++. ....=+ =.+....++.+.+.+-|. ..+
T Consensus 134 ~~~l~~i~~~lg~~~vp~~~Pig~g~~f~GvvDll~~ka~~y~~~~~~~~~~~~i-P~~~~~~~~~~r~~L~E~vae~Dd 212 (270)
T cd01886 134 FRVVEQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEI-PEDLLEEAEEAREELIETLAEFDD 212 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECC-CHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 6689999998589738898563278974799977878799841789972378137-456689999999988988861489
Q ss_pred HHHHHH-HCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 888653-1046379999999999851148
Q gi|254780711|r 318 LTAKKI-AKGKFDLEDLAEQFRQTQKIGG 345 (461)
Q Consensus 318 ~l~~k~-~~g~F~l~Df~~Ql~~i~kmG~ 345 (461)
++++|. ..+.++.+++.+-++.--.-|.
T Consensus 213 eLmekyle~~~l~~~el~~~l~~a~~~g~ 241 (270)
T cd01886 213 ELMEKYLEGEEITEEEIKAAIRKGTIANK 241 (270)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999757899999999999999997695
No 107
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.66 E-value=0.00044 Score=51.35 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=96.7
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH---HHHH
Q ss_conf 0258841899623443334688999999998614895078205422100477999985103474222332103---6899
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQS---PEKI 171 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~d---p~~i 171 (461)
+...+-.++=+++-.||||||.+-+....++. ..++++|..|.+-.--.+.++. .|+|.+....+.. -+..
T Consensus 99 f~~~gv~~lNl~sSPGSGKTtLLe~ti~~L~~--~~~~aVIeGD~~T~~DA~RI~~----~Gv~avQInTG~~CHLDA~M 172 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKD--SVPCAVIEGDQQTVNDAARIRA----TGTPAIQVNTGKGCHLDAQM 172 (290)
T ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHH----CCCCEEEECCCCCCCCCHHH
T ss_conf 99879189993069987889999999998733--6757999604235667999997----69958995479976759999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 999999997415886998334422211246899999985138511000310111225-6888898876358440776411
Q gi|254780711|r 172 AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-AVHLARNFDKIVDLTGIILTRM 250 (461)
Q Consensus 172 ~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-a~~~a~~F~~~~~i~giIlTKl 250 (461)
+.+|+..+.....|+++|.-.|-+---.+ ++ +-.+..+.|++-+-|-| -..--..|..+ +-+|+||.
T Consensus 173 V~~al~~l~l~~~dllfIENVGNLVCPA~--------FD-LGE~~kVvvlSVtEGeDKPlKYP~mF~~a---d~vlinKi 240 (290)
T PRK10463 173 IADAAPRLPLDDNGILFIENVGNLVCPAS--------FD-LGEKHKVAVLSVTEGEDKPLKYPHMFAAA---SLMLLNKV 240 (290)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCCCC--------CC-CCCCEEEEEEEECCCCCCCCCCHHHHHHC---CEEEEEHH
T ss_conf 99999848987798999812788435512--------03-67761799997068888644476676425---78998656
Q ss_pred CCCCCC
Q ss_conf 576633
Q gi|254780711|r 251 DGDGRG 256 (461)
Q Consensus 251 D~~akg 256 (461)
|=-.-.
T Consensus 241 DLlp~~ 246 (290)
T PRK10463 241 DLLPYL 246 (290)
T ss_pred HHHHHC
T ss_conf 512202
No 108
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.66 E-value=0.00047 Score=51.14 Aligned_cols=204 Identities=23% Similarity=0.350 Sum_probs=107.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-----HHHHH
Q ss_conf 9962344333468899999999861489507820542210047799998510347422233210368999-----99999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA-----IRATQ 177 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~-----~~a~~ 177 (461)
|.++|-.|+||||.+-.|.++-.. +-|+|.++.=.+.++ .+|.+.. .-++-
T Consensus 2 i~iigH~~aGKTtL~E~lL~~~g~------------i~~~G~V~~g~t~~D------------~~~~E~~RgiSi~s~~~ 57 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGA------------IDRLGSVEDGTTVSD------------YDPEEIKRKMSISTSVA 57 (268)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC------------CCCCCCCCCCCCCCC------------CCHHHHHCCCCEECCEE
T ss_conf 899908999989999999996699------------665765458973577------------87889867967513557
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 997415886998334422211246899999985138511000310111225-----688889887635844077641157
Q gi|254780711|r 178 SARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFDKIVDLTGIILTRMDG 252 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~~~~~i~giIlTKlD~ 252 (461)
.+.-+++-+=||||+|- .+-..|...-.+++ |-.++|+||..|-+ ..++++.++ +| .=+.++|||-
T Consensus 58 ~~~w~~~~inliDTPG~----~DF~~e~~~aL~v~--D~Av~Vida~~GVe~~T~~~w~~~~~~~--iP-~i~fINKmDr 128 (268)
T cd04170 58 PLEWKGHKINLIDTPGY----ADFVGETRAALRAA--DAALVVVSAQSGVEVGTEKLWEFADEAG--IP-RIIFINKMDR 128 (268)
T ss_pred EEEECCEEEEEEECCCC----HHHHHHHHHHHCCC--CEEEEEECCCCCHHHHHHHHHHHHHHCC--CC-EEEEEECCCC
T ss_conf 88889979999869897----57999999984047--8399994187547687999999999859--99-8999978787
Q ss_pred -CCCCCHHH-HHHHHHCCCHHH----EECCCCC---CCCC-----CCC----------HHHHHHHHHCCCCHHHHHHHHH
Q ss_conf -66330367-778884787302----6158672---3210-----013----------6889987735862788999874
Q gi|254780711|r 253 -DGRGGAAL-SMRTVTGKPIKA----IGTGEKI---NDLE-----NFF----------PDRIANRILGMGDVVSLVEKAA 308 (461)
Q Consensus 253 -~akgG~al-s~~~~~~~PI~f----ig~GE~~---~dle-----~F~----------p~~~~~riLGmgD~~~l~e~~~ 308 (461)
.|..-.+| ++....+.++.- ||.|+.. =||- .|+ |+....+...+ -..|+|.+.
T Consensus 129 ~~ad~~~~l~~i~~~lg~~~vp~~~Pig~g~~f~GvvDl~~~~a~~~~~~~~~~~~~ip~~~~~~~~~~--r~~L~E~va 206 (268)
T cd04170 129 ERADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEA--REELLEAVA 206 (268)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCEECCCCHHHHHHHHHH--HHHHHHHHH
T ss_conf 899647799999998689849999665268871488766667799923999722705977888889999--888898887
Q ss_pred HHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 211267899888653-10463799999999998511488
Q gi|254780711|r 309 RNLNEKQAALTAKKI-AKGKFDLEDLAEQFRQTQKIGGI 346 (461)
Q Consensus 309 ~~~d~~~~~~l~~k~-~~g~F~l~Df~~Ql~~i~kmG~l 346 (461)
+ . .+++++|. ..+.++-+++..-++.--.-|.+
T Consensus 207 e----~-Dd~L~ekyle~~~l~~~el~~~l~~~~~~g~~ 240 (268)
T cd04170 207 E----T-DDELMEKYLEGGELTEEELHAGLRRALRAGLL 240 (268)
T ss_pred H----C-CHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 4----3-89999998678998999999999999985958
No 109
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=97.65 E-value=0.0015 Score=47.27 Aligned_cols=145 Identities=26% Similarity=0.275 Sum_probs=80.9
Q ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-------------HHHHHHHHH---------CCC
Q ss_conf 4189962-34433346889999999986148950782054221004-------------779999851---------034
Q gi|254780711|r 100 PLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA-------------QEQLRYLGE---------QIQ 156 (461)
Q Consensus 100 p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA-------------~eQL~~~a~---------~~~ 156 (461)
.++|-++ |==|+||||++|-|+..+...++++|+++-+|..-+.= .+=|+..+. .-|
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHCCCCHHHEEEECCCCC
T ss_conf 78999984588756898998699999964897699996588887288885888885509999707787768023157689
Q ss_pred CCCCCCCCCCHHHHHH-------HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-C-H
Q ss_conf 7422233210368999-------99999997415886998334422211246899999985138511000310111-2-2
Q gi|254780711|r 157 VDTLEVIPEQSPEKIA-------IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-G-Q 227 (461)
Q Consensus 157 v~~~~~~~~~dp~~i~-------~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-G-q 227 (461)
+.+.+.. .++.... ...++.. .+.+|+|+|||.+-++.+. +..+.. -++.++|..-.. + +
T Consensus 82 l~vipg~--~~~~~~~~~~~~~~~~~~~~l-~~~~D~iliD~~aGl~~~~-----~~~~~~---sd~~viVt~pe~~si~ 150 (262)
T COG0455 82 LYVLPGG--SGLEDLAKLDPEDLEDVIKEL-EELYDYILIDTGAGLSRDT-----LSFILS---SDELVIVTTPEPTSIT 150 (262)
T ss_pred EEEEECC--CCHHHHHHCCHHHHHHHHHHH-HHCCCEEEEECCCCCCHHH-----HHHHHH---CCCEEEEECCCCCHHH
T ss_conf 8996078--876888616988899999998-7529999996899966888-----999873---6817999279852089
Q ss_pred HHHHHHHH-HHHHCCCCC--EEEEECCCCCC
Q ss_conf 56888898-876358440--77641157663
Q gi|254780711|r 228 DAVHLARN-FDKIVDLTG--IILTRMDGDGR 255 (461)
Q Consensus 228 ~a~~~a~~-F~~~~~i~g--iIlTKlD~~ak 255 (461)
+|....+. .+...+..+ +|+.++++...
T Consensus 151 ~A~~~i~~~~~~~~~~~~~~vV~N~v~~~~e 181 (262)
T COG0455 151 DAYKTIKILSKLGLDLLGRRVVLNRVRSTKE 181 (262)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 9999999999738764331589970366665
No 110
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.00032 Score=52.39 Aligned_cols=143 Identities=23% Similarity=0.311 Sum_probs=76.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-----------------EECCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4189962344333468899999999861489507-----------------82054221004779999851034742223
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-----------------MASLDVHRPAAQEQLRYLGEQIQVDTLEV 162 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~-----------------lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~ 162 (461)
+-.|.+.|..||||||-+.|+|..++. +|.+|+ ++..+|-+-+..-- .-.....|.-|..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~-~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~--~~~~~~rvGkY~V 81 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE-KGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILAR--VGFSRPRVGKYGV 81 (179)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEE--CCCCCCCCCEEEE
T ss_conf 459998679984589999999999985-5966513983114208827515999814795579888--4788762104786
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC
Q ss_conf 3210368999999999974158869983344222112468-999999851385110003101112256888898876358
Q gi|254780711|r 163 IPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLM-QEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD 241 (461)
Q Consensus 163 ~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm-~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~ 241 (461)
.-.+.-.++-.+++.|... .|+||||--|-+.....-+ +++..+.+.-+| .+.|+.-. +--..++.+.+
T Consensus 82 -~v~~le~i~~~al~rA~~~-aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp--liatlHrr---sr~P~v~~ik~--- 151 (179)
T COG1618 82 -NVEGLEEIAIPALRRALEE-ADVIIIDEIGPMELKSKKFREAVEEVLKSGKP--LIATLHRR---SRHPLVQRIKK--- 151 (179)
T ss_pred -EHHHHHHHHHHHHHHHHHC-CCEEEEECCCCHHHCCHHHHHHHHHHHCCCCC--EEEEEECC---CCCHHHHHHHH---
T ss_conf -2788899868999988634-99899943363302008899999999658993--79999625---67758998642---
Q ss_pred CCCEEEEECCCCCCC
Q ss_conf 440776411576633
Q gi|254780711|r 242 LTGIILTRMDGDGRG 256 (461)
Q Consensus 242 i~giIlTKlD~~akg 256 (461)
..++++- +|..-|.
T Consensus 152 ~~~v~v~-lt~~NR~ 165 (179)
T COG1618 152 LGGVYVF-LTPENRN 165 (179)
T ss_pred CCCEEEE-ECCCHHH
T ss_conf 4877999-7512156
No 111
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.005 Score=43.32 Aligned_cols=219 Identities=14% Similarity=0.132 Sum_probs=113.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHH
Q ss_conf 58841899623443334688999999998614895-0782054221004779999851034742223321-036899999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIAIR 174 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~~~ 174 (461)
..-|+..+|+|+.|+||||++--+|+.+--..... -..-.|+.- +........+++..... ..-++-+++
T Consensus 35 ~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC--------~~I~~g~h~DviEIdaasn~gIDeIRe 106 (613)
T PRK05896 35 NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC--------ESINTNQSVDIVELDAASNNGVDEIRN 106 (613)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH--------HHHHCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 997622775589984889999999999669999999988888789--------998569999868840655578899999
Q ss_pred HHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH----HHHH---------
Q ss_conf 999997----41588699833442221124689999998513851100031011122568888----9887---------
Q gi|254780711|r 175 ATQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA----RNFD--------- 237 (461)
Q Consensus 175 a~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a----~~F~--------- 237 (461)
-++.+. ..+|-|+|||.|-++..+.. .-|-++.+.- |..++|++=++--+.-..++ +.|+
T Consensus 107 Lie~~~~~P~~gkyKV~IIDEah~Ln~~Aa--NALLKtLEEP-P~~viFIL~Ttep~KLLpTIlSRCQrf~Fkri~~~~I 183 (613)
T PRK05896 107 IIDNINYLPTTFKYKVYIIDEAHMLSTSAW--NALLKTLEEP-PKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSEL 183 (613)
T ss_pred HHHHHCCCCCCCCCEEEEECCHHHCCHHHH--HHHHHHCCCC-CCCCEEEEEECCHHHCCHHHHHCCCCEECCCCCHHHH
T ss_conf 999708587579945999816221799999--9999853489-8783799982881549376640355001788998999
Q ss_pred ----------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf ----------635844----077641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r 238 ----------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 238 ----------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l 303 (461)
+.+.++ .+|...-||+-| -|||+... -+.| + +.+++ -.-+..++|.-|....
T Consensus 184 ~~~L~~I~~kE~i~ie~~AL~~Ia~~adGs~R--DAlslLdQ---~~~~-~-~~~it-------~~~v~~~~g~~~~~~~ 249 (613)
T PRK05896 184 QELLKSIAKKEKIKIEDNAIDKIADLADGSLR--DGLSILDQ---LSTF-K-NKKID-------IEDINKTFGLVDNNKK 249 (613)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHH-C-CCCCC-------HHHHHHHHCCCCHHHH
T ss_conf 99999999973998789999999997688487--89889999---9983-5-68862-------9999999677768999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99874211267--89988865310463799999999998
Q gi|254780711|r 304 VEKAARNLNEK--QAALTAKKIAKGKFDLEDLAEQFRQT 340 (461)
Q Consensus 304 ~e~~~~~~d~~--~~~~l~~k~~~g~F~l~Df~~Ql~~i 340 (461)
++-.......+ +.-.+...+..--+++.-|..++-.+
T Consensus 250 ~~~~~~i~~~d~~~~~~~~~~~~~~g~~~~~~~~~li~~ 288 (613)
T PRK05896 250 INLIELIQKNDIEELRNLINELESKGINFEAFCRDLINL 288 (613)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999985589999999999998067899999999999
No 112
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=97.64 E-value=0.00088 Score=49.05 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=55.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
++.||.|.|+.||||||-+-+|..+|.+ .+.+|.++-.|.+|. .+...++ | ...|-...++.....
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~~-~~~~~~~LDGD~~R~-------~l~~dlg---y---s~~~R~~n~~r~~~l 66 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLFA-QGISVYVLDGDNVRH-------GLNKDLG---F---SEEDRTENIRRIAEV 66 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHC-------CCCCCCC---C---CHHHHHHHHHHHHHH
T ss_conf 9889998898999999999999999997-599779976887750-------1257779---8---989999999999999
Q ss_pred HH--HCCCCEEEEECCCC
Q ss_conf 97--41588699833442
Q gi|254780711|r 179 AR--DGGYDAVILDTAGR 194 (461)
Q Consensus 179 a~--~~~~D~iiiDTaGR 194 (461)
|+ .+.-.+||+.+-.-
T Consensus 67 ak~l~~~g~~VIvs~isp 84 (157)
T pfam01583 67 AKLFADAGLIVITSFISP 84 (157)
T ss_pred HHHHHCCCCEEEEECCCC
T ss_conf 999842896588721578
No 113
>KOG0922 consensus
Probab=97.64 E-value=0.00038 Score=51.87 Aligned_cols=154 Identities=20% Similarity=0.290 Sum_probs=94.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CC-----CCCCCHHH
Q ss_conf 8996234433346889999999--986148950782054221004779999851034742-----22-----33210368
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYH--LKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LE-----VIPEQSPE 169 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~--~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~-----~~~~~dp~ 169 (461)
|+.++|-+||||||-+-++.+. |.. .|+ ++++--.|.||+.=-+..|+..+..+ |. ......-.
T Consensus 68 vlIviGeTGsGKSTQipQyL~eaG~~~-~g~---I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~Tri 143 (674)
T KOG0922 68 VLIVIGETGSGKSTQIPQYLAEAGFAS-SGK---IACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRI 143 (674)
T ss_pred EEEEECCCCCCCCCCHHHHHHHCCCCC-CCC---EEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEE
T ss_conf 799984898985332769998626566-882---7750671677888999999985897676222699845667873369
Q ss_pred ------HHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH--C
Q ss_conf ------9999999999741588699833442221124-689999998513851100031011122568888988763--5
Q gi|254780711|r 170 ------KIAIRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI--V 240 (461)
Q Consensus 170 ------~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~--~ 240 (461)
-+.++.+..--...|++||+|-|---+...+ |+.=|+++.+.- |+..+.|+.|+. ||..-.+=|+.+ +
T Consensus 144 kymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimSATl--da~kfS~yF~~a~i~ 220 (674)
T KOG0922 144 KYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMSATL--DAEKFSEYFNNAPIL 220 (674)
T ss_pred EEECCHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEEEE--CHHHHHHHHCCCCEE
T ss_conf 99613599998850876454448998322310157889999999987327-783699992352--489999986479567
Q ss_pred CCCC------EEEEECCCCCCCCHHHHH
Q ss_conf 8440------776411576633036777
Q gi|254780711|r 241 DLTG------IILTRMDGDGRGGAALSM 262 (461)
Q Consensus 241 ~i~g------iIlTKlD~~akgG~als~ 262 (461)
.+-| +..||-..+.--.+++-.
T Consensus 221 ~i~GR~fPVei~y~~~p~~dYv~a~~~t 248 (674)
T KOG0922 221 TIPGRTFPVEILYLKEPTADYVDAALIT 248 (674)
T ss_pred EECCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 6668877556886368850467899999
No 114
>CHL00175 minD septum-site determining protein; Validated
Probab=97.63 E-value=0.00029 Score=52.74 Aligned_cols=152 Identities=18% Similarity=0.272 Sum_probs=79.6
Q ss_pred CCCCCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH--------------HHHHHH---HHH-
Q ss_conf 00025884189962-34433346889999999986148950782054221004--------------779999---851-
Q gi|254780711|r 93 LDLNAPSPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA--------------QEQLRY---LGE- 153 (461)
Q Consensus 93 l~~~~~~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA--------------~eQL~~---~a~- 153 (461)
.+.-++--.||.++ |==|+||||+++-||..+.. .|+||+++-+|.+-+.. .+-+.. +.+
T Consensus 6 ~~~~~~m~kiIaV~s~KGGVGKTT~a~NLa~aLA~-~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~ 84 (279)
T CHL00175 6 MTIVATMTRIIVITSGKGGVGKTTTTANLGMSIAR-LGYRVALIDADIGLRNLDLLLGLENRVVYTAMEVLEGECRLDQA 84 (279)
T ss_pred CHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 31225988699997489984489999999999997-89988999578999987532686666667476640787664301
Q ss_pred ------CCCCCCCCCCCCCHHHHHHHH----HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf ------034742223321036899999----9999974158869983344222112468999999851385110003101
Q gi|254780711|r 154 ------QIQVDTLEVIPEQSPEKIAIR----ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 154 ------~~~v~~~~~~~~~dp~~i~~~----a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
.-++.+........-..+..+ -++....++||+|||||+.-+ +...+.-| ...+++++|.-.
T Consensus 85 ~i~~~~~~~l~ll~~~~~~~~~~~~~~~~~~ll~~l~~~~yDyiiID~ppgl--~~~~~~al------~aad~viIvttp 156 (279)
T CHL00175 85 LIRDKRWPNLSLLPISKNRQRYNVTRKNMNMLVDSLKERNYDYILIDCPAGI--DVGFINAI------APAKEAIVVTTP 156 (279)
T ss_pred EEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC--CHHHHHHH------HHCCEEEEECCC
T ss_conf 3425777877999789705445741999999999997279999998189988--89999999------978906997899
Q ss_pred HC--CHHHHHHHHHHHH-HCCCCCEEEEECCCC
Q ss_conf 11--2256888898876-358440776411576
Q gi|254780711|r 224 LT--GQDAVHLARNFDK-IVDLTGIILTRMDGD 253 (461)
Q Consensus 224 ~~--Gq~a~~~a~~F~~-~~~i~giIlTKlD~~ 253 (461)
-. =.++....+.|+. .+..-++|+.+....
T Consensus 157 e~~al~da~~~i~~~~~~~~~~~~lvvN~~~~~ 189 (279)
T CHL00175 157 EITAIRDADRVAGLLEANGIYNIKLLVNRVRPD 189 (279)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 789999999999999975998621353356455
No 115
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.011 Score=40.80 Aligned_cols=216 Identities=17% Similarity=0.185 Sum_probs=97.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEE-----EECCCCCCCHHHHHHHHHHHCCCCCCCCCC----CCCH
Q ss_conf 88418996234433346889999999986148-9507-----820542210047799998510347422233----2103
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKIL-----MASLDVHRPAAQEQLRYLGEQIQVDTLEVI----PEQS 167 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~-----lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~----~~~d 167 (461)
+-.+-+||.|+.|+||||++-=||+-+--.+. ..-+ +-.|+. -+...+--.++++... .+-|
T Consensus 36 r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~--------C~~i~~g~~~d~~EiDaas~~~v~ 107 (721)
T PRK12323 36 RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRA--------CTEIDAGRFVDYIEMDAASNRGVD 107 (721)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH--------HHHHHCCCCCCEEEEECCCCCCHH
T ss_conf 975447502799888989999999997689986678987887877654--------687756898764774367678889
Q ss_pred HHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-H----HHHHHHHHHH----
Q ss_conf 6899999999997-4158869983344222112468999999851385110003101112-2----5688889887----
Q gi|254780711|r 168 PEKIAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-Q----DAVHLARNFD---- 237 (461)
Q Consensus 168 p~~i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q----~a~~~a~~F~---- 237 (461)
-+.-..+.+.|+- ...|-|-|||-.-.+... -+.-|-+..+.- |.++.|++ |+|- | ..+..+..|+
T Consensus 108 ~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~--afnalLKtlEeP-P~hv~Fil-aTT~~~Kip~TilSRc~~f~~~~~ 183 (721)
T PRK12323 108 EMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNH--AFNAMLKTLEEP-PPHVKFIL-ATTDPQKIPVTVLSRCLQFNLKQM 183 (721)
T ss_pred HHHHHHHHCCCCCCCCCEEEEEEECCCCCCHH--HHHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCC
T ss_conf 99999985455887664469998540005899--999999840179-75538999-438634485889877654234789
Q ss_pred ---------------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf ---------------6358440----776411576633036777888478730261586723210013688998773586
Q gi|254780711|r 238 ---------------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMG 298 (461)
Q Consensus 238 ---------------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmg 298 (461)
+.+.++. +|--.-||+-| -+||+.. --|.| |.|. +. +.-+..+||.-
T Consensus 184 ~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~R--Dalslld---Qaia~-~~g~-~~-------~~~v~~mlg~~ 249 (721)
T PRK12323 184 PPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMR--DALSLTD---QAIAY-SAGN-VS-------EEAVRGMLGAI 249 (721)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHH---HHHHH-CCCC-CC-------HHHHHHHHCCC
T ss_conf 9999999999999983997799999999997589647--6888999---99986-5896-26-------99999986888
Q ss_pred CHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 2788999874211267899--8886531046379999999999
Q gi|254780711|r 299 DVVSLVEKAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQFRQ 339 (461)
Q Consensus 299 D~~~l~e~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql~~ 339 (461)
|-..+++-++...+.+... ...+.+.....+|..++.++-.
T Consensus 250 d~~~~~~ll~al~~~d~~~~~~~~~~~~~~~~d~~~~l~~l~~ 292 (721)
T PRK12323 250 DQRYLVRLLDALAAEDGAAVLAIADEMADRSLSFAGALQDLAS 292 (721)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7789999999999558999999999999868899999999999
No 116
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=97.61 E-value=0.00025 Score=53.17 Aligned_cols=215 Identities=22% Similarity=0.255 Sum_probs=99.7
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 623443334688999999998614--895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 105 LVGLQGSGKTTTTAKIAYHLKTLK--KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 105 lvGl~GsGKTTT~aKLA~~~~~~~--~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
|-|==||||||..|=.|-|+.. . |+||+|||||= |..+ -++|...-|.+|.+|. .-+
T Consensus 2 ~gGKGGVGKTt~SaAtA~~lAe-~qPGkkvLl~STDP------------AHsL-~D~F~~e~G~~~~kv~-------g~e 60 (330)
T TIGR00345 2 FGGKGGVGKTTISAATAIRLAE-QQPGKKVLLVSTDP------------AHSL-SDVFEQELGHEPTKVK-------GVE 60 (330)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-HCCCCEEEEEEECC------------CHHH-HHHHHHHHCCCCCEEE-------CCC
T ss_conf 7787882388899999999985-18997799984086------------0027-8861132177730320-------589
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--HH
Q ss_conf 5886998334422211246899999-98513851100031011122568888988763584407764115766330--36
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISE-IKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGG--AA 259 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~-i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG--~a 259 (461)
|--++=||-.- -|+|.+. +.++..+..--+-++ .|..--+|++.-.- .+++|-| .| -+
T Consensus 61 NL~~~EIDp~~-------al~~y~~rvf~~~~~i~~~~~~~--~~~~l~~ql~~~~~-~dltGsi---------PGiDE~ 121 (330)
T TIGR00345 61 NLSAVEIDPQA-------ALEEYRARVFKLKEQIKQNLSLG--VVDMLEDQLEGAAL-SDLTGSI---------PGIDEI 121 (330)
T ss_pred CCEEEEECHHH-------HHHHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHHH-HHHCCCC---------CCHHHH
T ss_conf 85555103789-------99987999999999986067887--32027999998777-7522799---------858899
Q ss_pred HHHHHHHCCCHHH--EECCCCCCCCCCCC--HHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 7778884787302--61586723210013--6889987735862788-99987421126789988865310463799999
Q gi|254780711|r 260 LSMRTVTGKPIKA--IGTGEKINDLENFF--PDRIANRILGMGDVVS-LVEKAARNLNEKQAALTAKKIAKGKFDLEDLA 334 (461)
Q Consensus 260 ls~~~~~~~PI~f--ig~GE~~~dle~F~--p~~~~~riLGmgD~~~-l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~ 334 (461)
++....++ -+.. .++||.+ |.=+|| |..-.=|+|.+..+.+ ++++.
T Consensus 122 ~~F~~~~k-~~~~~~~~e~ety-D~vIfDTAPTGHTLRLL~lP~~~~~~~~~~--------------------------- 172 (330)
T TIGR00345 122 AAFDEFLK-HMDEAELNERETY-DVVIFDTAPTGHTLRLLQLPEVLSKFLEKF--------------------------- 172 (330)
T ss_pred HHHHHHHH-HHHHHHCCCCCCC-CEEEEECCCCHHHHHHHCCHHHHHHHHHHH---------------------------
T ss_conf 99999998-7654321567623-468871697467775310023679999874---------------------------
Q ss_pred HHHHHHHCCCCHHHHH-HHHHCCCCCH--HHHHHCCCCHHHHHHHHHHHHCCCHHHHCC
Q ss_conf 9999985114889999-9873134423--432311167888889999974589878608
Q gi|254780711|r 335 EQFRQTQKIGGIGSIL-RMLPGMPSLK--QNIMPSSFDDKTINHHIAIIASMTKEERAN 390 (461)
Q Consensus 335 ~Ql~~i~kmG~l~~il-~miPG~~~~~--~~~~~~~~~e~~lk~~~aII~SMT~~Er~~ 390 (461)
++--++||+|-+++ ..||=||.-. +...-.+.-+..=.+++++-+-||.-||-.
T Consensus 173 --~k~~~~~g~~~~~~~~~Lpf~G~~~~l~~~~~l~~~~e~Ke~~~~~~~~l~DP~~T~ 229 (330)
T TIGR00345 173 --IKLREKLGPMLKLFKELLPFMGAGESLEDDEALEKLEELKEQIEAAREVLSDPERTS 229 (330)
T ss_pred --HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf --356777889887664105789898878778999989999999999999724998516
No 117
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.61 E-value=0.0047 Score=43.55 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=103.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH--HCCCCEEEECCCC-CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 996234433346889999999986--1489507820542-2100477999985103474222332103689999999999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKT--LKKKKILMASLDV-HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~--~~~~kV~lv~~Dt-~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
|.++|--|+||||.+-.|.+.-.. +.|+ |- ...| -..-..|+-+...-...+ -++
T Consensus 2 iai~gH~~~GKTtL~e~lL~~~g~i~r~G~-v~--~g~t~~D~~~eE~~r~isi~~~~-------------------~~~ 59 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGS-VD--KGTTRTDTMELERQRGITIFSAV-------------------ASF 59 (237)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCHHHHCCC-EE--CCCCCCCCHHHHHHHCCEEEEEE-------------------EEE
T ss_conf 899938998999999999996571222663-30--68303785499898487031058-------------------999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHHHHHHCCCCCEEEEECCC-C
Q ss_conf 741588699833442221124689999998513851100031011122-----5688889887635844077641157-6
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARNFDKIVDLTGIILTRMDG-D 253 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~F~~~~~i~giIlTKlD~-~ 253 (461)
.-+++.+-||||+|- .+-..|...-.+++ |-.++|+||..|- ....+++.++ +|. =+.++|||- .
T Consensus 60 ~~~~~~~n~iDtPG~----~dF~~e~~~al~~~--D~av~Vv~a~~Gv~~~t~~~~~~~~~~~--~P~-iifiNKmDre~ 130 (237)
T cd04168 60 QWEDTKVNLIDTPGH----MDFIAEVERSLSVL--DGAILVISAVEGVQAQTRILWRLLRKLN--IPT-IIFVNKIDRAG 130 (237)
T ss_pred EECCEEEEEEECCCC----HHHHHHHHHHHHHC--CCEEEEEECCCCCCCCHHHHHHHHHHCC--CCE-EEEEECCCCCC
T ss_conf 989987999889884----65666898897634--8169999658882234499999999859--985-99862445789
Q ss_pred CCCCHHH-HHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 6330367-778884787302615867232100136889987735862788999874211267899888653104637999
Q gi|254780711|r 254 GRGGAAL-SMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTAKKIAKGKFDLED 332 (461)
Q Consensus 254 akgG~al-s~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~D 332 (461)
+..-..| ++....+..+..+.......... +..... ..|+|.+-+ .....+++-+..+.++-++
T Consensus 131 adf~~~l~~i~~~l~~~~~p~~~p~~~~~~~--~~~~~~---------~~liE~vae----~DD~LlEkyLe~~elt~ee 195 (237)
T cd04168 131 ADLEKVYQEIKEKLSSDIVPMQKVGLAPNIC--ETNEID---------DEFWETLAE----GDDELLEKYLEGGPIEELE 195 (237)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCCCC--CCCCCC---------HHHHHHHHC----CCHHHHHHHHCCCCCCHHH
T ss_conf 9999999999999789747677775556644--454410---------889998764----6999999885789867889
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999985114
Q gi|254780711|r 333 LAEQFRQTQKIG 344 (461)
Q Consensus 333 f~~Ql~~i~kmG 344 (461)
+...++.--.-|
T Consensus 196 l~~~L~~~~~~g 207 (237)
T cd04168 196 LDNELSARIAKR 207 (237)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999749
No 118
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.61 E-value=0.0008 Score=49.37 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=63.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC-------------CC-C
Q ss_conf 841899623443334688999999998614895078205422100477999985103474222-------------33-2
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLE-------------VI-P 164 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~-------------~~-~ 164 (461)
+.+++++.|..|+||||.+...+..-.++.|.+++.|+.+-- .+||..+++..+.++-. .. .
T Consensus 23 ~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~----~~~l~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~ 98 (501)
T PRK09302 23 KGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEES----PEDIIRNVASFGWDLQKLIDEGKLFILDASPDPS 98 (501)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCC
T ss_conf 997799983899999999999999998855997899985799----9999999998499868973268389996156743
Q ss_pred ------CCHHHHHHHHHHHHHHHCCCCEEEEECCC--CC--CCHHHHHHHHHHHHHHCC
Q ss_conf ------10368999999999974158869983344--22--211246899999985138
Q gi|254780711|r 165 ------EQSPEKIAIRATQSARDGGYDAVILDTAG--RN--HINDSLMQEISEIKSLTN 213 (461)
Q Consensus 165 ------~~dp~~i~~~a~~~a~~~~~D~iiiDTaG--R~--~~d~~lm~El~~i~~~~~ 213 (461)
.-|...+...-.+.....+.+.|+||.-- |. ......-.++..+....+
T Consensus 99 ~~~~~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~~~~~~~~~~R~~l~~L~~~l~ 157 (501)
T PRK09302 99 EQEEAGEYDLSALIERIEYAIRKIKAKRVVIDSIEALFQQYDNPAVVRRELFRLFAWLK 157 (501)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 11133447689999999999997199999999978998763587899999999999998
No 119
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.61 E-value=0.00065 Score=50.05 Aligned_cols=117 Identities=25% Similarity=0.298 Sum_probs=58.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 899623443334688999999998614895-0782054221004779999851034742223321036899999999997
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
-+|++|+.||||||.+.- -|-+ ++ +|.+... .++-.+.--++++|-.
T Consensus 113 WYlviG~~gsGKTt~l~~--------Sgl~fPl---~~~~~~~---~~~g~ggt~~cdwwft------------------ 160 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQN--------SGLKFPL---AERLGAA---ALRGVGGTRNCDWWFT------------------ 160 (1169)
T ss_pred EEEEECCCCCCHHHHHHH--------CCCCCCC---CCCCCHH---HCCCCCCCCCCCEEEE------------------
T ss_conf 589978999866899983--------7998877---4100112---2158899855571652------------------
Q ss_pred HCCCCEEEEECCCCCCCHHH-----------HHHHHHHHHHHCCC-CCCCCCCCH--HCCHH---HHHH-------HHHH
Q ss_conf 41588699833442221124-----------68999999851385-110003101--11225---6888-------8988
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDS-----------LMQEISEIKSLTNP-HEILLVADA--LTGQD---AVHL-------ARNF 236 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~-----------lm~El~~i~~~~~p-~e~~lV~da--~~Gq~---a~~~-------a~~F 236 (461)
-+-|+||||||....+. .+.-|++...- +| +-++|++|. ..+++ -... ..+.
T Consensus 161 ---~~AVliDtaGry~~Q~~~~~~d~~~W~~fL~lLkk~R~r-~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El 236 (1169)
T TIGR03348 161 ---DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRR-QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQEL 236 (1169)
T ss_pred ---CCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf ---787999479760268886400189999999999864898-9987689997899974789999999999999999999
Q ss_pred HHHCCCC---CEEEEECCCCC
Q ss_conf 7635844---07764115766
Q gi|254780711|r 237 DKIVDLT---GIILTRMDGDG 254 (461)
Q Consensus 237 ~~~~~i~---giIlTKlD~~a 254 (461)
++.+++. -|++||+|-=+
T Consensus 237 ~~~lg~~~PVYv~~TK~Dll~ 257 (1169)
T TIGR03348 237 REQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHCCCCCEEEEEECHHHHH
T ss_conf 998299877599866401230
No 120
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.60 E-value=0.00017 Score=54.60 Aligned_cols=134 Identities=22% Similarity=0.341 Sum_probs=104.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC----------CCCCCCCCHHHH
Q ss_conf 1899623443334688999999998614895078205422100477999985103474----------222332103689
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD----------TLEVIPEQSPEK 170 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~----------~~~~~~~~dp~~ 170 (461)
.||.+.|=+||||||=+=|+|.-|= .|.+=++.-|-=.|.||--=-.-.|+.++-| |--....+.-++
T Consensus 85 QVviiAGETGSGKTTQLPKICLELG--rG~~GlIGHTQPRRlAAR~VA~R~AeELgtplGe~VGYkVRF~D~v~~~t~VK 162 (1320)
T TIGR01967 85 QVVIIAGETGSGKTTQLPKICLELG--RGSRGLIGHTQPRRLAARSVAERVAEELGTPLGELVGYKVRFEDQVSSNTLVK 162 (1320)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEE
T ss_conf 9899972448762023216777542--78765412471468899999999999838898861320366314268854363
Q ss_pred HHHHHHHHHH------HCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf 9999999997------41588699833442221124-689999998513851100031011122568888988763
Q gi|254780711|r 171 IAIRATQSAR------DGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI 239 (461)
Q Consensus 171 i~~~a~~~a~------~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~ 239 (461)
+.-||+=-|. .+.||.||||=|===..|-+ |+.-|+.|-.- .||..+.+-+||+ |.-.=++.|+++
T Consensus 163 LmTDGiLLAE~Q~DRfL~~YDTIIIDEAHERSLNIDFLLGYLK~lL~r-RPDLKiIITSATI--D~ERFs~HFn~A 235 (1320)
T TIGR01967 163 LMTDGILLAETQQDRFLERYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATI--DPERFSRHFNNA 235 (1320)
T ss_pred EHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCC-CCCCCEEEECCCC--CHHHHHHHHCCC
T ss_conf 032235899852002221067336511231123388999888763266-8865257400235--744687862278
No 121
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.56 E-value=0.0033 Score=44.68 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=71.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH-HHHH--HHHHHH
Q ss_conf 1899623443334688999999998614895078205422100477999985103474222332103-6899--999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQS-PEKI--AIRATQ 177 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~d-p~~i--~~~a~~ 177 (461)
..+++.|..|+||||.+.-+|..+..+.|.+|++++..--.- ---.+.++...++|+.....+.. +... ..+++.
T Consensus 14 ~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~~~--~~~~R~~s~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 91 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKE--QLLQRLLASESGISLSKLRTGSLSDEDWERLAEAIG 91 (242)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 189999689999999999999999997799599993335388--999999999829774553026522799999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9974158869983344222112468999999851385110003101
Q gi|254780711|r 178 SARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
.. .+..+.+.|+++.. -+++...++.+....+|+ ++|+|-
T Consensus 92 ~~--~~~~l~i~d~~~~t--~~~i~~~ir~~~~~~~~~--~vvvDy 131 (242)
T cd00984 92 EL--KELPIYIDDSSSLT--VSDIRSRARRLKKEHGLG--LIVIDY 131 (242)
T ss_pred HH--CCCCEEEECCCCCC--HHHHHHHHHHHHHHCCCC--EEEEEH
T ss_conf 86--16988996699999--999999999998836998--999826
No 122
>KOG0925 consensus
Probab=97.55 E-value=0.00046 Score=51.25 Aligned_cols=131 Identities=25% Similarity=0.324 Sum_probs=90.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CCC--CCCCHHHHH--
Q ss_conf 18996234433346889999999986148950782054221004779999851034742-----223--321036899--
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LEV--IPEQSPEKI-- 171 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~~--~~~~dp~~i-- 171 (461)
.+|.+||-+||||||-+-..+..+..... -+++|+...|.||+.--+-.|+.++|.. |+. +....|-.+
T Consensus 63 Q~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lk 140 (699)
T KOG0925 63 QIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLK 140 (699)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHC--CCEEECCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHHHH
T ss_conf 26999934888864547499999987633--6613247157889999998888744310201153212123687158999
Q ss_pred -HHHH------HHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf -9999------9999741588699833442221-1246899999985138511000310111225688889887635
Q gi|254780711|r 172 -AIRA------TQSARDGGYDAVILDTAGRNHI-NDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240 (461)
Q Consensus 172 -~~~a------~~~a~~~~~D~iiiDTaGR~~~-d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~ 240 (461)
+.++ +..--...|.+||.|-|---.. -+-||.=|+++...- ||..+.|+.|+. -|..|..+.
T Consensus 141 y~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl------~a~Kfq~yf 210 (699)
T KOG0925 141 YCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATL------DAEKFQRYF 210 (699)
T ss_pred HHCCHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCC------CHHHHHHHC
T ss_conf 9533289998750855453007995316666678999999999998619-881699940601------259999870
No 123
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.55 E-value=0.0054 Score=43.05 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=54.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCHHHHHH
Q ss_conf 58841899623443334688999999998614--895078205422100477999985103474222332--10368999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLK--KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIP--EQSPEKIA 172 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~--~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~--~~dp~~i~ 172 (461)
..-|+ ++|.||.|+||||++--+|+.+--.. ..-.-+-++|.+..+.. .+... .-.++++.... +..-..+.
T Consensus 34 ~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~-~i~~~--~~~~~~~~~~~~~~~~~~d~i 109 (337)
T PRK12402 34 GNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKK-YLVED--PRFAHFYDDPKRKYKSVIDNF 109 (337)
T ss_pred CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCC-EEECC--CCHHHHHCCHHHCCCCHHHHH
T ss_conf 99876-988892984899999999999679975678333116531135640-01016--642344201533277378999
Q ss_pred HHHHHHHH-----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999997-----4158869983344222112468999999851
Q gi|254780711|r 173 IRATQSAR-----DGGYDAVILDTAGRNHINDSLMQEISEIKSL 211 (461)
Q Consensus 173 ~~a~~~a~-----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~ 211 (461)
++.+.... ...|-+||+|-|.++..+.. .-|.++.+.
T Consensus 110 ~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq--~aLlk~lEe 151 (337)
T PRK12402 110 KHILKEYASMRPLSADYKLILFDNAEALREDAQ--QALRRIMER 151 (337)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHH--HHHHHHHHC
T ss_conf 999999861488778804999707131799999--999988740
No 124
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54 E-value=0.00071 Score=49.79 Aligned_cols=79 Identities=18% Similarity=0.102 Sum_probs=49.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
.|.-++++|+.|+||||.+.-+|+.+.. .+..+..+.+................ ........
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 79 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFR-PGAPFLYLNASDLLEGLVVAELFGHF-----------------LVRLLFEL 79 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEEEHHHCCHHHHHHHHHHHH-----------------HHHHHHHH
T ss_conf 9980899899998865999999997121-37982785477704677775760577-----------------88989999
Q ss_pred HHHCCCCEEEEECCCCC
Q ss_conf 97415886998334422
Q gi|254780711|r 179 ARDGGYDAVILDTAGRN 195 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~ 195 (461)
.......+++||-..++
T Consensus 80 ~~~~~~~vl~iDEi~~l 96 (151)
T cd00009 80 AEKAKPGVLFIDEIDSL 96 (151)
T ss_pred HHHCCCCEEEEECHHHC
T ss_conf 99769986982016655
No 125
>KOG2878 consensus
Probab=97.54 E-value=0.00065 Score=50.06 Aligned_cols=80 Identities=24% Similarity=0.196 Sum_probs=55.0
Q ss_pred HHHHHHHHHCCCCCC-CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 999999871877421-00025884189962344333468899999999861--489507820542210047799998510
Q gi|254780711|r 78 VHDELVEVLGKESIE-LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTL--KKKKILMASLDVHRPAAQEQLRYLGEQ 154 (461)
Q Consensus 78 v~~eL~~lLg~~~~~-l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~--~~~kV~lv~~Dt~R~aA~eQL~~~a~~ 154 (461)
+-+...+.|..-... ++-...-|.+|-|-|||||||||++.-|-+++.++ +.++++-++.|.|---+-+|++.--+.
T Consensus 8 ~id~~~~fl~kyiP~~f~~G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~n 87 (282)
T KOG2878 8 TIDQKARFLHKYIPVFFKDGDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKN 87 (282)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCEEEECHHHHHHHHHC
T ss_conf 37889988886375325678867679993378888830431456789999853644148997210366025578887509
Q ss_pred CCC
Q ss_conf 347
Q gi|254780711|r 155 IQV 157 (461)
Q Consensus 155 ~~v 157 (461)
-|-
T Consensus 88 pnN 90 (282)
T KOG2878 88 PNN 90 (282)
T ss_pred CCC
T ss_conf 998
No 126
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.54 E-value=0.00056 Score=50.55 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=69.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
-.||+.|++|||||||.|-+-.|+-+...+.++-+- |- +|=+-. .-..-+-.-+-+.|-.+. .+|+..|-
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIE-DP-----IE~vh~---skkslI~QREvG~dT~sF-~~aLraAL 195 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIE-DP-----IEYVHE---SKKSLINQREVGRDTLSF-ANALRAAL 195 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEC-CC-----HHHHHC---CHHHHHHHHHHCCCHHHH-HHHHHHHH
T ss_conf 669986799996787999999998414775168723-74-----686504---327666687745427889-99999986
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCHHCCHHHHHHHHHHHHHCC
Q ss_conf 4158869983344222112468999999851385110-003101112256888898876358
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEI-LLVADALTGQDAVHLARNFDKIVD 241 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~-~lV~da~~Gq~a~~~a~~F~~~~~ 241 (461)
.+.-|||+|-- |..++.|.-++...|+ +||+.-.--++|+..+..+-+.++
T Consensus 196 ReDPDVIlvGE----------mRD~ETi~~ALtAAETGHLV~~TLHT~sA~~ti~RiidvFp 247 (353)
T COG2805 196 REDPDVILVGE----------MRDLETIRLALTAAETGHLVFGTLHTNSAAKTIDRIIDVFP 247 (353)
T ss_pred HCCCCEEEEEC----------CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 02999799821----------34699999999898608877774023637777779887388
No 127
>PRK09401 reverse gyrase; Reviewed
Probab=97.53 E-value=0.00054 Score=50.70 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=64.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 996234433346889999999986148950782054221004779999851034742223-3210368999999999974
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV-IPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~-~~~~dp~~i~~~a~~~a~~ 181 (461)
..++-|+|+||||+-.=+|.|+.+++++...++.+-+-=.-+++-|+.+++..++++--. +.+.-+.+--.+..+..+.
T Consensus 96 FaiiAPTG~GKTtfgl~~sly~a~kgkks~~i~PT~~Lv~Q~~~kl~~~~~~~~~~~~~~~y~~~~~~~~kee~~~~~~~ 175 (1176)
T PRK09401 96 FAIIAPTGVGKTTFGLVMALYLAKKGKKSYIIFPTRLLVEQVVEKLRKLAEKVGVKVRLLYYHSSLKKKEKEEFLERLEE 175 (1176)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHC
T ss_conf 48988899888899999999998659839999688899999999999999970998408998567766678999988655
Q ss_pred CCCCEEEEECCCCCCCHHHH
Q ss_conf 15886998334422211246
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSL 201 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~l 201 (461)
..||+ +|-|+..++.+-++
T Consensus 176 gdfdI-litT~~fl~kn~~~ 194 (1176)
T PRK09401 176 GDFDI-LVTTSQFLSKNFDE 194 (1176)
T ss_pred CCCCE-EEEEHHHHHHHHHH
T ss_conf 99868-99856767654876
No 128
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.53 E-value=0.0011 Score=48.45 Aligned_cols=96 Identities=23% Similarity=0.285 Sum_probs=59.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8996234433346889999999986148950782054221004779999851---0347422233210368999999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE---QIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~---~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
+++++|..|+||||.+..+|..... .+.+|+.+++.--+.--.++...... ..+.-++......++........++
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~-~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9899989999899999999999876-399799998666448999999986224671307999359997699999999999
Q ss_pred HHH-CCCCEEEEECCCCCCCH
Q ss_conf 974-15886998334422211
Q gi|254780711|r 179 ARD-GGYDAVILDTAGRNHIN 198 (461)
Q Consensus 179 a~~-~~~D~iiiDTaGR~~~d 198 (461)
+.. ...++++||..=|+...
T Consensus 80 ~~~~~~~vliiiDSit~~~~a 100 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRA 100 (165)
T ss_pred HHHCCCCEEEEEECHHHHHHH
T ss_conf 998699779999288998877
No 129
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.52 E-value=0.00071 Score=49.79 Aligned_cols=147 Identities=19% Similarity=0.284 Sum_probs=74.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
|-.|.++|..-+||||-+-+|.. .++.+++ ++ ||. . .|+.. ..+
T Consensus 2 ~~~V~ivG~pN~GKSTL~N~l~g-------~~~~~vs-~~--pgt-------------T-------r~~~~------~~~ 45 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLG-------EERVIVS-DI--AGT-------------T-------RDSID------VPF 45 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC-------CCCEEEC-CC--CCC-------------E-------EECCE------EEE
T ss_conf 98999998999989999999838-------9844434-99--991-------------5-------73328------999
Q ss_pred HHCCCCEEEEECCCC---CCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHH--HHHHHHHHHH-CCCCCEEEEECC
Q ss_conf 741588699833442---221--12468999999851385110003101112256--8888988763-584407764115
Q gi|254780711|r 180 RDGGYDAVILDTAGR---NHI--NDSLMQEISEIKSLTNPHEILLVADALTGQDA--VHLARNFDKI-VDLTGIILTRMD 251 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR---~~~--d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a--~~~a~~F~~~-~~i~giIlTKlD 251 (461)
...+..+.++||+|= .+. +.+.+.-.+.+..+-+.|-+++|+||..+-.. ....+...+. .+ -=++++|.|
T Consensus 46 ~~~~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~~i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p-~iiv~NK~D 124 (174)
T cd01895 46 EYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWD 124 (174)
T ss_pred EECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECEE
T ss_conf 9999889998578842134421068899999999999842865899758989988999999999985998-699985675
Q ss_pred CCCCCCHHHHH-H--------HHHCCCHHHEE--CCCCCCCCC
Q ss_conf 76633036777-8--------88478730261--586723210
Q gi|254780711|r 252 GDGRGGAALSM-R--------TVTGKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 252 ~~akgG~als~-~--------~~~~~PI~fig--~GE~~~dle 283 (461)
--.+-...+.. . ...+.||.+++ +|+.+++|.
T Consensus 125 li~~~~~~~~~~~~~~~~~~~~~~~~~ii~iSA~~g~Gi~~L~ 167 (174)
T cd01895 125 LVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLF 167 (174)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 2676477899999999987341689928999744798999999
No 130
>PRK00784 cobyric acid synthase; Provisional
Probab=97.52 E-value=0.006 Score=42.73 Aligned_cols=175 Identities=18% Similarity=0.266 Sum_probs=110.4
Q ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEE-----------EECCCCCCCHHHHHHHHHHHCCCCCC----------
Q ss_conf 8996234-4333468899999999861489507-----------82054221004779999851034742----------
Q gi|254780711|r 102 VIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKIL-----------MASLDVHRPAAQEQLRYLGEQIQVDT---------- 159 (461)
Q Consensus 102 vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~-----------lv~~Dt~R~aA~eQL~~~a~~~~v~~---------- 159 (461)
.||+.|. -++||||-+|-||+.|++ .|.+|+ .|++|-.-.|-..=++.+|..+.-.+
T Consensus 5 ~lMv~GT~S~vGKS~l~aaLCRi~~~-~G~~VaPFKaQNMslNs~vt~dG~EigrAQ~~QA~Aag~~p~v~MNPILLKP~ 83 (492)
T PRK00784 5 ALMVQGTTSDAGKSTLVAGLCRILAR-RGLRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLLKPQ 83 (492)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCCCCHHHCCCCCEECCCCCEEHHHHHHHHHHCCCCCCCCCCCEEECCC
T ss_conf 05888678887799999999999995-89855785702246651788999833699999999869999767688776318
Q ss_pred ---------------------CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-HHHH--HHHCCCC
Q ss_conf ---------------------223321036899999999997415886998334422211246899-9999--8513851
Q gi|254780711|r 160 ---------------------LEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQE-ISEI--KSLTNPH 215 (461)
Q Consensus 160 ---------------------~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~E-l~~i--~~~~~p~ 215 (461)
|.. .-.....++.++++.... .||+|++.-|| ++-+-||++. +..+ .+.++ .
T Consensus 84 gd~~SQVIv~Gk~~g~~~a~~Y~~-~~~~~~~~v~~a~~~L~~-~~d~iV~EGAG-SpaEiNL~~~Di~Nm~~A~~~~-a 159 (492)
T PRK00784 84 SDTGSQVIVQGKVVGNMDARDYHD-YKPRLLEAVLESLDRLAA-EYDLVVVEGAG-SPAEINLRDRDIANMGFAEAAD-A 159 (492)
T ss_pred CCCCCEEEECCEECCCCCHHHHHH-HHHHHHHHHHHHHHHHHH-HCCEEEEECCC-CCCCCCCCHHHHHHHHHHHHCC-C
T ss_conf 998867999997875313999998-699999999999999886-58899993589-8200265220024289998659-9
Q ss_pred CCCCCCCHHCCHHHHHHHHHHH-----HHCCCCCEEEEECCCCCCC--CHHHHHHHHHCCCHHHEECCCCCCCCC
Q ss_conf 1000310111225688889887-----6358440776411576633--036777888478730261586723210
Q gi|254780711|r 216 EILLVADALTGQDAVHLARNFD-----KIVDLTGIILTRMDGDGRG--GAALSMRTVTGKPIKAIGTGEKINDLE 283 (461)
Q Consensus 216 e~~lV~da~~Gq~a~~~a~~F~-----~~~~i~giIlTKlD~~akg--G~als~~~~~~~PI~fig~GE~~~dle 283 (461)
-++||.|---|---...+-++. +.--+-|+|+.|+-||..- -+.=-+-..||+|+ +|+=-.+++|.
T Consensus 160 pviLV~DIdRGGvfAsl~GT~~lL~~~eR~li~G~IiNKFRGD~~ll~pG~~~le~~tg~Pv--lGviP~~~~l~ 232 (492)
T PRK00784 160 PVILVADIDRGGVFASLVGTLALLSPEERARVKGFVINKFRGDISLLEPGLDWLEELTGIPV--LGVLPYLDDLR 232 (492)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCHHHHHHEEEEEEEEECCCHHHHCCHHHHHHHHHCCCC--EEEECCCCCCC
T ss_conf 88999975676426877638875999887115899997645874663559999999868980--68614656799
No 131
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=97.51 E-value=0.0046 Score=43.59 Aligned_cols=174 Identities=16% Similarity=0.256 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 46969999999999999830311126998999999999999987187742100025884189962344333468899999
Q gi|254780711|r 42 DVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIA 121 (461)
Q Consensus 42 DV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA 121 (461)
|+++..+.++.++ +..-.+++.+.. .|-++||+.-. .-.|.=++|+.|||||+-|-.||
T Consensus 6 ~~~f~t~~~~~~~---r~~~~~isTg~~-----------~LD~lLgGGi~-------~g~ITEi~G~~gsGKTQlc~qla 64 (261)
T pfam08423 6 PMGFTTATELHQR---RSEVIRITTGSK-----------ELDKLLGGGIE-------TGSITEVFGEFRTGKTQLCHTLC 64 (261)
T ss_pred CCCCCCHHHHHHH---HCCCCEECCCCH-----------HHHHHHCCCCC-------CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 5787439999997---548735778987-----------89987379866-------77299998998887899999999
Q ss_pred HHHH---HHC--CCCEEEECCC-CCCCHHHHHHHHHHHCCC---------CCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 9998---614--8950782054-221004779999851034---------742223321036899999999997415886
Q gi|254780711|r 122 YHLK---TLK--KKKILMASLD-VHRPAAQEQLRYLGEQIQ---------VDTLEVIPEQSPEKIAIRATQSARDGGYDA 186 (461)
Q Consensus 122 ~~~~---~~~--~~kV~lv~~D-t~R~aA~eQL~~~a~~~~---------v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~ 186 (461)
--.+ ..+ +.+|+.|.+. +|+|-=+.|+ |+..+ +-++......+-..+....-.......+.+
T Consensus 65 v~~qlp~~~gg~~g~vvyIDTEg~f~~eRl~qi---a~~~~~~~~~~L~~I~v~r~~~~~~~~~~l~~~~~~~~~~~v~L 141 (261)
T pfam08423 65 VTCQLPLEMGGGEGKALYIDTEGTFRPERIVAI---AERFGLDPEEVLDNIAYARAYNTEHQMQLLLQAAAMMSESRFAL 141 (261)
T ss_pred HHHHCHHHHCCCCCEEEEEECCCCCCHHHHHHH---HHHHCCCHHHHHHHCEECCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 994070965699972899936888698999999---99829997898753314168998999999999999873178349
Q ss_pred EEEECCCCCCCHH-----HHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9983344222112-----468999999851385110003101112256888898876358440776411576
Q gi|254780711|r 187 VILDTAGRNHIND-----SLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGD 253 (461)
Q Consensus 187 iiiDTaGR~~~d~-----~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~ 253 (461)
|+||..--+...+ ++.+..+.+.+.. +.-...|+.|+-+|=++-=+.|+.|+.
T Consensus 142 vVvDSiaalfR~e~~g~~~l~~R~~~L~~~l--------------~~L~~lA~~~~~aVvvTNQV~~~~~~~ 199 (261)
T pfam08423 142 LIVDSATALYRTDFSGRGELAERQQHLAKFL--------------RSLQRLADEFGVAVVITNQVVAQVDGA 199 (261)
T ss_pred EEEECCCEEEEECCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHCCCEEEEEEEEEEECCCC
T ss_conf 9983240023330036752899999999999--------------999999998095899960479852886
No 132
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=97.49 E-value=0.00026 Score=53.09 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=30.9
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 89962-3443334688999999998614895078205422
Q gi|254780711|r 102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
||.++ +==|+|||||++-||+-+.. .|++|++|-+|..
T Consensus 3 iIai~s~KGGVGKTT~t~nLa~aLa~-~G~rVLlID~Dpq 41 (244)
T pfam06564 3 VLALQGVRGGVGTTSLTAALGWALQQ-LGESVLVIDASPD 41 (244)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC
T ss_conf 99996699986199999999999997-7995899968987
No 133
>PTZ00035 Rad51; Provisional
Probab=97.49 E-value=0.016 Score=39.52 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=63.5
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH---HHCC--CCEEEE-CCCCCCCHHHHHHHHHHHC
Q ss_conf 999871877421000258841899623443334688999999998---6148--950782-0542210047799998510
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLK---TLKK--KKILMA-SLDVHRPAAQEQLRYLGEQ 154 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~---~~~~--~kV~lv-~~Dt~R~aA~eQL~~~a~~ 154 (461)
+|-++||+.-. . -.+-=++|..|+|||.-|-.||--.+ ..+| -+|+.| +=.||||--+.|+ |++
T Consensus 118 ~LD~LLGGGie-----t--~sITEi~Ge~gsGKTQlChqLaV~~QLP~~~GG~~GkvvYIDTEgtFrpeRi~qI---A~~ 187 (350)
T PTZ00035 118 QLDRLLKGGIE-----T--GGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTFRPERIVAI---AKR 187 (350)
T ss_pred HHHHHHCCCEE-----C--CCEEEEEECCCCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCHHHHHHH---HHH
T ss_conf 88876278941-----3--8587897279897899999999990485777798862799968899878999999---987
Q ss_pred CC---------CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 34---------742223321036899999999997415886998334422
Q gi|254780711|r 155 IQ---------VDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN 195 (461)
Q Consensus 155 ~~---------v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~ 195 (461)
.+ |-++..+...+-..++..+...+...++-+||||.+--+
T Consensus 188 ~gld~~~vL~nI~~ara~n~ehq~~ll~~~~~~~~e~~vrLlIVDSital 237 (350)
T PTZ00035 188 YGLHPTDCLNNIAYAKAYNCDHQTELLIDASAMMADARFALLIVDSATAL 237 (350)
T ss_pred CCCCHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
T ss_conf 09997998533223220687889999999999851167589985445667
No 134
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.48 E-value=0.00084 Score=49.23 Aligned_cols=148 Identities=20% Similarity=0.278 Sum_probs=79.3
Q ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH---------HHHC--------CCCCCC
Q ss_conf 84189962-34433346889999999986148950782054221004779999---------8510--------347422
Q gi|254780711|r 99 SPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRY---------LGEQ--------IQVDTL 160 (461)
Q Consensus 99 ~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~---------~a~~--------~~v~~~ 160 (461)
..++|+.. |.-|+||+|+++-||.-+.. .|+||+++-||.|.|.--.-|.. ...+ .++...
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~-~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~l 134 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQ-LGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVL 134 (265)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEE
T ss_conf 66189997589987568999999999996-39938999674669863554089865565411378711432202665504
Q ss_pred CC----CCCCHHHHH-----HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHHHH
Q ss_conf 23----321036899-----9999999974158869983344222112468999999851385110003101-1122568
Q gi|254780711|r 161 EV----IPEQSPEKI-----AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA-LTGQDAV 230 (461)
Q Consensus 161 ~~----~~~~dp~~i-----~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~a~ 230 (461)
.. ...-+|... ..+=+..+....||+|||||+=-...- .+.-+... |+-+++|..- -+--..+
T Consensus 135 si~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~-----d~~i~~~~--~~g~viVt~p~~~~~~~v 207 (265)
T COG0489 135 SILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDA-----DATVLQRI--PDGVVIVTTPGKTALEDV 207 (265)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH-----HHHHHHHC--CCEEEEEECCCCCHHHHH
T ss_conf 78832889989467763389999999974568888999699986427-----77887513--885999966773559999
Q ss_pred HHHHHHHHH--CCCCCEEEEECCCCC
Q ss_conf 888988763--584407764115766
Q gi|254780711|r 231 HLARNFDKI--VDLTGIILTRMDGDG 254 (461)
Q Consensus 231 ~~a~~F~~~--~~i~giIlTKlD~~a 254 (461)
..+-.|-+. .++-|+|....+-..
T Consensus 208 ~ka~~~~~~~~~~vlGvv~Nm~~~~~ 233 (265)
T COG0489 208 KKAIDMLEKAGIPVLGVVENMSYFIC 233 (265)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 99999998749934799966866666
No 135
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.48 E-value=0.0022 Score=46.10 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=74.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
.|.++|...+||||-+-.|. +.++..++ + .|+-- .|+.. ++ ...
T Consensus 5 ~V~ivG~pN~GKSsL~N~L~-------~~~~a~vs-~--~~gtT--------------------r~~~~----~~--~~~ 48 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALV-------GQKISIVS-P--KPQTT--------------------RNRIR----GI--YTD 48 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH-------CCCEEEEC-C--CCCEE--------------------ECCCE----EE--EEE
T ss_conf 89999999999999999995-------89703323-8--89826--------------------34423----68--984
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHH-HHHHHH-CCCCCCCCCCCHHCCHH--HHHHHHHHHHHCCC-CCEEEEECCCCCCC
Q ss_conf 158869983344222112468999-999851-38511000310111225--68888988763584-40776411576633
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEI-SEIKSL-TNPHEILLVADALTGQD--AVHLARNFDKIVDL-TGIILTRMDGDGRG 256 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~-~~p~e~~lV~da~~Gq~--a~~~a~~F~~~~~i-~giIlTKlD~~akg 256 (461)
.++.++++||+|-.......-+.+ +...+. -+.|-+++|+|+.-+-. -....+...+ .+. -=++++|.|--..-
T Consensus 49 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~l~~~D~il~vvD~~~~~~~~d~~i~~~l~~-~~~~~iivlNK~Dl~~~~ 127 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKK-SKTPVILVLNKIDLVKDK 127 (168)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEECEEECCCH
T ss_conf 9978999958986651456778999999986513655899997898986677999999998-099859999788704787
Q ss_pred CHHHHHHHH-----HCCCHHHEE--CCCCCCCCC
Q ss_conf 036777888-----478730261--586723210
Q gi|254780711|r 257 GAALSMRTV-----TGKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 257 G~als~~~~-----~~~PI~fig--~GE~~~dle 283 (461)
......... -..|+.+|+ +|+.+++|.
T Consensus 128 ~~~~~~~~~~~~~~~~~~vi~iSA~~g~Gid~L~ 161 (168)
T cd04163 128 EDLLPLLEKLKELGPFAEIFPISALKGENVDELL 161 (168)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 7899999999961899968999777896999999
No 136
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.47 E-value=0.0006 Score=50.33 Aligned_cols=180 Identities=18% Similarity=0.152 Sum_probs=96.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHH
Q ss_conf 8996234433346889999999986148950782054221004779999851034742-------223321036899999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-------LEVIPEQSPEKIAIR 174 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-------~~~~~~~dp~~i~~~ 174 (461)
|.++.|-=||||||.+-.|.+. +.|+|++++=-+--- -.+|. ...-...+.++ +.+.-..|-+.....
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~---~~g~kiAVIVNEfGE-vgID~-~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~ 77 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLAN---RDGKKIAVIVNEFGE-VGIDG-GALLSDTGEEVVELTNGCICCTVRDDLLPALER 77 (323)
T ss_pred EEEEEECCCCCHHHHHHHHHHC---CCCCEEEEEEECCCC-CCCCC-CCCCCCCCCCEEEECCCCEEEECCCHHHHHHHH
T ss_conf 7998116779989999999854---589807999855740-22167-764134897579836970787034215899999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH---HHHHCCCCCCCCCCCHHCCHHHHH-HHHHHHHHCCC-CCEEEEE
Q ss_conf 999997415886998334422211246899999---985138511000310111225688-88988763584-4077641
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISE---IKSLTNPHEILLVADALTGQDAVH-LARNFDKIVDL-TGIILTR 249 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~---i~~~~~p~e~~lV~da~~Gq~a~~-~a~~F~~~~~i-~giIlTK 249 (461)
+.. ...+.|.|+|-|+|=-+ =...++.+.. +...+.-+-++-|+||...-.... +.+.|.+.+.. +-+++||
T Consensus 78 -L~~-~~~~~D~ivIEtTGlA~-P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK 154 (323)
T COG0523 78 -LLR-RRDRPDRLVIETTGLAD-PAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNK 154 (323)
T ss_pred -HHH-CCCCCCEEEEECCCCCC-CHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf -985-25689989996887778-699999860651224540413369998478865456779999999998679999836
Q ss_pred CCCCCCCC-HHHH-HHHH--HCCCHHHEECCCCC----CCCCCCCHHH
Q ss_conf 15766330-3677-7888--47873026158672----3210013688
Q gi|254780711|r 250 MDGDGRGG-AALS-MRTV--TGKPIKAIGTGEKI----NDLENFFPDR 289 (461)
Q Consensus 250 lD~~akgG-~als-~~~~--~~~PI~fig~GE~~----~dle~F~p~~ 289 (461)
.|--.... .++- .... -..+|.....|+.- =|.-.|++++
T Consensus 155 ~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~~~~~~~~ll~~~~~~~~~ 202 (323)
T COG0523 155 TDLVDAEELEALEARLRKLNPRARIIETSYGDVDLAELLDEGLFDLDR 202 (323)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCCC
T ss_conf 456898899999999997599986998123668778863665444444
No 137
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.47 E-value=0.0017 Score=46.87 Aligned_cols=145 Identities=19% Similarity=0.261 Sum_probs=84.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC----------CCCCCCC-------
Q ss_conf 18996234433346889999999986148950782054221004779999851034----------7422233-------
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ----------VDTLEVI------- 163 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~----------v~~~~~~------- 163 (461)
.++++.|..|+|||+.+..++..... .|.+|+.|++|--+.-=.++...++-... ++.+...
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~~~~~~ 102 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKGLVSIV 102 (260)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf 78999938998689999999997762-69858999920698999999988099778975444068763121112542010
Q ss_pred --CCCHHHHHHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHH--HHHHHHHHHCCCC--CCCCCCCHHCCHHHHH-HHH
Q ss_conf --210368999999999974158869983344--222112468--9999998513851--1000310111225688-889
Q gi|254780711|r 164 --PEQSPEKIAIRATQSARDGGYDAVILDTAG--RNHINDSLM--QEISEIKSLTNPH--EILLVADALTGQDAVH-LAR 234 (461)
Q Consensus 164 --~~~dp~~i~~~a~~~a~~~~~D~iiiDTaG--R~~~d~~lm--~El~~i~~~~~p~--e~~lV~da~~Gq~a~~-~a~ 234 (461)
...+...+...-.+.+...+.+.+++|... .+..+...+ .++..+.+..+.. ..+++.++..++.... ..+
T Consensus 103 ~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~~~~~~r~~~~~l~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 182 (260)
T COG0467 103 VGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLNDPALVRRILLLLKRFLKKLGVTSLLTTEAPVEERGESGVEE 182 (260)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEE
T ss_conf 46652289999999999986289889996630776652782578999999998765068489999744334666566142
Q ss_pred HHHHHCCCCCEEEEECC
Q ss_conf 88763584407764115
Q gi|254780711|r 235 NFDKIVDLTGIILTRMD 251 (461)
Q Consensus 235 ~F~~~~~i~giIlTKlD 251 (461)
.-++|+|-=...
T Consensus 183 -----~~vdgvI~l~~~ 194 (260)
T COG0467 183 -----YIVDGVIRLDLK 194 (260)
T ss_pred -----EEEEEEEEEEEE
T ss_conf -----168999999777
No 138
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.45 E-value=0.0012 Score=47.93 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=81.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-C-----CCCCCCCEEEEEEC
Q ss_conf 99999852469699999999999998303111269989999999999999871877421-0-----00258841899623
Q gi|254780711|r 34 IRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIE-L-----DLNAPSPLVIMLVG 107 (461)
Q Consensus 34 i~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~-l-----~~~~~~p~vIllvG 107 (461)
+.++|..+.+.++.+..+-..|++.+..+.. ..++ ++.+.+.||..|.+--+++... + -.....|.+|++-|
T Consensus 192 LarSltaaG~~P~~Ay~iA~eie~~L~~~~~-~~i~-~~elr~~v~~~L~~~~~~~~A~rY~lwR~ir~~~~PiiILIGG 269 (492)
T PRK12337 192 LVQSLLAAGVAPDVARKVARVTQRDLRGSGD-RVVR-RDEIREKVEALLRDEVGPDVSARYRLLRVLRKPPRPLHVLLGG 269 (492)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-EEEE-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 9999998058888999999999999986588-7970-9999999999998730388999999999973568876999607
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 4433346889999999986148950782054221004779999851034742
Q gi|254780711|r 108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT 159 (461)
Q Consensus 108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~ 159 (461)
..|+||+|-++-||+.+-- .+ ++++|+-| |=++.+-..--.|.
T Consensus 270 aSGvGKSTlAseLA~RLGI---~~--VIsTDsIR----EVMR~~is~el~P~ 312 (492)
T PRK12337 270 VSGTGKSVLAAELAYRLGI---TR--VVPTDAIR----EVMRAMVSKDLLPT 312 (492)
T ss_pred CCCCCHHHHHHHHHHHHCC---CC--CCCCHHHH----HHHHHHCCHHHCCH
T ss_conf 8886688899999996098---81--02544799----99998459764845
No 139
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.44 E-value=0.0042 Score=43.91 Aligned_cols=144 Identities=18% Similarity=0.148 Sum_probs=81.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHHHHHH
Q ss_conf 189962344333468899999999861489507820542210047799998510347422233210-3689999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRATQSA 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a~~~a 179 (461)
.++++.|..|+||||.+.-+|..+..+.|.+|++++.-.-.-- -..+.++...++++....... .+.+-...+++..
T Consensus 31 eL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~--~~~Rlls~~~g~~~~~~~~~~~~~~e~~~~~~~~~ 108 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVR--TARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEF 108 (271)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH--HHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 0899996899869999999999999976990899970499999--99999999829971103446778099999999997
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-----CH---H-------HHHHHHHHHHHCCCCC
Q ss_conf 7415886998334422211246899999985138511000310111-----22---5-------6888898876358440
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-----GQ---D-------AVHLARNFDKIVDLTG 244 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-----Gq---~-------a~~~a~~F~~~~~i~g 244 (461)
.... -+.+.|..|... -+.+.+.++.+....+++ ++|+|-.. ++ + .....+.|.+..++.-
T Consensus 109 ~~~~-~l~i~d~~~~~~-~~~i~~~ir~~~~~~~~~--~vvIDylqll~~~~~~~~d~~~~i~~i~~~Lk~lAke~~v~V 184 (271)
T cd01122 109 EGTG-RLFMYDSFGEYS-MDSVLEKVRYMAVSHGIQ--HIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHI 184 (271)
T ss_pred CCCC-CEEEECCCCCCC-HHHHHHHHHHHHHHCCCC--EEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 0799-808878999988-999999999999828998--899831785036786773189999999999999999979977
Q ss_pred EEEEEC
Q ss_conf 776411
Q gi|254780711|r 245 IILTRM 250 (461)
Q Consensus 245 iIlTKl 250 (461)
+.++-+
T Consensus 185 i~lsQl 190 (271)
T cd01122 185 TLVSHL 190 (271)
T ss_pred EEEECC
T ss_conf 999526
No 140
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44 E-value=0.018 Score=39.08 Aligned_cols=218 Identities=11% Similarity=0.104 Sum_probs=110.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC--EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHH
Q ss_conf 58841899623443334688999999998614895--07820542210047799998510347422233210-3689999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK--ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAI 173 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k--V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~ 173 (461)
..-|+.+||+|+.|+||||++-=||+.+--.+... --.-.|+.- +.+...-.++++.....+ .-++-++
T Consensus 36 ~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C--------~~I~~g~~~DViEiDaAs~~gVddIR 107 (462)
T PRK06305 36 NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAIC--------KEISSGTSLDVIEIDGASHRGIEDIR 107 (462)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH--------HHHHCCCCCCEEEECCCCCCCHHHHH
T ss_conf 9976234303899859999999999996799998888988766888--------99863899986864355344668999
Q ss_pred HHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHH----HHHHHH--------
Q ss_conf 999999----7415886998334422211246899999985138511000310111225688----889887--------
Q gi|254780711|r 174 RATQSA----RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVH----LARNFD-------- 237 (461)
Q Consensus 174 ~a~~~a----~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~----~a~~F~-------- 237 (461)
+-++.. ....|-|.|||-+-.++.+. ..-|-+..+.- |.+++|++-.+--+.... -.+.|+
T Consensus 108 el~e~v~~~P~~~~yKVyIIDEvhmLs~~A--fNALLKtLEEP-P~~v~FILaTTe~~KIp~TIlSRCQrf~F~~i~~~~ 184 (462)
T PRK06305 108 QINETVLFTPSKSQYKIYIIDEVHMLTKEA--FNSLLKTLEEP-PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEET 184 (462)
T ss_pred HHHHHHCCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHHHCC-CCCEEEEEEECCHHHCCHHHHHHHHEEECCCCCHHH
T ss_conf 999771008867750599981521179999--99999986189-877499998188142854787654023325799999
Q ss_pred -----------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf -----------635844----07764115766330367778884787302615867232100136889987735862788
Q gi|254780711|r 238 -----------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVS 302 (461)
Q Consensus 238 -----------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~ 302 (461)
+.+.++ -+|..+-||+-| -|||+-... |.|- +.+++ ..-+..+||.=|-..
T Consensus 185 I~~~L~~I~~~E~i~~e~~AL~lIA~~a~GsmR--DAlslLDQ~---i~~~--~~~it-------~~~V~~~lG~v~~~~ 250 (462)
T PRK06305 185 IIDKLALIAQQDGIETSREALLPIARAAQGSLR--DAESLYDYV---VGLF--PKSLS-------PDTVAKALGLLSQDS 250 (462)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHHH---HHHC--CCCCC-------HHHHHHHHCCCCHHH
T ss_conf 999999999983998599999999998589587--899999999---9847--99868-------999999868998899
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9998742112678--998886531046379999999999
Q gi|254780711|r 303 LVEKAARNLNEKQ--AALTAKKIAKGKFDLEDLAEQFRQ 339 (461)
Q Consensus 303 l~e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~Ql~~ 339 (461)
+.+-....++.+. +-+....+...-.+...|++++-.
T Consensus 251 l~~L~~ai~~~d~~~~l~~~~~i~~~G~d~~~~l~dL~~ 289 (462)
T PRK06305 251 LYTLAEAITTQNYAQALGPVTDALNSGVAPAHFLHDLTL 289 (462)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999998389999999999999849999999999999
No 141
>PRK06696 uridine kinase; Validated
Probab=97.41 E-value=0.0009 Score=48.99 Aligned_cols=51 Identities=29% Similarity=0.432 Sum_probs=41.8
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf 0258841899623443334688999999998614895078205422100477
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE 146 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e 146 (461)
..+++|.+|-+.|+.||||||.+.+||..+.. .|..|.++..|-|=-....
T Consensus 21 ~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~-~G~~V~~v~~Ddf~~~~~~ 71 (227)
T PRK06696 21 LNLTRPLRVAIDGITASGKTTFANELAEEIKK-RGRPVIRASIDDFHNPKVI 71 (227)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHH
T ss_conf 59998689997789987879999999999974-6994899715443473777
No 142
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.41 E-value=0.00043 Score=51.42 Aligned_cols=80 Identities=20% Similarity=0.164 Sum_probs=44.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
.|+++|++|||||||++-+..++-....+++.-+ -|. +|-+ +.. ...-+...+.+.|.... .+++..+..
T Consensus 3 liLitG~TGSGKTTtl~all~~i~~~~~~~IiTi-EDP-----iE~~--~~~-~~~~i~q~e~g~~~~sf-~~~lr~aLR 72 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI-EDP-----IEFV--HES-KRSLINQREVGLDTLSF-ENALKAALR 72 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE-CCC-----HHHH--CCC-CCEEEEECCCCCCCCCH-HHHHHHHHH
T ss_conf 8999899999799999999985363788369996-473-----7752--367-64488733307886379-999999985
Q ss_pred CCCCEEEEEC
Q ss_conf 1588699833
Q gi|254780711|r 182 GGYDAVILDT 191 (461)
Q Consensus 182 ~~~D~iiiDT 191 (461)
..-|+|+|.-
T Consensus 73 ~~PDvI~vGE 82 (198)
T cd01131 73 QDPDVILVGE 82 (198)
T ss_pred HCCCEEECCC
T ss_conf 4888575277
No 143
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.40 E-value=0.0011 Score=48.38 Aligned_cols=52 Identities=27% Similarity=0.292 Sum_probs=41.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT 159 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~ 159 (461)
.|+.|..|+||||.+..+++...+ .|.+|+.++++-- .+|+...+..+|.++
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~-~ge~~lyis~eE~----~~~l~~~~~~~g~d~ 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEES----PEELIENAESLGWDL 53 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCC----HHHHHHHHHHCCCCH
T ss_conf 158768999999999999999987-6997899995079----999999999839985
No 144
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.40 E-value=0.00026 Score=53.12 Aligned_cols=101 Identities=30% Similarity=0.396 Sum_probs=61.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
++++.||.|.|+.||||||-+-+|..+|.. .+.++.+.-.|..|- .+.. . -| +..|-...+++..
T Consensus 4 ~~kg~viW~TGLsGSGKTTiA~~l~~~L~~-~g~~~~~LDGD~lR~-------~~~~-~---gf---s~~~R~~n~~r~~ 68 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKL-KYSNVIYLDGDELRE-------IFGH-S---GY---DKESRIEMALKRA 68 (176)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHH-------HHCC-C---CC---CHHHHHHHHHHHH
T ss_conf 888679997899999899999999999997-599779988689998-------7365-8---98---9999999999999
Q ss_pred HHHH---HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CCCCCC
Q ss_conf 9997---4158869983344222112468999999851385--110003
Q gi|254780711|r 177 QSAR---DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNP--HEILLV 220 (461)
Q Consensus 177 ~~a~---~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p--~e~~lV 220 (461)
+.|+ +++ -+||+.+.. ...+.++..+..-+ .|+++=
T Consensus 69 ~lak~l~~~g-~~vIvs~is-------p~~~~R~~~R~~~~~~~EVyv~ 109 (176)
T PRK05541 69 KLAAFLADQG-MIVIVTTIS-------MFNEIYAYNRKHLPNYFEVYLK 109 (176)
T ss_pred HHHHHHHHCC-CCEEEEECC-------CCHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999986469-803675227-------9899999999748876899994
No 145
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.38 E-value=0.0021 Score=46.20 Aligned_cols=78 Identities=24% Similarity=0.294 Sum_probs=51.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-
Q ss_conf 8996234433346889999999986148950782054221004779999851034742223321036899999999997-
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR- 180 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~- 180 (461)
||-|.|+.||||||-+-+|..++.+ ++.++.++-.|..|.+ +...++ | ...|-...++.....|+
T Consensus 1 ViW~tGLsgsGKTTlA~~l~~~L~~-~~~~~~~lDGD~iR~~-------l~~~lg---y---s~~~R~~n~~r~~~lak~ 66 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ-RGRPVYVLDGDNVRHG-------LNKDLG---F---SREDREENIRRIAEVAKL 66 (149)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHHH-------HCCCCC---C---CHHHHHHHHHHHHHHHHH
T ss_conf 9898799999999999999999998-6997599774889977-------365559---8---878899999999999999
Q ss_pred -HCCCCEEEEECCC
Q ss_conf -4158869983344
Q gi|254780711|r 181 -DGGYDAVILDTAG 193 (461)
Q Consensus 181 -~~~~D~iiiDTaG 193 (461)
.+.-..||+.+..
T Consensus 67 l~~qg~~VIvs~is 80 (149)
T cd02027 67 LADAGLIVIAAFIS 80 (149)
T ss_pred HHHCCCEEEEECCC
T ss_conf 98379827884167
No 146
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.38 E-value=0.00092 Score=48.93 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=52.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC----CCCCCCCC--CC----HHHHHH
Q ss_conf 996234433346889999999986148950782054221004779999851034----74222332--10----368999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ----VDTLEVIP--EQ----SPEKIA 172 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~----v~~~~~~~--~~----dp~~i~ 172 (461)
|.++|=-|+||||.++-||.++.+ ++++|+++-+|-- +=-..++.... +.+..... ++ -+-.+.
T Consensus 2 ia~~GKGGvGKtt~~~~la~~l~~-~g~~vl~iD~Dp~-----dlpe~~~~~~~~~~~l~~lg~~~~~g~GC~C~~n~ll 75 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADPD-----DLPERLSVEVGEIKLLLVMGMGRPGGEGCYCPENALL 75 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC-----CCHHHHCEECCCCCEEEEEECCCCCCCCEECCHHHHH
T ss_conf 789889977499999999999997-8996999989897-----1235542331787079999734358994088257899
Q ss_pred HHHHHHHHHCCCCEEEEECCC
Q ss_conf 999999974158869983344
Q gi|254780711|r 173 IRATQSARDGGYDAVILDTAG 193 (461)
Q Consensus 173 ~~a~~~a~~~~~D~iiiDTaG 193 (461)
++-+++...+++|+|++||.-
T Consensus 76 ~~~l~~l~~~~~~~VvvD~eA 96 (116)
T cd02034 76 NALLRHLVLTRDEQVVVDTEA 96 (116)
T ss_pred HHHHHHHCCCCCCEEEEECCC
T ss_conf 999999706799899996785
No 147
>PRK05595 replicative DNA helicase; Provisional
Probab=97.36 E-value=0.022 Score=38.46 Aligned_cols=60 Identities=28% Similarity=0.346 Sum_probs=44.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCC
Q ss_conf 189962344333468899999999861489507820542210047799--9985103474222332
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIP 164 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~ 164 (461)
..|.+.|-.|.|||+.+--+|.+...+.|++|++.+..-- .+|| +.+|...+|+......
T Consensus 202 dLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEMs----~~ql~~R~ls~~s~i~~~~i~~ 263 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVVIFSLEMS----KEQLAYKLLCSEANVDMLRLRT 263 (444)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7799985798980799999999999866993799958899----9999999999646988442326
No 148
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.36 E-value=0.013 Score=40.03 Aligned_cols=170 Identities=20% Similarity=0.244 Sum_probs=96.1
Q ss_pred EEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEE--ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 996234-43334688999999998614895078--2054221004779999851034742223321-0368999999999
Q gi|254780711|r 103 IMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILM--ASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIAIRATQS 178 (461)
Q Consensus 103 IllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~l--v~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~~~a~~~ 178 (461)
|++.|+ -||||||-+.=|++.|+++ |.+|.- +.-|- +|. .-+....|.|++....- -.+.. ++...
T Consensus 4 ilIAa~~SgsGKTtvt~gL~~aL~~r-G~~Vq~FK~GPDY-----IDP-~~h~~a~G~~~~NLD~~m~~~~~-v~~~~-- 73 (432)
T PRK13896 4 VVLAGTSSGVGKTVATLAVLQALADA-GYDVQPAKAGPDF-----IDP-SHHEAVVDTPSRSLDPWLSGEDG-MRRTY-- 73 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCC-----CCH-HHHHHHHCCCCCCCCHHHCCHHH-HHHHH--
T ss_conf 89977899998999999999999978-4963766668475-----198-99999968984468910189899-99999--
Q ss_pred HHHCCCCEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCHH-CCHHHHHHHHHHHHH-------CCCCCEEEE
Q ss_conf 974158869983344222112--4689999998513851100031011-122568888988763-------584407764
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHIND--SLMQEISEIKSLTNPHEILLVADAL-TGQDAVHLARNFDKI-------VDLTGIILT 248 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~--~lm~El~~i~~~~~p~e~~lV~da~-~Gq~a~~~a~~F~~~-------~~i~giIlT 248 (461)
.....|+.||.-.=-+ .|. .=-.|+.++.+. -++||+|+. +.+.+..+++-|.+. +.|-|||+.
T Consensus 74 -~~~~aDiaviEGvMGL-yDG~~~Sta~lA~~l~~----PVvLVvd~~~~~~s~aA~v~G~~~f~~~~~~d~~iaGVIlN 147 (432)
T PRK13896 74 -WRGTGDVCVVEGMMGL-YDGTVASTAAVAEELDL----PVVLVVDAKAGMESVAATALGFQAYADRAGVDIDVAGVLAQ 147 (432)
T ss_pred -HHCCCCEEEEEECCCC-CCCCCCCHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf -7279986999612324-57887758999998499----98999933201888999999999724124765247668842
Q ss_pred ECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 1157663303677788847873026158672321001368899877358
Q gi|254780711|r 249 RMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM 297 (461)
Q Consensus 249 KlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm 297 (461)
++-+......+-.+... ++| .+|.=-+.+++. +-+|=||+
T Consensus 148 ~v~s~rh~~~l~~al~~-~i~--vlG~lPr~~~l~------lp~RHLGL 187 (432)
T PRK13896 148 RAHGGRHADGIRDALPD-ELT--YFGRVPPRSDLE------IPDRHLGL 187 (432)
T ss_pred CCCCHHHHHHHHHHHHC-CCC--EEEEECCCCCCC------CCCCCCCC
T ss_conf 67758899999999870-894--898842477789------84102598
No 149
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=97.35 E-value=0.0025 Score=45.60 Aligned_cols=163 Identities=16% Similarity=0.139 Sum_probs=87.2
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999998718774210002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r 77 IVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ 156 (461)
Q Consensus 77 iv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~ 156 (461)
-+.+.+.+.|..... .......|..|.+||=..+||.|-+ +.+.. +.+ + +|+ +
T Consensus 189 dLld~i~~~l~~~~~-~~~~~~~~~rIAIvGrPNvGKStL~----N~llg-~~r-~-ivs-------------------~ 241 (474)
T PRK03003 189 DLLDAVLAALPEVPE-VGSAVGGPRRVALVGKPNVGKSSLL----NKLAG-EER-S-VVH-------------------D 241 (474)
T ss_pred HHHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCHHHHH----HHHHC-CCC-E-EEC-------------------C
T ss_conf 999999974877664-4334577627999808998788999----99858-975-6-745-------------------8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---HH
Q ss_conf 742223321036899999999997415886998334422-----2112468999999851385110003101112---25
Q gi|254780711|r 157 VDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN-----HINDSLMQEISEIKSLTNPHEILLVADALTG---QD 228 (461)
Q Consensus 157 v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~-----~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q~ 228 (461)
+| ..-.|++++. +..++..++||||||-- ..+-+.+.-++.+..+-..|-++||+||+-| ||
T Consensus 242 ~~----GTTRDsI~~~------~~~~~~~~~liDTAGiRrk~kv~~~iE~~s~~rtl~aI~~advvilviDa~egit~QD 311 (474)
T PRK03003 242 VA----GTTVDPVDSL------IELGGKVWRFVDTAGLRRKVGQASGHEFYASLRTHAAIDAAEVAVVLIDASEPLTEQD 311 (474)
T ss_pred CC----CCCCCCEEEE------EEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHH
T ss_conf 99----8515440589------9999989999989876635533431458999999999873355799985465874999
Q ss_pred HHHHHHHHHHHCCC-CCEEEEECCCCCCCC-HHH------HHHHHHCCCHHHEECCCC
Q ss_conf 68888988763584-407764115766330-367------778884787302615867
Q gi|254780711|r 229 AVHLARNFDKIVDL-TGIILTRMDGDGRGG-AAL------SMRTVTGKPIKAIGTGEK 278 (461)
Q Consensus 229 a~~~a~~F~~~~~i-~giIlTKlD~~akgG-~al------s~~~~~~~PI~fig~GE~ 278 (461)
..+|..-.+. +- -=+++.|.|--.... ..+ .......+||.||+.=.+
T Consensus 312 -~~Ia~~v~~~-gk~~IivvNKwDLv~~~~~~~~~~~i~~~l~~~~~~piv~ISA~~g 367 (474)
T PRK03003 312 -QRVLSMVIEA-GRALVLAFNKWDLVDEDRRYYLEREIDRELAQVRWAPRVNISAKTG 367 (474)
T ss_pred -HHHHHHHHHH-CCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf -9999999980-9957999971441686789999999986455448985699981048
No 150
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.34 E-value=0.0014 Score=47.49 Aligned_cols=129 Identities=22% Similarity=0.224 Sum_probs=65.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEECC----CCCCCH------HHHHHHHHHHCCCCCC-CC-CCCCCHHH
Q ss_conf 996234433346889999999986148950-78205----422100------4779999851034742-22-33210368
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKI-LMASL----DVHRPA------AQEQLRYLGEQIQVDT-LE-VIPEQSPE 169 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV-~lv~~----Dt~R~a------A~eQL~~~a~~~~v~~-~~-~~~~~dp~ 169 (461)
|.+.|..|+||||-+-|++..|+. .+.+| ++.+- +-.|.| +-.+=..+|. .+.+. .. ..+.-++.
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~-~~~~v~GF~T~evre~g~R~GF~iv~l~~g~~~~la~-~~~~~~~~vGky~v~~~ 79 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKS-EGVKVGGFYTPEVREGGRRIGFDIVDLASGERGPLAR-VGGVSGPRVGKYVVNLE 79 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCEECCCCEEEEEEEECCCCCEEEEEE-ECCCCCCCCCCCEECHH
T ss_conf 899789998899999999999986-7970748993021258937899999904782677444-06887754577166689
Q ss_pred H---HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf 9---999999999741588699833442221124689999998513851-100031011122568888988763
Q gi|254780711|r 170 K---IAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADALTGQDAVHLARNFDKI 239 (461)
Q Consensus 170 ~---i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da~~Gq~a~~~a~~F~~~ 239 (461)
. ++-.++..+. ..+|+++||--|++......+.+ .+.++.+++ -++.|+..-. -...++.+...
T Consensus 80 ~fe~~~~~~L~~a~-~~~dlivIDEIG~mEl~s~~F~~--~v~~~l~~~~~vl~ti~~~~---~~~~v~~i~~~ 147 (168)
T pfam03266 80 EFEEIALPALRRAL-EEADLIIIDEIGPMELKSPKFRE--AIEEVLSSNKPVLAVVHRRS---DSPLVERIRRR 147 (168)
T ss_pred HHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHHH--HHHHHHCCCCCEEEEEEECC---CCHHHHHHHCC
T ss_conf 99999999998406-68989999763145331499999--99999669997999997258---98389997417
No 151
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=97.34 E-value=0.016 Score=39.37 Aligned_cols=179 Identities=15% Similarity=0.127 Sum_probs=101.9
Q ss_pred EEEECC-CCCCHHHHHHHHHHHHHHHCCC-----CEEEECC----CCCCCHHHHHHHHHHHCCC-----CCCCCCCCC--
Q ss_conf 996234-4333468899999999861489-----5078205----4221004779999851034-----742223321--
Q gi|254780711|r 103 IMLVGL-QGSGKTTTTAKIAYHLKTLKKK-----KILMASL----DVHRPAAQEQLRYLGEQIQ-----VDTLEVIPE-- 165 (461)
Q Consensus 103 IllvGl-~GsGKTTT~aKLA~~~~~~~~~-----kV~lv~~----Dt~R~aA~eQL~~~a~~~~-----v~~~~~~~~-- 165 (461)
+++.|- +++|||..++-|++.++.+ |+ |+.-..| |..|.+-...|+..+...- -|+......
T Consensus 5 ~FITGTDTdVGKT~vsaaL~~~l~~~-G~~v~~~KPVasG~~~~~~g~~~~Da~~l~~~~~~~~~~~~vnP~~~~~~~aa 83 (231)
T PRK12374 5 FFITGTDTSVGKTVVSRALLQALASQ-GKSVAGYKPVAKGSKETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESS 83 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC
T ss_conf 79987899953999999999999978-99488885688399668998724789999987378999887197668866577
Q ss_pred ------CHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCH-HHHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHHHHHH
Q ss_conf ------036899999999997415886998334422--211-2468999999851385110003101112--25688889
Q gi|254780711|r 166 ------QSPEKIAIRATQSARDGGYDAVILDTAGRN--HIN-DSLMQEISEIKSLTNPHEILLVADALTG--QDAVHLAR 234 (461)
Q Consensus 166 ------~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~--~~d-~~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~~~a~ 234 (461)
-|.. ...+++... .+.+|+++|.-||-. +.+ ...+.. +....+ -.++||.+.-.| ..++=.++
T Consensus 84 ~~~~~~id~~-~i~~~~~~l-~~~~d~vlVEGAGG~~vPl~~~~~~~D---l~~~l~-lPVILV~~~~LG~INHtLLT~e 157 (231)
T PRK12374 84 VAHSCPINYT-LISNGLANL-TDKVDHVVVEGTGGWRSLMNDLRPLSE---WVVQEQ-LPVLMVVGIQEGCINHALLTAQ 157 (231)
T ss_pred HHHCCCCCHH-HHHHHHHHH-HHHCCEEEEECCCCEEECCCCCCHHHH---HHHHCC-CCEEEEECCCCCHHHHHHHHHH
T ss_conf 4454857899-999999998-855797999779862130476514999---999839-9999998898684889999999
Q ss_pred HH-HHHCCCCCEEEEECCCCCCC--CHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHH
Q ss_conf 88-76358440776411576633--0367778884787302615867232100136889987
Q gi|254780711|r 235 NF-DKIVDLTGIILTRMDGDGRG--GAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANR 293 (461)
Q Consensus 235 ~F-~~~~~i~giIlTKlD~~akg--G~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~r 293 (461)
+- +..+++-|+|+-++|++-.. -..-++...++.|+ +| .+.-|..++|+.++..
T Consensus 158 al~~~gl~l~G~I~N~~~p~~~~~~e~i~~L~~~~~~P~--LG---~iP~l~~~~~~~~~~~ 214 (231)
T PRK12374 158 AIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPL--IG---ELPYLPRAEQRELGQY 214 (231)
T ss_pred HHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCE--EE---ECCCCCCCCHHHHHHH
T ss_conf 999789957999998367970467889999998559997--88---6899999898999975
No 152
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.31 E-value=0.0028 Score=45.26 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=66.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCC------CCCCCCCCC--------
Q ss_conf 1899623443334688999999998614-8950782054221004779999851034------742223321--------
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQ------VDTLEVIPE-------- 165 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~------v~~~~~~~~-------- 165 (461)
..+++.+++|+|||++...++..+..+. +.+|++++ .+ |+-+.++.+.+.+..+ +.++.....
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLV-PT-RELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLE 102 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CC-HHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 9889989999609999999999986338997599990-85-999999998860102102044556524773799999997
Q ss_pred -C--H-----HHHHHHHHHHH--HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHH
Q ss_conf -0--3-----68999999999--974158869983344222112468999999851385110003101112256888898
Q gi|254780711|r 166 -Q--S-----PEKIAIRATQS--ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARN 235 (461)
Q Consensus 166 -~--d-----p~~i~~~a~~~--a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~ 235 (461)
. + +..+ .+.+.. .....+++||||=|=+.... .-...+..+.....+.-.++.+.||...+..+....
T Consensus 103 ~~~~~i~i~t~~~l-~~~~~~~~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 180 (201)
T smart00487 103 SGKTDILVTTPGRL-LDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred CCCCCEEEECHHHH-HHHHHHCCCCCCCCEEEEEECHHHHHCC-CCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 59998999558999-9999727545254319999896775125-709999999996799997899924898689999999
Q ss_pred HH
Q ss_conf 87
Q gi|254780711|r 236 FD 237 (461)
Q Consensus 236 F~ 237 (461)
|.
T Consensus 181 ~~ 182 (201)
T smart00487 181 FL 182 (201)
T ss_pred HC
T ss_conf 78
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.29 E-value=0.0048 Score=43.44 Aligned_cols=152 Identities=19% Similarity=0.240 Sum_probs=74.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 899623443334688999999998614-8950782054221004779999851034742223321036899999999997
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
-|.++|--++||||.+..|.+...... ...+---..|.. ..||-+ |+.+..... .+.
T Consensus 4 Nv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~---~~E~er------giTI~~~~~-------------~~~ 61 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSN---DLERER------GITILAKNT-------------AVT 61 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCC---HHHHHC------CCCEEEEEE-------------EEE
T ss_conf 8999906898799999999997487630465216861475---888872------876334589-------------999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHHHHHHCCCCCEEEEECCC-CC
Q ss_conf 41588699833442221124689999998513851100031011122-----5688889887635844077641157-66
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARNFDKIVDLTGIILTRMDG-DG 254 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~F~~~~~i~giIlTKlD~-~a 254 (461)
.+++-+-+|||+|- .+...|+..-.+++ |-.+||+||.-|- .+...|..++ +++ =++++|+|- ++
T Consensus 62 ~~~~~~n~IDtPGH----~dF~~~~~~~~~~~--D~ailVVdA~~Gv~~QT~~~l~~a~~~~--~~~-iv~iNK~D~~~a 132 (194)
T cd01891 62 YKDTKINIVDTPGH----ADFGGEVERVLSMV--DGVLLLVDASEGPMPQTRFVLKKALELG--LKP-IVVINKIDRPDA 132 (194)
T ss_pred ECCEEEEEEECCCC----HHHHHHHHHHHHHC--CEEEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEECCCCCCC
T ss_conf 89988999989984----77777898776434--4678986537897589999999998729--974-998856458988
Q ss_pred CCCHHHHHHHH-----------HCCCHHHEE--CCCCCCCCCC
Q ss_conf 33036777888-----------478730261--5867232100
Q gi|254780711|r 255 RGGAALSMRTV-----------TGKPIKAIG--TGEKINDLEN 284 (461)
Q Consensus 255 kgG~als~~~~-----------~~~PI~fig--~GE~~~dle~ 284 (461)
+.=-..+-... ...||..++ +|...|+++.
T Consensus 133 ~~~~v~~ei~~~~~~~~~~~~~~~~pii~~SA~~G~~~d~~~~ 175 (194)
T cd01891 133 RPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 8999999999999863999333588578725655335778865
No 154
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=97.28 E-value=0.013 Score=40.09 Aligned_cols=208 Identities=19% Similarity=0.134 Sum_probs=114.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH------------HHHHHHHH--HC-----------C
Q ss_conf 18996234433346889999999986148950782054221004------------77999985--10-----------3
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA------------QEQLRYLG--EQ-----------I 155 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA------------~eQL~~~a--~~-----------~ 155 (461)
.-|.+.|=-|.||+||++-|++-|.. .|+||++|.||--.-.- .+.++.-. +. -
T Consensus 5 r~IAiYGKGGIGKSTtssNlsAAlA~-~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G~~ 83 (293)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVE-MGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK 83 (293)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCC
T ss_conf 57999779844587789999999997-79969997489831656876289999708899876498121538789743779
Q ss_pred CCCCCCCC---CCCH----HHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HC
Q ss_conf 47422233---2103----6899999999997-4158869983344222112468999999851385110003101--11
Q gi|254780711|r 156 QVDTLEVI---PEQS----PEKIAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LT 225 (461)
Q Consensus 156 ~v~~~~~~---~~~d----p~~i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~ 225 (461)
||-++.+. ++.. -+-.+.+-++... .+.+|+|+.|..|----- ...-=.+.-..+++++|-++ |.
T Consensus 84 gI~CVEsGGPePGvGCAGRGIitai~~Le~lga~ed~D~V~yDVLGDVVCG-----GFAmPir~g~A~evyIVtSge~ms 158 (293)
T PRK13234 84 GIKCVESGGPEPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCG-----GFAMPIRENKAQEIYIVMSGEMMA 158 (293)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC-----CCCCCCCCCCCCEEEEEECCCHHH
T ss_conf 848976899899888777131467888877187657999999567766514-----755665458876899994671879
Q ss_pred CHHHHHHHHHHHHH-----CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 22568888988763-----5844077641157663303677788847873026158672321001368899877358627
Q gi|254780711|r 226 GQDAVHLARNFDKI-----VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV 300 (461)
Q Consensus 226 Gq~a~~~a~~F~~~-----~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~ 300 (461)
=+.|-|+++.-++. +.+.|+|....+.+.----+=..+..++.||... -|.++.--.+.+-|
T Consensus 159 lyAANnI~~~i~~~~~~g~~rlgGlI~N~r~~~~e~~~v~~fa~~~gt~ii~~---------IPrs~~v~~aE~~~---- 225 (293)
T PRK13234 159 LYAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAKRLGSKLIHF---------VPRDNIVQHAELRR---- 225 (293)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEE---------CCCCHHHHHHHHCC----
T ss_conf 99999999999998632696246899717898537999999999849937997---------79968899999739----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 889998742112678998886531046
Q gi|254780711|r 301 VSLVEKAARNLNEKQAALTAKKIAKGK 327 (461)
Q Consensus 301 ~~l~e~~~~~~d~~~~~~l~~k~~~g~ 327 (461)
++++|.+++.---+.-.+|+++|..+.
T Consensus 226 ~TviE~~P~s~~A~~Yr~LA~~I~~n~ 252 (293)
T PRK13234 226 MTVIEYAPDSKQAGEYRALAEKIHANS 252 (293)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 777896889879999999999998478
No 155
>KOG1532 consensus
Probab=97.28 E-value=0.0019 Score=46.45 Aligned_cols=201 Identities=21% Similarity=0.268 Sum_probs=98.1
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-----CCHHH---------HHHHHHHHCCCCCCCC
Q ss_conf 258841899623443334688999999998614895078205422-----10047---------7999985103474222
Q gi|254780711|r 96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH-----RPAAQ---------EQLRYLGEQIQVDTLE 161 (461)
Q Consensus 96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~-----R~aA~---------eQL~~~a~~~~v~~~~ 161 (461)
...+|.+|+.+|--||||||.+-+|-.|+..+ +.++-+|..|-- -||-+ |-+++|.---|--+.
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~-~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~- 92 (366)
T KOG1532 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAK-KTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV- 92 (366)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH-
T ss_conf 55687079999447788413999999998623-6998088678888548886677566543099999983889986403-
Q ss_pred CCCCCH--HHHH--HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHH
Q ss_conf 332103--6899--999999997415886998334422211246899999985138511000310111225688889887
Q gi|254780711|r 162 VIPEQS--PEKI--AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFD 237 (461)
Q Consensus 162 ~~~~~d--p~~i--~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~ 237 (461)
..-+ ...+ +-.-++.. .+.+|++||||+|-. | +|+-.|. | .-+.++|.
T Consensus 93 --TsLNLF~tk~dqv~~~iek~-~~~~~~~liDTPGQI--------------------E-~FtWSAs-G---sIIte~la 144 (366)
T KOG1532 93 --TSLNLFATKFDQVIELIEKR-AEEFDYVLIDTPGQI--------------------E-AFTWSAS-G---SIITETLA 144 (366)
T ss_pred --HHHHHHHHHHHHHHHHHHHH-HCCCCEEEECCCCCE--------------------E-EEEECCC-C---CCHHHHHH
T ss_conf --35899998789999999974-220477997488806--------------------8-9984278-5---01586676
Q ss_pred HHCCCCCEEEEECCCCCCCC---------HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 63584407764115766330---------367778884787302615867232100136889987735862788999874
Q gi|254780711|r 238 KIVDLTGIILTRMDGDGRGG---------AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAA 308 (461)
Q Consensus 238 ~~~~i~giIlTKlD~~akgG---------~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~ 308 (461)
...| -||+--+|....-- -|-|+.+.|++|..-+=+--.+-|- .||- ++.+=.|..|
T Consensus 145 ss~p--tvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~------~fa~------eWm~DfE~Fq 210 (366)
T KOG1532 145 SSFP--TVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDS------EFAL------EWMTDFEAFQ 210 (366)
T ss_pred HCCC--EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC------HHHH------HHHHHHHHHH
T ss_conf 1398--599999447767884169988999999998626876999714344561------8899------9999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 21126789988865310463799999999998
Q gi|254780711|r 309 RNLNEKQAALTAKKIAKGKFDLEDLAEQFRQT 340 (461)
Q Consensus 309 ~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i 340 (461)
+++.+.+..-+..-.-+=...|+.||.+++.+
T Consensus 211 eAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv 242 (366)
T KOG1532 211 EALNEAESSYMSNLTRSMSLMLEEFYRSLRTV 242 (366)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 99976303266776654798999998317557
No 156
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.27 E-value=0.011 Score=40.56 Aligned_cols=160 Identities=21% Similarity=0.306 Sum_probs=92.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH
Q ss_conf 12699899999999999998718774210002588418996234433346889999999986148950782054221004
Q gi|254780711|r 65 LRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA 144 (461)
Q Consensus 65 ~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA 144 (461)
..+.+|.+.+.+++... .+.. . .+.+.. .-++|.|..|+|||--+.=+|+.+.. +|++|+.+++.-+
T Consensus 156 ~~~~sprenm~~i~~~~-~~fi----~--~F~~~~-~nLlf~G~~G~GKTfLa~~IA~ell~-~g~sViy~ta~~L---- 222 (330)
T PRK06835 156 DEPISPRENMENILEKC-LNFI----K--NFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLD-RGKTVIYRTSDEL---- 222 (330)
T ss_pred CCCCCHHHHHHHHHHHH-HHHH----H--HCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEHHHH----
T ss_conf 88989899999999999-9998----7--247888-86698899999889999999999998-7994999629999----
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 77999985103474222332103689999999999741588699833442221124689999998513851100031011
Q gi|254780711|r 145 QEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL 224 (461)
Q Consensus 145 ~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~ 224 (461)
++.|+.+- |.. .+ +- .+.++.. ..+|++|||--|--+..+.-..+|=.+
T Consensus 223 ~~~l~~~~-------~~~-~~-~~----~~~~~~l--~~~DLLIIDDLG~E~~t~~~~~~Lf~i---------------- 271 (330)
T PRK06835 223 IENLREIR-------FNN-DN-DA----PELEDLL--INCDLLIIDDLGTESITEFSKTELFNL---------------- 271 (330)
T ss_pred HHHHHHHH-------CCC-CC-CH----HHHHHHH--HHCCEEEEECCCCCCCCHHHHHHHHHH----------------
T ss_conf 99999975-------457-64-48----9999999--618989972103455886899999999----------------
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf 12256888898876358440776411576633036777888478730261586723210013688998773586278899
Q gi|254780711|r 225 TGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLV 304 (461)
Q Consensus 225 ~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~ 304 (461)
+.-+...++|+. |+|-=.+++|...+.+|+.|||+|+=-+..+.
T Consensus 272 -----------------------------------IN~R~~~~k~tI-ITTNl~~~eL~~~y~eRi~SRi~~~~~~~~~~ 315 (330)
T PRK06835 272 -----------------------------------INKRLLMNKKMI-ISTNLSLEELLKTYSERIASRLLGNFTLLKFY 315 (330)
T ss_pred -----------------------------------HHHHHHCCCCEE-EECCCCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf -----------------------------------999986799979-98899989999987489999998185499852
No 157
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.26 E-value=0.00037 Score=51.95 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=35.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 89962344333468899999999861489507820542210
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP 142 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~ 142 (461)
+|.++|..||||||.+.+|+..+.. .+.+|.+++.|.|--
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~-~~~~~~vis~D~yy~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV-NGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCC
T ss_conf 9899898977899999999999846-488539995466645
No 158
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.002 Score=46.40 Aligned_cols=108 Identities=27% Similarity=0.335 Sum_probs=76.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-C-----CCCCCCCEEEEEEC
Q ss_conf 99999852469699999999999998303111269989999999999999871877421-0-----00258841899623
Q gi|254780711|r 34 IRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIE-L-----DLNAPSPLVIMLVG 107 (461)
Q Consensus 34 i~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~-l-----~~~~~~p~vIllvG 107 (461)
+.++|..|.|.+.++..+--.|++.+.++.+ .+-.++.+.+ ++..|.+--+++... . -.....|.+||+=|
T Consensus 20 L~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~--~~v~~~eir~-~~~~l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGG 96 (299)
T COG2074 20 LARSLTAAGVDPDLAYSIAIEIQEELKKEGI--RLVTKDEIRE-VYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILIGG 96 (299)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC--EEEEHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 9888886146825899999999999975797--2761999999-999998732879999999999986157875999617
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 4433346889999999986148950782054221004779999851
Q gi|254780711|r 108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE 153 (461)
Q Consensus 108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~ 153 (461)
+.|+||||-++-+|+.+- -+ -++++|.-| |=|+-...
T Consensus 97 asGVGkStIA~ElA~rLg----I~-~visTD~IR----EvlR~ii~ 133 (299)
T COG2074 97 ASGVGKSTIAGELARRLG----IR-SVISTDSIR----EVLRKIIS 133 (299)
T ss_pred CCCCCHHHHHHHHHHHCC----CC-EEECCHHHH----HHHHHHCC
T ss_conf 887772579999999729----86-100424799----99997379
No 159
>PRK04040 adenylate kinase; Provisional
Probab=97.23 E-value=0.0011 Score=48.32 Aligned_cols=170 Identities=21% Similarity=0.263 Sum_probs=81.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC-CCC-------HHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 4189962344333468899999999861489507820542-210-------04779999851034742223321036899
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV-HRP-------AAQEQLRYLGEQIQVDTLEVIPEQSPEKI 171 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt-~R~-------aA~eQL~~~a~~~~v~~~~~~~~~dp~~i 171 (461)
+.+++++|+.|+||||.+.++...+.. +.++ +-..|. |+. -.-|+|+. +|. .+-..+
T Consensus 2 ~k~VvvtGiPGvGKTTv~~~~~~~l~~--~~~~-vn~G~~M~e~A~~~glv~~RDemRk------L~~------~~q~~l 66 (189)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKE--DYKI-VNFGDVMLEVAKEEGLVEHRDEMRK------LPL------EEQKEL 66 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC--CCEE-EEHHHHHHHHHHHCCCCCCHHHHCC------CCH------HHHHHH
T ss_conf 418999758988789999999997235--8759-8677999999998177347788747------999------999999
Q ss_pred HHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH---CCCCCEE
Q ss_conf 9999999974-158869983344222112468999-9998513851100031011122568888988763---5844077
Q gi|254780711|r 172 AIRATQSARD-GGYDAVILDTAGRNHINDSLMQEI-SEIKSLTNPHEILLVADALTGQDAVHLARNFDKI---VDLTGII 246 (461)
Q Consensus 172 ~~~a~~~a~~-~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~---~~i~giI 246 (461)
-+.|.+.-.. .+-..|||||-.--.+....+--| ..+.+.++|+.+++ +.|.- ++... +.-++. -++.+.-
T Consensus 67 Q~~Aa~~I~~~~~~~~ViIDTHa~Iktp~GylpGLP~~Vl~~L~P~~ivl-ieA~P-~eIl~--RR~~D~tR~RD~es~~ 142 (189)
T PRK04040 67 QREAAERIAEMAGEGPVIVDTHATIKTPGGYLPGLPEWVLEELNPDVIVL-IEADP-DEILM--RRLRDPTRRRDVETEE 142 (189)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEE-EECCH-HHHHH--HHHCCCCCCCCCCCHH
T ss_conf 99999999983578728994452002688677899899998669988999-97588-99999--8842556689878899
Q ss_pred EEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6411576633036777888478730261586723210013688998773
Q gi|254780711|r 247 LTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL 295 (461)
Q Consensus 247 lTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL 295 (461)
--+..-..--.+|.+....+|+||+++-+ +++.|+.=|..|+
T Consensus 143 ~I~~hq~~nR~~a~ayavltga~Vkiv~N-------~e~~~e~Aa~~iv 184 (189)
T PRK04040 143 SIEEHQEMNRAAAMAYAVLTGATVKIVEN-------HEGLLEEAAEEIV 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEEEEC-------CCCCHHHHHHHHH
T ss_conf 99999999999999999973984899978-------9998899999999
No 160
>KOG2743 consensus
Probab=97.23 E-value=0.0052 Score=43.16 Aligned_cols=148 Identities=21% Similarity=0.207 Sum_probs=85.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC------CCCCCCHHHHH-----HHHHHHCC-CCCCCCCCCC
Q ss_conf 884189962344333468899999999861489507820------54221004779-----99985103-4742223321
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS------LDVHRPAAQEQ-----LRYLGEQI-QVDTLEVIPE 165 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~------~Dt~R~aA~eQ-----L~~~a~~~-~v~~~~~~~~ 165 (461)
.-| |-.+.|--||||||-.-+++. .+++|+|+++- .|.-|+=+++| -+.|-.-- |+-+. ...
T Consensus 56 rIP-vtIITGyLGaGKtTLLn~Il~---~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCC--tVk 129 (391)
T KOG2743 56 RIP-VTIITGYLGAGKTTLLNYILT---GQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCC--TVK 129 (391)
T ss_pred CCC-EEEEEECCCCCHHHHHHHHHC---CCCCCEEEEEHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEEE--EEC
T ss_conf 444-399973146786899999971---67885599970103650114677775034415799999864880899--854
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCHHHHH-------HHHH
Q ss_conf 0368999999999974158869983344222112468999---99985138511000310111225688-------8898
Q gi|254780711|r 166 QSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEI---SEIKSLTNPHEILLVADALTGQDAVH-------LARN 235 (461)
Q Consensus 166 ~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El---~~i~~~~~p~e~~lV~da~~Gq~a~~-------~a~~ 235 (461)
.+-+...-+-++ ++..+|.|++.|.| +.+-..+.+-. ..+..-++-|-++-|+||--....++ +-++
T Consensus 130 ~~gvraie~lvq--kkGkfD~IllETTG-lAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA 206 (391)
T KOG2743 130 DNGVRAIENLVQ--KKGKFDHILLETTG-LANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEA 206 (391)
T ss_pred CHHHHHHHHHHH--CCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHCCCCCCCCHHHH
T ss_conf 308999999984--67876469996047-888277888876446546740430389997436688653125865415788
Q ss_pred HHHHCCCCCEEEEECCCCC
Q ss_conf 8763584407764115766
Q gi|254780711|r 236 FDKIVDLTGIILTRMDGDG 254 (461)
Q Consensus 236 F~~~~~i~giIlTKlD~~a 254 (461)
|.+..-.+.+|+.|.|--.
T Consensus 207 ~~QiA~AD~II~NKtDli~ 225 (391)
T KOG2743 207 TRQIALADRIIMNKTDLVS 225 (391)
T ss_pred HHHHHHHHEEEECCCCCCC
T ss_conf 8887541135640435567
No 161
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.22 E-value=0.0015 Score=47.20 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=41.0
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9741588699833442221124689999998513851100031011122-----56888898876358440776411576
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARNFDKIVDLTGIILTRMDGD 253 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~F~~~~~i~giIlTKlD~~ 253 (461)
+.....-+.+||++|-..+-.+++. =.....||..+||++|..|- +.+..+.+.. +++ -|++||+|-.
T Consensus 79 ~~~~~k~it~iD~pGH~~y~kt~i~----G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~--ip~-~vvitKiDl~ 151 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLF----GLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALN--IPV-FVVVTKIDLA 151 (224)
T ss_pred ECCCCCEEEEEECCCHHHHHHHHHH----HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC--CCE-EEEEECCCCC
T ss_conf 1367867999978873999999998----76355689899993178897799999999999839--998-9999897768
Q ss_pred C
Q ss_conf 6
Q gi|254780711|r 254 G 254 (461)
Q Consensus 254 a 254 (461)
.
T Consensus 152 ~ 152 (224)
T cd04165 152 P 152 (224)
T ss_pred C
T ss_conf 9
No 162
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.031 Score=37.26 Aligned_cols=304 Identities=15% Similarity=0.166 Sum_probs=145.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH---CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHH
Q ss_conf 5884189962344333468899999999861---48950782054221004779999851034742223321-0368999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTL---KKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIA 172 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~---~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~ 172 (461)
..-|+.++|.|+.|+||||++--+|..+--. .+.. .-.|+..|. .....-.+++..... ...++-+
T Consensus 34 ~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~p--C~~C~~C~~--------i~~g~~~DviEidaas~~gVd~I 103 (557)
T PRK07270 34 GKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEP--CNNCDICRD--------ITNGSLEDVIEIDAASNNGVDEI 103 (557)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC--CCCCHHHHH--------HHCCCCCCEEEECCCCCCCHHHH
T ss_conf 99540442108998689999999999957999899998--887779999--------87589997487347776788999
Q ss_pred HHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHH----HHHHH-------
Q ss_conf 99999997----4158869983344222112468999999851385110003101112256888----89887-------
Q gi|254780711|r 173 IRATQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHL----ARNFD------- 237 (461)
Q Consensus 173 ~~a~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~----a~~F~------- 237 (461)
++-.+.+. ...|-|+|||-|-++..+. ..-|-+..+.- |..++|++=++--+....+ ++.|+
T Consensus 104 Rei~~~~~~~P~~~~yKV~IIDEah~Ls~~A--~NALLKtLEEP-P~~~vFIL~Ttep~kIl~TI~SRCQrf~F~~i~~~ 180 (557)
T PRK07270 104 RDIRDKSTYAPSRATYKVYIIDEVHMLSTGA--FNALLKTLEEP-TENVVFILATTELHKIPATILSRVQRFEFKSIKTK 180 (557)
T ss_pred HHHHHHHCCCCCCCCEEEEEECCHHHCCHHH--HHHHHHHHHCC-CCCEEEEEEECCHHHCCHHHHHHHHHCCCCCCCHH
T ss_conf 9999984238777883899971445349999--99899985289-98769999849947592888743000108889999
Q ss_pred ------------HHCCCCCEEEEECCCCCCCC--HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf ------------63584407764115766330--3677788847873026158672321001368899877358627889
Q gi|254780711|r 238 ------------KIVDLTGIILTRMDGDGRGG--AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 238 ------------~~~~i~giIlTKlD~~akgG--~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l 303 (461)
+.+.++---+.-+-..|.|| -|||+-... |.| +.|++++ ...|..+||.=|...|
T Consensus 181 ~i~~~L~~I~~~E~i~~~~~aL~~Ia~~a~G~mRdAlsiLdQ~---~s~-~~~~~it-------~~~v~~~~G~~~~~~l 249 (557)
T PRK07270 181 AIREHLAWILDKEGISFEVEALNLIARRAEGGMRDALSILDQA---LSL-SQDNQVT-------IAIAEEITGSISLLAL 249 (557)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH---HHC-CCCCCCC-------HHHHHHHHCCCCHHHH
T ss_conf 9999999999983998699999999997799687899999999---971-7999767-------9999999689989999
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHH------HHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHH
Q ss_conf 998742112678--998886531046379999999999------851148899999873134423432311167888889
Q gi|254780711|r 304 VEKAARNLNEKQ--AALTAKKIAKGKFDLEDLAEQFRQ------TQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINH 375 (461)
Q Consensus 304 ~e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~Ql~~------i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~ 375 (461)
.+-+...++.+. +-.....+...-.+...|.+.+-. +-|.+|=.....-+ . ......+...+-+
T Consensus 250 ~~l~~~~~~~d~~~~l~~~~~~~~~G~d~~~~~~dl~~~~Rdll~~k~~~~~~~~~~~------~--~~~~~~~~~~l~~ 321 (557)
T PRK07270 250 DDYVAALSQQDATKALAALETIFDSGKSMSRFATDLLTYLRDLLIVKAGGENTHHSAV------F--DENLSLSQDRIFQ 321 (557)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH------H--HHHHCCCHHHHHH
T ss_conf 9999999817999999999999986999999999999999976741227745555676------7--8887069999999
Q ss_pred HHHHHHCCCHHHHC--CCCCCCHHHHHHHHCCCC---------CCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99997458987860--841133578999723266---------7989999999999999999998606
Q gi|254780711|r 376 HIAIIASMTKEERA--NPSIIKHSRKKRIAAGSG---------TNAAKINKLLKLHRQVAEMMHSTQG 432 (461)
Q Consensus 376 ~~aII~SMT~~Er~--~P~ll~~SR~~RIA~GSG---------~~v~eVn~Llk~f~~m~kmmk~~~~ 432 (461)
|..+++.--.+=|- +|+++=.=-..+++...+ ....++..|-.+-.+.++-++....
T Consensus 322 ~i~~l~~~~~~~~~~~~p~i~lE~~~~kl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 389 (557)
T PRK07270 322 MIDVVTSSLPEIKKGTHPKIYAEMMTIRLAEIEQIASQANLPGELTAEIATLKQELAQLKQQLSQLQS 389 (557)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999751478129999999998534565664335435788999999999999998753302
No 163
>CHL00181 cbbX CbbX; Provisional
Probab=97.20 E-value=0.023 Score=38.32 Aligned_cols=124 Identities=23% Similarity=0.217 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 98999999999999998524696999999999999983031112699899999999999998718774210002588418
Q gi|254780711|r 23 SETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLV 102 (461)
Q Consensus 23 ~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~v 102 (461)
+.+.++++|+|+-.. =|++.-|++.+..+...+.- +.+-+-.| ++..+ ...-
T Consensus 10 ~~~~lee~L~eLd~e----liGL~~VK~~v~~l~~~~~~------------------~~~R~~~G-----l~~~~-~s~h 61 (287)
T CHL00181 10 NKTQIQEVLDELDEE----LIGLVPVKTRIREIAALLLV------------------DRLRKNLG-----LVSSS-PGLH 61 (287)
T ss_pred HHCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHH------------------HHHHHHCC-----CCCCC-CCCE
T ss_conf 453499999999886----46969999999999999999------------------99999879-----99888-7653
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9962344333468899999999861489-507820542210047799998510347422233210368999999999974
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKK-KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~-kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
.+|+|+.|.||||.+--+|..|...+-- +--++.++ ..++.+.+.++...+ ..+.++.|..
T Consensus 62 ~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~-----------------r~dLvg~yvG~Ta~k-t~~~i~~a~G 123 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVT-----------------RDDLVGQYIGHTAPK-TKEVLKKAMG 123 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC-----------------HHHHCCCCCCCCHHH-HHHHHHHCCC
T ss_conf 8887899867999999999999986995589589953-----------------588416353521699-9999996459
Q ss_pred CCCCEEEEECCCCC
Q ss_conf 15886998334422
Q gi|254780711|r 182 GGYDAVILDTAGRN 195 (461)
Q Consensus 182 ~~~D~iiiDTaGR~ 195 (461)
-|++||-|=.+
T Consensus 124 ---GVLfIDEAY~L 134 (287)
T CHL00181 124 ---GVLFIDEAYYL 134 (287)
T ss_pred ---CEEEEECHHHH
T ss_conf ---87998244653
No 164
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.003 Score=44.98 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=21.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 884189962344333468899999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHL 124 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~ 124 (461)
.-++-+||.|..|+||||++-=||+-+
T Consensus 36 ~~~~a~lf~g~rg~gkt~~ar~~a~~l 62 (663)
T PRK08770 36 RVHHAFLFTGTRGVGKTTIARIFAKSL 62 (663)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 974047622799888889999999986
No 165
>PRK06526 transposase; Provisional
Probab=97.20 E-value=0.0044 Score=43.70 Aligned_cols=143 Identities=14% Similarity=0.143 Sum_probs=82.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 999852469699999999999998303-11126998--999999999999987187742100025884189962344333
Q gi|254780711|r 36 RTFLEADVSLEVVQSFSKRVQEKAKGE-KILRSIQP--GQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSG 112 (461)
Q Consensus 36 ~aLLeaDV~~~vv~~~~~~Ik~k~~~~-~~~~~~~~--~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsG 112 (461)
..|+++-+..+-.+.+-..++.--... +....++- ...+-+..-.+|. ...+...+.+ |+++|+.|+|
T Consensus 40 ~~Lle~E~~~R~~rr~~rrlk~A~fp~~ktLe~fd~~~~~~l~~~~i~~La--------~~~fi~~~~N-vil~G~~GtG 110 (254)
T PRK06526 40 AACLQREVAARESHGGEGRIRAARFPSRKSLEEFDFDHQRSLKRDTIAHLG--------TLDFVTGKEN-VVFLGPPGTG 110 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHH--------CCCHHHCCCC-EEEECCCCCC
T ss_conf 999999999999989999999779799889876786567898999999986--------3717765887-8998999986
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 46889999999986148950782054221004779999851034742223321036899999999997415886998334
Q gi|254780711|r 113 KTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTA 192 (461)
Q Consensus 113 KTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTa 192 (461)
||--+.-||..... .|++|..+.++.. +++|..- +. .++- .+.+. +-..+|++|||--
T Consensus 111 KThLA~Alg~~A~~-~G~~v~f~~~~~L----~~~L~~a-~~---------~g~~-----~~~~~--~l~~~dLLIiDe~ 168 (254)
T PRK06526 111 KTHLAIGLGIRACQ-AGHRVLFATAAQW----VARLAAA-HH---------AGRL-----QDELV--KLGRIPLLIVDEV 168 (254)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEEHHHH----HHHHHHH-HH---------CCCH-----HHHHH--HHHCCCEEEEECC
T ss_conf 89999999999998-6996799877999----9999998-85---------5809-----99999--8513687765021
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 42221124689999998
Q gi|254780711|r 193 GRNHINDSLMQEISEIK 209 (461)
Q Consensus 193 GR~~~d~~lm~El~~i~ 209 (461)
|..+.+..-.+-|-++.
T Consensus 169 g~~~~~~~~a~~lf~li 185 (254)
T PRK06526 169 GYIPFEAEAANLFFQLV 185 (254)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 36447889999999999
No 166
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.19 E-value=0.0017 Score=46.97 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=23.0
Q ss_pred CCCCH-HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11335-789997232667989999999999999999998
Q gi|254780711|r 392 SIIKH-SRKKRIAAGSGTNAAKINKLLKLHRQVAEMMHS 429 (461)
Q Consensus 392 ~ll~~-SR~~RIA~GSG~~v~eVn~Llk~f~~m~kmmk~ 429 (461)
.+|++ .=|.-+.++=|-+.+|-++-+.+.-...+++-.
T Consensus 425 ~lLDGD~~R~~l~~dLgfs~~dR~enirR~~~va~~~~~ 463 (568)
T PRK05537 425 TLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITK 463 (568)
T ss_pred EEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 995468887421557898988999999999999999985
No 167
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0086 Score=41.52 Aligned_cols=214 Identities=15% Similarity=0.149 Sum_probs=94.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf 8841899623443334688999999998614895-07820542210047799998510347422233210-368999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA 175 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a 175 (461)
+-.+-+||.|..|+||||++-=||+-+--..+-. --+-.|+. -+...+-.-++++...-.+ .-++-.++-
T Consensus 36 rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~--------C~~i~~g~~~d~iEiDaAS~~~vd~~r~l 107 (816)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA--------CREIDEGRFVDYVEMDAASNRGVDEMAAL 107 (816)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH--------HHHHHCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 8631475117898888899999999867899999897877555--------78775588775478635543576899999
Q ss_pred ---HHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HH----HHHHHHHHH---------
Q ss_conf ---99997-4158869983344222112468999999851385110003101112-25----688889887---------
Q gi|254780711|r 176 ---TQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QD----AVHLARNFD--------- 237 (461)
Q Consensus 176 ---~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~----a~~~a~~F~--------- 237 (461)
+.|+- ...|-|.|||-.-.+... -+.-|-+..+.- |.++.|++ |||- |. .+..+..|+
T Consensus 108 ~~~~~y~p~~~r~KvyiiDEvHmls~~--afnalLKtlEep-P~hv~Fil-aTTd~~k~p~tilSRc~~f~l~~~~~~~i 183 (816)
T PRK07003 108 LERAVYAPVDARFKVYMIDEVHMLTNH--AFNAMLKTLEEP-PPHVKFIL-ATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183 (816)
T ss_pred HHHCCCCCCCCCEEEEEEECHHHCCHH--HHHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 986224786674479998415433999--999999840379-86648999-55880115288987776522367999999
Q ss_pred ----------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf ----------6358440----77641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r 238 ----------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 238 ----------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l 303 (461)
+.+.++- +|--.-||+-| -|||+... -|.| |.|+-- +.-++.+||.=|-..+
T Consensus 184 ~~~l~~i~~~E~i~~e~~al~lia~~a~GsmR--Dalsl~dQ---aia~-~~g~~~--------~~~v~~mLG~~d~~~~ 249 (816)
T PRK07003 184 VSHLERILGEERIAFEPQALRLLARAAQGSMR--DALSLTDQ---AIAY-SANEVT--------ETAVSGMLGALDQTYM 249 (816)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHH-CCCCCC--------HHHHHHHHCCCCHHHH
T ss_conf 99999999982997799999999997677378--88859999---9984-699737--------9999998588877899
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 998742112678--9988865310463799999999
Q gi|254780711|r 304 VEKAARNLNEKQ--AALTAKKIAKGKFDLEDLAEQF 337 (461)
Q Consensus 304 ~e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~Ql 337 (461)
+.-.....+.+- .-.....+.....+|...+..|
T Consensus 250 ~~ll~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l 285 (816)
T PRK07003 250 VRLLDALAAADGPEILAIADEMSLRSLSFSTALQDL 285 (816)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999999995589999999999998688999999999
No 168
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=97.19 E-value=0.0023 Score=45.86 Aligned_cols=218 Identities=19% Similarity=0.184 Sum_probs=89.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCCHHHHHH
Q ss_conf 8841899623443334688999999998614895-0782054221004779999851034742223----3210368999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEV----IPEQSPEKIA 172 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~i~ 172 (461)
.-.+-+||.|..|+||||++-=||+-+--..|-. --+..|.. -+...+.--++++.. ..+-|-..-.
T Consensus 36 ~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~--------c~~i~~~~~~d~~e~d~as~~~v~~~r~~ 107 (705)
T PRK05648 36 RLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSV--------CREIDEGRFVDLIEVDAASRTKVEDTREL 107 (705)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH--------HHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 8630465007898889899999999867789998897877600--------46662489776344515544788999999
Q ss_pred HHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HH----HHHHHHHHH---------
Q ss_conf 99999997-4158869983344222112468999999851385110003101112-25----688889887---------
Q gi|254780711|r 173 IRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QD----AVHLARNFD--------- 237 (461)
Q Consensus 173 ~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~----a~~~a~~F~--------- 237 (461)
.+.+.|+- ...|-|.|||-.-.+... -+.-|-+..+.- |.++.|++ |+|- |. .+.-+..|+
T Consensus 108 ~~~~~~~p~~~~~kv~~idevhmls~~--~fnallktleep-p~~v~f~~-att~~~k~p~t~~src~~~~~~~~~~~~~ 183 (705)
T PRK05648 108 LDNVQYAPTRGRYKVYLIDEVHMLSSH--SFNALLKTLEEP-PPHVKFLL-ATTDPQKLPVTILSRCLQFSLKNMSPERV 183 (705)
T ss_pred HHHCCCCCCCCCEEEEEEEHHHHCCHH--HHHHHHHHCCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 985551776774579998426541799--999998740479-75459998-42873537589997664302368999999
Q ss_pred ----------HHCCCCCEEEEECCCCCCCC--HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHH
Q ss_conf ----------63584407764115766330--367778884787302615867232100136889987735862788999
Q gi|254780711|r 238 ----------KIVDLTGIILTRMDGDGRGG--AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVE 305 (461)
Q Consensus 238 ----------~~~~i~giIlTKlD~~akgG--~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e 305 (461)
+.+.+..--+..+--.|.|+ -+||+... -|.| |.| ++. +.-+..+||.-|-..+.+
T Consensus 184 ~~~l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~dq---~~~~-~~~-~~~-------~~~v~~mlg~~~~~~~~~ 251 (705)
T PRK05648 184 VEHLSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLTDQ---AIAF-GEG-KVL-------AADVRAMLGTLDHGQVYG 251 (705)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH---HHHC-CCC-CCC-------HHHHHHHHCCCCHHHHHH
T ss_conf 9999999997599778999999999748967779999999---9860-688-407-------999999858887789999
Q ss_pred HHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 874211267899--8886531046379999999999
Q gi|254780711|r 306 KAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQFRQ 339 (461)
Q Consensus 306 ~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql~~ 339 (461)
-.+...+.+-.. ...+.+..-..+|..++.++-.
T Consensus 252 l~~a~~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~ 287 (705)
T PRK05648 252 VLQALLEGDARALLEAVRHLAEQGPDWNGVLAEMLN 287 (705)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999568999999999999858899999999999
No 169
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.19 E-value=0.0051 Score=43.24 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=60.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC------------CCCC
Q ss_conf 8418996234433346889999999986148950782054221004779999851034742223------------3210
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV------------IPEQ 166 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~------------~~~~ 166 (461)
+-++++++|+.|+||||.+...+..-.+ +|.++++++.+-- .+||...|+.+|+|+-.. +.+.
T Consensus 265 ~GsstLi~Gp~GtGKTtla~qFl~~~a~-~GE~~l~~~FeE~----~~~l~~~a~~~G~dl~~~~~~G~l~i~~~~p~~~ 339 (501)
T PRK09302 265 RGSIILVSGATGTGKTLLVSKFAEAACR-RGERCLLFAFEES----RAQLVRNATSWGIDLEEMERKGLLKIICARPEST 339 (501)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECC----HHHHHHHHHHCCCCHHHHHHCCCEEEEEECCCCC
T ss_conf 8946999889998889999999999986-5990899999679----9999999997399848887489479998370005
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 368999999999974158869983344
Q gi|254780711|r 167 SPEKIAIRATQSARDGGYDAVILDTAG 193 (461)
Q Consensus 167 dp~~i~~~a~~~a~~~~~D~iiiDTaG 193 (461)
.|.+.+..-.+.-...+.+.|+||.--
T Consensus 340 ~~~e~~~~i~~~v~~~~~~rVvIDsls 366 (501)
T PRK09302 340 GLEDHLQIIKREIEEFKPSRVAVDPLS 366 (501)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 989999999999997299899995806
No 170
>PRK08233 hypothetical protein; Provisional
Probab=97.18 E-value=0.0036 Score=44.43 Aligned_cols=84 Identities=21% Similarity=0.251 Sum_probs=51.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8841899623443334688999999998614895078205422-100477999985103474222332103689999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH-RPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~-R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
++|.||-++|..||||||-+-+|+..+. +.. +..-|.| +.-+-+++..|-+. +..+ ..-|-... .+.+
T Consensus 1 kkp~IIgIaGgSgSGKTtla~~l~~~l~---~~~--~~~~D~y~~~~~~~~~~~~~~~-~~~~----d~~d~~~l-~~~l 69 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHKLK---NSK--ALYFDRYDFDNCPEDICKWIDD-GANY----SEWVLTPL-IKDI 69 (182)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC---CCE--EEEECCCCCCCCHHHHHHHHCC-CCCC----CHHHHHHH-HHHH
T ss_conf 9988999968886789999999999746---775--8996665554687889987406-7786----66669999-9999
Q ss_pred HHHHH-CCCCEEEEECC
Q ss_conf 99974-15886998334
Q gi|254780711|r 177 QSARD-GGYDAVILDTA 192 (461)
Q Consensus 177 ~~a~~-~~~D~iiiDTa 192 (461)
...+. +.+|+||+|..
T Consensus 70 ~~l~~~~~~d~iIvEgi 86 (182)
T PRK08233 70 QELIAKSNVDYIIVDYP 86 (182)
T ss_pred HHHHCCCCCCEEEEEEE
T ss_conf 99855998728999644
No 171
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.033 Score=37.02 Aligned_cols=200 Identities=18% Similarity=0.187 Sum_probs=104.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
-..|..+||.|+.|+|||..+.-+|..+.. . +++.+.. +=+-.| .... .+-++...
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~----~--fi~v~~~-----~l~sk~---------vGes----ek~ir~~F 328 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRS----R--FISVKGS-----ELLSKW---------VGES----EKNIRELF 328 (494)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCC----C--EEEECCH-----HHHHHH---------HHHH----HHHHHHHH
T ss_conf 988836999889997589999998754498----2--4884335-----554077---------6599----99999999
Q ss_pred HHHHHCCCCEEEEEC-----CCCCCCH----HHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 999741588699833-----4422211----2468999999851385110003101112256888898876358440776
Q gi|254780711|r 177 QSARDGGYDAVILDT-----AGRNHIN----DSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIIL 247 (461)
Q Consensus 177 ~~a~~~~~D~iiiDT-----aGR~~~d----~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIl 247 (461)
..|+...--+|++|- ++|.... ...+.++-....-+.+.+-++|+-|+..-+.++. +|.-.--++.+|.
T Consensus 329 ~~A~~~~p~iifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ld~--a~lR~gRfd~~i~ 406 (494)
T COG0464 329 EKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDP--ALLRPGRFDRLIY 406 (494)
T ss_pred HHHHHCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCH--HHHCCCCCEEEEE
T ss_conf 99996699889748866674128998763799999999999747544376489964798332687--5624366303787
Q ss_pred EECCC-CCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41157-663303677788847873026158672321001368899877358--627889998742112678998886531
Q gi|254780711|r 248 TRMDG-DGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM--GDVVSLVEKAARNLNEKQAALTAKKIA 324 (461)
Q Consensus 248 TKlD~-~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm--gD~~~l~e~~~~~~d~~~~~~l~~k~~ 324 (461)
-.+.. .+|--..-......+.| -.+.++-+.++...-|+ -|+..++..|......+ ..
T Consensus 407 v~~pd~~~r~~i~~~~~~~~~~~-----------~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~--------~~ 467 (494)
T COG0464 407 VPLPDLEERLEIFKIHLRDKKPP-----------LAEDVDLEELAEITEGYSGADIAALVREAALEALRE--------AR 467 (494)
T ss_pred ECCCCHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--------CC
T ss_conf 17989899999999985415651-----------155641999998752778999999999999989985--------45
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 04637999999999985
Q gi|254780711|r 325 KGKFDLEDLAEQFRQTQ 341 (461)
Q Consensus 325 ~g~F~l~Df~~Ql~~i~ 341 (461)
.-.++.+||.+.++.++
T Consensus 468 ~~~~~~~~~~~a~~~~~ 484 (494)
T COG0464 468 RREVTLDDFLDALKKIK 484 (494)
T ss_pred CCCCCHHHHHHHHHHCC
T ss_conf 77634999999986247
No 172
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0025 Score=45.66 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=65.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 996234433346889999999986148950782054221004779999851034-7422233210368999999999974
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ-VDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~-v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
..++-|+|+||||+-.=.+.|+..++++...++.+-+-=.-+.+-|+.+++..+ ..+...+.+.-|..--+.+++...+
T Consensus 100 FaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~ 179 (1187)
T COG1110 100 FAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIES 179 (1187)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 48982788765479999999987558749999667899999999999988653785246653123665779999999865
Q ss_pred CCCCEEEEECCCCCCCH
Q ss_conf 15886998334422211
Q gi|254780711|r 182 GGYDAVILDTAGRNHIN 198 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d 198 (461)
.++|+ +|-|+.-++.+
T Consensus 180 gdfdI-litTs~FL~k~ 195 (1187)
T COG1110 180 GDFDI-LITTSQFLSKR 195 (1187)
T ss_pred CCCCE-EEEEHHHHHHH
T ss_conf 99639-99747878866
No 173
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16 E-value=0.034 Score=36.91 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=93.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC----CCCHHHHHHH
Q ss_conf 884189962344333468899999999861489507820542210047799998510347422233----2103689999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI----PEQSPEKIAI 173 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~----~~~dp~~i~~ 173 (461)
.-.+.++|.|+.|+||||++-=||+.+--..+. .--.|+. -+--+...+-.-++++... .+-|-+.-..
T Consensus 36 rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~--~~~pCg~-----C~~C~~i~~g~~~D~~EiDaAs~~~vdd~R~l~ 108 (704)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ--HGEPCGV-----CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVL 108 (704)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 975237502789878889999999996799999--9997877-----776787855899874774245445889999999
Q ss_pred HHHHHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH----------
Q ss_conf 999999-7415886998334422211246899999985138511000310111225-----688889887----------
Q gi|254780711|r 174 RATQSA-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD---------- 237 (461)
Q Consensus 174 ~a~~~a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~---------- 237 (461)
+-+.|+ ....|-|.|||-+-.+.... +.-|-+..+.- |.++.|++ |||--+ .+..+..|+
T Consensus 109 ~~~~y~P~~~~yKVyiiDEvhmLs~~a--fNAlLKtLEEP-P~~v~Fil-aTTdp~Klp~TIlSRC~~f~l~~~~~~~i~ 184 (704)
T PRK08691 109 ENAQYAPTAGKYKVYIIDEVHMLSKSA--FNAMLKTLEEP-PEHVKFIL-ATTDPHKVPVTVLSRCLQFVLRNMTAQQVA 184 (704)
T ss_pred HHCCCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 853468867853599983154438999--99999861479-75608998-548846475899988877102689999999
Q ss_pred ---------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf ---------6358440----776411576633036777888478730261586723210013688998773586278899
Q gi|254780711|r 238 ---------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLV 304 (461)
Q Consensus 238 ---------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~ 304 (461)
+.+.++- +|.-+-||+-| -|||+... -|.| |.|.-- +.-+..+||.=|-.-++
T Consensus 185 ~~L~~i~~~E~i~~e~~al~~ia~~a~Gs~R--DalslldQ---aia~-~~g~~~--------~~~v~~mLG~~d~~~~~ 250 (704)
T PRK08691 185 DHLAHVLDSEKIAYEPPALQLLGRAAAGSMR--DALSLLDQ---AIAL-GSGKVA--------ENDVRQMIGAVDKQYLY 250 (704)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHH-CCCCCC--------HHHHHHHHCCCCHHHHH
T ss_conf 9999999983985689999999997578577--79889999---9996-489626--------99999985888778999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 98742112678--9988865310463799999999
Q gi|254780711|r 305 EKAARNLNEKQ--AALTAKKIAKGKFDLEDLAEQF 337 (461)
Q Consensus 305 e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~Ql 337 (461)
+-.....+.+. .-...+.+..-.-+|+.++..+
T Consensus 251 ~ll~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l 285 (704)
T PRK08691 251 ELLTGIINQDGAALTAKAQEMAACAVGFDNALGEL 285 (704)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999995589999999999998689999999999
No 174
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.15 E-value=0.0036 Score=44.42 Aligned_cols=141 Identities=23% Similarity=0.333 Sum_probs=73.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
.|.++|..-+||||-.-+|. |.++.+|+- + |+ .. .|+... ...-
T Consensus 3 ~ValvG~pN~GKStL~N~l~-------g~~~~ivs~-~--pg-------------tT-------rd~~~~------~~~~ 46 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALA-------GRDRAIVSD-I--AG-------------TT-------RDVIEE------SIDI 46 (157)
T ss_pred EEEEECCCCCCHHHHHHHHH-------CCCCEEECC-C--CC-------------EE-------EECCEE------EEEE
T ss_conf 99998899998999999996-------897334328-8--98-------------47-------863267------8953
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHH--H-HHHHHCCCCCCCCCCCHHCCHHHHHHH-HHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 158869983344222112468999--9-998513851100031011122568888-988763584407764115766330
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEI--S-EIKSLTNPHEILLVADALTGQDAVHLA-RNFDKIVDLTGIILTRMDGDGRGG 257 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El--~-~i~~~~~p~e~~lV~da~~Gq~a~~~a-~~F~~~~~i~giIlTKlD~~akgG 257 (461)
.++.+.++||+|=... .+.++.. + .....-+.|-+++|+|+..+....+.. .......+ -=++++|.|--..--
T Consensus 47 ~~~~i~l~DTpG~~~~-~~~~e~~~~~~~~~~i~~aDlil~vvD~~~~~~~~~~~~~~~~~~~p-~i~v~NKiDl~~~~~ 124 (157)
T cd04164 47 GGIPVRLIDTAGIRET-EDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKP-IIVVLNKSDLLPDSE 124 (157)
T ss_pred CCEEEEEEECCCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCC-EEEEEECCCCCCCHH
T ss_conf 9988999726775444-57899999999986301576799998898778888999998514799-899996760148666
Q ss_pred HHHHHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf 36777888478730261--586723210
Q gi|254780711|r 258 AALSMRTVTGKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 258 ~als~~~~~~~PI~fig--~GE~~~dle 283 (461)
-.....+.|+.+|+ +|+.+++|.
T Consensus 125 ---~~~~~~~~~vi~ISA~~g~Gi~~L~ 149 (157)
T cd04164 125 ---LLSLLAGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred ---HHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf ---7985289977999852795999999
No 175
>PRK05748 replicative DNA helicase; Provisional
Probab=97.15 E-value=0.035 Score=36.85 Aligned_cols=114 Identities=23% Similarity=0.212 Sum_probs=66.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC----HHHHHHH
Q ss_conf 4189962344333468899999999861489507820542210047799--998510347422233210----3689999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ----SPEKIAI 173 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~----dp~~i~~ 173 (461)
-..|.+.|-.|.|||+.+--+|.....+.+++|++.+..-- .+|| +.+|...+||......+. +-..+ .
T Consensus 203 g~LiviaaRP~mGKTa~alnia~~~a~~~~~~v~~fSlEM~----~~~l~~R~la~~s~v~~~~i~~g~l~~~~~~~~-~ 277 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG----AESLVMRMLCAEGRIDQQKLRTGQLTDEDWPKL-T 277 (448)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHH-H
T ss_conf 73799984799876899999999999856980899817788----889999999997467777776289999999999-9
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 99999974158869983344222112468999999851385110003101
Q gi|254780711|r 174 RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 174 ~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
.+++... +..+.|-||++- ..+ ++....+++.+.- +.--++|+|-
T Consensus 278 ~a~~~l~--~~~l~i~d~~~~-ti~-~i~~~~r~~~~~~-~~~~~vviDY 322 (448)
T PRK05748 278 IAVGSLS--DAPIYIDDTPGI-KVT-EIRARCRRLAQEH-GGLGLIVIDY 322 (448)
T ss_pred HHHHHHH--CCCEEEECCCCC-CHH-HHHHHHHHHHHHC-CCCCEEEEEH
T ss_conf 9999986--598378558988-689-9999999999975-9988999716
No 176
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.13 E-value=0.036 Score=36.73 Aligned_cols=210 Identities=20% Similarity=0.241 Sum_probs=115.0
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99998718774210002588418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT 159 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~ 159 (461)
+|++..|.....--.+.-+-|.=|||+|+.|+|||.- |+-....-+ |-+.++ .+-+|
T Consensus 165 ~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlL----AkAvAgEa~--vpF~~~-----------------sgsef 221 (644)
T PRK10733 165 AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLL----AKAIAGEAK--VPFFTI-----------------SGSDF 221 (644)
T ss_pred HHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHH----HHHHHCCCC--CEEEEE-----------------EHHHH
T ss_conf 9999981297999974997998517779899877899----999864559--808997-----------------84773
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC---CCCCCC-------H--HHHHHHHHHHHHHCCCCCCCCCCCHHCCH
Q ss_conf 22332103689999999999741588699833---442221-------1--24689999998513851100031011122
Q gi|254780711|r 160 LEVIPEQSPEKIAIRATQSARDGGYDAVILDT---AGRNHI-------N--DSLMQEISEIKSLTNPHEILLVADALTGQ 227 (461)
Q Consensus 160 ~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDT---aGR~~~-------d--~~lm~El~~i~~~~~p~e~~lV~da~~Gq 227 (461)
.....|..+.. +++-.+.|++..--+|+||- -||... | +..+.+|-.=.+-..+.+-++|+-||.--
T Consensus 222 ~e~~vGvga~r-VR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaATNrp 300 (644)
T PRK10733 222 VEMFVGVGASR-VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 300 (644)
T ss_pred HHEEEECCHHH-HHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 02225306899-99999999966997999953220366678988898328887899999995488887876999626997
Q ss_pred HHHHHHH----HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC--CCHH
Q ss_conf 5688889----887635844077641157663303677788847873026158672321001368899877358--6278
Q gi|254780711|r 228 DAVHLAR----NFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM--GDVV 301 (461)
Q Consensus 228 ~a~~~a~----~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm--gD~~ 301 (461)
+.++-|- .|... |.+..-|-. |=..+=-+|.-++|+. ...+.+.+|.+--|+ -|+.
T Consensus 301 d~LD~ALlRPGRFDr~-----I~V~lPd~~--~R~~ILkvh~~~~~l~-----------~dvdl~~lA~~T~GfSGADLa 362 (644)
T PRK10733 301 DVLDPALLRPGRFDRQ-----VVVGLPDVR--GREQILKVHMRRVPLA-----------PDIDAAIIARGTPGFSGADLA 362 (644)
T ss_pred CCCCHHHHCCCCCCEE-----EEECCCCHH--HHHHHHHHHHCCCCCC-----------CCCCHHHHHCCCCCCCHHHHC
T ss_conf 5547777168886559-----997798988--9999999996488777-----------311589884459986703332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 899987421126789988865310463799999999998
Q gi|254780711|r 302 SLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQT 340 (461)
Q Consensus 302 ~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i 340 (461)
.|+..| ..++-|-.+...+..||.+.+..+
T Consensus 363 NlvNEA---------Al~AaR~~k~~It~~d~e~A~drV 392 (644)
T PRK10733 363 NLVNEA---------ALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred CHHHHH---------HHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 599999---------999987087543076689988885
No 177
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.13 E-value=0.0057 Score=42.87 Aligned_cols=92 Identities=21% Similarity=0.206 Sum_probs=63.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 02588418996234433346889999999986148950782054221004779999851034742223321036899999
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR 174 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~ 174 (461)
+...+. -|+|+|+.|+|||--+.-+|+.+.. .|++|..+++.. -+++|+.- .. . ++ -. +
T Consensus 43 ~i~~~~-Nlll~G~~GtGKThLA~Ai~~~~~~-~g~~v~f~~~~~----L~~~l~~~-~~-------~--~~-~~----~ 101 (178)
T pfam01695 43 WIEQAE-NLLLLGPPGVGKTHLACALGHQACR-AGYSVLFTRTPD----LVEQLKRA-RG-------D--GR-LA----R 101 (178)
T ss_pred CHHCCC-CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECHH----HHHHHHHH-HH-------C--CC-HH----H
T ss_conf 421587-6899899998789999999999998-698599996167----99999987-52-------6--74-99----9
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99999741588699833442221124689999998
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIK 209 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~ 209 (461)
.+. +-..+|++|||.-|..+.+++-.+.|-++.
T Consensus 102 ~l~--~~~~~dlLIiDDlG~~~~s~~~~~~lf~li 134 (178)
T pfam01695 102 TLQ--RLAKADLLILDDIGYLPLSQEAAHLLFELI 134 (178)
T ss_pred HHH--HHHCCCEEEEEHHCCCCCCHHHHHHHHHHH
T ss_conf 999--962589788720016568989999999999
No 178
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.12 E-value=0.012 Score=40.36 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=62.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 189962344333468899999999861489507820542210047799998510347422233-2103689999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-PEQSPEKIAIRATQSA 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-~~~dp~~i~~~a~~~a 179 (461)
.++.+.|+.+|||||.+..+.+..++.++ .|+++ |+-.+-- ..|++.+||+.=... ...|..+-+.+.++..
T Consensus 53 Ri~ei~G~essGKTtlal~~ia~aQk~gg-~~~~i--D~E~a~d----~~~a~~lGVD~~~l~~~qpd~~Eqal~i~~~l 125 (322)
T pfam00154 53 RIIEIYGPESSGKTTLALHAIAEAQKAGG-TAAFI--DAEHALD----PVYAKKLGVDIDNLLVSQPDTGEQALEIADML 125 (322)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEE--EHHHHCC----HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHH
T ss_conf 08999889877789999999999973499-38998--5366059----88999809880253897788399999999998
Q ss_pred HH-CCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 74-158869983344222112468999
Q gi|254780711|r 180 RD-GGYDAVILDTAGRNHINDSLMQEI 205 (461)
Q Consensus 180 ~~-~~~D~iiiDTaGR~~~d~~lm~El 205 (461)
.. ...|+|++|..|-+....++-.++
T Consensus 126 i~~~~~~liViDSvaal~p~~E~e~~~ 152 (322)
T pfam00154 126 VRSGAVDLIVVDSVAALVPKAEIEGEM 152 (322)
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 537997659982534567688875243
No 179
>PRK07263 consensus
Probab=97.11 E-value=0.039 Score=36.54 Aligned_cols=117 Identities=24% Similarity=0.233 Sum_probs=69.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 4189962344333468899999999861489507820542210047799--99851034742223321036899999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQSPEKIAIRATQ 177 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~dp~~i~~~a~~ 177 (461)
-..|.+.|-.|.|||+.+--+|.....+.+++|++.+..-- -+|| +.+|...+|+......+.-... -+..+.
T Consensus 203 GdLiviaaRPsmGKTa~alnia~~iA~~~~~~V~~fSlEMs----~~ql~~R~la~~~~i~~~~i~~g~l~~~-e~~~~~ 277 (453)
T PRK07263 203 DQLIILAARPAVGKTAFVLNIAQNVGTKQKKTVAIFSLEMG----AESLVDRMLAAEGMVDSHSLRTGQLTDQ-DWNNVT 277 (453)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHCCCCHHCCCCCCCCHH-HHHHHH
T ss_conf 86899972788847899999999999855982899924699----8999999999861733103313652479-999999
Q ss_pred HHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 997--4158869983344222112468999999851385110003101
Q gi|254780711|r 178 SAR--DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 178 ~a~--~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
.+. ..+..+.|-||++-. .. ++....+++.+.....--++|+|-
T Consensus 278 ~a~~~l~~~~l~idd~~~~~-i~-~i~~~~r~~~~~~~~~l~livIDY 323 (453)
T PRK07263 278 IAQGALAEAPIYIDDTPGIK-IT-EIRARSRKLSQEVDGGLGLIVIDY 323 (453)
T ss_pred HHHHHHCCCCEEEECCCCCC-HH-HHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 99987406858997899999-89-999999999986058986899736
No 180
>PRK05480 uridine kinase; Provisional
Probab=97.11 E-value=0.00083 Score=49.25 Aligned_cols=41 Identities=34% Similarity=0.432 Sum_probs=35.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 58841899623443334688999999998614895078205422
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
.++|.+|.++|..||||||.+-+|+..|.. .+|.++++|-|
T Consensus 3 ~k~P~iIgIaG~SgSGKTT~a~~L~~~l~~---~~v~vi~~D~Y 43 (209)
T PRK05480 3 MKQPIIIGIAGGSGSGKTTVASTIYEELGD---ESIAVISQDSY 43 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCC---CCEEEEECCCC
T ss_conf 889889999899977899999999998086---87599955441
No 181
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.0018 Score=46.64 Aligned_cols=216 Identities=15% Similarity=0.161 Sum_probs=110.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf 5884189962344333468899999999861489507820542210047799998510347422233210-368999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA 175 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a 175 (461)
..-|+.+||+|+.|+||||++-=+|+.+--. +.....-.|..-+. +..-.++++.....+ .-++-+++-
T Consensus 37 gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~-~~~d~~~pC~~C~~---------~~~~s~DViEIDAASn~gVDdIReL 106 (718)
T PRK07133 37 GKISHAYLFSGPHGTGKTSVAKIFANALNCS-HKTDLIEPCQNCIE---------NFNNNLDIIEMDAASNNGVDEIREL 106 (718)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHH---------CCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 9975058623899868899999999996799-99999997702143---------0478987377545566888999999
Q ss_pred ---HHHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH---------
Q ss_conf ---9999-7415886998334422211246899999985138511000310111225-----688889887---------
Q gi|254780711|r 176 ---TQSA-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD--------- 237 (461)
Q Consensus 176 ---~~~a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~--------- 237 (461)
+.+. ....|-|.|||-+-++.... ..-|-+..+. .|.+++|++ |+|--+ .+..++.|+
T Consensus 107 ie~v~y~P~~gkYKVyIIDEvHMLS~~A--fNALLKtLEE-PP~hvvFIL-aTTep~KIP~TIlSRCQrFdFkrI~~~~I 182 (718)
T PRK07133 107 RENVKNLPQISKYKIYIIDEVHMLSKSA--FNALLKTLEE-PPKHVIFIL-ATTDVQKIPLTILSRVQRFNFRRISEDVI 182 (718)
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCHHH--HHHHHHHHCC-CCCCCEEEE-EECCHHHCCHHHHHCCEEEECCCCCHHHH
T ss_conf 9982558877872499996620079999--9999985027-987827999-70882548487741220335888999999
Q ss_pred ----------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf ----------635844----077641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r 238 ----------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 238 ----------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l 303 (461)
+.+.++ .+|..+-||+-| -|||+... +...|.|.=- ..=+..+||.-+...+
T Consensus 183 ~~~L~~I~~kE~I~~e~eAL~lIA~~a~GSmR--DAlSlLDQ----v~~f~ng~it--------~k~v~~~~Gl~~~~~~ 248 (718)
T PRK07133 183 VHQLENILEKEKIKYEKNALKLIASLASGSLR--DALSIADQ----VSIFGNGNIT--------LKNVNELFGLVSNEIV 248 (718)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH----HHHHCCCCCC--------HHHHHHHHCCCCHHHH
T ss_conf 99999999985997789999999997688488--89879999----9985489872--------9999999676557999
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 998742112--6789988865310463799999999998
Q gi|254780711|r 304 VEKAARNLN--EKQAALTAKKIAKGKFDLEDLAEQFRQT 340 (461)
Q Consensus 304 ~e~~~~~~d--~~~~~~l~~k~~~g~F~l~Df~~Ql~~i 340 (461)
++-...... .++.-.....+..+-.+.+-|...+-.+
T Consensus 249 i~~~n~~~~~~~~~~l~~l~~~~~~gid~~~l~~~li~~ 287 (718)
T PRK07133 249 INFLNLLYSKNIKEVLEKLNQLKFQGIDPELLVISLINL 287 (718)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999986169999999999997588999999999999
No 182
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.09 E-value=0.00076 Score=49.53 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=40.9
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf 258841899623443334688999999998614895078205422100
Q gi|254780711|r 96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA 143 (461)
Q Consensus 96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a 143 (461)
...+|.||-|+|+.||||||-+-+|...+.+ .+.++.++-.|.+|.+
T Consensus 20 ~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~-~~~~~~~LDGD~lR~~ 66 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVHTYLLDGDNVRHG 66 (198)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECHHHHHHH
T ss_conf 6899869998799999889999999999997-5997599777999874
No 183
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.08 E-value=0.0094 Score=41.22 Aligned_cols=109 Identities=19% Similarity=0.165 Sum_probs=63.1
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEECC-CCCCCHHHHHHHHHH-H
Q ss_conf 999871877421000258841899623443334688999999998614-----895078205-422100477999985-1
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLK-----KKKILMASL-DVHRPAAQEQLRYLG-E 153 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~-----~~kV~lv~~-Dt~R~aA~eQL~~~a-~ 153 (461)
+|-.+|++.- . . -.+.-++|..|+|||+.|..+|...++.+ +.+|+.+.+ ++|.+-=++|+-.-. .
T Consensus 7 ~lD~~LgGGi---p--~--G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~~~~~~ 79 (226)
T cd01393 7 ALDELLGGGI---P--T--GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL 79 (226)
T ss_pred HHHHHHCCCC---C--C--CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 8998857998---8--8--8399999999998999999999998542211699961999955775319999999876032
Q ss_pred -----CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf -----0347422233210368999999999974158869983344222
Q gi|254780711|r 154 -----QIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNH 196 (461)
Q Consensus 154 -----~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~ 196 (461)
.-++-++......+..+++..........+.++|+||...-+.
T Consensus 80 ~~~~~l~~i~~~~~~~~e~~~~~~~~l~~~~~~~~v~liViDSi~al~ 127 (226)
T cd01393 80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALF 127 (226)
T ss_pred CHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEC
T ss_conf 667764333684379999999999999987524784289993220011
No 184
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.07 E-value=0.0036 Score=44.36 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=59.2
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 02588418996234433346889999999986148950782054221004779999851034742223321036899999
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR 174 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~ 174 (461)
+.-.+-.++.++|+|||||||++-=|+-.+.-..| .|.+-..|.......+ +.+.++.++..-++..--.+
T Consensus 21 l~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G-~i~i~G~~i~~~~~~~-----~~~~gi~~v~qLSgG~~Qrv--- 91 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG-EILVDGKEVSFASPRD-----ARRAGIAMVYQLSVGERQMV--- 91 (163)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHH-----HHHCCCCEECCCCHHHHHHH---
T ss_conf 89879989999988998999999999577689857-8999999999999999-----99879948946998999999---
Q ss_pred HHHHHHHCCCCEEEEE--CCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9999974158869983--3442221124689999998513
Q gi|254780711|r 175 ATQSARDGGYDAVILD--TAGRNHINDSLMQEISEIKSLT 212 (461)
Q Consensus 175 a~~~a~~~~~D~iiiD--TaGR~~~d~~lm~El~~i~~~~ 212 (461)
++..|-..+-+++|.| |+| .|....+++.++.+..
T Consensus 92 ~iaral~~~p~llilDEPt~g---LD~~~~~~i~~~l~~l 128 (163)
T cd03216 92 EIARALARNARLLILDEPTAA---LTPAEVERLFKVIRRL 128 (163)
T ss_pred HHHHHHHHCCCEEEEECCCCC---CCHHHHHHHHHHHHHH
T ss_conf 999999729999999097557---9999999999999999
No 185
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=97.07 E-value=0.0052 Score=43.17 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=90.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH--------H
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742223321036--------8
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSP--------E 169 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp--------~ 169 (461)
..+.||.||||.+.|||+.+-||++||.- .|.++-+-.+..||=... +...+.+||... ..+. .
T Consensus 11 ~~klvIvmVGLPARGKS~ia~kl~RYL~W-~g~~~kvFn~G~yRR~~~------~~~~~~~ffdp~-n~~~~~~R~~~a~ 82 (223)
T pfam01591 11 NSKTMIVMVGLPARGKTYISKKLTRYLNW-LGVPTKVFNVGEYRRSAV------KAYSNYEFFRPD-NTEAMKIREQCAL 82 (223)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECHHHHHHHC------CCCCCCCCCCCC-CHHHHHHHHHHHH
T ss_conf 89889999899999889999999999865-699805842637887631------899994113899-9899999999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCC--------------------HHCCHH
Q ss_conf 99999999997415886998334422-211246899999985138511000310--------------------111225
Q gi|254780711|r 170 KIAIRATQSARDGGYDAVILDTAGRN-HINDSLMQEISEIKSLTNPHEILLVAD--------------------ALTGQD 228 (461)
Q Consensus 170 ~i~~~a~~~a~~~~~D~iiiDTaGR~-~~d~~lm~El~~i~~~~~p~e~~lV~d--------------------a~~Gq~ 228 (461)
..+.+.+.++.+++.+|-|.|-.--. ..-..++++.++. +..++||=. --.|.+
T Consensus 83 ~~l~dl~~~l~~~~G~VaI~DATN~T~~RR~~i~~~~~~~-----~~~vlFiEsic~D~~ii~~NI~~~~~~spDY~~~~ 157 (223)
T pfam01591 83 AALKDVLAYLNEESGQVAIFDATNTTRERRKNILDFAEEN-----GLKVFFLESICDDPEIIARNIKLVKFSSPDYKGKP 157 (223)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHC-----CCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999858982999968876899999999999866-----97499999973888999999999984599746889
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC--CCCCCCCHHHHHHHHHC
Q ss_conf 688889887635844077641157663303677788847873026158672--32100136889987735
Q gi|254780711|r 229 AVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI--NDLENFFPDRIANRILG 296 (461)
Q Consensus 229 a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~--~dle~F~p~~~~~riLG 296 (461)
.-.-.+.|.+.+..---+-.-+|..--- -| .=|+.|-.||++ .-++-|-|.|++.-|+-
T Consensus 158 ~e~A~~DF~~Ri~~ye~~Yepl~~~~d~--~l-------syIK~in~g~~~~vn~i~GyL~srIv~~LmN 218 (223)
T pfam01591 158 PEEAIDDFMKRLECYEKQYEPLDDEHDE--DL-------SYIKVINVGQSIVVNNVQGYLQSRIVYYLMN 218 (223)
T ss_pred HHHHHHHHHHHHHHHHCCEECCCCCCCC--CC-------CEEEEEECCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 9999999999999753424238834336--87-------5699997898899978547618889998140
No 186
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.05 E-value=0.0098 Score=41.10 Aligned_cols=100 Identities=29% Similarity=0.376 Sum_probs=72.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99998718774210002588418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT 159 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~ 159 (461)
.||-++||+.-. + -.+||+-|-.|.||+|-.-.+|..+.+ .+.+|+-|+.-- ..+|++.=|+++++.-
T Consensus 69 ~ElDRVLGGGiV-----p--GSvvLlgGePGIGKSTLLLQia~~la~-~~~~vLYvSGEE----S~~QIk~RA~RLg~~~ 136 (372)
T cd01121 69 EELDRVLGGGLV-----P--GSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEE----SPEQIKLRADRLGIST 136 (372)
T ss_pred HHHHHHHCCCCC-----C--CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECHH----HHHHHHHHHHHHCCCC
T ss_conf 666540057730-----6--717998259988688999999999986-399389982456----7899998999858788
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf --223321036899999999997415886998334422
Q gi|254780711|r 160 --LEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN 195 (461)
Q Consensus 160 --~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~ 195 (461)
+....+.|.-.| ++.....+.|+++||.-=-.
T Consensus 137 ~~l~l~set~le~I----l~~i~~~kP~~lIIDSIQT~ 170 (372)
T cd01121 137 ENLYLLAETNLEDI----LASIEELKPDLVIIDSIQTV 170 (372)
T ss_pred CCCEEEECCCHHHH----HHHHHHHCCCEEEEECHHHC
T ss_conf 77278843569999----99999719988999562202
No 187
>PRK13695 putative NTPase; Provisional
Probab=97.05 E-value=0.004 Score=44.08 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=60.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEEC----------------CCCCCCHHHHHHHHHHH--CCCCCCC
Q ss_conf 418996234433346889999999986148950-7820----------------54221004779999851--0347422
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKI-LMAS----------------LDVHRPAAQEQLRYLGE--QIQVDTL 160 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV-~lv~----------------~Dt~R~aA~eQL~~~a~--~~~v~~~ 160 (461)
+-.|.+.|..|+||||-+-|++..++.. +.+| ++.+ .|+-+-+- |..... ...|.=|
T Consensus 3 ~~kI~iTG~PGvGKTTli~Kv~~~L~~~-g~~v~GF~T~Evre~G~R~GF~vv~l~~g~~~~---lA~~~~~~~~~VgkY 78 (174)
T PRK13695 3 ALRIGITGMPGVGKTTLVLKIAELLARE-GYKVGGFITEEVREGGKRIGFKIIDLDTGEEGI---LARVGAVSRPRVGKY 78 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEEEEEECCCEEEEEEEEECCCCCEEE---EEECCCCCCCCCCCE
T ss_conf 4299987899988999999999998636-961746995256038828505999905885687---675378898554566
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCC
Q ss_conf 2332103689999999999741588699833442221124689999998513851-100031
Q gi|254780711|r 161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVA 221 (461)
Q Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~ 221 (461)
.. .-.+--.++-.++..+. ..+|+++||--|.+......+.+ .+.++.+.+ -++.|+
T Consensus 79 ~V-~~~~~e~~~~~~l~~a~-~~~dlivIDEIG~MEl~s~~F~~--~V~~~L~s~kpvl~ti 136 (174)
T PRK13695 79 VV-NLEDLERIAIPAISRAL-READLIIIDEIGPMELKSKKFVS--AVEEVLKSEKPVIATV 136 (174)
T ss_pred EE-EHHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHHH--HHHHHHCCCCCEEEEE
T ss_conf 87-16897899899998353-57879999631033110499999--9999973899899997
No 188
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.05 E-value=0.011 Score=40.60 Aligned_cols=94 Identities=19% Similarity=0.273 Sum_probs=61.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223-32103689999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV-IPEQSPEKIAIRATQSA 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~-~~~~dp~~i~~~a~~~a 179 (461)
.++-+.|+.+|||||.+..+++..++.++ .|+.+ |+-. |++ ..|++.+||+.=.. ....|-.+-+.+.++..
T Consensus 56 Rivei~G~essGKTtlal~~ia~aQk~gg-~~~~i--DaE~--a~d--~~~a~~lGVD~~~l~~~qp~~~Eq~l~i~~~l 128 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGG-TVAFI--DAEH--ALD--PVYAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEE--EHHH--CCC--HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHH
T ss_conf 08999889877799999999999873598-39999--6254--259--89999809984675896663899999999997
Q ss_pred H-HCCCCEEEEECCCCCCCHHHH
Q ss_conf 7-415886998334422211246
Q gi|254780711|r 180 R-DGGYDAVILDTAGRNHINDSL 201 (461)
Q Consensus 180 ~-~~~~D~iiiDTaGR~~~d~~l 201 (461)
. ....|+|++|.-+-+....++
T Consensus 129 i~s~~~dliViDSvaal~p~~E~ 151 (325)
T cd00983 129 VRSGAVDLIVVDSVAALVPKAEI 151 (325)
T ss_pred HCCCCCCEEEECCCCCCCCHHHH
T ss_conf 51588767998151123657887
No 189
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.05 E-value=0.0027 Score=45.35 Aligned_cols=143 Identities=22% Similarity=0.303 Sum_probs=101.8
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC----HHHH
Q ss_conf 025884189962344333468899999999861489507820542210047799998510347422233210----3689
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ----SPEK 170 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~----dp~~ 170 (461)
+...+..++=|+|-.||||||-+-|+...++. ..|+++|..|..=-.=.+-|+.+ |+|+....+|+ |+-=
T Consensus 29 ~~~~g~~~lNfmsspGSGKT~LiEk~~~~~~~--~~K~Avi~GD~~t~~DA~RlR~~----G~~a~~~nTGk~CHLdA~m 102 (225)
T TIGR00073 29 FDKEGLLVLNFMSSPGSGKTTLIEKLIERLDD--EVKIAVIEGDVQTKNDADRLRKY----GVPAIQINTGKECHLDAHM 102 (225)
T ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHHC----CCEEEEECCCCCCCCHHHH
T ss_conf 98659789980258861158999999998457--89789997553225569999864----9868863688644401667
Q ss_pred HH--HHHHHHHHHCCC-CEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHH-HHHHHHHHCCCCC
Q ss_conf 99--999999974158-86998334422--211246899999985138511000310111225688-8898876358440
Q gi|254780711|r 171 IA--IRATQSARDGGY-DAVILDTAGRN--HINDSLMQEISEIKSLTNPHEILLVADALTGQDAVH-LARNFDKIVDLTG 244 (461)
Q Consensus 171 i~--~~a~~~a~~~~~-D~iiiDTaGR~--~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~-~a~~F~~~~~i~g 244 (461)
|+ +++++....... |++||-=-|=| +.+-+| -.+..+-|++.|=|-|-+. --..|..+ +-
T Consensus 103 v~G~~~~L~~~~ld~~~DlL~IENVGNLvCP~~FdL-----------Ge~~rVvllSVTEGdDk~lKyP~~F~~A---d~ 168 (225)
T TIGR00073 103 VAGAIHALKDLPLDDISDLLLIENVGNLVCPADFDL-----------GEHMRVVLLSVTEGDDKVLKYPAMFKEA---DL 168 (225)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCEECCCCCC-----------CCCCEEEEEEECCCCCCCCCCCHHHHHH---HH
T ss_conf 865875542168887146268864476100673112-----------3563079998658999654661588744---45
Q ss_pred EEEEECCCCCCCC
Q ss_conf 7764115766330
Q gi|254780711|r 245 IILTRMDGDGRGG 257 (461)
Q Consensus 245 iIlTKlD~~akgG 257 (461)
+++||.|=-.-.|
T Consensus 169 ~~inK~DL~~~v~ 181 (225)
T TIGR00073 169 ILINKVDLAEAVG 181 (225)
T ss_pred HHHCHHHHHHHHC
T ss_conf 6214788997707
No 190
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.05 E-value=0.016 Score=39.36 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 88418996234433346889999999986
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKT 126 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~ 126 (461)
.+.+ .++||-.|+|||.-+=-||.....
T Consensus 198 ~KNN-piLvGepGVGKTAIvEGLA~rI~~ 225 (857)
T PRK10865 198 TKNN-PVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCC-CEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 7899-758789998899999999999983
No 191
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.05 E-value=0.0063 Score=42.56 Aligned_cols=194 Identities=19% Similarity=0.229 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99999999998718774210002588418996234433346889999999986148950782054221004779999851
Q gi|254780711|r 74 VIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE 153 (461)
Q Consensus 74 i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~ 153 (461)
+++.=++||-+-||+.- .-|+.+++-|-+|+|||--+..+|+-+.. ++++|..+++..-=-.=+.|...++-
T Consensus 9 ii~~gndelDkrLGGGi-------P~GsL~lIEGd~~tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T~refi~qm~sl~y 80 (235)
T COG2874 9 IIKSGNDELDKRLGGGI-------PVGSLILIEGDNGTGKSVLSQRFAYGFLM-NGYRVTYVSTELTVREFIKQMESLSY 80 (235)
T ss_pred HCCCCCHHHHHHCCCCC-------CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECHHHHHHHHHHHHCCC
T ss_conf 20678477786516997-------46769999888985488999999998870-89548999840359999998886388
Q ss_pred CCC------------CCCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEECCCCCCCHH------HHHHHHHHHHHHCCC
Q ss_conf 034------------742223321036-8999999999974158869983344222112------468999999851385
Q gi|254780711|r 154 QIQ------------VDTLEVIPEQSP-EKIAIRATQSARDGGYDAVILDTAGRNHIND------SLMQEISEIKSLTNP 214 (461)
Q Consensus 154 ~~~------------v~~~~~~~~~dp-~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~------~lm~El~~i~~~~~p 214 (461)
-+. +.+++...+..+ -.....-++.-+....||||||+---....+ +.|..++++...-+
T Consensus 81 dv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gK- 159 (235)
T COG2874 81 DVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGK- 159 (235)
T ss_pred CCHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCC-
T ss_conf 7168775062689993245422573778999999975577523778999534377652649999999999999872897-
Q ss_pred CCCCCCCCHHCCHHHHHHHHHH--HHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHH
Q ss_conf 1100031011122568888988--76358440776411576633036777888478730261586723210013688
Q gi|254780711|r 215 HEILLVADALTGQDAVHLARNF--DKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDR 289 (461)
Q Consensus 215 ~e~~lV~da~~Gq~a~~~a~~F--~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~ 289 (461)
-+++.++ |.+++..-.+ ... -|..+ +|--..-||-..+... -++|.|..+.+.+.-+|+.+.
T Consensus 160 -vIilTvh----p~~l~e~~~~rirs~--~d~~l--~L~~~~~Gg~~~~~~~----i~K~~ga~~s~~~~I~F~V~P 223 (235)
T COG2874 160 -VIILTVH----PSALDEDVLTRIRSA--CDVYL--RLRLEELGGDLIKVLE----IVKYRGARKSFQNIISFRVEP 223 (235)
T ss_pred -EEEEEEC----HHHCCHHHHHHHHHH--HHEEE--EEEHHHHCCEEEEEEE----EEEECCCHHHCCCCEEEEECC
T ss_conf -8999947----343378999999875--20258--9870231784558778----766547133217740588559
No 192
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0098 Score=41.07 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=67.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
-.++=+.|+-||||||-|--++...++.+++.+-+=+.-+|||.=+.|+-..- .-++.++......+...++.......
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~-~d~l~v~~~~~~e~q~~i~~~~~~~~ 138 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL-LDNLLVSQPDTGEQQLEIAEKLARSG 138 (279)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH-HCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 35899846887654668999988865379808999589998999999988754-21536866897799999999998754
Q ss_pred HHCCCCEEEEECCCCCCC
Q ss_conf 741588699833442221
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHI 197 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~ 197 (461)
.. .+|+|+||...-+..
T Consensus 139 ~~-~i~LvVVDSvaa~~r 155 (279)
T COG0468 139 AE-KIDLLVVDSVAALVR 155 (279)
T ss_pred CC-CCCEEEEECCCCCCH
T ss_conf 68-878899825743463
No 193
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.03 E-value=0.0052 Score=43.15 Aligned_cols=143 Identities=21% Similarity=0.287 Sum_probs=72.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
||.++|-.-+||||-+-+|... . +| |.. .|+ +-|+.. |+. +..++ ..
T Consensus 2 vVaivG~~n~GKSTL~n~L~g~-------~-----~d--~~~-~e~------~~giTi-------~~~---~~~~~--~~ 48 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI-------E-----TD--RLP-EEK------KRGITI-------DLG---FAYLD--LP 48 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHCC-------C-----CC--CCH-HHH------CCCEEE-------EEE---EEEEE--CC
T ss_conf 9999926887299999998496-------4-----66--333-333------486379-------854---68786--48
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH--HHHHHHHHHHHCCCCC--EEEEECCCCCCCC
Q ss_conf 15886998334422211246899999985138511000310111225--6888898876358440--7764115766330
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD--AVHLARNFDKIVDLTG--IILTRMDGDGRGG 257 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~--a~~~a~~F~~~~~i~g--iIlTKlD~~akgG 257 (461)
.+.-+.+|||+| | +.+..++.. .+...|-++||+||.-|-. ..+..... +..++.. ++++|+|--.+-.
T Consensus 49 ~~~~i~~iDtPG--h--~~~~~~~~~--~~~~aD~~llVvda~~g~~~q~~e~~~~~-~~~~i~~~ivvlNK~D~v~~~~ 121 (164)
T cd04171 49 SGKRLGFIDVPG--H--EKFIKNMLA--GAGGIDLVLLVVAADEGIMPQTREHLEIL-ELLGIKRGLVVLTKADLVDEDW 121 (164)
T ss_pred CCCEEEEEECCC--H--HHHHHHHHH--HHHHCCEEEEEEECCCCCCHHHHHHHHHH-HHCCCCCEEEEEECCCCCCHHH
T ss_conf 998999994878--7--999999999--87426725899861778888899999999-8738872787346342579789
Q ss_pred HHH---HHHH------HHCCCHHHEE--CCCCCCCCCC
Q ss_conf 367---7788------8478730261--5867232100
Q gi|254780711|r 258 AAL---SMRT------VTGKPIKAIG--TGEKINDLEN 284 (461)
Q Consensus 258 ~al---s~~~------~~~~PI~fig--~GE~~~dle~ 284 (461)
... .+.. ..+.||.+++ +|+.+++|..
T Consensus 122 ~~~~~~~i~~~l~~~~~~~~pii~iSA~tG~Gi~eL~~ 159 (164)
T cd04171 122 LELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 99999999999974399998299946989829999999
No 194
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.02 E-value=0.00075 Score=49.58 Aligned_cols=152 Identities=15% Similarity=0.168 Sum_probs=81.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECC---CCC---CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 1899623443334688999999998614895078205---422---1004779999851034742223321036899999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASL---DVH---RPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR 174 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~---Dt~---R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~ 174 (461)
..|.++|--||||||.+=-|.+.-.. -.+.+-|.+ |.. =.-..|+-+ ++.+...
T Consensus 3 Rniai~gH~gaGKTtL~EalL~~~G~--i~r~G~V~~~~~~g~t~~D~~~eE~~R------~iSi~~~------------ 62 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGA--IREAGAVKARKSRKHATSDWMEIEKQR------GISVTSS------------ 62 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC--CCCCCEEEECCCCCCCCCCCHHHHHHC------CCEEECC------------
T ss_conf 17999847999989999999986686--333854630368886046887999865------9448636------------
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHH-HHHHHHHHHCCCC-CEEEEECCC
Q ss_conf 99999741588699833442221124689999998513851100031011122568-8889887635844-077641157
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAV-HLARNFDKIVDLT-GIILTRMDG 252 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~-~~a~~F~~~~~i~-giIlTKlD~ 252 (461)
+-.+.-+++.+=||||+|- .+...|...-.+++ |-.++|+||..|=++. ..+-.+.+..++- =++++|||-
T Consensus 63 -~~~~~w~~~kinliDTPG~----~DF~~e~~~al~v~--D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~iifINKmDr 135 (267)
T cd04169 63 -VMQFEYRDCVINLLDTPGH----EDFSEDTYRTLTAV--DSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDR 135 (267)
T ss_pred -EEEEEECCEEEEEEECCCC----HHHHHHHHHHHHHH--HCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf -3788789989999979697----78999999999886--4547995256665355899999999729997999853456
Q ss_pred -CCCCCHHH-HHHHHHCCCHHH----EECCCCC
Q ss_conf -66330367-778884787302----6158672
Q gi|254780711|r 253 -DGRGGAAL-SMRTVTGKPIKA----IGTGEKI 279 (461)
Q Consensus 253 -~akgG~al-s~~~~~~~PI~f----ig~GE~~ 279 (461)
.|..-.+| ++....+.++.= ||.|+.+
T Consensus 136 ~~adf~~~l~~i~~~lg~~~vpi~lPig~~~~f 168 (267)
T cd04169 136 EGRDPLELLDEIEEELGIDCTPLTWPIGMGKDF 168 (267)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCE
T ss_conf 789878999999998687751168775169944
No 195
>PRK08181 transposase; Validated
Probab=97.02 E-value=0.016 Score=39.38 Aligned_cols=143 Identities=16% Similarity=0.209 Sum_probs=76.2
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHH
Q ss_conf 9985246969999999999999830-31112699899999999-999998718774210002588418996234433346
Q gi|254780711|r 37 TFLEADVSLEVVQSFSKRVQEKAKG-EKILRSIQPGQMVIKIV-HDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKT 114 (461)
Q Consensus 37 aLLeaDV~~~vv~~~~~~Ik~k~~~-~~~~~~~~~~~~i~kiv-~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKT 114 (461)
.|++..+..+-.+.+-..++.--.. .+..+.++-. ....+ ...+..+.... .+...+- -|+|+|+.|+|||
T Consensus 48 ~Lle~E~~~R~~rr~~rrlk~A~fp~~ktLe~fDf~--~~p~i~~~~i~~L~~~~----~fi~~~~-Nvil~Gp~GtGKT 120 (269)
T PRK08181 48 AIAEHEIAERARRRIERHLAEAHLPPGKTLDSFDFE--AVPMISKAQVMALAAGD----SWLAKGA-NLLLFGPPGGGKS 120 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC--CCCCCCHHHHHHHHCCC----HHHHCCC-EEEEECCCCCCHH
T ss_conf 999999999999999999986897998886547855--68998999999996567----5886487-0899899998788
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 88999999998614895078205422100477999985103474222332103689999999999741588699833442
Q gi|254780711|r 115 TTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGR 194 (461)
Q Consensus 115 TT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR 194 (461)
--+.-||..... .|++|.+++++.. +++|+.- + ..++- ...+. +-..+|++|||--|-
T Consensus 121 hLA~Alg~~A~~-~G~~V~f~~~~~L----~~~L~~a-~---------~~~~~-----~~~~~--~l~~~dLLIiDe~G~ 178 (269)
T PRK08181 121 HLAAAIGLALIE-NGWRVLFTRTTDL----VQKLQVA-R---------RELQL-----ESAIA--KLDKFDLLILDDLAY 178 (269)
T ss_pred HHHHHHHHHHHH-CCCEEEEEEHHHH----HHHHHHH-H---------HCCCH-----HHHHH--HHHCCCEEEEHHCCC
T ss_conf 999999999998-7993999789999----9999997-7---------55839-----99999--974446012201056
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 22112468999999
Q gi|254780711|r 195 NHINDSLMQEISEI 208 (461)
Q Consensus 195 ~~~d~~lm~El~~i 208 (461)
.+.+.+-.+-|-++
T Consensus 179 ~~~~~~~~~~lf~l 192 (269)
T PRK08181 179 VTKDQAETSVLFEL 192 (269)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 67998999999999
No 196
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.01 E-value=0.0032 Score=44.78 Aligned_cols=120 Identities=23% Similarity=0.288 Sum_probs=64.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99623443334688999999998614-89507820542210047799998510347422233210368999999999974
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
|.++|--++||||.+..|........ ...+--...|.. ..||-+-.+-....-. +..
T Consensus 2 v~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~---~~E~~rgiTi~~~~~~-------------------~~~ 59 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVL---KEERERGITIKSGVAT-------------------FEW 59 (189)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCC---HHHHHCCCEEEEEEEE-------------------EEE
T ss_conf 899917998999999999976472356862588850577---7888638413222799-------------------998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-----HHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 158869983344222112468999999851385110003101112-----256888898876358440776411576
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-----QDAVHLARNFDKIVDLTGIILTRMDGD 253 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-----q~a~~~a~~F~~~~~i~giIlTKlD~~ 253 (461)
+.+-+.+|||+| | .+.+.+...-.. ..|-.+||+||..| ++.+..++.++ +++ =++++|+|--
T Consensus 60 ~~~~i~~iDTPG--h--~~f~~~~~~~l~--~aD~ailvVda~~G~~~qt~~~~~~~~~~~--~p~-iv~iNKiD~~ 127 (189)
T cd00881 60 PDRRVNFIDTPG--H--EDFSSEVIRGLS--VSDGAILVVDANEGVQPQTREHLRIAREGG--LPI-IVAINKIDRV 127 (189)
T ss_pred CCEEEEEEECCC--C--HHHHHHHHHHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEECCCCC
T ss_conf 998999996998--1--889999999986--468569999879899878999999999769--987-9999897187
No 197
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=97.00 E-value=0.00018 Score=54.31 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=67.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE-EEEEECCCCC
Q ss_conf 999999852469699999999999998303111269989999999999999871877421000258841-8996234433
Q gi|254780711|r 33 EIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPL-VIMLVGLQGS 111 (461)
Q Consensus 33 ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~-vIllvGl~Gs 111 (461)
|||-+-+=+-.+-+||-.+.++=..+..-+++ |.++. +.+.|-+++ ..|+ +||+.||+||
T Consensus 196 DiRVSt~Pt~fGERvVMRLLDK~~~~l~L~~L--Gm~~~------~l~~~~~li-----------~rpHGIiLVTGPTGS 256 (495)
T TIGR02533 196 DIRVSTVPTSFGERVVMRLLDKDAVRLDLEAL--GMSPE------LLSSLERLI-----------KRPHGIILVTGPTGS 256 (495)
T ss_pred EEEEEECCCCCCCEEEHHHHCHHHHHHHHHHC--CCCHH------HHHHHHHHH-----------HCCCCEEEECCCCCC
T ss_conf 67885305899710000011204777758864--88888------999999997-----------188961884177898
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 346889999999986148950782054--221004779999851034742223321036899999999997415886998
Q gi|254780711|r 112 GKTTTTAKIAYHLKTLKKKKILMASLD--VHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVIL 189 (461)
Q Consensus 112 GKTTT~aKLA~~~~~~~~~kV~lv~~D--t~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iii 189 (461)
|||||.===-+.| +...++++-|- | =|+.-++-|.+...+ +|..|- .|+...-.+.=|+|-|
T Consensus 257 GKtTTLYaaL~~L-N~~~~NIlTvE-DPVEY~i~GIgQ~Qvn~k-IglTFA-------------~GLRaILRQDPDiiMv 320 (495)
T TIGR02533 257 GKTTTLYAALSRL-NTPERNILTVE-DPVEYQIEGIGQIQVNPK-IGLTFA-------------AGLRAILRQDPDIIMV 320 (495)
T ss_pred CHHHHHHHHHHHH-CCCCCCEEEEE-CCEEEEECCCCEEEECCC-CCHHHH-------------HHHHHHHCCCCCEEEE
T ss_conf 5258899999863-58997156865-782476248763651465-430388-------------8878864279988998
No 198
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.00 E-value=0.0098 Score=41.07 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=92.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf 5884189962344333468899999999861489507820542210047799998510347422233210-368999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA 175 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a 175 (461)
..-|+.+||.|+.|+||||++--+|+.+--..+. .--.|+.-+ .-+........+++.....+ .-++-+++-
T Consensus 33 ~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~--~~~PCg~C~-----sC~~i~~g~hpDViEiDaasn~gID~IReL 105 (523)
T PRK08451 33 NRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGP--SSTPCGTCA-----QCQAALEGRHIDIIEMDAASNRGIDDIRNL 105 (523)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCCH-----HHHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 9967158757899868899999999997599999--989888788-----899986489998551055333689999999
Q ss_pred HHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHH----HHHHHHHH----------
Q ss_conf 99997----4158869983344222112468999999851385110003101112256----88889887----------
Q gi|254780711|r 176 TQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDA----VHLARNFD---------- 237 (461)
Q Consensus 176 ~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a----~~~a~~F~---------- 237 (461)
++.+. ...|-|+|||-|-++..+. ..-|-+..+.- |..++|++-.+--+.- ..-.+.|+
T Consensus 106 ie~~~~~P~~gryKV~IIDEah~Lt~~A--~NALLKTLEEP-P~~vvFILaTTep~KLp~TIlSRCQ~f~Fk~I~~~~I~ 182 (523)
T PRK08451 106 IEQTKYKPSMARFKIFIIDEVHMLTKEA--FNALLKTLEEP-PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSII 182 (523)
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCHHH--HHHHHHHCCCC-CCCCEEEEECCCHHHCHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 9972358867972799982603048999--99999970389-87837999759947684888742031103379999999
Q ss_pred ---------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf ---------635844----0776411576633036777888478730261586723210013688998773586278899
Q gi|254780711|r 238 ---------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLV 304 (461)
Q Consensus 238 ---------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~ 304 (461)
+.+.++ .+|...-||+-| -|||+-.. -|.|- .| +++ ..-+..+||.=|-..+.
T Consensus 183 ~~L~~I~~~E~i~~e~~AL~~IA~~a~GslR--DalslLdQ---~i~~~-~~-~i~-------~~~v~~~lG~~d~~~~~ 248 (523)
T PRK08451 183 SHLKTILNKEGVSYEPEALEILARSGSGSLR--DTLTLLDQ---AIIFC-KN-AIT-------ESKVADMLGLLDPSKIE 248 (523)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHHC-CC-CCC-------HHHHHHHHCCCCHHHHH
T ss_conf 9999999983998799999999997789486--89879999---99847-99-877-------99999985888999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9874211267
Q gi|254780711|r 305 EKAARNLNEK 314 (461)
Q Consensus 305 e~~~~~~d~~ 314 (461)
+-.+..++.+
T Consensus 249 ~l~~~i~~~d 258 (523)
T PRK08451 249 DFFQAILNKD 258 (523)
T ss_pred HHHHHHHHCC
T ss_conf 9999999458
No 199
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.00 E-value=0.0047 Score=43.50 Aligned_cols=119 Identities=20% Similarity=0.304 Sum_probs=62.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 62344333468899999999861489507820542210047799998510347422233210368999999999974158
Q gi|254780711|r 105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGY 184 (461)
Q Consensus 105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~ 184 (461)
++|..-+||||-+=+|. |.++.+|+-- |+. .+ -+.+.. ....++
T Consensus 2 ivG~pN~GKSsL~N~l~-------~~~~~ivs~~---~gt--------Tr--~~~~~~----------------~~~~~~ 45 (157)
T cd01894 2 IVGRPNVGKSTLFNRLT-------GRRDAIVEDT---PGV--------TR--DRIYGE----------------AEWGGR 45 (157)
T ss_pred CCCCCCCCHHHHHHHHH-------CCCCEEEECC---CCC--------EE--EEEEEE----------------EEECCE
T ss_conf 04899988999999995-------8875354079---993--------56--678999----------------999998
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHH-HHH-CCCCCCCCCCCHHCCHHHHH--HHHHHHHHCCCC-CEEEEECCCCCCCCHH
Q ss_conf 869983344222112468999999-851-38511000310111225688--889887635844-0776411576633036
Q gi|254780711|r 185 DAVILDTAGRNHINDSLMQEISEI-KSL-TNPHEILLVADALTGQDAVH--LARNFDKIVDLT-GIILTRMDGDGRGGAA 259 (461)
Q Consensus 185 D~iiiDTaGR~~~d~~lm~El~~i-~~~-~~p~e~~lV~da~~Gq~a~~--~a~~F~~~~~i~-giIlTKlD~~akgG~a 259 (461)
.++++||+|=......+-.++.+. ... -..|-+++|+||..|-...+ +.+...+ .+.- -+++.|.|--.+-...
T Consensus 46 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~i~~ad~il~viDa~~~~~~~d~~i~~~l~~-~~kp~i~v~NK~D~~~~~~~~ 124 (157)
T cd01894 46 EFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRK-SKKPVILVVNKVDNIKEEDEA 124 (157)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-HCCCEEEEEECCCCCCCHHHH
T ss_conf 8999857875556606789999999999986590799998999999899999999998-479809999787165864569
Q ss_pred H
Q ss_conf 7
Q gi|254780711|r 260 L 260 (461)
Q Consensus 260 l 260 (461)
.
T Consensus 125 ~ 125 (157)
T cd01894 125 A 125 (157)
T ss_pred H
T ss_conf 9
No 200
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.99 E-value=0.005 Score=43.30 Aligned_cols=82 Identities=18% Similarity=0.130 Sum_probs=45.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
+|++.|+.||||||.+..||..+ + ...+-.|.||+.+.-. .-..|+|........=-..+..........
T Consensus 1 liiv~GvsGsGKSTia~~La~~l----g--~~~i~~D~~h~~~n~~----km~~G~pL~d~dr~~wl~~l~~~~~~~~~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL----G--APFIDGDDLHPPANIA----KMAAGIPLNDEDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----C--CCEECCCCCCCHHHHH----HHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98999189999999999999971----9--9564154335476899----986799988523789999999999999984
Q ss_pred CCCCEEEEECCC
Q ss_conf 158869983344
Q gi|254780711|r 182 GGYDAVILDTAG 193 (461)
Q Consensus 182 ~~~D~iiiDTaG 193 (461)
.++.+|+-=|+-
T Consensus 71 ~g~~vVv~cSaL 82 (150)
T cd02021 71 AGEGVVVACSAL 82 (150)
T ss_pred CCCCEEEEEHHH
T ss_conf 499879984332
No 201
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.99 E-value=0.0036 Score=44.39 Aligned_cols=137 Identities=19% Similarity=0.327 Sum_probs=67.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ 177 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~ 177 (461)
++-..|+++|+.||||||-+.+|. . +..+-.. | .+|+.+...
T Consensus 13 ~k~~KililG~~~sGKTsil~~l~----~--~~~~~~~------p-----------T~G~~~~~i--------------- 54 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFL----L--GEVVHTS------P-----------TIGSNVEEI--------------- 54 (174)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH----C--CCCCCCC------C-----------CCCCCEEEE---------------
T ss_conf 977999999899998899999997----3--9927716------7-----------236046999---------------
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHHHHCC---CCC----EEEEE
Q ss_conf 997415886998334422211246899999985138511000310111225688889-8876358---440----77641
Q gi|254780711|r 178 SARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR-NFDKIVD---LTG----IILTR 249 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~~~~~---i~g----iIlTK 249 (461)
..+++.+.+-||+|+-... .+-..+ .-+.+-+++|+|++-- +.++.++ .+++.+. +.. |+.+|
T Consensus 55 --~~~~~~~~iwD~~G~e~~~-----~~~~~y-~~~a~~ii~VvD~sd~-~~~~~~~~~l~~~l~~~~~~~~pili~~NK 125 (174)
T cd04153 55 --VYKNIRFLMWDIGGQESLR-----SSWNTY-YTNTDAVILVIDSTDR-ERLPLTKEELYKMLAHEDLRKAVLLVLANK 125 (174)
T ss_pred --EECCEEEEEEECCCCCCCC-----CHHHHH-HCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf --9788899999899986566-----226777-0577537999976788-899999999999972610169828999955
Q ss_pred CCCC-CCC----CHHHHHHHHHCCCHHHEE----CCCCCCC
Q ss_conf 1576-633----036777888478730261----5867232
Q gi|254780711|r 250 MDGD-GRG----GAALSMRTVTGKPIKAIG----TGEKIND 281 (461)
Q Consensus 250 lD~~-akg----G~als~~~~~~~PI~fig----~GE~~~d 281 (461)
.|-. +.. -..+.+......|+.|.. +||.+++
T Consensus 126 ~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~Gv~e 166 (174)
T cd04153 126 QDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 55655789999999974777635980999966858919899
No 202
>PRK09183 transposase/IS protein; Provisional
Probab=96.98 E-value=0.008 Score=41.77 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=78.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHH
Q ss_conf 99985246969999999999999830-31112699899999999999998718774210002588418996234433346
Q gi|254780711|r 36 RTFLEADVSLEVVQSFSKRVQEKAKG-EKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKT 114 (461)
Q Consensus 36 ~aLLeaDV~~~vv~~~~~~Ik~k~~~-~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKT 114 (461)
..|+++-+..+-.+.+...+|.-... .+....++-. ...-+....+.-|. ...+...+- -|+|+|+.|+|||
T Consensus 43 ~~Ll~~E~~~R~~rr~~r~lk~A~fp~~ktle~fDf~--~~~~l~~~~i~~La----~~~fi~~~~-Nvil~G~~GtGKT 115 (258)
T PRK09183 43 EHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFT--FATGAPQKQLQSLR----SLSFIERNE-NIVLLGPSGVGKT 115 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC--CCCCCCHHHHHHHH----CCCHHHCCC-CEEEECCCCCCHH
T ss_conf 9999999999999999999997799998777555654--68862389999882----581665588-6799899998689
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 88999999998614895078205422100477999985103474222332103689999999999741588699833442
Q gi|254780711|r 115 TTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGR 194 (461)
Q Consensus 115 TT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR 194 (461)
--+.-||..... .|++|.++++.. -+++|+.- .. .++- . ..+.. .-..+|++|||--|-
T Consensus 116 hLA~Alg~~A~~-~G~~v~f~~~~~----L~~~L~~a-~~---------~~~~-~----~~l~r-~l~~~dLLIiDdlG~ 174 (258)
T PRK09183 116 HLAIALGYEAVR-AGIKVRFTTAAD----LLLQLSTA-QR---------QGRY-K----TTLQR-GVMAPRLLIIDEIGY 174 (258)
T ss_pred HHHHHHHHHHHH-CCCEEEEEEHHH----HHHHHHHH-HH---------CCCH-H----HHHHH-HHCCCCEEEEHHHHC
T ss_conf 999999999998-799399978999----99999999-87---------6859-9----99998-743465144313315
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 22112468999999
Q gi|254780711|r 195 NHINDSLMQEISEI 208 (461)
Q Consensus 195 ~~~d~~lm~El~~i 208 (461)
.+.+.+-.+-+-++
T Consensus 175 ~~~~~~~~~~lfel 188 (258)
T PRK09183 175 LPFSQEEANLFFQV 188 (258)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 46888899999999
No 203
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.98 E-value=0.0041 Score=43.97 Aligned_cols=94 Identities=26% Similarity=0.316 Sum_probs=54.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHHHH
Q ss_conf 8996234433346889999999986148950782054221004779999851034742223--32103689999999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV--IPEQSPEKIAIRATQSA 179 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~--~~~~dp~~i~~~a~~~a 179 (461)
.|+++|+.||||||-+.+||..+ +. +-+-+.|.||++-.++ ..++..+.--+-.. .+..-...++...+..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~----~i-~hlstgd~~r~~~~~~-t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~ 75 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL----GL-PHLDTGDILRAAIAER-TELGEEIKKYIDKGELVPDEIVNGLVKERLDEA 75 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC----CC-CEECCCCCCCHHHCCC-CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf 79998999998899999999976----99-7855220111100323-689999999987589504176997999999750
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 741588699833442221124689
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQ 203 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~ 203 (461)
+... .+|+|--.|...-...++
T Consensus 76 -d~~~-~~I~dg~PR~~~qa~~l~ 97 (178)
T COG0563 76 -DCKA-GFILDGFPRTLCQARALK 97 (178)
T ss_pred -CCCC-EEEEECCCCHHHHHHHHH
T ss_conf -6577-299989983699999999
No 204
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.96 E-value=0.0028 Score=45.28 Aligned_cols=115 Identities=20% Similarity=0.227 Sum_probs=61.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-HCC--CCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCC-CCCCCHHHHHHHHH
Q ss_conf 8996234433346889999999986-148--9507820542210047799--9985103474222-33210368999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKT-LKK--KKILMASLDVHRPAAQEQL--RYLGEQIQVDTLE-VIPEQSPEKIAIRA 175 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~-~~~--~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~-~~~~~dp~~i~~~a 175 (461)
+.++.|=.|.|||||+++|-+-+.. ..+ .+|. .+|=|-|+||-=+= ..-..++.++-.. .....++..| -+-
T Consensus 164 ~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~-LaAPTGKAAaRL~Esi~~~~~~l~~~~~~~~~~p~~a~Ti-HRL 241 (607)
T PRK10875 164 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL-HRL 241 (607)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEE-EECCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEH-HHH
T ss_conf 78996799987788999999999996458997089-9882289999999999878753476656663376556658-975
Q ss_pred HHH------HH---H--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCH
Q ss_conf 999------97---4--1588699833442221124689999998513851-10003101
Q gi|254780711|r 176 TQS------AR---D--GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADA 223 (461)
Q Consensus 176 ~~~------a~---~--~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da 223 (461)
+.. ++ . -.+|+||||-|-. .|-.||.. +.+++.|+ .++||-|.
T Consensus 242 Lg~~p~~~~f~~~~~nPL~~DvlIVDEASM--VDl~Lm~~---LL~Alp~~aRLILvGD~ 296 (607)
T PRK10875 242 LGAQPGSQRLRYHAGNPLHLDVLVVDEASM--IDLPMMSR---LIDALPDHARVIFLGDR 296 (607)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCHH--HHHHHHHH---HHHHCCCCCEEEEECCH
T ss_conf 296789876565779999889899907336--65999999---99828999889996562
No 205
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.015 Score=39.75 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=21.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 884189962344333468899999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHL 124 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~ 124 (461)
+-.+.+||.|..|+||||.+-=||+-+
T Consensus 36 r~~haylf~g~rg~gktt~ari~ak~l 62 (696)
T PRK06872 36 RLHHAYLFSGTRGVGKTSIARLFAKGL 62 (696)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 863047511789888889999999986
No 206
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.95 E-value=0.0017 Score=46.89 Aligned_cols=77 Identities=25% Similarity=0.313 Sum_probs=53.6
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 841-8996234433346889999999986148950782054--2210047799998510347422233210368999999
Q gi|254780711|r 99 SPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD--VHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA 175 (461)
Q Consensus 99 ~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D--t~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a 175 (461)
+|+ .|++.||+|||||||.-.+-.++.. ..+++.-|. | -|..-.+.|++...+ +|.+|- .+
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~-~~~nI~TiE-DPVE~~~~gI~Q~qVN~k-~gltfa-------------~~ 319 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNT-PERNIITIE-DPVEYQLPGINQVQVNPK-IGLTFA-------------RA 319 (500)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEE-CCEEEECCCCCEEECCCC-CCCCHH-------------HH
T ss_conf 89708999689999889999999998627-885089840-780451598515631403-599789-------------99
Q ss_pred HHHHHHCCCCEEEEEC
Q ss_conf 9999741588699833
Q gi|254780711|r 176 TQSARDGGYDAVILDT 191 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDT 191 (461)
+..+-.+.=|+|+|.-
T Consensus 320 LRa~LRqDPDvImVGE 335 (500)
T COG2804 320 LRAILRQDPDVIMVGE 335 (500)
T ss_pred HHHHHCCCCCEEEEEC
T ss_conf 9998665998599835
No 207
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.93 E-value=0.013 Score=40.07 Aligned_cols=100 Identities=25% Similarity=0.329 Sum_probs=72.3
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC-
Q ss_conf 9999871877421000258841899623443334688999999998614895078205422100477999985103474-
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD- 158 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~- 158 (461)
.||-++||+.-. + -.+||+-|-.|.||+|-+-.+|..+.+ +.+|+-|+..- ..+|++.=|+++++.
T Consensus 77 ~ElDRVLGGGlV-----~--GS~iLlgGePGIGKSTLlLQ~a~~la~--~~~vLYvSGEE----S~~Qik~RA~RLg~~~ 143 (454)
T PRK11823 77 GELDRVLGGGLV-----P--GSVVLIGGDPGIGKSTLLLQVAAALAA--GGKVLYVSGEE----SLQQIKLRAERLGLPS 143 (454)
T ss_pred HHHHHCCCCCCC-----C--CEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEECCCH----HHHHHHHHHHHHCCCC
T ss_conf 566522158720-----6--648995079988899999999999855--99579981501----5789999999758888
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf -22233210368999999999974158869983344222
Q gi|254780711|r 159 -TLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNH 196 (461)
Q Consensus 159 -~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~ 196 (461)
-+....+.|.-.| ++.......|+++||.-=-.+
T Consensus 144 ~~l~l~~et~l~~I----l~~i~~~~P~~lIIDSIQT~~ 178 (454)
T PRK11823 144 DNLYLLAETNLEDI----LATIEEEKPDLVVIDSIQTMY 178 (454)
T ss_pred CCCEEEECCCHHHH----HHHHHHHCCCEEEEECHHEEE
T ss_conf 87378853689999----999986099889994311154
No 208
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.93 E-value=0.0015 Score=47.27 Aligned_cols=45 Identities=24% Similarity=0.396 Sum_probs=39.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf 8841899623443334688999999998614895078205422100
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA 143 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a 143 (461)
+++.||-|+|+.||||||-+-+|..++.. .+.++.++-.|.+|.+
T Consensus 2 ~kg~viWltGlsgSGKTTia~~l~~~L~~-~~~~~~~LDGD~lR~~ 46 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTISHALAEKLRA-RGYPVEVLDGDIVRTN 46 (175)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHHH
T ss_conf 98889998898999999999999999998-6996799776888875
No 209
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.017 Score=39.33 Aligned_cols=106 Identities=24% Similarity=0.278 Sum_probs=77.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999998718774210002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r 77 IVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ 156 (461)
Q Consensus 77 iv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~ 156 (461)
.-+.||-++||+.-. +-.+||+-|=.|.||+|..-.+|+.+..+ + +|+.|+..- ...|.+.-|++++
T Consensus 77 tg~~EldRVLGGG~V-------~Gs~iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEE----S~~QiklRA~RL~ 143 (456)
T COG1066 77 TGIEELDRVLGGGLV-------PGSVILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEE----SLQQIKLRADRLG 143 (456)
T ss_pred CCHHHHHHHHCCCCC-------CCCEEEECCCCCCCHHHHHHHHHHHHHHC-C-CEEEEECCC----CHHHHHHHHHHHC
T ss_conf 781888765367723-------66179973689877989999999998705-9-579996776----7899999999828
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 7422--233210368999999999974158869983344222112
Q gi|254780711|r 157 VDTL--EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIND 199 (461)
Q Consensus 157 v~~~--~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~ 199 (461)
++.. ....+.+--.| +......+.|+++||.---++.++
T Consensus 144 ~~~~~l~l~aEt~~e~I----~~~l~~~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 144 LPTNNLYLLAETNLEDI----IAELEQEKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred CCCCCEEEEHHCCHHHH----HHHHHHCCCCEEEEECCCEECCCC
T ss_conf 99645577411289999----999985499789996541230263
No 210
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.92 E-value=0.016 Score=39.46 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 8418996234433346889999999986
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKT 126 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~ 126 (461)
+.+ .++||-.|+|||.-+=-||.....
T Consensus 194 KNN-piLVGepGVGKTAIvEGLA~rI~~ 220 (852)
T TIGR03346 194 KNN-PVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCC-CCEECCCCCCHHHHHHHHHHHHHC
T ss_conf 489-721279998799999999999866
No 211
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=96.91 E-value=0.0034 Score=44.62 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=69.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHHHHH
Q ss_conf 9962344333468899999999861489507-82054221004779999851034742---2233210368999999999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-MASLDVHRPAAQEQLRYLGEQIQVDT---LEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~-lv~~Dt~R~aA~eQL~~~a~~~~v~~---~~~~~~~dp~~i~~~a~~~ 178 (461)
..++-|+||||||.-.=.|.||+.++|++|. +.-|.+-=.-|.+.|+++++..|+-+ +..+.+.=|.+-=++..|.
T Consensus 102 Fai~APTGVGKttFG~~mslflA~kKGkR~y~ilPT~lLv~Qv~~kl~~~~~k~g~~~~~l~~~yhS~L~~~~kke~~Er 181 (1843)
T TIGR01054 102 FAIVAPTGVGKTTFGLVMSLFLAKKKGKRSYIILPTTLLVKQVAEKLSSLAEKEGVGIVRLLGAYHSKLSTKEKKEVKER 181 (1843)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHH
T ss_conf 48980588767799999999986542987899947078899999998752002575000022210112654567889998
Q ss_pred HHHCCCCEEEEECCCCCCCH
Q ss_conf 97415886998334422211
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHIN 198 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d 198 (461)
+.+.+|| |||=|++=++.+
T Consensus 182 i~~GDfd-ilitT~~FL~K~ 200 (1843)
T TIGR01054 182 IENGDFD-ILITTSMFLSKN 200 (1843)
T ss_pred HHCCCEE-EEHHHHHHHHHH
T ss_conf 7318917-861224688876
No 212
>PTZ00301 uridine kinase; Provisional
Probab=96.91 E-value=0.0019 Score=46.55 Aligned_cols=44 Identities=25% Similarity=0.203 Sum_probs=36.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCCCC
Q ss_conf 8418996234433346889999999986148-9507820542210
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKILMASLDVHRP 142 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~lv~~Dt~R~ 142 (461)
+|.||-++|..||||||.+.+|+..+..+.+ .+|.+++-|.|--
T Consensus 2 ~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~ 46 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 988999968876789999999999987614998079983676677
No 213
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.91 E-value=0.028 Score=37.62 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 89962344333468899999999861489507820
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS 136 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~ 136 (461)
.|.+-|+-||||||.+.+|+.+|.. .|.+|.+..
T Consensus 2 ~IviEG~dGsGKsT~~~~L~~~L~~-~g~~v~~~~ 35 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA-RGYEVVLTR 35 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEE
T ss_conf 8999899899999999999999997-799389986
No 214
>PRK13973 thymidylate kinase; Provisional
Probab=96.91 E-value=0.022 Score=38.37 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=58.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-----CCCHHHHHHHHH
Q ss_conf 189962344333468899999999861489507820542210047799998510347422233-----210368999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-----PEQSPEKIAIRA 175 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-----~~~dp~~i~~~a 175 (461)
.-|.|=|+-||||||-+..|+.||.. .|.+|.+.. .--..-..+.++.+-..-..+-+... ...|-..-+.+-
T Consensus 4 ~fIv~EGiDGsGKsTq~~~L~~~L~~-~g~~v~~tr-ePg~t~~~e~ir~~ll~~~~~~~~~~~e~lLfaA~R~eh~~~~ 81 (216)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRA-AGYDVLVTR-EPGGSPGAEAIRHVLLSGAAELYGPAMEALLFAAARDDHVEEV 81 (216)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEE-CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 49998899999899999999999997-799579940-9899840899999984666578998999999999999999999
Q ss_pred HHHHHHCCCCEEEEEC---------CCCCCCHHHHHHHHHHHH-HHCCCCCCCC
Q ss_conf 9999741588699833---------442221124689999998-5138511000
Q gi|254780711|r 176 TQSARDGGYDAVILDT---------AGRNHINDSLMQEISEIK-SLTNPHEILL 219 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDT---------aGR~~~d~~lm~El~~i~-~~~~p~e~~l 219 (461)
+..+..++ .+||.|- ......+.+.+..+..+. ....||-+++
T Consensus 82 I~paL~~g-~~VI~DRy~~Ss~AYQg~~~~~~~~~l~~l~~~~~~~~~PDlti~ 134 (216)
T PRK13973 82 IRPALARG-KIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLI 134 (216)
T ss_pred HHHHHHCC-CEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99999779-989867862579999774278898999999999967999998999
No 215
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.91 E-value=0.018 Score=39.12 Aligned_cols=139 Identities=24% Similarity=0.271 Sum_probs=66.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
+|.++|-.-+||||-.-+| .. .++... .++.+.| .+..+..... ..
T Consensus 2 ~VaivG~~n~GKSTL~n~L----~~---~~~~~~-----~~~g~T~--------~i~~~~~~~~--------------~~ 47 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKI----RK---TNVAAG-----EAGGITQ--------HIGAFEVPAE--------------VL 47 (168)
T ss_pred EEEEEECCCCCHHHHHHHH----HC---CCCCEE-----ECCCCEE--------EECEEEEEEE--------------EC
T ss_conf 8999948998598999998----58---675045-----1698168--------7153999988--------------25
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH---H--HHHHHHHHHHHCCCCCEEEEECCCC-CC
Q ss_conf 1588699833442221124689999998513851100031011122---5--6888898876358440776411576-63
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ---D--AVHLARNFDKIVDLTGIILTRMDGD-GR 255 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq---~--a~~~a~~F~~~~~i~giIlTKlD~~-ak 255 (461)
.++.+.+|||+| |.+ +.++..... .-.|-++||+||..|- + ..++++.++ .+ -=++++|+|-- +.
T Consensus 48 ~~~~i~~iDTPG--h~~---f~~~~~~~~-~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~--~p-~ivviNKiD~~~~~ 118 (168)
T cd01887 48 KIPGITFIDTPG--HEA---FTNMRARGA-SLTDIAILVVAADDGVMPQTIEAIKLAKAAN--VP-FIVALNKIDKPNAN 118 (168)
T ss_pred CCCEEEEEECCC--CHH---HHHHHHHHH-HHCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CC-EEEEEECCCCCCCC
T ss_conf 887189998998--167---799999998-6268899998646675458999999998769--97-89999893089879
Q ss_pred CCHHHHHHHHH----------CCCHHHEE--CCCCCCCCC
Q ss_conf 30367778884----------78730261--586723210
Q gi|254780711|r 256 GGAALSMRTVT----------GKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 256 gG~als~~~~~----------~~PI~fig--~GE~~~dle 283 (461)
.--........ ..||.+++ +|+.+++|-
T Consensus 119 ~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~tG~gi~~L~ 158 (168)
T cd01887 119 PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred HHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCCHHHHH
T ss_conf 8999999999754524552898759999899998999999
No 216
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=96.89 E-value=0.0047 Score=43.49 Aligned_cols=196 Identities=15% Similarity=0.228 Sum_probs=107.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC----------------CCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 3443334688999999998614895078205422----------------100477999985103474222332103689
Q gi|254780711|r 107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH----------------RPAAQEQLRYLGEQIQVDTLEVIPEQSPEK 170 (461)
Q Consensus 107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~----------------R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~ 170 (461)
-+-|+|||-++.-||.+|++ .|.+|++++=.-- .-.+=|.| .+++..++|++.+. |-..
T Consensus 60 tvGGTGKTP~v~~La~~L~~-~G~~~~IiSRGYg~~~~~~~~~v~~~~~~~~vGDEpl-lla~~~~~pV~V~~---~R~~ 134 (332)
T PRK00313 60 TVGGTGKTPLILWLIEHCRR-RGLRVGVVSRGYGARPPQLPWRVTADQDAAEAGDEPL-LIVQRTGVPLMIDP---DRPR 134 (332)
T ss_pred EECCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCEEECCCCCHHHCCCHHH-HHHHCCCCCEEECC---CHHH
T ss_conf 35887777999999999997-7996589864656766677355457768455585889-99850696299807---6999
Q ss_pred HHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHH----HHHHHHHHHCCCC
Q ss_conf 99999999974-158869983344222112468999999851385110003101112--2568----8889887635844
Q gi|254780711|r 171 IAIRATQSARD-GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG--QDAV----HLARNFDKIVDLT 243 (461)
Q Consensus 171 i~~~a~~~a~~-~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~----~~a~~F~~~~~i~ 243 (461)
|++.+.. ..+|+||.|-+= .|.. +.+|--++|+|+..+ ..-+ .--+-....-..+
T Consensus 135 ----a~~~l~~~~~~dviIlDDGf-Qh~~-------------l~rDl~Ivvid~~~~fGNg~lLPaGpLREp~~~l~raD 196 (332)
T PRK00313 135 ----AVQALLAAEPLDLILSDDGL-QHYR-------------LARDLELVLIDAARGLGNGRCLPAGPLREPAERLAEVD 196 (332)
T ss_pred ----HHHHHHHCCCCCEEEECCCC-CCHH-------------HCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf ----99999964999889955853-1201-------------04880699845667888988877864558853760089
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 0776411576633036777888478730261586723210013688998773586278899987421-126789988865
Q gi|254780711|r 244 GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARN-LNEKQAALTAKK 322 (461)
Q Consensus 244 giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~-~d~~~~~~l~~k 322 (461)
-+|+|+-+.+...+-+..+. -..+..+.+|+... ++.|.+.+-+-.+=|.|+...+.+..++. +.-.+ . .=
T Consensus 197 ~vi~~g~~~~~~~~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~k~v~a~aGIgnP~~F~~~L~~~g~~~~~--~--~F 268 (332)
T PRK00313 197 AVLYNGAAADPDDGYAFRLQ---PSALVNLRSGERRP-LDHFPAGQALHAVAGIGNPQRFFNTLEGLHWRPVP--H--PF 268 (332)
T ss_pred EEEECCCCCCCCHHHHHHCC---CCCCEECCCCCCCC-CCHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEE--E--EC
T ss_conf 99997997555645664407---67428678856266-31102488289998159879999999987993766--4--68
Q ss_pred HHCCCCCHHHH
Q ss_conf 31046379999
Q gi|254780711|r 323 IAKGKFDLEDL 333 (461)
Q Consensus 323 ~~~g~F~l~Df 333 (461)
--+-.|+-.|+
T Consensus 269 pDHh~ys~~Di 279 (332)
T PRK00313 269 ADHAQYSAQEL 279 (332)
T ss_pred CCCCCCCHHHH
T ss_conf 99767899997
No 217
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.89 E-value=0.0099 Score=41.06 Aligned_cols=48 Identities=25% Similarity=0.446 Sum_probs=32.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYL 151 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~ 151 (461)
-|.+-|+-||||||-+-+|+.+|.. .|.+|.+.. .-.+.-.-+.++.+
T Consensus 5 fIviEGiDGsGKsTq~~~L~~~L~~-~g~~v~~t~-eP~~t~~g~~ir~~ 52 (204)
T PRK00698 5 FITIEGIDGAGKSTQIELLAERLEE-QGRDVVFTR-EPGGTPLGEKLREL 52 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEE-CCCCCCHHHHHHHH
T ss_conf 9999889999899999999999996-799789986-99998069999999
No 218
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.87 E-value=0.011 Score=40.69 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
+..-++|.|..|+|||..++-+|+.+.. .|++|+++++--+ ++.|+.- |..... .... -+..
T Consensus 95 ~~~gLlF~G~~GTGKThLA~aIan~Li~-~G~sVlf~t~~dL----l~~lr~t--------~~~~~~-~e~~----~l~~ 156 (242)
T PRK07952 95 NIASFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIITVADI----MSAMKDT--------FRNSET-SEEQ----LLND 156 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEHHHH----HHHHHHH--------HHCCCC-CHHH----HHHH
T ss_conf 8871799789999789999999999998-7994999779999----9999999--------806875-6999----9998
Q ss_pred HHHCCCCEEEEECCCCCCCHHH
Q ss_conf 9741588699833442221124
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDS 200 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~ 200 (461)
-.++|++|||--|-.+..+.
T Consensus 157 --l~~~dLLIiDdlG~e~~t~~ 176 (242)
T PRK07952 157 --LSNVDLLVIDEIGVQTESRY 176 (242)
T ss_pred --HHCCCEEEEECCCCCCCCHH
T ss_conf --63189898730146658888
No 219
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.87 E-value=0.013 Score=40.22 Aligned_cols=143 Identities=19% Similarity=0.327 Sum_probs=70.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
|.++|...+||+|-+-.|.. .+++..++ ++ ||-- . .+.+|..
T Consensus 2 IaivG~pN~GKSTL~N~L~~------~~~~~~vs-~~--~gtT-------r--~i~~~~~-------------------- 43 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN------RKKLARTS-KT--PGKT-------Q--LINFFNV-------------------- 43 (170)
T ss_pred EEEECCCCCCHHHHHHHHHC------CCCEEEEE-CC--CCEE-------E--EEEEEEE--------------------
T ss_conf 89998999999999999968------99627860-78--9778-------5--2058853--------------------
Q ss_pred CCCEEEEECCCC--CCCHHHHHH----HHHHHHHHC-CCCCCCCCCCHHCCH--HHHHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf 588699833442--221124689----999998513-851100031011122--568888988763584-4077641157
Q gi|254780711|r 183 GYDAVILDTAGR--NHINDSLMQ----EISEIKSLT-NPHEILLVADALTGQ--DAVHLARNFDKIVDL-TGIILTRMDG 252 (461)
Q Consensus 183 ~~D~iiiDTaGR--~~~d~~lm~----El~~i~~~~-~p~e~~lV~da~~Gq--~a~~~a~~F~~~~~i-~giIlTKlD~ 252 (461)
+..+++|||+|- ........+ .+.+..+.. +-+-+++|+||..|- .-...++...+ .+. -=++++|.|-
T Consensus 44 ~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~-~~kp~iiVlNKiDl 122 (170)
T cd01876 44 NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-LGIPFLVVLTKADK 122 (170)
T ss_pred CCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEEEEEC
T ss_conf 87799996578401016877999999999999984063349999996322374868999999987-69987999986753
Q ss_pred CCCCCH--HH-HHHHH-----HCCCHHHEEC--CCCCCCCCC
Q ss_conf 663303--67-77888-----4787302615--867232100
Q gi|254780711|r 253 DGRGGA--AL-SMRTV-----TGKPIKAIGT--GEKINDLEN 284 (461)
Q Consensus 253 ~akgG~--al-s~~~~-----~~~PI~fig~--GE~~~dle~ 284 (461)
-.+... .+ .+... ...||.+++. |+.+++|..
T Consensus 123 v~~~~~~~~~~~~~~~l~~~~~~~~ii~iSA~~g~gi~~L~~ 164 (170)
T cd01876 123 LKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRA 164 (170)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 787789999999999874217998399998899977999999
No 220
>PRK09354 recA recombinase A; Provisional
Probab=96.86 E-value=0.023 Score=38.31 Aligned_cols=94 Identities=13% Similarity=0.210 Sum_probs=60.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 189962344333468899999999861489507820542210047799998510347422233-2103689999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-PEQSPEKIAIRATQSA 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-~~~dp~~i~~~a~~~a 179 (461)
.++-+.|+..|||||.+....+..++.++ .++++- +-.+ ++ ..|++.+||++=... ...|-.+-+.+.++..
T Consensus 61 RivEi~G~esSGKTtlal~~iaeaQk~Gg-~~a~iD--aE~a--ld--~~~a~~lGVd~d~llv~qpd~~Eqal~i~e~L 133 (350)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGG-TAAFID--AEHA--LD--PVYAKKLGVDIDNLLVSQPDTGEQALEIADAL 133 (350)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEE--ECCC--CC--HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHH
T ss_conf 08999889877799999999999997599-479996--0002--79--88999849771571785686799999999999
Q ss_pred H-HCCCCEEEEECCCCCCCHHHH
Q ss_conf 7-415886998334422211246
Q gi|254780711|r 180 R-DGGYDAVILDTAGRNHINDSL 201 (461)
Q Consensus 180 ~-~~~~D~iiiDTaGR~~~d~~l 201 (461)
. ....|+|+||.-+-+.-..++
T Consensus 134 vrsg~vd~IVvDSVaAL~pk~Ei 156 (350)
T PRK09354 134 VRSGAVDLIVVDSVAALVPKAEI 156 (350)
T ss_pred HHCCCCCEEEEECCCCCCCHHHH
T ss_conf 85488418998253345768887
No 221
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=96.86 E-value=0.0066 Score=42.40 Aligned_cols=161 Identities=20% Similarity=0.285 Sum_probs=84.3
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999998718774210002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r 77 IVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ 156 (461)
Q Consensus 77 iv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~ 156 (461)
-+++++.+.|.... .....+.-|.++|-.-+||.|-+-+|.. +.+ + +|+ |. ||
T Consensus 153 ~L~~~i~~~l~~~~----~~~~~~iriaiiGrpNvGKStl~N~ll~-----~~r-~-ivs-~~--~G------------- 205 (438)
T PRK00093 153 DLLDAILELLPEEE----EEEEDPIKIAIIGRPNVGKSTLINALLG-----EER-V-IVS-DI--AG------------- 205 (438)
T ss_pred HHHHHHHHHCCCCC----CCCCCCEEEEEECCCCCCHHHHHHHHHH-----HHH-H-HCC-CC--CC-------------
T ss_conf 99999985488554----3445560599955888655678887654-----333-2-047-99--98-------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHH--HHHHHHHHHHHHCCCCCCCCCCCHHCC---HH
Q ss_conf 7422233210368999999999974158869983344222---112--468999999851385110003101112---25
Q gi|254780711|r 157 VDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNH---IND--SLMQEISEIKSLTNPHEILLVADALTG---QD 228 (461)
Q Consensus 157 v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~---~d~--~lm~El~~i~~~~~p~e~~lV~da~~G---q~ 228 (461)
.-.|++.+. +..++..+.+|||||-.. .++ +.+.-.+.+...-..|-++||+||.-| ||
T Consensus 206 -------tTrD~i~~~------~~~~~~~~~~iDTaGirkk~k~~~~iE~~s~~~t~~~i~~~dvvilviDa~~~~~~qD 272 (438)
T PRK00093 206 -------TTRDSIDTP------FERDGQKYTLIDTAGIRRRGKVTEGIEKYSVIRTLKAIERADVVLLVIDATEGITEQD 272 (438)
T ss_pred -------CCCCCEEEE------EEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHH
T ss_conf -------511232679------9989967999989898765642137889999999999864466999997665884888
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCH---------HHHHHHHHCCCHHHEECCCC
Q ss_conf 688889887635844077641157663303---------67778884787302615867
Q gi|254780711|r 229 AVHLARNFDKIVDLTGIILTRMDGDGRGGA---------ALSMRTVTGKPIKAIGTGEK 278 (461)
Q Consensus 229 a~~~a~~F~~~~~i~giIlTKlD~~akgG~---------als~~~~~~~PI~fig~GE~ 278 (461)
..+|....+.=---=+++.|.|--.+... .-.......+||.|++.=++
T Consensus 273 -~~i~~~i~~~gk~~ii~vNKwDLv~~~~~~~~~~~~~i~~~l~~~~~~pIvfiSA~~g 330 (438)
T PRK00093 273 -LRIAGLALEAGRALVIVVNKWDLVEKDSKTMEEVKEELRRRLPFLDFAPIVFISALTG 330 (438)
T ss_pred -HHHHHHHHHCCCCEEEEEECHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf -9999999981996699997022256638999999999997561258987799851477
No 222
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.041 Score=36.32 Aligned_cols=217 Identities=18% Similarity=0.189 Sum_probs=107.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf 884189962344333468899999999861489-507820542210047799998510347422233210-368999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKK-KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA 175 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~-kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a 175 (461)
.-++.+||+|+.|+||||++-=||+.+--.++. .--+-.|+..+ ++...+ .-.++|+.....+ .-++-+++-
T Consensus 35 ri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~-----~i~~g~-~~~~DviEiDAAS~~gVddiReL 108 (775)
T PRK07764 35 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCV-----ALAPGG-PGSLDVVEIDAASHGGVDDAREL 108 (775)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-----HHHCCC-CCCCCEEEECCCCCCCHHHHHHH
T ss_conf 976337623788878889999999996689999989888876378-----886389-88886687315655688999999
Q ss_pred HH---HHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHHHHHHHHHCC---------
Q ss_conf 99---997-4158869983344222112468999999851385110003101112-256888898876358---------
Q gi|254780711|r 176 TQ---SAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHLARNFDKIVD--------- 241 (461)
Q Consensus 176 ~~---~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~a~~F~~~~~--------- 241 (461)
++ |+- ...|-|.|||-+-++... -++-|-|+.+.= |.+++|++ ++|- +....++..=.+.++
T Consensus 109 ~e~~~y~P~~~ryKVyIIDEaHmls~~--afNALLKtLEEP-P~hvvFIl-aTTep~kip~TI~SRcq~f~Fr~i~~~~~ 184 (775)
T PRK07764 109 RERAFFAPAQSRYRIFIIDEAHMVTTA--GFNALLKIVEEP-PEHLIFIF-ATTEPEKVIGTIRSRTHHYPFRLVPPGTM 184 (775)
T ss_pred HHHCCCCCCCCCEEEEEEECHHHHCHH--HHHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHCCCCCCCCCCHHHH
T ss_conf 985476876786359998535440799--999998862278-64627999-54873547167764102345266999999
Q ss_pred --------------CCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf --------------440----77641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r 242 --------------LTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 242 --------------i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l 303 (461)
++- +|.-.-||+-| -+||+... =|.|.|.| +++ ..-+-.|||+-|..-|
T Consensus 185 ~~~l~~i~~~E~i~~~~~al~li~r~~~Gs~R--DalS~ldQ---l~a~~~~~-~v~-------~~~a~~llG~~~~~~l 251 (775)
T PRK07764 185 RPYLERICAQEGVVVDDAVLPLVIRAGGGSPR--DTLSVLDQ---LLAGAGDD-GVT-------YERAVALLGVTDVALI 251 (775)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHCCCCC-CEE-------HHHHHHHHCCCCHHHH
T ss_conf 99999999983998798999999998289667--68999999---98404888-410-------9999998588858999
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHH
Q ss_conf 99874211267899--88865310463799999999
Q gi|254780711|r 304 VEKAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQF 337 (461)
Q Consensus 304 ~e~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql 337 (461)
.+-+....+.+-+. ....++...-+|.+-|.+-|
T Consensus 252 ~~~~~al~~~d~~~~~~~v~~~~~~G~d~~rf~~dL 287 (775)
T PRK07764 252 DDAVDALAAGDGAALFGVVDRVIEAGHDPRRFAEDL 287 (775)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 999999983789999999999998287889999999
No 223
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=96.84 E-value=0.063 Score=34.92 Aligned_cols=215 Identities=18% Similarity=0.206 Sum_probs=94.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCCHHHHHH
Q ss_conf 8841899623443334688999999998614895-0782054221004779999851034742223----3210368999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEV----IPEQSPEKIA 172 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~i~ 172 (461)
.-.+.++|.|+.|+||||++-=||+-+--..+.. --+..|..- +...+---++++.. ..+-|-+.-.
T Consensus 36 rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C--------~~i~~g~~~d~~EiDaAs~~~vdd~rel 107 (717)
T PRK08853 36 RLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATC--------KEIDEGRFVDLLEIDAASRTKVEDTREL 107 (717)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCH--------HHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 97405761088988898999999998678999999978887026--------7674478775245405656788999999
Q ss_pred HHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH---------
Q ss_conf 99999997-415886998334422211246899999985138511000310111225-----688889887---------
Q gi|254780711|r 173 IRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD--------- 237 (461)
Q Consensus 173 ~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~--------- 237 (461)
.+-+.|+- ...|-|.|||-.-.+.... +.-|-+..+.- |.++.|++ |||--+ .+.-+..|+
T Consensus 108 ~~~~~y~p~~~~yKvyiiDEvHmls~~a--fnAlLKtlEEP-P~hv~Fil-aTT~~~kip~TilSRc~~f~l~~~~~~~i 183 (717)
T PRK08853 108 LDNVQYKPARGRFKVYLIDEVHMLSRHS--FNALLKTLEEP-PEYVKFLL-ATTDPQKLPVTILSRCLQFHLKPISVDQI 183 (717)
T ss_pred HHHCCCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 9855548877854799983054438999--99998760378-75648998-43873437388987654423268999999
Q ss_pred ----------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf ----------6358440----77641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r 238 ----------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 238 ----------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l 303 (461)
+.+.++. +|-..-||+-| -|||+... -|.| |.|.-- +.-+..+||.-|-..+
T Consensus 184 ~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~R--dalsl~dq---aia~-~~g~~~--------~~~v~~mlg~~d~~~~ 249 (717)
T PRK08853 184 HQQLDFVLDKEQVSAEARALGLIAHAADGSMR--DALSLTDQ---AIAL-GNGQVT--------TDIVSHMLGTLDTDQA 249 (717)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHH-CCCCCC--------HHHHHHHHCCCCHHHH
T ss_conf 99999999975987699999999997688377--88889999---9996-589716--------9999998588877899
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99874211267899--888653104637999999999
Q gi|254780711|r 304 VEKAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQFR 338 (461)
Q Consensus 304 ~e~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql~ 338 (461)
++-.....+.+... .....+.....++...+..+-
T Consensus 250 ~~ll~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~ 286 (717)
T PRK08853 250 IHLLEAISSKQPQTAMDCIQQLADNGVEWDGLLQQLA 286 (717)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999955899999999999986889999999999
No 224
>PRK04195 replication factor C large subunit; Provisional
Probab=96.84 E-value=0.043 Score=36.17 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=47.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 189962344333468899999999861489507-8205422100477999985103474222332103689999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-MASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~-lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
..++|+||.|+||||++-=||+.+ |..|. +=|.|......+++.-.-+...+ +++
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~----g~~viElNASD~R~~~~I~~~i~~~~~~~-sl~------------------- 96 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDY----GWEVIELNASDQRTKDVIERVAGEASTSG-SLF------------------- 96 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH----CCCEEEECCCCCCCHHHHHHHHHHHHHCC-CCC-------------------
T ss_conf 469988939987999999999984----99859977101147899999999876068-877-------------------
Q ss_pred HHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHC
Q ss_conf 741588699833442221--124689999998513
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLT 212 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~ 212 (461)
....-+||+|-+--++. |.....+|.++.+..
T Consensus 97 -~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s 130 (403)
T PRK04195 97 -GAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA 130 (403)
T ss_pred -CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf -8873499963434457244479999999998548
No 225
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.84 E-value=0.0068 Score=42.29 Aligned_cols=144 Identities=25% Similarity=0.354 Sum_probs=75.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
-|.++|..-|||+|-+-.|. +.++.+ + |. |+. |.-...++ + . ..
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~-------~~~~~V-~-~~--pgT-----T~~~~~g~--i---~---------------~~ 45 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAIS-------NAKPKI-A-DY--PFT-----TLVPNLGV--V---R---------------VD 45 (170)
T ss_pred CEEEECCCCCCHHHHHHHHH-------CCCCEE-E-CC--CCC-----CCCCEEEE--E---E---------------EC
T ss_conf 58998999998999999996-------787603-2-56--665-----23744779--9---9---------------36
Q ss_pred CCCCEEEEECCCCC---CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC-----C----CCEEEEE
Q ss_conf 15886998334422---2112468999999851385110003101112256888898876358-----4----4077641
Q gi|254780711|r 182 GGYDAVILDTAGRN---HINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD-----L----TGIILTR 249 (461)
Q Consensus 182 ~~~D~iiiDTaGR~---~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~-----i----~giIlTK 249 (461)
.+..++++||+|=. |.+.++-.+. +..+-+.+-+++|+|+.-..+...+.+...+.+. + .=++++|
T Consensus 46 ~~~~i~~~DtpGi~~~~~~~~~l~~~~--l~~i~~advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK 123 (170)
T cd01898 46 DGRSFVVADIPGLIEGASEGKGLGHRF--LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNK 123 (170)
T ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHH--HHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEH
T ss_conf 985699964886444554662248999--861334561799998998789899999999999982744403865067762
Q ss_pred CCCCCCCC--HHHH--HHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf 15766330--3677--7888478730261--586723210
Q gi|254780711|r 250 MDGDGRGG--AALS--MRTVTGKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 250 lD~~akgG--~als--~~~~~~~PI~fig--~GE~~~dle 283 (461)
.|--.+-- ..+. .....+.||.||+ +|+.++.|.
T Consensus 124 ~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~gi~~L~ 163 (170)
T cd01898 124 IDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELL 163 (170)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 0242835638999999985699958999754797999999
No 226
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.83 E-value=0.003 Score=44.96 Aligned_cols=144 Identities=22% Similarity=0.300 Sum_probs=73.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
.|.++|-.-+||+|-.-+|.. .++ .|+ |. ||. .. |+.. ..+..
T Consensus 1 tVaIvG~PNvGKSTLlN~L~g-------~~~-~Vs-~~--pGt-------------Tr-------d~~~------~~~~~ 43 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALTG-------ARQ-HVG-NW--PGV-------------TV-------EKKE------GTFKY 43 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHC-------CCC-EEE-CC--CCC-------------CC-------CEEE------EEEEE
T ss_conf 989988999899999999959-------996-563-89--997-------------23-------3357------68752
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHH--HHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCCH
Q ss_conf 1588699833442221124689999--99851385110003101112256888898876-35844077641157663303
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEIS--EIKSLTNPHEILLVADALTGQDAVHLARNFDK-IVDLTGIILTRMDGDGRGGA 258 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~--~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~-~~~i~giIlTKlD~~akgG~ 258 (461)
.+..++++||+|-+..+....+|.- +....-.+|-+++|+||..-......+....+ ..+ .=++++|.|--.+-..
T Consensus 44 ~~~~~~lvDTpGi~~~~~~~~~e~v~~~~~~~~~aDlvl~vvDa~~~er~l~l~~~l~~~~~p-~IvVlNK~Dl~~~~~~ 122 (188)
T pfam02421 44 KGYEIEIVDLPGTYSLSPYSEEEKVARDYLLEEKPDVIINVVDATNLERNLYLTLQLLELGIP-VVVALNMMDEAEKKGI 122 (188)
T ss_pred CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCHHCCCCCC
T ss_conf 516799996888501465327899999998623687369997676245448999999976998-8999617020100365
Q ss_pred HH---HHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf 67---77888478730261--586723210
Q gi|254780711|r 259 AL---SMRTVTGKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 259 al---s~~~~~~~PI~fig--~GE~~~dle 283 (461)
.. ......|.|+.+|+ +|+.+++|.
T Consensus 123 ~~~~~~l~~~lg~~vi~ISA~~g~Gi~eL~ 152 (188)
T pfam02421 123 KIDIKKLSELLGVPVVPTSARKGEGIDELK 152 (188)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCHHHHH
T ss_conf 203999998739968999931699999999
No 227
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=96.83 E-value=0.029 Score=37.49 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=78.6
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC---CCC-EEEEC
Q ss_conf 1112--69989999999999999871877421000258841899623443334688999999998614---895-07820
Q gi|254780711|r 63 KILR--SIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLK---KKK-ILMAS 136 (461)
Q Consensus 63 ~~~~--~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~---~~k-V~lv~ 136 (461)
.+|. .+--++.=++-+...|..+|.| ...|.-|++-|.+|+|||.++-++...++..- +.. |.++.
T Consensus 12 Y~Pden~i~hRdeqI~~l~~~L~~~l~P--------G~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~ 83 (383)
T TIGR02928 12 YVPDENRIVHRDEQIEELAKALRPILRP--------GSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVY 83 (383)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 7027424668678999999998875067--------48987258878889878899999999999986226997158999
Q ss_pred CCCCCCHHHHH-HHHHHHCC-----CCCCCCCCCCCHHHHHHHHHHHHHHH-CCCC--EEEEECCCCC--CCHHH-----
Q ss_conf 54221004779-99985103-----47422233210368999999999974-1588--6998334422--21124-----
Q gi|254780711|r 137 LDVHRPAAQEQ-LRYLGEQI-----QVDTLEVIPEQSPEKIAIRATQSARD-GGYD--AVILDTAGRN--HINDS----- 200 (461)
Q Consensus 137 ~Dt~R~aA~eQ-L~~~a~~~-----~v~~~~~~~~~dp~~i~~~a~~~a~~-~~~D--~iiiDTaGR~--~~d~~----- 200 (461)
.+....-..-| +..+++++ +..+ ...| =|.+=+|+-+-..-. +.++ +|++|=-=++ ..+++
T Consensus 84 ~NC~~~~T~y~~~~~L~~~ln~~~~~~~v--P~tG-~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~~d~PAyS~ 160 (383)
T TIGR02928 84 INCQILDTSYQVLVELANQLNRRGSGEEV--PTTG-LSTSEVFRELYKELNRERGDSLIIVLDEIDKLVRKDDDDPAYSK 160 (383)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCCCCCC--CCCC-CCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCHHHHH
T ss_conf 77854684699999999985157788889--8877-87899999999998320188799986231022158888807878
Q ss_pred HHHHHHHHHHH
Q ss_conf 68999999851
Q gi|254780711|r 201 LMQEISEIKSL 211 (461)
Q Consensus 201 lm~El~~i~~~ 211 (461)
++=+|.+....
T Consensus 161 ~LY~L~Ra~~~ 171 (383)
T TIGR02928 161 LLYQLSRAREN 171 (383)
T ss_pred HHHHHHHHHHC
T ss_conf 85343310003
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=96.82 E-value=0.0038 Score=44.23 Aligned_cols=127 Identities=20% Similarity=0.147 Sum_probs=70.5
Q ss_pred CCCCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 58841-89962344333468899999999861489507820542210047799998510347422233210368999999
Q gi|254780711|r 97 APSPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA 175 (461)
Q Consensus 97 ~~~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a 175 (461)
..+|+ .|.++|-=-+||||.++.|...+... +..-.-... ..|++..--+ -|+.+-...
T Consensus 8 ~~kp~ini~~~GHVD~GKSTL~g~Lt~~~~~~-~~~~~~~~~------~~D~~~eEr~-rGiTid~~~------------ 67 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKK-GGGEAKAYD------QIDNAPEEKA-RGITINTSH------------ 67 (396)
T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCCHH------HHCCCHHHHC-CCEEEEEEE------------
T ss_conf 89983499999426885898999986145452-464312212------2116656743-773798569------------
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---H--HHHHHHHHHHHHCCCCC-EE-EE
Q ss_conf 999974158869983344222112468999999851385110003101112---2--56888898876358440-77-64
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---Q--DAVHLARNFDKIVDLTG-II-LT 248 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q--~a~~~a~~F~~~~~i~g-iI-lT 248 (461)
.++...++.+-+||++|--..=.++ |..+.+.|-.+||+||..| | +....++ .+++.- +| +|
T Consensus 68 -~~fet~~~~~~~iD~PGHe~fiknM------I~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~----~lgv~~~iV~vn 136 (396)
T PRK12735 68 -VEYETANRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVSAADGPMPQTREHILLAR----QVGVPYIVVFLN 136 (396)
T ss_pred -EEEECCCEEEEEEECCCHHHHHHHH------HHCCCCCCEEEEEEECCCCCCHHHHHHHHHHH----HHCCCEEEEEEE
T ss_conf -9997398059998368668877666------41004256799999868787531699999999----839985899998
Q ss_pred ECCCCC
Q ss_conf 115766
Q gi|254780711|r 249 RMDGDG 254 (461)
Q Consensus 249 KlD~~a 254 (461)
|+|--.
T Consensus 137 K~D~v~ 142 (396)
T PRK12735 137 KCDMVD 142 (396)
T ss_pred CCCCCC
T ss_conf 758888
No 229
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.81 E-value=0.022 Score=38.35 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=33.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHH------CCCCE------EEECCCCCCCHHHHHHHHHHH
Q ss_conf 189962344333468899999999861------48950------782054221004779999851
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTL------KKKKI------LMASLDVHRPAAQEQLRYLGE 153 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~------~~~kV------~lv~~Dt~R~aA~eQL~~~a~ 153 (461)
+-.++||-.|+|||.-+--||...... .++++ .++|.-.||----|-|+.+-+
T Consensus 201 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~ 265 (823)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMD 265 (823)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 88502379998799999999997608899868759936884288775334222679999999999
No 230
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.81 E-value=0.025 Score=38.01 Aligned_cols=102 Identities=22% Similarity=0.273 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 78989999999999999985246969999999999999830311126998999999999999987187742100025884
Q gi|254780711|r 21 SLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSP 100 (461)
Q Consensus 21 ~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p 100 (461)
.+++++++.. + -|.-++++.-|.++...+..-+.-. ..-...+..++...|+ ..+...|
T Consensus 24 ~lt~~e~~~~----~--~ln~~~~l~eV~~iylpL~~l~~~~---------~~~~~~~~~~~~~~l~------~~~~~~p 82 (283)
T COG1072 24 TLTEEELKRL----R--GLNEPISLDEVEDIYLPLSRLLQLY---------VEARERLFAELLRFLG------TNNQQRP 82 (283)
T ss_pred CCCHHHHHHH----C--CCCCCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHC------CCCCCCC
T ss_conf 2678999886----0--6788977999999999999999999---------9889988999999834------6688888
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCH
Q ss_conf 189962344333468899999999861489-5078205422100
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKK-KILMASLDVHRPA 143 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~-kV~lv~~Dt~R~a 143 (461)
.||-++|.-|+||.||+..|+.-+...... +|-++++|-|-..
T Consensus 83 fIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~ 126 (283)
T COG1072 83 FIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYP 126 (283)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 79996057665577899999999963889873378714545467
No 231
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.81 E-value=0.0072 Score=42.11 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=52.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
-|+ ++|.|+.|+||||.+-=||..+. ....-.+| ..+-++-.++.++.
T Consensus 37 ~~s-~Il~GPPG~GKTTlA~iiA~~~~----~~f~~lnA---------------------------~~~gv~dir~ii~~ 84 (417)
T PRK13342 37 LSS-MILWGPPGTGKTTLARIIAGATD----AEFEALSA---------------------------VTSGVKDLREVIEE 84 (417)
T ss_pred CCE-EEEECCCCCCHHHHHHHHHHHHC----CCEEEEEC---------------------------CCCCHHHHHHHHHH
T ss_conf 975-99889699989999999999868----98899614---------------------------10388999999999
Q ss_pred HHHC---CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9741---58869983344222112468999999851385110003101112256888898876358440776411576
Q gi|254780711|r 179 ARDG---GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGD 253 (461)
Q Consensus 179 a~~~---~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~ 253 (461)
++.. ..-+++||-.-|...... ..+...+....++ .+-|||-.-...+-.+--...-+ +-+.+|...
T Consensus 85 a~~~~~~~~tilfiDEIHRfnK~QQ-----D~LLp~vE~g~ii-LIgATTENP~f~in~aLlSRc~v--f~l~~L~~~ 154 (417)
T PRK13342 85 AKQSRLGRRTILFIDEIHRFNKAQQ-----DALLPHVEDGTIT-LIGATTENPSFEVNPALLSRAQV--FELKPLSEE 154 (417)
T ss_pred HHHHHCCCCEEEEEECHHHCCHHHH-----HHHHHHHHCCCEE-EEEECCCCCHHHCCHHHHHHHHH--EECCCCCHH
T ss_conf 8863148965999978200588999-----9998751126569-99741579225348989856570--020589999
No 232
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.81 E-value=0.0016 Score=47.15 Aligned_cols=36 Identities=36% Similarity=0.473 Sum_probs=31.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 899623443334688999999998614895078205422
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
+|.++|..||||||++-+|+..+. +.+|.+++.|-|
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~---~~~v~~i~~D~y 36 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---NPKVVIISQDSY 36 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC---CCCEEEEECCCC
T ss_conf 989889998859999999999809---998589978888
No 233
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.81 E-value=0.059 Score=35.13 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 996234433346889999999986
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKT 126 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~ 126 (461)
.++||-.|||||.-+=-||.....
T Consensus 211 PiLVGepGVGKTAIvEGLA~rI~~ 234 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 746579998799999999999976
No 234
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.80 E-value=0.047 Score=35.90 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=55.6
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----CCCCEEEECCC-CCCCHHHHHHHHHHH
Q ss_conf 999987187742100025884189962344333468899999999861-----48950782054-221004779999851
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTL-----KKKKILMASLD-VHRPAAQEQLRYLGE 153 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~-----~~~kV~lv~~D-t~R~aA~eQL~~~a~ 153 (461)
.+|-++|++.-. .-.|..++|..|+|||+-|-.||...... .+.+|+.+.+. .|++ +.|.++++
T Consensus 6 ~~lD~~L~GGi~-------~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~---~Rl~qia~ 75 (235)
T cd01123 6 KALDELLGGGIE-------TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP---ERLVQIAE 75 (235)
T ss_pred HHHHHHCCCCCC-------CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH---HHHHHHHH
T ss_conf 789965079964-------78799999999984999999999998424753678962999953677588---99999999
Q ss_pred CCC---------CCCCCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 034---------742223321036899999999997-4158869983344
Q gi|254780711|r 154 QIQ---------VDTLEVIPEQSPEKIAIRATQSAR-DGGYDAVILDTAG 193 (461)
Q Consensus 154 ~~~---------v~~~~~~~~~dp~~i~~~a~~~a~-~~~~D~iiiDTaG 193 (461)
..+ +-++...+..+-..+.......+. ..+..+|+||..-
T Consensus 76 ~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~v~LvVIDSia 125 (235)
T cd01123 76 RFGLDPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHCCCHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECH
T ss_conf 71347245422547963799999999999999987303772399996104
No 235
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.052 Score=35.55 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=11.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHH
Q ss_conf 9623443334688999999998
Q gi|254780711|r 104 MLVGLQGSGKTTTTAKIAYHLK 125 (461)
Q Consensus 104 llvGl~GsGKTTT~aKLA~~~~ 125 (461)
++||-.|+|||.-+-=||....
T Consensus 195 vLiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 195 VLVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 4766898889999989999974
No 236
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=96.79 E-value=0.069 Score=34.62 Aligned_cols=309 Identities=14% Similarity=0.133 Sum_probs=142.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE--EECCCCCCCHHHHHHHHHHHCCCCCCCCCC----CCCHHHH
Q ss_conf 5884189962344333468899999999861489507--820542210047799998510347422233----2103689
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL--MASLDVHRPAAQEQLRYLGEQIQVDTLEVI----PEQSPEK 170 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~--lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~----~~~dp~~ 170 (461)
.+-|+.+||+|+.|+||||++--+|..+--. +.... .-.|+..+. .....-.+++... .+-|.+.
T Consensus 35 ~ri~HAyLF~GprGtGKts~Ari~AkaLnC~-~~~~~~pC~~C~~C~~--------i~~g~~~DviEiDaasn~gVd~IR 105 (563)
T PRK06674 35 EKVSHAYLFSGPRGTGKTSIAKVFAKAVNCE-HAPVAEPCNECPSCLG--------ITNGSISDVLEIDAASNNGVDEIR 105 (563)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHH--------HHCCCCCCEEEECCCCCCCHHHHH
T ss_conf 9965034312899868999999999985799-9999887766878999--------855899877985255557879999
Q ss_pred HHHHHHHHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHH----HHHHH--------
Q ss_conf 999999999-74158869983344222112468999999851385110003101112256888----89887--------
Q gi|254780711|r 171 IAIRATQSA-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHL----ARNFD-------- 237 (461)
Q Consensus 171 i~~~a~~~a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~----a~~F~-------- 237 (461)
-..+-+.++ ....|-|+|||-+-++..+. ..-|-+..+.- |..++|++-.+--+.-..+ .+.|+
T Consensus 106 ~i~~~v~~~P~~~~yKV~IIDeah~Lt~~A--~NALLKtLEEP-P~~viFILaTtep~ki~~TI~SRCQrf~F~ri~~~~ 182 (563)
T PRK06674 106 DIRDKVKFAPSAVEYKVYIIDEVHMLSIGA--FNALLKTLEEP-PGHVIFILATTEPHKIPPTIISRCQRFDFRRISVND 182 (563)
T ss_pred HHHHHHCCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHHHCC-CCCEEEEEECCCHHHCCHHHHHHHEEEECCCCCHHH
T ss_conf 999982648867873799985456379999--99999986388-756499996599475847887331031278899999
Q ss_pred -----------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf -----------635844----07764115766330367778884787302615867232100136889987735862788
Q gi|254780711|r 238 -----------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVS 302 (461)
Q Consensus 238 -----------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~ 302 (461)
+.+.++ .+|..+-||+-| -|||+-... |.|- +++++. .-+..+||.-|-..
T Consensus 183 i~~rL~~I~~~E~i~~~~~aL~~Ia~~a~GsmR--DAlsiLdQ~---~s~~--~~~i~~-------~~v~~~lG~~~~~~ 248 (563)
T PRK06674 183 IVERLSTVVTNEGTQVEDEALQIIARAADGGMR--DALSLLDQA---ISFS--DERVTT-------EDVLAVTGAVSQQY 248 (563)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHHH---HHHC--CCCCCH-------HHHHHHHCCCCHHH
T ss_conf 999999999984999878899999997699788--999999999---9715--997689-------99999868998899
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHH----HHHHH--HCC-CCHHHHHHHHHCCCCCHHHHHHCCCCHHHH
Q ss_conf 9998742112678--99888653104637999999----99998--511-488999998731344234323111678888
Q gi|254780711|r 303 LVEKAARNLNEKQ--AALTAKKIAKGKFDLEDLAE----QFRQT--QKI-GGIGSILRMLPGMPSLKQNIMPSSFDDKTI 373 (461)
Q Consensus 303 l~e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~----Ql~~i--~km-G~l~~il~miPG~~~~~~~~~~~~~~e~~l 373 (461)
+.+-+....+.+. +-.+..++...-.+..-|.+ .++.+ .|. +.+..++.....-..+ ......+....+
T Consensus 249 ~~~l~~~i~~~d~~~~l~~~~~~~~~G~d~~~~~~dl~~~~r~~l~~k~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 326 (563)
T PRK06674 249 LGNLVECIRENDVSRALRIIDEMMGQGKDPVRLMEDFIYYYRDMLLYQTAPQLEHMLERVMVDEQF--RMLSEEMPPEVI 326 (563)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHHHHCCCHHHH
T ss_conf 999999998489999999999999879999999999999999988742379567654311154999--999852899999
Q ss_pred HHHHHHHHCCCHHHHC--CCCCCCHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8999997458987860--841133578999723---26679899999999999999999986068
Q gi|254780711|r 374 NHHIAIIASMTKEERA--NPSIIKHSRKKRIAA---GSGTNAAKINKLLKLHRQVAEMMHSTQGL 433 (461)
Q Consensus 374 k~~~aII~SMT~~Er~--~P~ll~~SR~~RIA~---GSG~~v~eVn~Llk~f~~m~kmmk~~~~~ 433 (461)
-++..+++.--.+=|. +|.++=.-=..|++. .+..+..++..|+++-.+..+-++..+..
T Consensus 327 ~~~i~~l~~~~~~~r~s~~~~~~lE~~~vkl~~~~~~~~~~~~~~~~l~~~i~~le~~~~~~~~~ 391 (563)
T PRK06674 327 YEIIHTLSKSQQEMKWTNHPRIFLEVVMVQLCQQFMMQANGADRLQAIMNRMQQLEKELERVKKN 391 (563)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999996147882188999999995303588777510678999999999999874046
No 237
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=96.79 E-value=0.0074 Score=42.01 Aligned_cols=37 Identities=38% Similarity=0.531 Sum_probs=31.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 99623443334688999999998614895078205422
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
+.--|--|+|||||.|-|+.-+.. .|+||.+|-+|.-
T Consensus 6 VvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~DiG 42 (272)
T COG2894 6 VVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDFDIG 42 (272)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHH-CCCEEEEEECCCC
T ss_conf 994488876743106778999997-3985999966767
No 238
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=96.79 E-value=0.0029 Score=45.16 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCCC
Q ss_conf 2588418996234433346889999999986148-950782054221
Q gi|254780711|r 96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKILMASLDVHR 141 (461)
Q Consensus 96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~lv~~Dt~R 141 (461)
.++++.+|-++|+.||||||.+..|+..+..... ..+.+++.|-|-
T Consensus 30 ~~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH 76 (230)
T PRK09270 30 EPQRRTVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFH 76 (230)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 99971899998999889999999999998623799857997365334
No 239
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=96.79 E-value=0.0019 Score=46.51 Aligned_cols=31 Identities=42% Similarity=0.599 Sum_probs=22.2
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 02588418996234433346889999999986
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKT 126 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~ 126 (461)
.++.-|.-|+|-||.|+||| |+|.||.--.|
T Consensus 171 ~aSPfPQHiiLYGPPGVGKT-TaARl~LEe~K 201 (616)
T TIGR02903 171 LASPFPQHIILYGPPGVGKT-TAARLALEEAK 201 (616)
T ss_pred HCCCCCCCEEEECCCCCCHH-HHHHHHHHHCC
T ss_conf 31888660785573388478-99999876213
No 240
>PRK13976 thymidylate kinase; Provisional
Probab=96.78 E-value=0.025 Score=37.92 Aligned_cols=114 Identities=23% Similarity=0.336 Sum_probs=55.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCHHH---HHHHHHHHC-CCCCCCC--CCCCCHHHHHHHHH
Q ss_conf 9962344333468899999999861-489507820542210047---799998510-3474222--33210368999999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTL-KKKKILMASLDVHRPAAQ---EQLRYLGEQ-IQVDTLE--VIPEQSPEKIAIRA 175 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~-~~~kV~lv~~Dt~R~aA~---eQL~~~a~~-~~v~~~~--~~~~~dp~~i~~~a 175 (461)
|.|=|+-||||||-+..|+.||+.. ++.+|.+ |+-||.- +.++.+-.. -+++-.. .-...|-..-+.+-
T Consensus 3 IvfEGiDGsGKsTq~~~L~~~L~~~~~~~~~~~----trEPggt~~ge~IR~~ll~~~~~~~~te~lLf~A~R~eh~~~~ 78 (202)
T PRK13976 3 ITFEGIDGSGKTTQSRLLAEYLSQIYGENNVVL----TREPGGTSFNESVRGLLLSTKNLDKLSELLLFIAMRREHFVKV 78 (202)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE----ECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999899999899999999999986069986898----3799998278999999716557996999999999999999999
Q ss_pred HHHHHHCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9999741588699833----------44222112468999999851385110003101
Q gi|254780711|r 176 TQSARDGGYDAVILDT----------AGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDT----------aGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
+..+-.++ .+||.|- .|| ..+.+.+.+|.++.....||-+++ +|-
T Consensus 79 I~PaL~~g-~~VI~DRy~~St~AYQg~~~-gl~~~~i~~l~~~~~~~~PDlt~~-Ldi 133 (202)
T PRK13976 79 ILPALTQG-KIVICDRFIDSTIAYQGYGC-GIDLKLIRDLNDLVVDIYPDITFI-LDI 133 (202)
T ss_pred HHHHHHCC-CEEEECCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCCCCCCEEEE-EEC
T ss_conf 88888669-98997485355788732267-989999999999840789887999-837
No 241
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=96.77 E-value=0.071 Score=34.54 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=8.8
Q ss_pred CCCCCC-CHHHHHHHHCCCCCC
Q ss_conf 084113-357899972326679
Q gi|254780711|r 389 ANPSII-KHSRKKRIAAGSGTN 409 (461)
Q Consensus 389 ~~P~ll-~~SR~~RIA~GSG~~ 409 (461)
..|-|| +..++++.|.--|..
T Consensus 417 a~~iLlG~~~~i~~~~~~~gl~ 438 (702)
T PRK05632 417 ADCVLLGNPEEIRRVAAAQGVD 438 (702)
T ss_pred EEEEEECCHHHHHHHHHHCCCC
T ss_conf 0599978999999999975999
No 242
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.77 E-value=0.0046 Score=43.61 Aligned_cols=96 Identities=16% Similarity=0.249 Sum_probs=49.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
|+++|+.||||||-+-++...+....+ ...+++- --+|..+.. ...+
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~-----~~~~~~~-----------~Tvg~~~~~-----------------i~~~ 48 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKG-----LPPSKIT-----------PTVGLNIGT-----------------IEVG 48 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC-----CCCCCCC-----------CCCCEEEEE-----------------EEEC
T ss_conf 999999998888999988750367677-----7655403-----------531326899-----------------9989
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH-HHHHH
Q ss_conf 588699833442221124689999998513851100031011122568888-98876
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA-RNFDK 238 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a-~~F~~ 238 (461)
++.+.+.||||.. .+.++-..+- -..+-+++|+|++- .+.++.+ ..|++
T Consensus 49 ~~~l~iwD~~Gqe-----~~~~l~~~y~-~~a~~ii~VvD~sd-~~~~~~~~~~l~~ 98 (167)
T cd04160 49 NARLKFWDLGGQE-----SLRSLWDKYY-AECHAIIYVIDSTD-RERFEESKSALEK 98 (167)
T ss_pred CEEEEEEECCCCH-----HHHHHHHHHC-CCCCEEEEEEECCC-HHHHHHHHHHHHH
T ss_conf 9999999689878-----8878998742-89878999986686-7889999999999
No 243
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.75 E-value=0.015 Score=39.63 Aligned_cols=87 Identities=23% Similarity=0.207 Sum_probs=45.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9962344333468899999999861-48950782054221004779999851034--74222332103689999999999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTL-KKKKILMASLDVHRPAAQEQLRYLGEQIQ--VDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~-~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~--v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
+++++++|+|||++..-.+.....+ ++.+++ +-+.+ |+-+.++.+.+.+..+ ..+.....+.+... ..-
T Consensus 3 ~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~l-il~Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 74 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVL-VLAPT-RELANQVAERLKELFGEGIKVGYLIGGTSIKQ------QEK 74 (144)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCEEE-EECCH-HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH------HHH
T ss_conf 99988997179999999999999756897699-97467-99999999999997488717999961363677------898
Q ss_pred HHCCCCEEEEECCCCCCC
Q ss_conf 741588699833442221
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHI 197 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~ 197 (461)
......-|+|-|.+++..
T Consensus 75 ~~~~~~~ilv~T~~~l~~ 92 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLD 92 (144)
T ss_pred HHCCCCCEEECCHHHHHH
T ss_conf 745898499828899999
No 244
>PRK07667 uridine kinase; Provisional
Probab=96.75 E-value=0.0037 Score=44.35 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=37.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 588418996234433346889999999986148950782054221
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
+..-.+|-+.|..||||||-+.+|+..+.. .+.+|.++..|-|=
T Consensus 11 ~~~r~iIgIaG~sgSGKTTla~~L~~~l~~-~~~~v~v~~~Dd~~ 54 (190)
T PRK07667 11 KENRFILGIDGLSRSGKTTFVANLKENMKQ-EGIPFHIFHIDDHI 54 (190)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCC
T ss_conf 598699997798978899999999999866-59837999666242
No 245
>PRK08082 consensus
Probab=96.74 E-value=0.074 Score=34.37 Aligned_cols=89 Identities=22% Similarity=0.238 Sum_probs=56.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC-HHH--HHHHH
Q ss_conf 4189962344333468899999999861489507820542210047799--998510347422233210-368--99999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ-SPE--KIAIR 174 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~-dp~--~i~~~ 174 (461)
-..|.+.|-.|.|||+.+.-+|.....+.+++|++.+..-- .+|| +.+|...+|+......+. ... .-+..
T Consensus 203 g~LiviaaRPsmGKTa~alnia~~~a~~~~~~V~~fSlEM~----~~~l~~R~la~~s~i~~~~i~~g~l~~~e~~~i~~ 278 (453)
T PRK08082 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEMG----ADQLVMRMLCAEGNIDAQRLRTGSLTSDDWGKLTM 278 (453)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 85799986788757899999999999855994899731389----89999999971558886677518999999999999
Q ss_pred HHHHHHHCCCCEEEEECCCC
Q ss_conf 99999741588699833442
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGR 194 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR 194 (461)
++... .+..+.|-||+|.
T Consensus 279 a~~~l--~~~~l~idd~~~~ 296 (453)
T PRK08082 279 AMGSL--SNAGIYIDDTPGI 296 (453)
T ss_pred HHHHH--CCCCEEEECCCCC
T ss_conf 99985--0697389789999
No 246
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=96.73 E-value=0.0014 Score=47.52 Aligned_cols=135 Identities=27% Similarity=0.409 Sum_probs=73.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC------------------------------
Q ss_conf 34433346889999999986148950782054221004779999851034------------------------------
Q gi|254780711|r 107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ------------------------------ 156 (461)
Q Consensus 107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~------------------------------ 156 (461)
|==|+|||||+|=|+.-|... |+||.+|=+|+- ||-+==.+|
T Consensus 9 GKGGVGKTTtTANlG~aLA~l-G~kVvliD~DiG-------LRNLD~~lGLEnRivYt~vDVveG~C~l~qALikDKr~~ 80 (272)
T TIGR01968 9 GKGGVGKTTTTANLGTALARL-GKKVVLIDADIG-------LRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLE 80 (272)
T ss_pred CCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCC-------CHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 788977358989999999961-982899954757-------034577742310354535543248421100100126752
Q ss_pred -CCCCCCCCCCHHH----HHHHHHHHHHHHC-CCCEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCC--------
Q ss_conf -7422233210368----9999999999741-5886998334-42221124689999998513851100031--------
Q gi|254780711|r 157 -VDTLEVIPEQSPE----KIAIRATQSARDG-GYDAVILDTA-GRNHINDSLMQEISEIKSLTNPHEILLVA-------- 221 (461)
Q Consensus 157 -v~~~~~~~~~dp~----~i~~~a~~~a~~~-~~D~iiiDTa-GR~~~d~~lm~El~~i~~~~~p~e~~lV~-------- 221 (461)
.-+.+.-...|-- +-.+.=++..+.+ +||+||||.+ | ++ +-+..++-|-+--+|+
T Consensus 81 NL~LLpAsQ~rdK~~~~~E~~~~lv~~Lk~~~~FDYviIDcPAG---IE-------~GF~nAv~~Ad~AiVVttPEvsav 150 (272)
T TIGR01968 81 NLYLLPASQTRDKDAVTPEQMKKLVNELKEEEHFDYVIIDCPAG---IE-------SGFRNAVAPADEAIVVTTPEVSAV 150 (272)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC---HH-------HHHHHHHHHCCEEEEEECCCCCCH
T ss_conf 35663653023613469778999999985437930799737877---43-------568998752683589877874510
Q ss_pred -CH--HCCHHHHHHHHHHHHHCCC------CCEEEEECCC-CCCCCHHHHHHHH
Q ss_conf -01--1122568888988763584------4077641157-6633036777888
Q gi|254780711|r 222 -DA--LTGQDAVHLARNFDKIVDL------TGIILTRMDG-DGRGGAALSMRTV 265 (461)
Q Consensus 222 -da--~~Gq~a~~~a~~F~~~~~i------~giIlTKlD~-~akgG~als~~~~ 265 (461)
|| .+| ..+++.. ..= ..+|+++++- =-+-|-.||+..+
T Consensus 151 RDADRvIG-----lLea~~~-i~~~GEE~~~~LivNR~rP~mV~~G~Mlsi~Dv 198 (272)
T TIGR01968 151 RDADRVIG-----LLEAKGN-IEEKGEEVKIKLIVNRLRPEMVKKGDMLSIDDV 198 (272)
T ss_pred HHHHHHHH-----HHCCCCC-CCCCCCEEEEEEEEECCCHHHHHCCCCCCHHHH
T ss_conf 02556752-----4212455-445776464347785156477416898278999
No 247
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.72 E-value=0.032 Score=37.16 Aligned_cols=145 Identities=15% Similarity=0.157 Sum_probs=72.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
.|.++|..-+||+|-.-.|. |.++. |+ + +|+- | .+..... ...
T Consensus 2 ~VaivG~pNvGKStL~N~L~-------g~~~~-v~-~--~p~T-----T------r~~~~~~---------------~~~ 44 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT-------RAKPE-VA-P--YPFT-----T------KSLFVGH---------------FDY 44 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH-------CCCCE-EC-C--CCCC-----C------CCCEEEE---------------EEE
T ss_conf 79998899988999999995-------89860-23-7--5872-----3------5743689---------------998
Q ss_pred CCCCEEEEECCCCCCCHHHHHH--HHHHHHHHCC-CCCCCCCCCHHCC--HHHHHHHHHHHHHCC-----CCCEEEEECC
Q ss_conf 1588699833442221124689--9999985138-5110003101112--256888898876358-----4407764115
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQ--EISEIKSLTN-PHEILLVADALTG--QDAVHLARNFDKIVD-----LTGIILTRMD 251 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~--El~~i~~~~~-p~e~~lV~da~~G--q~a~~~a~~F~~~~~-----i~giIlTKlD 251 (461)
+++.++++||+|=......-+. |...+....+ .+-+++|+|+... ...-++.+.+++... -.=+++.|.|
T Consensus 45 ~~~~~~liDTpGi~~~~~~~~~~ie~~~~~~l~~~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~D 124 (168)
T cd01897 45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKID 124 (168)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 37276872488655674788889999999999835776899996887678489999999998776525888799994753
Q ss_pred CCCCCC--HHHHHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf 766330--36777888478730261--586723210
Q gi|254780711|r 252 GDGRGG--AALSMRTVTGKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 252 ~~akgG--~als~~~~~~~PI~fig--~GE~~~dle 283 (461)
--..-. .+.......+.|+.+|+ +|+.+++|.
T Consensus 125 l~~~~~~~~~~~~~~~~~~~vi~ISA~~g~Gi~~L~ 160 (168)
T cd01897 125 LLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVK 160 (168)
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 458100799999997089988999815896999999
No 248
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.71 E-value=0.031 Score=37.32 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=30.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH------CCCCE------EEECCCCCCCHHHHHHHHH
Q ss_conf 89962344333468899999999861------48950------7820542210047799998
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTL------KKKKI------LMASLDVHRPAAQEQLRYL 151 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~------~~~kV------~lv~~Dt~R~aA~eQL~~~ 151 (461)
-.++||-.|+|||.-+--||...... .+++| .++|.-.||----+-|+..
T Consensus 209 NpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~LiAGtkyRGefEeRlk~v 270 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270 (758)
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCHHHHHHHHHH
T ss_conf 96021699986999999999999738997655898899845877861686415499999999
No 249
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.028 Score=37.56 Aligned_cols=219 Identities=14% Similarity=0.165 Sum_probs=97.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
+--++.++|+|||||||.+-=++..+.-..| +|.+-..|+... ..+..+.+++++- |..+..+-....+++-+.+
T Consensus 36 ~GE~v~iiG~nGsGKSTL~r~l~gl~~P~~G-~I~i~G~~~~~~---~~~~~~r~~ig~v-fQ~P~~~l~~~tV~e~i~f 110 (281)
T PRK13633 36 KGEFLVILGHNGSGKSTIAKHMNALLLPSEG-KVYVDGLDTSDE---ENLWDIRNKAGMV-FQNPDNQIVATIVEEDVAF 110 (281)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCH---HHHHHHHHCEEEE-EECCCCCCCHHHHHHHHHH
T ss_conf 9989999999998499999999758878885-699999987885---6699987360898-6688642028899999998
Q ss_pred HHHC-CCC--------------EEEEECCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHH------HHH
Q ss_conf 9741-588--------------6998334422211-246899999985138511000310-1112256888------898
Q gi|254780711|r 179 ARDG-GYD--------------AVILDTAGRNHIN-DSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHL------ARN 235 (461)
Q Consensus 179 a~~~-~~D--------------~iiiDTaGR~~~d-~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~------a~~ 235 (461)
...+ +.+ +=|-+-.-|.+.. ..=..+--.|..+.--+--+|++| .++|.|...+ .+.
T Consensus 111 g~~~~g~~~~e~~~rv~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA~aLa~~P~iLilDEPTs~LDp~~~~~i~~~l~~ 190 (281)
T PRK13633 111 GPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKE 190 (281)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 89886999999999999999867948766389100898599999999999859999998187343898999999999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCC-CHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 8763584407764115766330367778884787302615867232---1001-36889987735862788999874211
Q gi|254780711|r 236 FDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENF-FPDRIANRILGMGDVVSLVEKAARNL 311 (461)
Q Consensus 236 F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F-~p~~~~~riLGmgD~~~l~e~~~~~~ 311 (461)
.++..++|-+++|- | ++.+.. ---|.++--|+-+.+ =|.| +|+.+-..=|....+..|.+..+..
T Consensus 191 l~~e~g~Tii~vTH-d--------l~~~~~-aDrv~vm~~G~Iv~~G~p~evf~~~~~L~~~~l~~P~~~~l~~~L~~~- 259 (281)
T PRK13633 191 LNKKYGITIILITH-Y--------MEEAVE-ADRIIVMDKGKVVMEGTPKEIFKEVEMMKKIGLDVPQVTELAYELRKE- 259 (281)
T ss_pred HHHHCCCEEEEECC-C--------HHHHHC-CCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHC-
T ss_conf 99840989999867-8--------899973-998999989999997799999769889997799999199999999974-
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 267899888653104637999999999985
Q gi|254780711|r 312 NEKQAALTAKKIAKGKFDLEDLAEQFRQTQ 341 (461)
Q Consensus 312 d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~ 341 (461)
.-.+-+..+|.+++.+-+.+++
T Consensus 260 --------g~~~~~~~~t~~e~~~~l~~~k 281 (281)
T PRK13633 260 --------GVDIPSDILTIDEMVNELCQLK 281 (281)
T ss_pred --------CCCCCCCCCCHHHHHHHHHHCC
T ss_conf --------9999988779999999998639
No 250
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.71 E-value=0.0075 Score=41.97 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=22.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 8841899623443334688999999998
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLK 125 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~ 125 (461)
.-|+ ++|.|+.|+||||++--||+.+-
T Consensus 36 ~~ph-lLf~GppG~GKTt~a~~la~~l~ 62 (318)
T PRK00440 36 NMPH-LLFAGPPGTGKTTAALALARELY 62 (318)
T ss_pred CCCE-EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9866-98889599889999999999976
No 251
>PRK01184 hypothetical protein; Provisional
Probab=96.70 E-value=0.021 Score=38.56 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=26.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf 1899623443334688999999998614895078205422100477
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE 146 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e 146 (461)
.+|-++|..||||+|. +++ ++. .|.+| +-+.|.-|-.+.+
T Consensus 2 ~iIGlTG~iGSGKstv-a~i---~~e-~G~~v-i~~~Divr~~v~~ 41 (183)
T PRK01184 2 MIIIVTGMPGSGKGEF-SKI---ARE-LGIPV-VVMGDVIREEVKK 41 (183)
T ss_pred EEEEEECCCCCCHHHH-HHH---HHH-CCCEE-EECCHHHHHHHHH
T ss_conf 3999968998878999-999---997-79939-9860778999998
No 252
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.70 E-value=0.0011 Score=48.39 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=27.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 189962344333468899999999861489507820
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS 136 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~ 136 (461)
..|+++|++||||||+..-|..++.. .+.++..+-
T Consensus 140 ~~ilIsG~TGSGKTT~l~all~~i~~-~~~riitiE 174 (283)
T pfam00437 140 GNILVSGGTGSGKTTLLYALLNEINT-DDERIVTIE 174 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC-CCCCEEEEC
T ss_conf 75999889999889999999984087-776278733
No 253
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.69 E-value=0.036 Score=36.79 Aligned_cols=172 Identities=20% Similarity=0.273 Sum_probs=95.7
Q ss_pred EEEECC-CCCCHHHHHHHHHHHHHHHC----CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 996234-43334688999999998614----8950782054221004779999851034742223321036899999999
Q gi|254780711|r 103 IMLVGL-QGSGKTTTTAKIAYHLKTLK----KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ 177 (461)
Q Consensus 103 IllvGl-~GsGKTTT~aKLA~~~~~~~----~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~ 177 (461)
|++.|+ -|+||||.+.-|.+.|++++ ..||+ -|---|+ +..+-+=....|.+.|-.. + +.+++...
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvG---PDYIDP~-~H~~atG~~srNLD~~mm~----~-~~v~~~f~ 73 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVG---PDYIDPG-YHTAATGRPSRNLDSWMMG----E-EGVRALFA 73 (451)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCH-HHHHHHCCCCCCCCHHHCC----H-HHHHHHHH
T ss_conf 599548888858999999999998668721665568---7863813-5667638856777654469----9-89999999
Q ss_pred HHHHCCCCEEEEECC-------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH-CCHHHHHHHHHHH---HHCCCCCEE
Q ss_conf 997415886998334-------42221124689999998513851100031011-1225688889887---635844077
Q gi|254780711|r 178 SARDGGYDAVILDTA-------GRNHINDSLMQEISEIKSLTNPHEILLVADAL-TGQDAVHLARNFD---KIVDLTGII 246 (461)
Q Consensus 178 ~a~~~~~D~iiiDTa-------GR~~~d~~lm~El~~i~~~~~p~e~~lV~da~-~Gq~a~~~a~~F~---~~~~i~giI 246 (461)
+. .+..|+.||.-. +.-. +..=-..+.++..+ -|+||+|+. ..+.+..+++-|. ..+++.|||
T Consensus 74 ~~-~~~adi~vIEGVMGLfDG~~~~~-~~gSTA~lAk~l~~----PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVI 147 (451)
T COG1797 74 RA-AADADIAVIEGVMGLFDGRGSAT-DTGSTADLAKLLGA----PVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVI 147 (451)
T ss_pred HH-CCCCCEEEEEECCCCCCCCCCCC-CCCCHHHHHHHHCC----CEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 86-27898799961230236887776-77779999998599----98999957522578999998898619988257899
Q ss_pred EEECCCCCCCCHHHHHHHH-HCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 6411576633036777888-47873026158672321001368899877358
Q gi|254780711|r 247 LTRMDGDGRGGAALSMRTV-TGKPIKAIGTGEKINDLENFFPDRIANRILGM 297 (461)
Q Consensus 247 lTKlD~~akgG~als~~~~-~~~PI~fig~GE~~~dle~F~p~~~~~riLGm 297 (461)
++++-+.....-.-.+... ++ +..+|.=.+-++++. -+|=||.
T Consensus 148 lNrVgserH~~llr~Ale~~~g--v~vlG~lpr~~~l~l------p~RHLGL 191 (451)
T COG1797 148 LNRVGSERHYELLRDALEEYTG--VPVLGYLPRDDDLEL------PSRHLGL 191 (451)
T ss_pred EECCCCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCC------CCCCCCC
T ss_conf 7247778899999987553279--857987427855678------5413265
No 254
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.69 E-value=0.0049 Score=43.37 Aligned_cols=142 Identities=22% Similarity=0.231 Sum_probs=67.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 62344333468899999999861489507820542210047799998510347422233210368999999999974158
Q gi|254780711|r 105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGY 184 (461)
Q Consensus 105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~ 184 (461)
++|..++||||-+-.|. |.+++.++- +|+.- ... .+.... .....
T Consensus 1 ivG~~N~GKStL~N~L~-------~~~~~~vs~---~~gtT---------~~~-~~~~~~---------------~~~~~ 45 (163)
T cd00880 1 LFGRTNAGKSSLLNALL-------GQEVAIVSP---VPGTT---------TDP-VEYVWE---------------LGPLG 45 (163)
T ss_pred CCCCCCCCHHHHHHHHH-------CCCCCEECC---CCCEE---------CCC-EEEEEE---------------ECCCC
T ss_conf 91979989999999995-------899610169---89986---------564-589999---------------54786
Q ss_pred CEEEEECCCCCCCHHHHHHHH-HHH-HHHCCCCCCCCCCCHHCCHHHHH--HHHHHHHHCCCCCEEEEECCCCCCC--CH
Q ss_conf 869983344222112468999-999-85138511000310111225688--8898876358440776411576633--03
Q gi|254780711|r 185 DAVILDTAGRNHINDSLMQEI-SEI-KSLTNPHEILLVADALTGQDAVH--LARNFDKIVDLTGIILTRMDGDGRG--GA 258 (461)
Q Consensus 185 D~iiiDTaGR~~~d~~lm~El-~~i-~~~~~p~e~~lV~da~~Gq~a~~--~a~~F~~~~~i~giIlTKlD~~akg--G~ 258 (461)
.+.++||+|=...... -.+. +.. ..+-+.|-+++|+||..+....+ ..+...+.-.-.=+|++|.|--..- -.
T Consensus 46 ~i~lvDtpG~~~~~~~-~~~~~~~~~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~ 124 (163)
T cd00880 46 PVVLIDTPGIDEAGGL-GREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEE 124 (163)
T ss_pred EEEEEECCCCCCCCCH-HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHH
T ss_conf 5999727985222310-168999999999868989999878999755669999999971974278853420678789999
Q ss_pred H-----HHHHHHHCCCHHHEE--CCCCCCCC
Q ss_conf 6-----777888478730261--58672321
Q gi|254780711|r 259 A-----LSMRTVTGKPIKAIG--TGEKINDL 282 (461)
Q Consensus 259 a-----ls~~~~~~~PI~fig--~GE~~~dl 282 (461)
. .......+.||.+|+ +|+.+++|
T Consensus 125 ~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~L 155 (163)
T cd00880 125 LLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 9999999987679985999978989799999
No 255
>COG2403 Predicted GTPase [General function prediction only]
Probab=96.67 E-value=0.031 Score=37.28 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=85.4
Q ss_pred HHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC-CCCCCCHHHHH----HHHHHHCC----
Q ss_conf 7187742100025884189962344333468899999999861489507820-54221004779----99985103----
Q gi|254780711|r 85 VLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS-LDVHRPAAQEQ----LRYLGEQI---- 155 (461)
Q Consensus 85 lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~-~Dt~R~aA~eQ----L~~~a~~~---- 155 (461)
+|+|.+.-+ ...+|.+=...-=+|+|||+..+..|+.++.+ |.+|.+|. --.||---++| |..+++.-
T Consensus 114 ~~gP~et~~--~~ekPviaV~atrtg~GKsaVS~~v~r~l~er-gyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~ 190 (449)
T COG2403 114 ELGPKETML--KLEKPVIAVTATRTGVGKSAVSRYVARLLRER-GYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAA 190 (449)
T ss_pred EECCCHHHH--HHCCCEEEEEEECCCCCHHHHHHHHHHHHHHC-CCCEEEEECCEEECCCCCHHHHHHHHCHHHCCCCCC
T ss_conf 727527766--51485599997236655678889999999866-982379955702337731001897737765264225
Q ss_pred ----------CCCC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf ----------4742-22332103689999999999741588699833442221124689999998513851100031011
Q gi|254780711|r 156 ----------QVDT-LEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL 224 (461)
Q Consensus 156 ----------~v~~-~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~ 224 (461)
.++. .....|-|-..+.++|.+.+ |+|+.|-.| +| .-.++||--+-|.||.
T Consensus 191 t~eereeye~~I~tg~~vlAGvdy~~vlke~~~~a-----D~IlwdGgn---nd----------fPfvkpd~~Ivvvda~ 252 (449)
T COG2403 191 TDEEREEYESYIPTGGGVLAGVDYGTVLKEGEKEA-----DFILWDGGN---ND----------FPFVKPDLHIVVVDAL 252 (449)
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHC-----CEEEEECCC---CC----------CCCCCCCCEEEEECCC
T ss_conf 56668878743643553465204899998776415-----589994888---77----------8852577059993388
Q ss_pred C-CHHHHHHHHHHHHHCC---CCCEEEEECCCCCCC
Q ss_conf 1-2256888898876358---440776411576633
Q gi|254780711|r 225 T-GQDAVHLARNFDKIVD---LTGIILTRMDGDGRG 256 (461)
Q Consensus 225 ~-Gq~a~~~a~~F~~~~~---i~giIlTKlD~~akg 256 (461)
- |++..+ |--.+. -+-+|+||+|.-..+
T Consensus 253 rpg~ei~~----~pGe~~irlAD~VIItkveea~~~ 284 (449)
T COG2403 253 RPGEEIGS----FPGELRIRLADLVIITKVEEAMAE 284 (449)
T ss_pred CCCHHHCC----CCCCEEEEECCEEEEECCCCHHHH
T ss_conf 87256526----877315322128999613513367
No 256
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.026 Score=37.83 Aligned_cols=30 Identities=27% Similarity=0.281 Sum_probs=26.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 588418996234433346889999999986
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKT 126 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~ 126 (461)
..-|+-+||.|+.|+||||++-.+|.++-.
T Consensus 36 grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~ 65 (363)
T PRK07471 36 GRLHHAWLIGGPQGIGKATLAYRMARFLLA 65 (363)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 997645876799981889999999999857
No 257
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.64 E-value=0.0072 Score=42.12 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=39.0
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 10002588418996234433346889999999986148950782054221004779999
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRY 150 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~ 150 (461)
.+...++ .++.++|+|||||||.+-=|+..++-..| +|.+-..|+.......+++.
T Consensus 22 sl~i~~G--e~vaiiG~nGsGKSTL~~~l~Gll~P~~G-~I~v~G~d~~~~~~~~~~r~ 77 (274)
T PRK13644 22 NLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRPQKG-KVLVSGIDTGDFSKLQGIRK 77 (274)
T ss_pred EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCHHHHHHHH
T ss_conf 7798489--99999999998099999999706858887-29999998787056799987
No 258
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.62 E-value=0.0035 Score=44.49 Aligned_cols=131 Identities=18% Similarity=0.261 Sum_probs=64.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHH-----HHH
Q ss_conf 9962344333468899999999861489507820542210047799998510347422--233210368999-----999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL--EVIPEQSPEKIA-----IRA 175 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~--~~~~~~dp~~i~-----~~a 175 (461)
|.++|--++||||.++.|.+..-. +. +...+.++..++..|-+-+ +-.....+.+-. .-+
T Consensus 2 i~iiGHvD~GKSTL~g~lL~~~g~--------i~-----~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~ 68 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGG--------VD-----KRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVG 68 (219)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC--------CC-----HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEE
T ss_conf 899966899899999999998599--------76-----88999999999854998750556613898798589258858
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH---------HHHHHHHHHHHHCCCCCE-
Q ss_conf 9999741588699833442221124689999998513851100031011122---------568888988763584407-
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ---------DAVHLARNFDKIVDLTGI- 245 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq---------~a~~~a~~F~~~~~i~gi- 245 (461)
..++.-+++.+.||||+|--.. +.++.. .+...|-.+||+||..|- +..+.+..- ..+++..+
T Consensus 69 ~~~f~~~~~~~~iiDtPGH~df----~~~mi~--g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~-~~lGik~iI 141 (219)
T cd01883 69 LAKFETEKYRFTILDAPGHRDF----VPNMIT--GASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGVKQLI 141 (219)
T ss_pred EEEEEECCEEEEEEECCCCHHH----HHHHHH--HHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH-HHCCCCEEE
T ss_conf 9999849936999878972667----889998--775316689999857675103667776599999999-984997489
Q ss_pred -EEEECCCC
Q ss_conf -76411576
Q gi|254780711|r 246 -ILTRMDGD 253 (461)
Q Consensus 246 -IlTKlD~~ 253 (461)
.+.|||..
T Consensus 142 VavNKMD~v 150 (219)
T cd01883 142 VAVNKMDDV 150 (219)
T ss_pred EEEECCCCC
T ss_conf 999875368
No 259
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=96.61 E-value=0.023 Score=38.20 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=72.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH-HH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223321036899999999-99
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ-SA 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~-~a 179 (461)
-+|.+||-.-+||.|---+|. +++.++|. |+ -||.- | -+. .+
T Consensus 280 p~VAIVGRPNVGKSTLFNRL~-------g~r~AIV~-d~---------------pGvTR-------D-------R~~~~~ 322 (714)
T PRK09518 280 GTVAIVGRPNVGKSTLVNRIL-------GRREAVVE-DT---------------PGVTR-------D-------RVSYDA 322 (714)
T ss_pred CEEEEECCCCCCHHHHHHHHH-------CCCEEEEC-CC---------------CCCCC-------C-------CCEEEE
T ss_conf 879998999876899998862-------88416846-98---------------99883-------7-------555799
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC-CCCCCCCCCCHHCCHHH--HHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 7415886998334422211246899999-98513-85110003101112256--88889887635844077641157663
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISE-IKSLT-NPHEILLVADALTGQDA--VHLARNFDKIVDLTGIILTRMDGDGR 255 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~-i~~~~-~p~e~~lV~da~~Gq~a--~~~a~~F~~~~~i~giIlTKlD~~ak 255 (461)
.-.+..+.||||+|-....+.+-.++.. ...++ ..|-++||+|+..|-.. ..+|+-....=.-.=+++.|+|+...
T Consensus 323 ~~~~~~F~lvDTGG~~~~~~~~~~~I~~Q~~~Ai~eADlIlFVVD~~~Glt~~D~~ia~~LRk~~KpvilvvNK~D~~~~ 402 (714)
T PRK09518 323 EWAGRDFKLVDTGGWEADAEGIEAAIASQAEIAMTLADAIVFVVDGQVGMTSTDEVIARMLQRAGKPVVLVANKIDDQAS 402 (714)
T ss_pred EECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 99991699997999998832699999999999999689999999689798978999999998569988999989788764
Q ss_pred CCHHHHHHHHHCC
Q ss_conf 3036777888478
Q gi|254780711|r 256 GGAALSMRTVTGK 268 (461)
Q Consensus 256 gG~als~~~~~~~ 268 (461)
-. .++--+..|.
T Consensus 403 e~-~~~ef~~LG~ 414 (714)
T PRK09518 403 EY-DVAEFWKLGL 414 (714)
T ss_pred HH-HHHHHHHCCC
T ss_conf 01-2999996599
No 260
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.0074 Score=42.02 Aligned_cols=69 Identities=28% Similarity=0.279 Sum_probs=36.8
Q ss_pred EEEEECCCCCCCHH----HHHHHHHH------HHHHCCCCC-CCCCCCH---HCCHHHHH--H-------HHHHHHHCCC
Q ss_conf 69983344222112----46899999------985138511-0003101---11225688--8-------8988763584
Q gi|254780711|r 186 AVILDTAGRNHIND----SLMQEISE------IKSLTNPHE-ILLVADA---LTGQDAVH--L-------ARNFDKIVDL 242 (461)
Q Consensus 186 ~iiiDTaGR~~~d~----~lm~El~~------i~~~~~p~e-~~lV~da---~~Gq~a~~--~-------a~~F~~~~~i 242 (461)
-|+||||||..... .--.|=.. =.+...|.. +++.+|. ++.+.+.. - .++-++++++
T Consensus 176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~ 255 (1188)
T COG3523 176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA 255 (1188)
T ss_pred EEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 48985875244366750234888999888999735578886379997899973899999999999999999999984156
Q ss_pred C---CEEEEECCCCC
Q ss_conf 4---07764115766
Q gi|254780711|r 243 T---GIILTRMDGDG 254 (461)
Q Consensus 243 ~---giIlTKlD~~a 254 (461)
. -+.+||+|--.
T Consensus 256 ~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 256 RLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCEEEEEECCCCCC
T ss_conf 776389986210021
No 261
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=96.61 E-value=0.0035 Score=44.53 Aligned_cols=134 Identities=15% Similarity=0.218 Sum_probs=71.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
+| .|+++||.||||||-..+|.. ++.+--++ +..+ ++ ....
T Consensus 3 ~p-tvLllGl~~sGKT~Lf~~L~~------~~~~~T~t--S~~~-------------n~---~~~~-------------- 43 (181)
T pfam09439 3 QP-AVIIAGLCDSGKTSLFTLLTT------GSVRKTVT--SQEP-------------SA---AYKY-------------- 43 (181)
T ss_pred CC-EEEEECCCCCCHHHHHHHHHC------CCCCCEEC--CCCC-------------CC---EEEE--------------
T ss_conf 88-699986899989999999975------99487588--8678-------------64---0687--------------
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 97415886998334422211246899999985138511000310111225-68888988763584407764115766330
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-AVHLARNFDKIVDLTGIILTRMDGDGRGG 257 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-a~~~a~~F~~~~~i~giIlTKlD~~akgG 257 (461)
...++..+.+||+.|-......+.+.+.... +-.-+++|+||.+-+. .-+.|+-.++.+-.
T Consensus 44 ~~~~~~~~~lvD~PGh~klR~~~~~~~~~~~---~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~--------------- 105 (181)
T pfam09439 44 MNNKGNSLTLIDFPGHVKLRYKLLETLKDSS---SLRGLVFVVDSTAFPKEVTDTAEFLYDILSI--------------- 105 (181)
T ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHC---CCEEEEEEEECCCCHHHHHHHHHHHHHHHHC---------------
T ss_conf 5168966899988996899999998643002---6449999997866566799999999999844---------------
Q ss_pred HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 36777888478730261586723210013688998773
Q gi|254780711|r 258 AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL 295 (461)
Q Consensus 258 ~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL 295 (461)
+....-++||...++=+. +---.|..++...|
T Consensus 106 ---~~~~~~~vPvLI~cNKqD---l~~A~~~~~Ik~~L 137 (181)
T pfam09439 106 ---TELLKNGIDILIACNKQE---IFTARPPKKIKQAL 137 (181)
T ss_pred ---HHHCCCCCCEEEEEECCC---CCCCCCHHHHHHHH
T ss_conf ---543368997899973746---33577999999999
No 262
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.61 E-value=0.091 Score=33.71 Aligned_cols=218 Identities=16% Similarity=0.145 Sum_probs=105.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHHHHHCCCCCC-------CCCC------
Q ss_conf 84189962344333468899999999861489507820542--21004779999851034742-------2233------
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV--HRPAAQEQLRYLGEQIQVDT-------LEVI------ 163 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt--~R~aA~eQL~~~a~~~~v~~-------~~~~------ 163 (461)
+-.++.++|+|||||||.+-=|+..++-..|. |.+-..+. -+.+ +..+.+.+++-| |...
T Consensus 31 ~Ge~~aiiG~NGaGKSTLl~~i~Gll~p~~G~-I~~~G~~i~~~~~~----~~~~r~~ig~vfQ~p~~~l~~~tV~e~v~ 105 (285)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGILKPSSGR-ILFDGKPIDYSRKG----LMKLRESVGMVFQDPDNQLFSASVYQDVS 105 (285)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHH----HHHHHHHEEEEEECCCCCCCCCCHHHHHH
T ss_conf 99899999999980999999996598888608-99999998744344----99998740699707642447574999999
Q ss_pred -----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHH---
Q ss_conf -----21036899999999997415886998334422211-246899999985138511000310-11122568888---
Q gi|254780711|r 164 -----PEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIN-DSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLA--- 233 (461)
Q Consensus 164 -----~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d-~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a--- 233 (461)
.+-...++ ++.++.+-.. .++ -+-+.|...+ ..=..+.-.|..++--+--+|++| -+.|.|.....
T Consensus 106 ~g~~~~g~~~~e~-~~rv~~~L~~-~gl--~~~~~~~~~~LSGGqkqRvaIA~aLa~~P~iLlLDEPTagLDp~~~~~i~ 181 (285)
T PRK13636 106 FGAVNLKLPEDEV-RKRVDNALKR-TGI--EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181 (285)
T ss_pred HHHHHCCCCHHHH-HHHHHHHHHH-CCC--HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 9999859999999-9999999987-598--86652880019999999999999997499899997875559999999999
Q ss_pred ---HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCC-CHHHHHHHHHCCCCHHHHHHH
Q ss_conf ---9887635844077641157663303677788847873026158672321---001-368899877358627889998
Q gi|254780711|r 234 ---RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENF-FPDRIANRILGMGDVVSLVEK 306 (461)
Q Consensus 234 ---~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F-~p~~~~~riLGmgD~~~l~e~ 306 (461)
+..++..+.|=+++|- | +..+...---|.++..|+-+.+= |.| +|+-+-+-=|....+..|++.
T Consensus 182 ~ll~~l~~e~g~TiilvtH-d--------~~~v~~~aDrvivl~~G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~l~~~ 252 (285)
T PRK13636 182 KLLVEMQKELGLTIIIATH-D--------IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLPRIGHLMEI 252 (285)
T ss_pred HHHHHHHHHCCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCCHHHHHHH
T ss_conf 9999999844989999948-8--------999999699999998998999869999966999999779999969999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 742112678998886531046379999999999851
Q gi|254780711|r 307 AARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQK 342 (461)
Q Consensus 307 ~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~k 342 (461)
.++.- .-.+..-.+|.++..+.++..++
T Consensus 253 L~~~~--------g~~~~~~~lt~~e~~~~l~~~~~ 280 (285)
T PRK13636 253 LKEKD--------GFVFDELDLTISQARKTLNSWKN 280 (285)
T ss_pred HHHHC--------CCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98830--------99989997779999999999998
No 263
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=96.60 E-value=0.09 Score=33.73 Aligned_cols=166 Identities=16% Similarity=0.225 Sum_probs=92.5
Q ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEE---ECCCCCCC---HHHHHHHHHHHCC----CCCCCCCCCCCHHH-
Q ss_conf 8996234-43334688999999998614895078---20542210---0477999985103----47422233210368-
Q gi|254780711|r 102 VIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILM---ASLDVHRP---AAQEQLRYLGEQI----QVDTLEVIPEQSPE- 169 (461)
Q Consensus 102 vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~l---v~~Dt~R~---aA~eQL~~~a~~~----~v~~~~~~~~~dp~- 169 (461)
.+.+.|- +|+|||..++=||++++. .|.+|.. |.+..... .-.+-|+..+... .+..|.-....-|.
T Consensus 4 ~~fVtGTDT~VGKTv~S~aL~~~l~~-~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P~sPhl 82 (223)
T COG0132 4 RFFVTGTDTGVGKTVVSAALAQALKQ-QGYSVAGYKPVQTGSEETAENSDALVLQRLSGLDLSYELINPYRFKEPLSPHL 82 (223)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCCHH
T ss_conf 69998279996499999999999996-89705987752217877899745999998519986633543353078888477
Q ss_pred -----------HHHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHHHHHH
Q ss_conf -----------9999999999741588699833442221--12468999999851385110003101112--25688889
Q gi|254780711|r 170 -----------KIAIRATQSARDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADALTG--QDAVHLAR 234 (461)
Q Consensus 170 -----------~i~~~a~~~a~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~~~a~ 234 (461)
+.....+....+ .||.|||--||-+-. .++ .-+..+....+ ..++||...-.| ..++=.++
T Consensus 83 Aa~~eg~~I~~~~l~~~l~~l~~-~~d~vlVEGAGGl~vPl~~~--~~~~D~~~~~~-lpvILV~~~~LGtINHtlLt~e 158 (223)
T COG0132 83 AAELEGRTIDLEKLSQGLRQLLK-KYDLVLVEGAGGLLVPLTEE--YTFADLAVQLQ-LPVILVVGIKLGTINHTLLTVE 158 (223)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCEEEECCCC--CCHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHH
T ss_conf 78764893569999878885405-46789996787333325786--52999999809-9999996677577879999999
Q ss_pred HHH-HHCCCCCEEEEECCCCCCCCHHH--HHHHHHCCCHHH
Q ss_conf 887-63584407764115766330367--778884787302
Q gi|254780711|r 235 NFD-KIVDLTGIILTRMDGDGRGGAAL--SMRTVTGKPIKA 272 (461)
Q Consensus 235 ~F~-~~~~i~giIlTKlD~~akgG~al--s~~~~~~~PI~f 272 (461)
+-. ..+++-|+|+-........=... .+...++.|+..
T Consensus 159 al~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~~g 199 (223)
T COG0132 159 ALRARGLPLAGWVANGINPELDHYAEINATLLKRIGAPLLG 199 (223)
T ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99977998789997267885557888899999742897434
No 264
>CHL00176 ftsH cell division protein; Validated
Probab=96.59 E-value=0.032 Score=37.12 Aligned_cols=201 Identities=21% Similarity=0.295 Sum_probs=113.2
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99998718774210002588418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT 159 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~ 159 (461)
+|++..|...+.--.+..+.|.=+||+||.|+|||-- |+-.... .+|||
T Consensus 190 ~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlL----AkAvAgE---------------------------a~vpF 238 (631)
T CHL00176 190 EEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLL----AKAIAGE---------------------------AEVPF 238 (631)
T ss_pred HHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHH----HHHHHCC---------------------------CCCCE
T ss_conf 9999983595887644996896589889899878899----9998565---------------------------58846
Q ss_pred CCC--------CCCCHHHHHHHHHHHHHHHCCCCEEEEE---CCCCCC-------C---HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 223--------3210368999999999974158869983---344222-------1---124689999998513851100
Q gi|254780711|r 160 LEV--------IPEQSPEKIAIRATQSARDGGYDAVILD---TAGRNH-------I---NDSLMQEISEIKSLTNPHEIL 218 (461)
Q Consensus 160 ~~~--------~~~~dp~~i~~~a~~~a~~~~~D~iiiD---TaGR~~-------~---d~~lm~El~~i~~~~~p~e~~ 218 (461)
|.. ..|..+.. +++-.+.|+++.--+|+|| .-||.. + +.-|.+=|.++.. .+..+-+
T Consensus 239 ~~~sgs~F~e~~vGvga~r-VR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDG-f~~~~gV 316 (631)
T CHL00176 239 FSISGSEFVEMFVGVGAAR-VRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDG-FEGNKGV 316 (631)
T ss_pred EEEEHHHHHHHHCCHHHHH-HHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCE
T ss_conf 9988378556421555899-9999999986399699987101201147898889850899999999998428-8878886
Q ss_pred CCCCHHCCHHHHHHHH----HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 0310111225688889----887635844077641157663303677788847873026158672321001368899877
Q gi|254780711|r 219 LVADALTGQDAVHLAR----NFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRI 294 (461)
Q Consensus 219 lV~da~~Gq~a~~~a~----~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~ri 294 (461)
+|+-||.--|.++-|- .|... |.+..-|-. |=..+=-+|.-++|+. + ..+.+.+|.+-
T Consensus 317 iViaATNrpd~LDpALlRPGRFDR~-----I~V~lPD~~--gR~~IL~vh~k~~~l~--------~---dvdl~~iA~~T 378 (631)
T CHL00176 317 IVIAATNRIDILDAALLRPGRFDRQ-----VTVSLPDFE--GRLDILKVHARNKKLA--------E---DVSLELIARRT 378 (631)
T ss_pred EEEEECCCCCCCCHHHCCCCCCCEE-----EEECCCCHH--HHHHHHHHHHHCCCCC--------C---CHHHHHHHHHC
T ss_conf 9998258855456866268877549-----982698989--9999999997078666--------5---30099998626
Q ss_pred HCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 358--6278899987421126789988865310463799999999998
Q gi|254780711|r 295 LGM--GDVVSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQT 340 (461)
Q Consensus 295 LGm--gD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i 340 (461)
-|+ -|+..|+..| ..++-|-.+...+..||.+.+..+
T Consensus 379 ~GfSGAdLanlvNEA---------al~AaR~~~~~it~~d~~~AidrV 417 (631)
T CHL00176 379 PGFSGADLANLLNEA---------AILAARRRKNQITMSEIDEAIDRV 417 (631)
T ss_pred CCCCHHHHHHHHHHH---------HHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 998678887699999---------999998477764788999999999
No 265
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.027 Score=37.74 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=26.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 588418996234433346889999999986
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKT 126 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~ 126 (461)
..-|+.+||.|+.|+||||++-.+|+++-.
T Consensus 42 gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~ 71 (352)
T PRK09112 42 GRLHHALLFEGPEGIGKATLAFHLANHILS 71 (352)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 996524653589980899999999999866
No 266
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.54 E-value=0.0059 Score=42.74 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=33.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEECCCCC-CCHH
Q ss_conf 89962344333468899999999861-4895078205422-1004
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTL-KKKKILMASLDVH-RPAA 144 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~-~~~kV~lv~~Dt~-R~aA 144 (461)
+|-++|..||||||++-.|+..+.+. .+.+|.+++.|.| .+-+
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f~~~~~ 45 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNK 45 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCH
T ss_conf 989788998779999999999860026999489997878757852
No 267
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.027 Score=37.79 Aligned_cols=91 Identities=24% Similarity=0.266 Sum_probs=58.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH---------HHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC-----------
Q ss_conf 899623443334688999999998---------614895078205422100477999985103474222-----------
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLK---------TLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLE----------- 161 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~---------~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~----------- 161 (461)
+.++.|+-|+||||-.--|+-.+. -.+-.+|+.|+|..+|+-+.+-|+-.+.+++++--.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHEECCCCCC
T ss_conf 58984488623768999999999864777453355888079998226868899999999987099857632200002456
Q ss_pred CCCCCHHH--HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 33210368--99999999997415886998334
Q gi|254780711|r 162 VIPEQSPE--KIAIRATQSARDGGYDAVILDTA 192 (461)
Q Consensus 162 ~~~~~dp~--~i~~~a~~~a~~~~~D~iiiDTa 192 (461)
...++|.+ +..++-+.......+|.|+||+-
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf 787200105899999999998747874997344
No 268
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.52 E-value=0.026 Score=37.84 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 884189962344333468899999999861489507820542210
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP 142 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~ 142 (461)
.+-.++-++|+||+||||++-=++-.++-..| .|.+-..|..+.
T Consensus 24 ~~Gei~gllG~NGaGKSTLl~~i~Gl~~p~~G-~i~i~G~~~~~~ 67 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKN 67 (208)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCC
T ss_conf 69819999999999999999999578378989-999999999979
No 269
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.52 E-value=0.0074 Score=42.01 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=69.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
.||++||.||||||-..+|.. +..+.-++ +. .-++.++.... ..
T Consensus 2 tvLl~Gl~~aGKT~Lf~~L~~------~~~~~T~t--S~-------------~~n~~~~~~~~---------------~~ 45 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTT------GKYRSTVT--SI-------------EPNVATFILNS---------------EG 45 (203)
T ss_pred EEEEECCCCCCHHHHHHHHHC------CCCCCCCC--CC-------------CCCCEEEECCC---------------CC
T ss_conf 599990799989999999974------99888778--88-------------78620664024---------------66
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
Q ss_conf 158869983344222112468999999851385110003101112-2568888988763584407764115766330367
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAAL 260 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~al 260 (461)
.+.-+-++|++|.......+.+.+ ... ..-+++|+||.+= ++.-+.|+-.++.+-..-.
T Consensus 46 ~~~~~~lvD~PGH~klR~~~~~~~---~~~--~~gIVfvVDs~~~~~~l~~~Ae~Ly~iL~~~~~--------------- 105 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETL---KNS--AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEK--------------- 105 (203)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHH---HHC--CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH---------------
T ss_conf 872799998799688999999998---754--989999996887511199999999999862664---------------
Q ss_pred HHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 77888478730261586723210013688998773
Q gi|254780711|r 261 SMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL 295 (461)
Q Consensus 261 s~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL 295 (461)
...++||...++=+.. ---.|...+...|
T Consensus 106 ---~~~~iPvLIacNKqDl---~tA~~~~~Ik~~L 134 (203)
T cd04105 106 ---VKNKIPVLIACNKQDL---FTAKPAKKIKEQL 134 (203)
T ss_pred ---CCCCCCEEEEEECCCC---CCCCCHHHHHHHH
T ss_conf ---3689988999866143---4578999999999
No 270
>pfam00931 NB-ARC NB-ARC domain.
Probab=96.50 E-value=0.037 Score=36.68 Aligned_cols=23 Identities=48% Similarity=0.603 Sum_probs=18.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 841899623443334688999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAY 122 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~ 122 (461)
...||-++|.-|+|||| +||..+
T Consensus 18 ~~~vI~I~G~gGiGKTt-LA~~v~ 40 (285)
T pfam00931 18 NLGVVGIVGMGGVGKTT-LAKQIY 40 (285)
T ss_pred CCEEEEEECCCCCCHHH-HHHHHH
T ss_conf 95399988999563999-999997
No 271
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.48 E-value=0.11 Score=33.15 Aligned_cols=108 Identities=18% Similarity=0.212 Sum_probs=57.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECC----------CCC---CCHHHHHHHHHHHCCC-------C
Q ss_conf 8841899623443334688999999998614895078205----------422---1004779999851034-------7
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASL----------DVH---RPAAQEQLRYLGEQIQ-------V 157 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~----------Dt~---R~aA~eQL~~~a~~~~-------v 157 (461)
.+..+++||||.|+|||+-+--+|.-+- ++-.++.+... -|| -||-+=|--.-|...| +
T Consensus 347 ~kg~IlclvGpPGvGKTSl~~sIA~al~-r~f~rislGGv~DeaeirGHrrTYvgampGrii~~l~~a~~~nPv~llDEi 425 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATG-RKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEI 425 (784)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHH
T ss_conf 7787799646998772469999999858-986998068878888825643343443683899999974898856650035
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHC---------CCC---EEEEECCCCCCCHHHHHHHHH
Q ss_conf 4222332103689999999999741---------588---699833442221124689999
Q gi|254780711|r 158 DTLEVIPEQSPEKIAIRATQSARDG---------GYD---AVILDTAGRNHINDSLMQEIS 206 (461)
Q Consensus 158 ~~~~~~~~~dp~~i~~~a~~~a~~~---------~~D---~iiiDTaGR~~~d~~lm~El~ 206 (461)
+=.+.....||++..-+-++.-... .|| |++|-||--+..-..|.+.|+
T Consensus 426 DK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~~~ip~pLlDRmE 486 (784)
T PRK10787 426 DKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRME 486 (784)
T ss_pred HHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEEEEEECCCCCCCHHHHHHEE
T ss_conf 5522455899889999845976556400032204645222589973276778767763121
No 272
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.48 E-value=0.012 Score=40.33 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 884189962344333468899999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIA 121 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA 121 (461)
++...|+++|+.||||||-+-+|.
T Consensus 15 ~ke~~ililGLd~aGKTTil~~lk 38 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLK 38 (184)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 661479999658898899999980
No 273
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.48 E-value=0.029 Score=37.45 Aligned_cols=178 Identities=19% Similarity=0.262 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999999871877421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r 76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI 155 (461)
Q Consensus 76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~ 155 (461)
.-+.++|.+++......-.+.. ...+.++|..-+||.+-.- .|.. +-.++|+
T Consensus 195 ~~~~~~l~~ll~~~~~g~ilr~--G~kvvIiG~PNvGKSSLLN----aL~~---~d~AIVT------------------- 246 (454)
T COG0486 195 EELIAELDELLATAKQGKILRE--GLKVVIIGRPNVGKSSLLN----ALLG---RDRAIVT------------------- 246 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC--CCEEEEECCCCCCHHHHHH----HHHC---CCCEEEC-------------------
T ss_conf 9999999999974442136645--8649998799886799999----8866---7866742-------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-HHHCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCHHHHH
Q ss_conf 47422233210368999999999-974158869983344222112468999---99985138511000310111225688
Q gi|254780711|r 156 QVDTLEVIPEQSPEKIAIRATQS-ARDGGYDAVILDTAGRNHINDSLMQEI---SEIKSLTNPHEILLVADALTGQDAVH 231 (461)
Q Consensus 156 ~v~~~~~~~~~dp~~i~~~a~~~-a~~~~~D~iiiDTaGR~~~d~~lm~El---~~i~~~~~p~e~~lV~da~~Gq~a~~ 231 (461)
++| |.. ++.++. ..-+++-+.|+||||--..+ +.++.+ +....+-+.|-+++|+|+...-+..+
T Consensus 247 dI~------GTT-----RDviee~i~i~G~pv~l~DTAGiRet~-d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d 314 (454)
T COG0486 247 DIA------GTT-----RDVIEEDINLNGIPVRLVDTAGIRETD-DVVERIGIERAKKAIEEADLVLFVLDASQPLDKED 314 (454)
T ss_pred CCC------CCC-----CCEEEEEEEECCEEEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHH
T ss_conf 899------974-----103789999898899998567766673-48999999999999985998999970887776011
Q ss_pred HHHHHHHHCCC---CCEEEEECCCCCCCC-HHHHHHHHHCCCHHHEE--CCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 88988763584---407764115766330-36777888478730261--586723210013688998773586
Q gi|254780711|r 232 LARNFDKIVDL---TGIILTRMDGDGRGG-AALSMRTVTGKPIKAIG--TGEKINDLENFFPDRIANRILGMG 298 (461)
Q Consensus 232 ~a~~F~~~~~i---~giIlTKlD~~akgG-~als~~~~~~~PI~fig--~GE~~~dle~F~p~~~~~riLGmg 298 (461)
. .+-+.++- .=+|++|.|=..+.= .-+ ....+.|+..++ +||.+++|+.-=-..|-.. ++-.
T Consensus 315 ~--~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~--~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~-~~~~ 382 (454)
T COG0486 315 L--ALIELLPKKKPIIVVLNKADLVSKIELESE--KLANGDAIISISAKTGEGLDALREAIKQLFGKG-LGNQ 382 (454)
T ss_pred H--HHHHHCCCCCCEEEEEECHHCCCCCCCCHH--HCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-CCCC
T ss_conf 7--788724368977999960211564321012--026788269998257657999999999998630-1565
No 274
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=96.46 E-value=0.039 Score=36.53 Aligned_cols=115 Identities=24% Similarity=0.258 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 43334688999999998614895078205422100477999985103474222332103689999999999741588699
Q gi|254780711|r 109 QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVI 188 (461)
Q Consensus 109 ~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~ii 188 (461)
+|+|||...+-|+++++. .|++|... .|- +.||+++
T Consensus 8 T~VGKT~vt~~l~~~l~~-~G~~v~~~-----KPv--------------------------------------~t~D~vl 43 (134)
T cd03109 8 TDIGKTVATAILARALKE-KGYRVAPL-----KPV--------------------------------------QTYDFVL 43 (134)
T ss_pred CCCCHHHHHHHHHHHHHH-CCCCEEEE-----CHH--------------------------------------HCCCEEE
T ss_conf 887689999999999997-79917787-----566--------------------------------------7279899
Q ss_pred EECCCCCCC--H-HHHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHHHHHHHH-HHHCCCCCEEEEECCCCCC--CCHHH
Q ss_conf 833442221--1-2468999999851385110003101112--2568888988-7635844077641157663--30367
Q gi|254780711|r 189 LDTAGRNHI--N-DSLMQEISEIKSLTNPHEILLVADALTG--QDAVHLARNF-DKIVDLTGIILTRMDGDGR--GGAAL 260 (461)
Q Consensus 189 iDTaGR~~~--d-~~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~~~a~~F-~~~~~i~giIlTKlD~~ak--gG~al 260 (461)
|.-||-... + +.++..+ .+..+ ..++||.++-.| ..++-.+++- +..+++-|+|+...+.+.- --.+-
T Consensus 44 VEGaGG~~vPl~~~~~~~Dl---~~~l~-~pvIlV~~~~LG~INhtlLt~eal~~~gi~v~G~i~N~~~~~~~~~~~N~~ 119 (134)
T cd03109 44 VEGAGGLCVPLKEDFTNADV---AKELN-LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNVE 119 (134)
T ss_pred EECCCCEEECCCCCCCHHHH---HHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 98897746003898629999---99709-998999778878589999999999987992889999467997106787599
Q ss_pred HHHHHHCCCHH
Q ss_conf 77888478730
Q gi|254780711|r 261 SMRTVTGKPIK 271 (461)
Q Consensus 261 s~~~~~~~PI~ 271 (461)
.+...++.|+.
T Consensus 120 ~I~~~t~vPvL 130 (134)
T cd03109 120 TIERLTGIPVL 130 (134)
T ss_pred HHHHHHCCCEE
T ss_conf 99997499977
No 275
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.46 E-value=0.04 Score=36.43 Aligned_cols=198 Identities=17% Similarity=0.241 Sum_probs=99.0
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 25884189962344333468899999999861489507820542210047799998510347422233210368999999
Q gi|254780711|r 96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA 175 (461)
Q Consensus 96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a 175 (461)
.-..|.=|||.||.|+|||..+--+|..+. ....-+. +-+= +..+.|. ....+++.
T Consensus 162 Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~----~~fi~v~-------~s~l------------~sk~vGe-sek~vr~l 217 (390)
T PRK03992 162 GIEPPKGVLLYGPPGTGKTLLAKAVAHETN----ATFIRVV-------GSEL------------VQKFIGE-GARLVREL 217 (390)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHC----CCEEEEE-------HHHH------------HHCCCCH-HHHHHHHH
T ss_conf 999997278689899978999999998748----8879966-------7997------------5245417-99999999
Q ss_pred HHHHHHCCCCEEEEECC---C--CC--------CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC
Q ss_conf 99997415886998334---4--22--------21124689999998513851100031011122568888988763584
Q gi|254780711|r 176 TQSARDGGYDAVILDTA---G--RN--------HINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDL 242 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTa---G--R~--------~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i 242 (461)
.+.|+...--+|+||-. | |. ..+.-+++=|..+.. ..+..-++|+-||.--+.++-|-. ..=-+
T Consensus 218 F~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG-~~~~~~V~VIaATNrpd~LDpAll--RpGRF 294 (390)
T PRK03992 218 FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG-FDPRGNVKIIAATNRPDILDPALL--RPGRF 294 (390)
T ss_pred HHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCEEEEEECCCCHHCCHHHH--CCCCC
T ss_conf 999997099089714325663356778886208899999999997448-777788279960698100597775--47765
Q ss_pred CCEEEE-ECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 407764-1157663303677788847873026158672321001368899877358--6278899987421126789988
Q gi|254780711|r 243 TGIILT-RMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM--GDVVSLVEKAARNLNEKQAALT 319 (461)
Q Consensus 243 ~giIlT-KlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm--gD~~~l~e~~~~~~d~~~~~~l 319 (461)
+..|-- --|..+|- .+|.+ +.-+.|+ . +..+-+.+|.+--|+ .|+..++..|-- .
T Consensus 295 Dr~I~iplPd~~~R~-~Ilki-~~~~~~l-----~------~dvdl~~lA~~T~G~SGADI~~lc~EA~m---------~ 352 (390)
T PRK03992 295 DRIIEVPLPDEEGRL-EILKI-HTRKMNL-----A------DDVDLEELAELTEGASGADLKAICTEAGM---------F 352 (390)
T ss_pred CEEEEECCCCHHHHH-HHHHH-HHCCCCC-----C------CCCCHHHHHHHCCCCCHHHHHHHHHHHHH---------H
T ss_conf 238870894999999-99999-8479999-----9------88899999976879989999999999999---------9
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 86531046379999999999851
Q gi|254780711|r 320 AKKIAKGKFDLEDLAEQFRQTQK 342 (461)
Q Consensus 320 ~~k~~~g~F~l~Df~~Ql~~i~k 342 (461)
+-+=.....+.+||.+-++.+..
T Consensus 353 Air~~r~~i~~~Df~~Ai~kv~~ 375 (390)
T PRK03992 353 AIRDDRTEVTMEDFLKAIEKVMG 375 (390)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 99858986089999999999967
No 276
>PRK10436 hypothetical protein; Provisional
Probab=96.46 E-value=0.0053 Score=43.13 Aligned_cols=208 Identities=17% Similarity=0.105 Sum_probs=94.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054--2210047799998510347422233210368999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD--VHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D--t~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
-.|+++||+|||||||..-+-.++.. .++++.-+. | -|+...+.|.+... ..+.+-+ .++..
T Consensus 216 GliLvtGPTGSGKTTTLya~L~~l~~-~~~~I~TiE-DPVE~~l~gi~Q~~vn~----------~~g~tfa----~~lrs 279 (461)
T PRK10436 216 GLVLVTGPTGSGKTVTLYSALQTLNT-AQINICSVE-DPVEIPLAGINQTQIHP----------RAGLTFQ----RVLRA 279 (461)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEE-CCCCCCCCCCCCCEECC----------CCCHHHH----HHHHH
T ss_conf 77999789999569999999974346-771699960-77435546754523132----------2131399----99999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC---------CCCEEEEE
Q ss_conf 974158869983344222112468999999851385110003101112256888898876358---------44077641
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD---------LTGIILTR 249 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~---------i~giIlTK 249 (461)
+-.+.-|+|+|.--- |.+-.+ ..+..+..- +||+...--.+|......+.+ .+ +.|||--+
T Consensus 280 ~LRqDPDVImvGEIR----D~eTA~--~Ai~AAlTG---HLVlsTlHtnda~~ai~RL~~-mgi~~~lla~~L~~ViaQR 349 (461)
T PRK10436 280 LLRQDPDVIMVGEIR----DGETAE--IAIKAAQTG---HLVLSTLHTNSTSETLIRLQQ-MGVARWMISSALTLVIAQR 349 (461)
T ss_pred HHCCCCCEEEECCCC----CHHHHH--HHHHHHHHC---CEEEEEECCCCHHHHHHHHHH-CCCCHHHHHHHHHHEEECC
T ss_conf 874699999865778----899999--999999719---848898626977889999998-3998889998663347750
Q ss_pred C----CCCCC-------------CCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHH-HHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 1----57663-------------303677788847873026158672321001368-89987735862788999874211
Q gi|254780711|r 250 M----DGDGR-------------GGAALSMRTVTGKPIKAIGTGEKINDLENFFPD-RIANRILGMGDVVSLVEKAARNL 311 (461)
Q Consensus 250 l----D~~ak-------------gG~als~~~~~~~PI~fig~GE~~~dle~F~p~-~~~~riLGmgD~~~l~e~~~~~~ 311 (461)
| -.+-| ....+......|+|-.+-|.--+.-=+|.+..+ .+...|..-.+...+.+.|.+.=
T Consensus 350 LVR~LCp~Ck~~~~~~~~~~~~~~~~~~~~~~~~GC~~C~tGY~GR~~i~Evl~~d~~ir~~I~~~~~~~~i~~~a~~~G 429 (461)
T PRK10436 350 LVRKLCPHCRQQQSEPVHLPANIWPSPLPHWQAVGCEHCYHGFYGRTALFEVLPVTPAIRQLIASNASPEELETHARQQG 429 (461)
T ss_pred CCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 34323733278667542101330434332025788733389988601899998389999999983999999999999869
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 26789988865310463799999
Q gi|254780711|r 312 NEKQAALTAKKIAKGKFDLEDLA 334 (461)
Q Consensus 312 d~~~~~~l~~k~~~g~F~l~Df~ 334 (461)
-..=.+.-.+++..|.-|++..+
T Consensus 430 m~tl~~~g~~kv~~G~Ts~eEv~ 452 (461)
T PRK10436 430 MTTLFENGCLAVEQGLTTLEEII 452 (461)
T ss_pred CHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 92299999999985999899999
No 277
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=96.46 E-value=0.011 Score=40.68 Aligned_cols=135 Identities=18% Similarity=0.294 Sum_probs=72.3
Q ss_pred CCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHH-
Q ss_conf 884-189962344333468899999999861489507820542210047799998510347422233--2103689999-
Q gi|254780711|r 98 PSP-LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI--PEQSPEKIAI- 173 (461)
Q Consensus 98 ~~p-~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~--~~~dp~~i~~- 173 (461)
.+| ..|.++|---+||||.++-|.+- . |. + | ...+++++.-++..|-+-+... ....|.+-.+
T Consensus 4 ~K~~l~i~~~GhVD~GKSTL~G~Ll~~---~-g~-~-----~---~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rG 70 (426)
T PRK12317 4 EKPHLNLAVIGHVDHGKSTLVGRLLYE---T-GA-V-----D---EHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERG 70 (426)
T ss_pred CCCEEEEEEEEECCCCHHHHHHHHHHH---C-CC-C-----C---HHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCC
T ss_conf 897849999952287688887689877---2-99-4-----4---89999999899864877521432125786687558
Q ss_pred ----HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHHHHHHH---HHHHCCCCC
Q ss_conf ----9999997415886998334422211246899999985138511000310111--2256888898---876358440
Q gi|254780711|r 174 ----RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAVHLARN---FDKIVDLTG 244 (461)
Q Consensus 174 ----~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~~~a~~---F~~~~~i~g 244 (461)
-+..++...++.+.|||++|--..=.++ +..+..+|-.+||+||.- |-. .|.+. -...+++..
T Consensus 71 iTid~~~~~f~~~~~~~~iiD~PGH~~fi~nm------i~Gas~~D~ailvV~A~~~~G~~--~QT~eHl~l~~~lgi~~ 142 (426)
T PRK12317 71 VTIDLAHKKFETDKYYFTIIDCPGHRDFVKNM------ITGASQADAAVLVVSARDAGGVM--PQTREHVFLARTLGINQ 142 (426)
T ss_pred CEEEEEEEEEECCCCEEEEEECCCCHHHHHHH------HHHHCCCCEEEEEEECCCCCCCC--HHHHHHHHHHHHHCCCE
T ss_conf 27883169995498169998789636678778------74534677279999636566764--77899999999809983
Q ss_pred -E-EEEECCCC
Q ss_conf -7-76411576
Q gi|254780711|r 245 -I-ILTRMDGD 253 (461)
Q Consensus 245 -i-IlTKlD~~ 253 (461)
+ .+||+|-.
T Consensus 143 iiV~vnKmD~v 153 (426)
T PRK12317 143 LIVAINKMDAV 153 (426)
T ss_pred EEEEEECCCCC
T ss_conf 99999533356
No 278
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.46 E-value=0.037 Score=36.69 Aligned_cols=201 Identities=15% Similarity=0.206 Sum_probs=97.7
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC--------
Q ss_conf 100025884189962344333468899999999861489507820542210047799998510347422233--------
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-------- 163 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-------- 163 (461)
.+...++ .++.++|+|||||||.+--|+..++-..| +|.+-..|...-..-..++.+.+++++=| ..+
T Consensus 27 sl~I~~G--e~~aiiG~nGsGKSTLl~~l~GLl~p~~G-~I~~~g~~i~~~~~~~~~~~~r~~ig~Vf-Q~P~~ql~~~t 102 (286)
T PRK13646 27 NTEFEQG--KYYAIVGQTGSGKSTLIQNINALLKPTTG-TVTVDDITITHKTKDKYIRPVRKRIGMVF-QFPESQLFEDT 102 (286)
T ss_pred EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHHHHHCEEEEE-ECCHHHHHHHH
T ss_conf 7798699--89999999998199999999707888887-59999898755574678999874089999-88402220778
Q ss_pred -----------CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHHH
Q ss_conf -----------2103689999999999741588699833442221--12468999999851385110003101-112256
Q gi|254780711|r 164 -----------PEQSPEKIAIRATQSARDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADA-LTGQDA 229 (461)
Q Consensus 164 -----------~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~a 229 (461)
.+-++.++..++.+....-+.. -|-..|.+. ... ..+--.|..++--+--+|++|= ++|.|.
T Consensus 103 V~~~i~fg~~~~g~~~~e~~~r~~~~l~~~gl~---~~~~~~~p~~LSGG-qkqRVaiA~aLa~~P~iLilDEPTagLDp 178 (286)
T PRK13646 103 VEREMIFGPKNFKMNLDEAKNYAHRLLMDLGFS---RDVMSQSPFQMSGG-QMRKIAIVSILAMNPDIIVVDEPTAGLDP 178 (286)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC---HHHHHCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 999998679777999999999999999984994---75775694329999-99999999998519899998387443898
Q ss_pred HH------HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCC-CHHHHHHHHHCCCC
Q ss_conf 88------88988763584407764115766330367778884787302615867232---1001-36889987735862
Q gi|254780711|r 230 VH------LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENF-FPDRIANRILGMGD 299 (461)
Q Consensus 230 ~~------~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F-~p~~~~~riLGmgD 299 (461)
.. ..+..++..+.|=+++|-= +..+...---|..+..|+-+.+ -|.| +|+.+.+.=|....
T Consensus 179 ~~~~~i~~ll~~l~~~~g~TiI~iTHd---------m~~v~~~adrv~vm~~G~Iv~~G~p~evf~~~~~l~~~~l~~P~ 249 (286)
T PRK13646 179 QSKRQVMRLLKSLQTDENKAIILISHD---------MNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLPE 249 (286)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCC---------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCH
T ss_conf 999999999999999539899999138---------99999969999999898999977899997796579878999984
Q ss_pred HHHHHHHHHH
Q ss_conf 7889998742
Q gi|254780711|r 300 VVSLVEKAAR 309 (461)
Q Consensus 300 ~~~l~e~~~~ 309 (461)
+..|....++
T Consensus 250 ~~~l~~~l~~ 259 (286)
T PRK13646 250 IVQLQYDFEQ 259 (286)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 279
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.45 E-value=0.021 Score=38.61 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=94.7
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 10002588418996234433346889999999986148950782054221004779999851034742223321036899
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKI 171 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i 171 (461)
.+...++ -++.++|.|||||||++-=|+..+....| +|.+-.-|+.. ..+..+.++++. +|..+...-+...
T Consensus 27 s~~i~~G--e~~aiiG~sGsGKSTL~~~l~Gl~~~~~G-~I~~~G~~i~~----~~~~~~r~~ig~-VfQ~p~~~l~~~t 98 (277)
T PRK13642 27 SFSITKG--EWVSIIGQNGSGKSTTARLIDGLFEEFEG-IVKIDGERLTA----ENVWNLRRKIGM-VFQNPDNQFVGAT 98 (277)
T ss_pred EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCC----CCHHHHHCCCEE-EEECCCCCCCCCC
T ss_conf 7998899--89999999996899999999638998884-89999999985----788888517689-9989763257550
Q ss_pred HHHHHHHHHHC-CC--------------CEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHHH
Q ss_conf 99999999741-58--------------8699833442221124-6899999985138511000310-111225688889
Q gi|254780711|r 172 AIRATQSARDG-GY--------------DAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLAR 234 (461)
Q Consensus 172 ~~~a~~~a~~~-~~--------------D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a~ 234 (461)
+++-+.+...+ ++ .+=+.|-..|.+.+=. =..+--.|..+.-.+--+|++| .++|.|...+.+
T Consensus 99 V~e~i~~g~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~P~~LSGGqrQRvaIA~aLa~~P~ililDEPTs~LD~~~~~~ 178 (277)
T PRK13642 99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRSE 178 (277)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 88889877766699999999999999987799656557912289999999999999966999999958876589899999
Q ss_pred HH------HHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCC-CHHHHHHHHHCCCCHHHHH
Q ss_conf 88------763584407764115766330367778884787302615867232---1001-3688998773586278899
Q gi|254780711|r 235 NF------DKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENF-FPDRIANRILGMGDVVSLV 304 (461)
Q Consensus 235 ~F------~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F-~p~~~~~riLGmgD~~~l~ 304 (461)
.+ ++..++|-+++|- | +..+.. ---|.++--|+-+.+ =|.| +|+.+...=|--..+..|.
T Consensus 179 i~~ll~~L~~~~~~Tii~iTH-d--------l~~~~~-aDrv~vm~~G~Iv~~G~~~evf~~p~~l~~~~l~~P~~~~l~ 248 (277)
T PRK13642 179 IMRVIHEIKDKYHLTVLSITH-D--------LDEAAS-SDRILVMRAGEIIKEAAPSELFATSEDMVEIGLDVPFSSNLM 248 (277)
T ss_pred HHHHHHHHHHHCCCEEEEEEE-C--------HHHHHH-CCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHH
T ss_conf 999999999816989999945-8--------899971-998999989999997689998769677987799998799999
Q ss_pred HHH
Q ss_conf 987
Q gi|254780711|r 305 EKA 307 (461)
Q Consensus 305 e~~ 307 (461)
++.
T Consensus 249 ~~L 251 (277)
T PRK13642 249 KDL 251 (277)
T ss_pred HHH
T ss_conf 999
No 280
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.44 E-value=0.11 Score=32.96 Aligned_cols=219 Identities=16% Similarity=0.182 Sum_probs=92.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCCHHHHHHH
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742223----32103689999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV----IPEQSPEKIAI 173 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~i~~ 173 (461)
.-++.++|+|+.|+||||++-=||+.+--..|- ---.|.+ -+--+...+---++++.. ..+-|-..-..
T Consensus 36 r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~--~~~pcg~-----c~~c~~i~~g~~~d~~eidaas~~~vd~~rel~ 108 (643)
T PRK07994 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--TATPCGV-----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL 108 (643)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 866348745899888889999999996799999--9997876-----776898865898875886367778889999999
Q ss_pred HHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH----------
Q ss_conf 9999997-415886998334422211246899999985138511000310111225-----688889887----------
Q gi|254780711|r 174 RATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD---------- 237 (461)
Q Consensus 174 ~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~---------- 237 (461)
+.+.|+- ...|-|.|||-.-.+.... +.-|-+..+. .|.++.|++ |+|.-+ .+.-+..|+
T Consensus 109 ~~~~y~p~~~r~kvyiidEvhmls~~a--fnalLKtlEe-Pp~hv~fil-aTT~~~k~p~TilSRC~~f~~~~~~~~~i~ 184 (643)
T PRK07994 109 DNVQYAPARGRFKVYLIDEVHMLSRHS--FNALLKTLEE-PPAHVKFLL-ATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 (643)
T ss_pred HHCCCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHHCC-CCHHCEEEE-ECCCHHHCCHHHHHHHHHEECCCCCHHHHH
T ss_conf 844668877853699972210158999--9999986237-861008998-607745484789977765001669999999
Q ss_pred ---------HHCCCCCEEEEECCCCCCCC--HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf ---------63584407764115766330--3677788847873026158672321001368899877358627889998
Q gi|254780711|r 238 ---------KIVDLTGIILTRMDGDGRGG--AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEK 306 (461)
Q Consensus 238 ---------~~~~i~giIlTKlD~~akgG--~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~ 306 (461)
+.+.++---+..+--.|.|+ -+||+... -|.| |.|. ++ +.-+..+||.-|---+++-
T Consensus 185 ~~l~~i~~~e~i~~~~~al~~ia~~a~gs~rdalsl~dq---~i~~-~~~~-~~-------~~~v~~mlg~~d~~~~~~l 252 (643)
T PRK07994 185 HQLEHILNEEHIAHEPRALQLLARAADGSLRDALSLTDQ---AIAS-GDGQ-VS-------TQAVSAMLGTLDDDQALSL 252 (643)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH---HHHH-CCCC-CC-------HHHHHHHHCCCCHHHHHHH
T ss_conf 999999997599878899999999747865668889999---9986-5897-47-------9999998589987899999
Q ss_pred HHHHHHHHHH--HHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 7421126789--98886531046379999999999
Q gi|254780711|r 307 AARNLNEKQA--ALTAKKIAKGKFDLEDLAEQFRQ 339 (461)
Q Consensus 307 ~~~~~d~~~~--~~l~~k~~~g~F~l~Df~~Ql~~ 339 (461)
.....+.+-. -...+++..-.-+|+.++..+-.
T Consensus 253 l~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~ 287 (643)
T PRK07994 253 VEALVEANGERVMALINEAAARGIEWEALLVEMLS 287 (643)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999569999999999999868899999999999
No 281
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.44 E-value=0.022 Score=38.40 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=61.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
..=+.+.|..|+|||--+|-+|+.+.+ .|.+|.++...+| +..|+.- |..... .+-++..
T Consensus 157 ~kGlyl~G~~G~GKTyL~~aian~La~-~g~~v~~v~~p~~----~~~lK~s--------~~d~s~-------~~~i~~~ 216 (306)
T PRK08939 157 VKGLYLYGDFGVGKTYLLAAIANELAK-KGVSSTLVHFPEF----IRELKNA--------ISDGSV-------KEKIDAV 216 (306)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEHHHH----HHHHHHH--------HCCCCH-------HHHHHHH
T ss_conf 877889899999899999999999998-6992999875999----9999998--------648988-------9999998
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 7415886998334422211246899999
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISE 207 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~ 207 (461)
+ .+|++++|--|--....+..+|+-.
T Consensus 217 k--~~~vLiLDDiGaE~~t~W~rd~vl~ 242 (306)
T PRK08939 217 K--EAPVLMLDDIGAEQMSSWVRDEVLG 242 (306)
T ss_pred H--CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 4--4998998444654267778998999
No 282
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.43 E-value=0.0057 Score=42.88 Aligned_cols=72 Identities=26% Similarity=0.406 Sum_probs=50.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
+.+|-+||-.||||||.+.||...|+. +|.+|+.+=-|.++ ..+ ..+++|.-. +
T Consensus 1 mkii~ivG~snSGKTTLi~kli~~l~~-~G~~V~~iKH~~H~-------------f~~----D~~GkDS~r--------~ 54 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSA-RGLRVAVIKHDHHD-------------FDI----DTPGKDSYR--------H 54 (159)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCC-------------CCC----CCCCCHHHH--------H
T ss_conf 929999967999999999999999997-79859899734767-------------777----789844177--------6
Q ss_pred HHCCCCEEEEECCCCCCC
Q ss_conf 741588699833442221
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHI 197 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~ 197 (461)
+.-+.+.++|=+++|...
T Consensus 55 ~~AGA~~v~v~s~~~~~l 72 (159)
T cd03116 55 REAGAEEVLVSSPRRWAL 72 (159)
T ss_pred HHCCCCEEEEECCCEEEE
T ss_conf 752973799975671887
No 283
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=96.41 E-value=0.044 Score=36.07 Aligned_cols=28 Identities=36% Similarity=0.563 Sum_probs=23.6
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 23443334688999999998614895078
Q gi|254780711|r 106 VGLQGSGKTTTTAKIAYHLKTLKKKKILM 134 (461)
Q Consensus 106 vGl~GsGKTTT~aKLA~~~~~~~~~kV~l 134 (461)
=|+-||||||-+..|+.+|.. .|.+|.+
T Consensus 2 EGiDGsGKsTq~~~L~~~L~~-~g~~v~~ 29 (186)
T pfam02223 2 EGLDGAGKTTQAELLKERLKE-QGIKVVL 29 (186)
T ss_pred CCCCCCCHHHHHHHHHHHHHH-CCCEEEE
T ss_conf 799998999999999999998-7990899
No 284
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.40 E-value=0.0039 Score=44.13 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=38.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf 9623443334688999999998614895078205422100477
Q gi|254780711|r 104 MLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE 146 (461)
Q Consensus 104 llvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e 146 (461)
+++||.|+||||-+-.|..++....|..|++|+-|-+.|.++.
T Consensus 3 VLcGLPaAGKTTLar~L~~~l~~~~gw~v~vI~YDdlIp~~~~ 45 (340)
T TIGR03575 3 VLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAF 45 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHH
T ss_conf 4326987873689999999986444760589862121425453
No 285
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=96.39 E-value=0.049 Score=35.75 Aligned_cols=121 Identities=17% Similarity=0.262 Sum_probs=65.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
+.-.|.++|..-|||.|-+-.|. |.++.+|+- +|+ ..+-.+ .+..
T Consensus 7 ksG~VaivG~PNvGKSTL~N~l~-------~~k~siVS~---k~~--------TTR~~i--~gi~--------------- 51 (296)
T PRK00089 7 KSGFVAIVGRPNVGKSTLLNALV-------GQKISIVSP---KPQ--------TTRHRI--RGIV--------------- 51 (296)
T ss_pred CEEEEEEECCCCCCHHHHHHHHH-------CCCEEEECC---CCC--------CCCCCE--EEEE---------------
T ss_conf 37999999899988899999996-------896176149---599--------872838--9999---------------
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC-CCCCCCCCCCHHCCH--HHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 97415886998334422211246899999-98513-851100031011122--568888988763584407764115766
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISE-IKSLT-NPHEILLVADALTGQ--DAVHLARNFDKIVDLTGIILTRMDGDG 254 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~-i~~~~-~p~e~~lV~da~~Gq--~a~~~a~~F~~~~~i~giIlTKlD~~a 254 (461)
...++.++++||+|-+.....+-+.+.+ ...++ ..|-++||+||..+- +....++...+.----=++++|.|--.
T Consensus 52 -~~~~~q~i~iDTpGi~~~~~~l~~~~~~~~~~ai~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNKiDlv~ 130 (296)
T PRK00089 52 -TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVD 130 (296)
T ss_pred -EECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCC
T ss_conf -9799799999899866746778789999999999759999999857889898899999988874998899954788428
Q ss_pred C
Q ss_conf 3
Q gi|254780711|r 255 R 255 (461)
Q Consensus 255 k 255 (461)
+
T Consensus 131 k 131 (296)
T PRK00089 131 K 131 (296)
T ss_pred H
T ss_conf 9
No 286
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=96.39 E-value=0.025 Score=38.05 Aligned_cols=144 Identities=20% Similarity=0.247 Sum_probs=77.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
+|.++|-.-|||.|-.-+|. +++.++|+ |+ -|+.- |... ..+.-
T Consensus 3 ~VaIvGrpNvGKStLfN~l~-------~~~~aIv~-~~---------------~G~TR-------D~~~------~~~~~ 46 (438)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLT-------GKRDAIVA-DT---------------PGVTR-------DRIY------GEAEW 46 (438)
T ss_pred EEEEECCCCCCHHHHHHHHH-------CCCEEEEC-CC---------------CCCCC-------CCEE------EEEEE
T ss_conf 89998999987899999986-------88618715-98---------------99984-------7158------99999
Q ss_pred CCCCEEEEECCCCCCCHHH-HHHHHH-HHHHHC-CCCCCCCCCCHHCC--HHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 1588699833442221124-689999-998513-85110003101112--256888898876358440776411576633
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDS-LMQEIS-EIKSLT-NPHEILLVADALTG--QDAVHLARNFDKIVDLTGIILTRMDGDGRG 256 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~-lm~El~-~i~~~~-~p~e~~lV~da~~G--q~a~~~a~~F~~~~~i~giIlTKlD~~akg 256 (461)
.++.+.||||||-...+.+ +.+.+. +...++ +.|-++||+||..| .+-.+.|+-..+.-.--=+++-|+|+....
T Consensus 47 ~~~~~~lvDT~G~~~~~~~~~~~~i~~q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~~ 126 (438)
T PRK00093 47 LGREFIVIDTGGIDPGDEDGFEKQMREQALLAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGKKME 126 (438)
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf 99289999897989888207999999999999985899999983776898789999999997399789999755663203
Q ss_pred CHHHHHHHHHCCC-HHHEE--CCCCCCCC
Q ss_conf 0367778884787-30261--58672321
Q gi|254780711|r 257 GAALSMRTVTGKP-IKAIG--TGEKINDL 282 (461)
Q Consensus 257 G~als~~~~~~~P-I~fig--~GE~~~dl 282 (461)
- ..+=.+..|.. +.+|+ .|..++||
T Consensus 127 ~-~~~ef~~LGf~~~i~iSA~h~~Gi~~L 154 (438)
T PRK00093 127 A-DAYEFYSLGLGEPYPISAEHGRGIGDL 154 (438)
T ss_pred H-HHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf 4-599999836898188853056698999
No 287
>PRK00007 elongation factor G; Reviewed
Probab=96.39 E-value=0.013 Score=40.25 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=71.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE-----CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 418996234433346889999999986148950782-----054221004779999851034742223321036899999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMA-----SLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR 174 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv-----~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~ 174 (461)
-.-|.++|--++||||.+=.|-++--. -.+.+=| .+|. -..||-+ ++.+.+. ++.+.+
T Consensus 10 IRNi~IiaHvd~GKTTL~e~lL~~sg~--i~~~G~v~~g~t~~D~---~~~E~eR------gITI~s~-----~~s~~~- 72 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGV--SHKIGEVHDGAATMDW---MEQEQER------GITITSA-----ATTCFW- 72 (693)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC--CCCCCEECCCCCCCCC---CHHHHHC------CCCEEEC-----EEEEEE-
T ss_conf 709999916999989999999996698--4658424389855678---2889976------9887322-----254882-
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999997415886998334422211246899999985138511000310111225-----688889887635844077641
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFDKIVDLTGIILTR 249 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~~~~~i~giIlTK 249 (461)
...|-+=||||.|- .| -..|...-.+++ |-.++|+||.-|=. ...+|... .++ .=+++.|
T Consensus 73 ------~~~~~iNlIDTPGH--vD--F~~Ev~~aLrv~--DgAvlVvDav~GV~~qT~~v~r~a~~~--~lp-~i~fINK 137 (693)
T PRK00007 73 ------KDGHRINIIDTPGH--VD--FTIEVERSLRVL--DGAVAVFCAVGGVEPQSETVWRQADKY--KVP-RIVFVNK 137 (693)
T ss_pred ------CCCEEEEEEECCCC--CC--HHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHHHHHC--CCC-EEEEEEC
T ss_conf ------69738999919797--52--489999999985--868999988988777799999999875--989-6999979
Q ss_pred CCCC-CCCCHHH-HHHHHHC
Q ss_conf 1576-6330367-7788847
Q gi|254780711|r 250 MDGD-GRGGAAL-SMRTVTG 267 (461)
Q Consensus 250 lD~~-akgG~al-s~~~~~~ 267 (461)
+|-. |..-..+ ++....+
T Consensus 138 ~Dr~~ad~~~~l~~i~~~l~ 157 (693)
T PRK00007 138 MDRTGADFLRVVEQIKDRLG 157 (693)
T ss_pred CCCCCCCHHHHHHHHHHHHC
T ss_conf 77899998999999999859
No 288
>KOG2749 consensus
Probab=96.39 E-value=0.079 Score=34.17 Aligned_cols=183 Identities=14% Similarity=0.168 Sum_probs=100.4
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC-----HHHHHH-------HHHHHCCCCCCC---
Q ss_conf 25884189962344333468899999999861489507820542210-----047799-------998510347422---
Q gi|254780711|r 96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP-----AAQEQL-------RYLGEQIQVDTL--- 160 (461)
Q Consensus 96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~-----aA~eQL-------~~~a~~~~v~~~--- 160 (461)
+..+| .+|+||+.-+||||-|-=|.+|..++ |++++.|..|.-.+ |++--. -+++-.+..|..
T Consensus 100 ~~~GP-rv~vVGp~d~GKsTl~r~L~nyavk~-gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~l~~pLV~~F 177 (415)
T KOG2749 100 SSYGP-RVMVVGPTDVGKSTLCRILLNYAVKQ-GRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNF 177 (415)
T ss_pred HCCCC-EEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCCEECCCCHHHEECCCCCCHHHCCCCCCCEEEEC
T ss_conf 02597-79998987656678999999999871-78653897479997244254222021023243431765688526632
Q ss_pred CCCCCCHHHHHHHHH----HHHH--------HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH
Q ss_conf 233210368999999----9999--------7415886998334422211246899999985138511000310111225
Q gi|254780711|r 161 EVIPEQSPEKIAIRA----TQSA--------RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD 228 (461)
Q Consensus 161 ~~~~~~dp~~i~~~a----~~~a--------~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~ 228 (461)
+.....+-.++ +++ +..+ +.-...=.||||.|-.. .+. .++|-.+.+..+-+ +++|++ |+
T Consensus 178 G~~sp~~N~~L-Y~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i~-~eg-y~~llhai~~f~v~-vviVLg----~E 249 (415)
T KOG2749 178 GLTSPSTNLEL-YKALVSELAEVLKQRLSLNPEARVSGCIINTCGWIE-GEG-YAALLHAIKAFEVD-VVIVLG----QE 249 (415)
T ss_pred CCCCCCCCHHH-HHHHHHHHHHHHHHHHCCCCHHCCCCEEEECCCEEC-CCC-HHHHHHHHHHCCCC-EEEEEC----CH
T ss_conf 68998768899-999999999999987425811100554871263141-555-89999999970764-899966----47
Q ss_pred H-H-HHHHHHHHHCCCCCEEEEECCC-CCCCCHHHHHHHHHCCCHHHEE----------CCCCCCCCCCCCHH
Q ss_conf 6-8-8889887635844077641157-6633036777888478730261----------58672321001368
Q gi|254780711|r 229 A-V-HLARNFDKIVDLTGIILTRMDG-DGRGGAALSMRTVTGKPIKAIG----------TGEKINDLENFFPD 288 (461)
Q Consensus 229 a-~-~~a~~F~~~~~i~giIlTKlD~-~akgG~als~~~~~~~PI~fig----------~GE~~~dle~F~p~ 288 (461)
- . +.-+.+...-++.-+-+.|.+| -+|-+-.-.-.....+-=+|.| .+=+++|+.++.+-
T Consensus 250 rLy~~lkk~~~~~~~v~vv~lpKsgGv~~Rs~~~r~~~r~~~I~eYFYG~~~~~lsP~t~~Vkf~Dl~v~rig 322 (415)
T KOG2749 250 RLYSSLKKDLPPKKNVRVVKLPKSGGVVARSKEVRRKLRGRSIREYFYGSVRNELSPFTFNVKFSDLTVYRIG 322 (415)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEEEEC
T ss_conf 8889987652655552489842778858504889998863118875136557764633675111157999806
No 289
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=96.39 E-value=0.0059 Score=42.77 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=31.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-EECCCCC
Q ss_conf 89962344333468899999999861489507-8205422
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-MASLDVH 140 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~-lv~~Dt~ 140 (461)
++|+||..++||||.+-.|++|+.++ |++|. ++-+|.-
T Consensus 2 ~v~i~G~~~sGKttl~~~L~~~~~~~-g~~~~~~~~~d~g 40 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIRKLLNYLKRR-GYRVAVVKHLDHG 40 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCC
T ss_conf 79999489998999999999999987-9944899989999
No 290
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.39 E-value=0.013 Score=40.22 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=51.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH------HHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 996234433346889999999986148950782054221004779------99985103474222332103689999999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ------LRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ------L~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
|+++|+.||||||-+.+||.+| +. +-+.+.|..|..+-.+ ++.+-.+ |-. .+......++.+.+
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~----~~-~~is~gdlLR~~~~~~t~~g~~i~~~~~~-G~l----vp~~i~~~l~~~~l 71 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY----GL-PHISTGDLLREEIASGTELGKKAKEYIDS-GKL----VPDEIVIKLLKERL 71 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHH----CC-EEECHHHHHHHHHHCCCHHHHHHHHHHHC-CCC----CCHHHHHHHHHHHH
T ss_conf 8998999998799999999997----98-46768899999997499589999999987-997----78999999999998
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 99974158869983344222112468999
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHINDSLMQEI 205 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El 205 (461)
.... ...-+|+|---|......+++++
T Consensus 72 ~~~~--~~~g~ilDGfPR~~~Qa~~l~~~ 98 (194)
T cd01428 72 KKPD--CKKGFILDGFPRTVDQAEALDEL 98 (194)
T ss_pred HCCC--CCCCEEEECCCCCHHHHHHHHHH
T ss_conf 4765--43877874797989999999999
No 291
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=96.37 E-value=0.034 Score=36.99 Aligned_cols=203 Identities=22% Similarity=0.312 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 99999999999987187742100025884189962344333468899999999861489507820542210047799998
Q gi|254780711|r 72 QMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYL 151 (461)
Q Consensus 72 ~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~ 151 (461)
++|++++.+.|.. .+-++.+||.|+.|+||||++==||+-+ + +. -.
T Consensus 20 ~~iv~tL~NAi~~------------~ri~HAYLF~GpRGtGKTS~ARIfAKaL-N-----C~-~~--------------- 65 (363)
T TIGR02397 20 EHIVKTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKAL-N-----CQ-GP--------------- 65 (363)
T ss_pred HHHHHHHHHHHHH------------CCCCCEEEECCCCCCCHHHHHHHHHHHH-C-----CC-CC---------------
T ss_conf 7999999999971------------8966234502859976355899999986-5-----88-78---------------
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC------------------
Q ss_conf 51034742223321036899999999997415886998334422211246899999985138------------------
Q gi|254780711|r 152 GEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN------------------ 213 (461)
Q Consensus 152 a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~------------------ 213 (461)
-+-|+ ..... ..+--..+..|||=||=|.+..+| |+++|.+.++
T Consensus 66 ---~~~PC---n~C~~-------C~~i~~g~~~DviEiDAASN~gVD-----~IR~l~e~v~y~P~~~kYKvYIIDEVHM 127 (363)
T TIGR02397 66 ---DGEPC---NECES-------CKEINSGSSLDVIEIDAASNNGVD-----DIRELRENVKYAPSKGKYKVYIIDEVHM 127 (363)
T ss_pred ---CCCCC---CCCCH-------HHHHHCCCCCCEEEECCCCCCCHH-----HHHHHHHHHCCCCCCCCCCEEEEECCCC
T ss_conf ---77877---77502-------277652898666886486568788-----9999987303687554433588732302
Q ss_pred ----------------CCCCCCCCCHHCCH-----HHHHHHHHHH-------------------HHCCCC----CEEEEE
Q ss_conf ----------------51100031011122-----5688889887-------------------635844----077641
Q gi|254780711|r 214 ----------------PHEILLVADALTGQ-----DAVHLARNFD-------------------KIVDLT----GIILTR 249 (461)
Q Consensus 214 ----------------p~e~~lV~da~~Gq-----~a~~~a~~F~-------------------~~~~i~----giIlTK 249 (461)
|.+|.|++ |||=- -.+.-.+.|+ +.+.++ -+|.-+
T Consensus 128 LS~~AFNALLKTLEEPP~hV~FIl-ATTE~~KiP~TIlSRCQrF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~ 206 (363)
T TIGR02397 128 LSKSAFNALLKTLEEPPEHVVFIL-ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 206 (363)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEE-ECCCHHHCCCCCEEECEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 865689998765227987628887-3487112055402100031267899899999999999870883177899999996
Q ss_pred CCCCCCCCHHHHHHHHHCCCHHHEECCC--CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH-HHH--HHHHHHHHH
Q ss_conf 1576633036777888478730261586--72321001368899877358627889998742112-678--998886531
Q gi|254780711|r 250 MDGDGRGGAALSMRTVTGKPIKAIGTGE--KINDLENFFPDRIANRILGMGDVVSLVEKAARNLN-EKQ--AALTAKKIA 324 (461)
Q Consensus 250 lD~~akgG~als~~~~~~~PI~fig~GE--~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d-~~~--~~~l~~k~~ 324 (461)
=||+-| =|||+-.. +.-.|.|+ +++ ..-|..+||+=|-..|++-+...++ .+. +-+..+++.
T Consensus 207 a~GS~R--DAlsllDQ----~~~~~~~~DG~i~-------~~~v~~~lGl~~~~~l~~l~~~~~~~~d~~~~l~~~~~~~ 273 (363)
T TIGR02397 207 ADGSMR--DALSLLDQ----AISFGNGSDGKIT-------YEDVNEMLGLVDEEKLIELLEAILNKRDTEEALKILDEIL 273 (363)
T ss_pred CCCCCC--HHHHHHHH----HHHHCCCCCCCCC-------HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 289610--68899999----9982688788657-------8999998357778999999999753876889999999998
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 0463799999999998
Q gi|254780711|r 325 KGKFDLEDLAEQFRQT 340 (461)
Q Consensus 325 ~g~F~l~Df~~Ql~~i 340 (461)
..-.+++-|+.++-.+
T Consensus 274 ~~G~~~~~f~~~l~~~ 289 (363)
T TIGR02397 274 ESGVDPEKFLEDLIEF 289 (363)
T ss_pred HCCCCHHHHHHHHHHH
T ss_conf 7288898999999999
No 292
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.027 Score=37.79 Aligned_cols=104 Identities=24% Similarity=0.306 Sum_probs=59.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC--------------------CCEEEECCCCCCCH--HHHHHHHHHHCC
Q ss_conf 88418996234433346889999999986148--------------------95078205422100--477999985103
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK--------------------KKILMASLDVHRPA--AQEQLRYLGEQI 155 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~--------------------~kV~lv~~Dt~R~a--A~eQL~~~a~~~ 155 (461)
..|+-+||.|+.|+||||++-=||..+-.... ..+..+.+...|.. -++|.+.+++..
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~ 101 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFL 101 (325)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC
T ss_conf 88761003799999789999999999658664334552002244432025688659977321333300699999999860
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 474222332103689999999999741588699833442221124689999998513851100031011
Q gi|254780711|r 156 QVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL 224 (461)
Q Consensus 156 ~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~ 224 (461)
..... ..++-+||||-|-.++.|. -..+.+..+.- |..+.+++-+.
T Consensus 102 ~~~~~--------------------~~~~kviiidead~mt~~A--~nallk~lEep-~~~~~~il~~n 147 (325)
T COG0470 102 SESPL--------------------EGGYKVVIIDEADKLTEDA--ANALLKTLEEP-PKNTRFILITN 147 (325)
T ss_pred CCCCC--------------------CCCCEEEEEECCCCCCHHH--HHHHHHHCCCC-CCCEEEEEEEC
T ss_conf 44656--------------------6772699973203269888--87675433248-88716999749
No 293
>PRK12377 putative replication protein; Provisional
Probab=96.37 E-value=0.058 Score=35.20 Aligned_cols=81 Identities=23% Similarity=0.296 Sum_probs=52.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
++.-++|+|+.|+|||.-+.-||..+.. .|++|+++++ +.-+++|+.-- . .+..-..+ +..
T Consensus 100 ~~~NlIf~G~pGtGKTHLA~AIg~~a~~-~G~sVlF~t~----~dLv~~L~~a~-~---------~g~~~~k~----l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTV----PDVMSRLHESY-D---------NGQSGEKF----LQE 160 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEH----HHHHHHHHHHH-H---------CCCCHHHH----HHH
T ss_conf 8860899899998788999999999998-7996999889----99999999999-8---------48509999----999
Q ss_pred HHHCCCCEEEEECCCCCCCHHH
Q ss_conf 9741588699833442221124
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDS 200 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~ 200 (461)
-..+|++|||--|-.+.++.
T Consensus 161 --l~~~dLLIIDElG~~~~s~~ 180 (248)
T PRK12377 161 --LCKVDLLVLDEIGIQRETKN 180 (248)
T ss_pred --HHCCCEEEEHHCCCCCCCHH
T ss_conf --73389898600057889867
No 294
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.37 E-value=0.025 Score=37.98 Aligned_cols=214 Identities=17% Similarity=0.189 Sum_probs=93.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC-------------
Q ss_conf 8841899623443334688999999998614895078205422100477999985103474222332-------------
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIP------------- 164 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~------------- 164 (461)
.+-.++.++|+|||||||.+-=++-.++-..| +|.+-.-|..+... +.+.+.+++= |..+.
T Consensus 28 ~~Ge~~aliG~NGaGKSTLl~~i~Gll~p~~G-~I~i~G~~i~~~~~----~~~r~~ig~v-fQ~p~~~l~~~tv~~~i~ 101 (277)
T PRK13652 28 GRKQRIAVIGPNGAGKSTLFKHFNGILKPTSG-SVLIRGEPITKENI----REVRKFVGLV-FQNPDDQIFSPTVEQDIA 101 (277)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCH----HHHHHCCEEE-EECCCHHHCCCHHHHHHH
T ss_conf 89989999999994799999999669999846-99999999998999----9997132899-877622213255999999
Q ss_pred ------CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHH----
Q ss_conf ------10368999999999974158869983344222112-46899999985138511000310-1112256888----
Q gi|254780711|r 165 ------EQSPEKIAIRATQSARDGGYDAVILDTAGRNHIND-SLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHL---- 232 (461)
Q Consensus 165 ------~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~-~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~---- 232 (461)
+.+...+..+ ++.+-+ ..+ |-+-+.|...+= .=+.+.-.|..+.-.+--+|++| .+.|.|....
T Consensus 102 ~~~~~~g~~~~~~~~~-v~~~l~-~~g--L~~~~~~~~~~LSGGqkqRvaiA~aL~~~P~lLlLDEPtagLDp~~~~~i~ 177 (277)
T PRK13652 102 FGPINLGLDEETVAHR-VDEALH-MLG--LEELRDRVPHHLSGGEKKRVAIAGILAMEPQVLVLDEPTAGLDPQGVKELF 177 (277)
T ss_pred HHHHHCCCCHHHHHHH-HHHHHH-HCC--CHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 8898869899999999-999998-679--978871895448999999999999998299999983974548999999999
Q ss_pred --HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCC-CHHHHHHHHHCCCCHHHHHHH
Q ss_conf --89887635844077641157663303677788847873026158672321---001-368899877358627889998
Q gi|254780711|r 233 --ARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENF-FPDRIANRILGMGDVVSLVEK 306 (461)
Q Consensus 233 --a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F-~p~~~~~riLGmgD~~~l~e~ 306 (461)
.+..++..+.|=+++|- | +..+...---|..+-.|+-+.+= |.| +|+.+...=|...-+..|...
T Consensus 178 ~~l~~l~~~~g~Tii~vtH-d--------l~~v~~~aDri~vl~~G~ii~~Gtp~ev~~~p~~l~~~~l~~p~~~~l~~~ 248 (277)
T PRK13652 178 DFLNALPETYGMTVIFSTH-Q--------VELVAEMADYIYVMEKGEIVGYGTVQEIFLQPDLLARARLDLPSLPKLIQS 248 (277)
T ss_pred HHHHHHHHHCCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHHCHHHHHHCCCCCCHHHHHHHH
T ss_conf 9999999850989999914-8--------999999799999998999999878999974989999779999839999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 7421126789988865310463799999999998
Q gi|254780711|r 307 AARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQT 340 (461)
Q Consensus 307 ~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i 340 (461)
..+. -=.+ ...+|.+|..+++-.+
T Consensus 249 L~~~---------g~~i-~~~~~~~~~~d~~~~~ 272 (277)
T PRK13652 249 LRAQ---------GIAI-DMAYTYQDAEDAFLKA 272 (277)
T ss_pred HHHC---------CCCC-CCCCCHHHHHHHHHHH
T ss_conf 9975---------9999-9666778999999998
No 295
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=96.36 E-value=0.056 Score=35.33 Aligned_cols=164 Identities=20% Similarity=0.304 Sum_probs=107.6
Q ss_pred EEEECCC-CCCHHHHHHHHHHHHHHHCCCCEE-----------EECCCCCCCHHHHHHHHHHHCCC--------------
Q ss_conf 9962344-333468899999999861489507-----------82054221004779999851034--------------
Q gi|254780711|r 103 IMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKIL-----------MASLDVHRPAAQEQLRYLGEQIQ-------------- 156 (461)
Q Consensus 103 IllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~-----------lv~~Dt~R~aA~eQL~~~a~~~~-------------- 156 (461)
||++|-+ -||||+-+|=||+-|.+ +|.+|+ .||.|--=.|-..-+|.||..+.
T Consensus 1 iMV~GTsS~AGKs~l~AaLCRiL~r-rGy~VAPFKsQNMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNPvLLKPkg 79 (502)
T TIGR00313 1 IMVVGTSSSAGKSLLTAALCRILAR-RGYRVAPFKSQNMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNPVLLKPKG 79 (502)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 9542011540289999999999852-788127850110101333113787551376899986387886234871016788
Q ss_pred ---------------CCC--CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH-HH--HHHHHHCCCCC
Q ss_conf ---------------742--22332103689999999999741588699833442221124689-99--99985138511
Q gi|254780711|r 157 ---------------VDT--LEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQ-EI--SEIKSLTNPHE 216 (461)
Q Consensus 157 ---------------v~~--~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~-El--~~i~~~~~p~e 216 (461)
+.+ |....-.-....+++++++. ++.||+|+|-=|| +.-+-||.+ -| -+|.+.++|+
T Consensus 80 df~SQviv~G~a~g~~~~~~Y~~~~~d~~~~~i~eSle~L-~~~Yd~vv~EGAG-S~AEINL~~rDLaN~~iA~~~~A~- 156 (502)
T TIGR00313 80 DFTSQVIVHGRAVGDMNAQEYYKNKVDFLLKAIKESLEIL-AEEYDLVVIEGAG-SPAEINLKERDLANMRIAELADAD- 156 (502)
T ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCC-CCCCCCCCCCCCHHHHHHHHCCCC-
T ss_conf 8466789841124667615677799999999999999875-2028889982688-710005331572247898643976-
Q ss_pred CCCCCCHHCCHHHHHHHHHHHHHC------CCCCEEEEECCCCCCC--CHHHHHHHHHCCCHH
Q ss_conf 000310111225688889887635------8440776411576633--036777888478730
Q gi|254780711|r 217 ILLVADALTGQDAVHLARNFDKIV------DLTGIILTRMDGDGRG--GAALSMRTVTGKPIK 271 (461)
Q Consensus 217 ~~lV~da~~Gq~a~~~a~~F~~~~------~i~giIlTKlD~~akg--G~als~~~~~~~PI~ 271 (461)
++||.|=-=|--=..++=+.. -+ -|=|+|+-|+-|..-- -++=.+=..||+|+.
T Consensus 157 ~iLvADIDRGGVFAsi~GTl~-LL~~~~r~liKG~vINkfRG~~~vL~~GI~~lEelTGiPVL 218 (502)
T TIGR00313 157 VILVADIDRGGVFASIYGTLK-LLPEEERKLIKGIVINKFRGNVDVLESGIEKLEELTGIPVL 218 (502)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCCCCCEECEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 799975077743243374666-18834575003068835468724434456899885484234
No 296
>pfam00350 Dynamin_N Dynamin family.
Probab=96.35 E-value=0.014 Score=39.80 Aligned_cols=66 Identities=26% Similarity=0.176 Sum_probs=37.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---HHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 58869983344222112468999999851385110003101112---256888898876358440776411
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---QDAVHLARNFDKIVDLTGIILTRM 250 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q~a~~~a~~F~~~~~i~giIlTKl 250 (461)
..+++||||.|=......--+-...+.. ..|-+++|+||... |++...++.....-.-+=+|+||.
T Consensus 100 ~~~l~lvDtPGl~s~~~~~~~~t~~~i~--~~d~il~V~~a~~~~~~~~~~~l~~~~d~~~~r~i~V~tk~ 168 (168)
T pfam00350 100 VPGLTLVDTPGLDSVAVGDQDLTEEYIK--PADIILAVVDANHDLSTSEALFLAREVDPNGKRTIGVLTKD 168 (168)
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHH--HCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 8881898279865444336999999985--38669999846951666199999997399998389998188
No 297
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=96.33 E-value=0.041 Score=36.34 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=23.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 99623443334688999999998614895078205
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASL 137 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~ 137 (461)
||+.|+.|+|||+.+--+|+.+. ..+..+.+
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~----~~~~~v~~ 31 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG----APFIEISG 31 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHC----CCCEECCC
T ss_conf 98789999999999999999978----98533242
No 298
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.33 E-value=0.0081 Score=41.71 Aligned_cols=122 Identities=22% Similarity=0.233 Sum_probs=62.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
.|+++|++|||||||..-+-.++.. .+++|.-+. |- +|..-.+..++.|. ...+.+.. .++..+..
T Consensus 82 lilitGptGSGKtTtl~a~l~~~~~-~~~~i~tiE-dP-----vE~~~~~~~Q~~v~---~~~g~~~~----~~lr~~LR 147 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNT-PEKNIITVE-DP-----VEYQIPGINQVQVN---EKAGLTFA----RGLRAILR 147 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEE-CC-----CCCCCCCCCEEEEC---CCCCCCHH----HHHHHHHC
T ss_conf 8999789999779999999986436-885089986-76-----31456887357616---66687899----99999855
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 158869983344222112468999999851385110003101112256888898876358440776
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIIL 247 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIl 247 (461)
..-|+|+|+-.- |.+-.... +..+..-| ||+...--.++......+.+ ++++-..+
T Consensus 148 ~dPDvi~igEiR----D~eta~~a--~~aa~tGh---lV~tTlHa~~a~~~i~RL~~-lgv~~~~l 203 (264)
T cd01129 148 QDPDIIMVGEIR----DAETAEIA--VQAALTGH---LVLSTLHTNDAPGAITRLLD-MGIESYLL 203 (264)
T ss_pred CCCCEEEECCCC----CHHHHHHH--HHHHHHCC---EEEEEECCCCHHHHHHHHHH-CCCCHHHH
T ss_conf 699988746889----99999999--99997099---69999703999999999998-29998999
No 299
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.33 E-value=0.048 Score=35.81 Aligned_cols=228 Identities=19% Similarity=0.239 Sum_probs=104.1
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC------
Q ss_conf 00025884189962344333468899999999861489507820542210047799998510347422233210------
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ------ 166 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~------ 166 (461)
+...++ .++.++|+|||||||.+-=|+..++-..| .|.+-..+..-.-.-..++.+..++++=| ..+..+
T Consensus 15 l~i~~G--e~vaiiG~sGsGKSTLl~~l~GLl~P~~G-~i~~~g~~i~~~~~~~~~~~lr~~vG~Vf-Q~P~~ql~~~tV 90 (276)
T PRK13634 15 VSIPSG--SYVAIIGHTGSGKSTLLQHLNGLLKPTKG-TVTIGERVITAGKKNKKLKPLRKKVGIVF-QFPEHQLFEETV 90 (276)
T ss_pred EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCCHHHHHHHHHCEEEEE-ECCCHHCCHHHH
T ss_conf 799899--89999999996999999999749998874-99999998868886666899873268999-876200155159
Q ss_pred -------------HHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHHHH
Q ss_conf -------------3689999999999741588699833442221--12468999999851385110003101-1122568
Q gi|254780711|r 167 -------------SPEKIAIRATQSARDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVADA-LTGQDAV 230 (461)
Q Consensus 167 -------------dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~a~ 230 (461)
.+.++..++.+..+.-+.+- +-.-|.+. ... ..+--.|..+.--+-.+|++|= ++|.|..
T Consensus 91 ~e~iafg~~~~g~~~~e~~~rv~~~L~~vgL~~---~~~~r~p~~LSGG-qkQRVaIA~aLa~~P~iLllDEPTs~LD~~ 166 (276)
T PRK13634 91 EKDICFGPMNFGVSEEEAKQKAKEMIELVGLPE---ELLARSPFELSGG-QMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 166 (276)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH---HHHHCCHHHCCHH-HHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 999999999869999999999999999769987---7861890018999-999999999997299989976985427999
Q ss_pred HHHH------HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCC-CHHHHHHHHHCCCCH
Q ss_conf 8889------887635844077641157663303677788847873026158672321---001-368899877358627
Q gi|254780711|r 231 HLAR------NFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENF-FPDRIANRILGMGDV 300 (461)
Q Consensus 231 ~~a~------~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F-~p~~~~~riLGmgD~ 300 (461)
.+.+ ..++..+.|=+++|- | +..+...---|.++--|+-+.+= |+| +|+.+-..=|....+
T Consensus 167 ~~~~i~~ll~~L~~e~g~Tii~vTH-d--------l~~~~~~aDrvivm~~G~Iv~~G~p~evf~~p~~l~~~~l~~P~~ 237 (276)
T PRK13634 167 GRKEIMEMFYKLHKEKGLTTVLVTH-S--------MEDAARYADQIVVMHKGTVFLQGTPREIFSHPDELEAIGLDLPET 237 (276)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHH
T ss_conf 9999999999999961999999867-9--------999999799999998999999878999972999999779999969
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 889998742112678998886531046379999999999851148
Q gi|254780711|r 301 VSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGG 345 (461)
Q Consensus 301 ~~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~kmG~ 345 (461)
..|....++.. --.+..-.+|.+++.+++.+.-+=|+
T Consensus 238 ~~l~~~L~~~~--------g~~~~~~~~t~ee~~~~i~~~~~~~g 274 (276)
T PRK13634 238 VKFKRALEEKF--------GISFPKPTLTLEELAHEVVQVLRKGG 274 (276)
T ss_pred HHHHHHHHHHH--------CCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999998965--------99999888899999999999997538
No 300
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.32 E-value=0.025 Score=38.03 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=37.3
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 0002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ 156 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~ 156 (461)
+...++ -++.++|++||||||.+-=++..+.-..| +|.+-..|.......+..+..+..++
T Consensus 31 l~i~~G--E~v~ivG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~G~~~~~~~~~~~~~~r~~~ig 91 (228)
T PRK10584 31 LVVKRG--ETIALIGESGSGKSTLLAILAGLDDGSSG-EVSLVGQPLHNMDEEARAKLRAKHVG 91 (228)
T ss_pred EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHHCCCEE
T ss_conf 899999--89999999985899999999669999967-99999999997998899876306477
No 301
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.32 E-value=0.013 Score=40.04 Aligned_cols=153 Identities=20% Similarity=0.313 Sum_probs=90.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
+.|+-++|..+|||||.+-||...++. +|.+|++|--+... ..+ ...++|.-. +
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~-~G~rVa~iKH~hh~-------------~~~----D~~GkDs~r--------~ 55 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKA-RGYRVATVKHAHHD-------------FDL----DKPGKDTYR--------H 55 (161)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCC-------------CCC----CCCCCCCCH--------H
T ss_conf 728999962799734289999999975-79379999865877-------------777----889876610--------0
Q ss_pred HHCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHCCCC-CCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCC---
Q ss_conf 74158869983344222112468-9999998513851-100031011122568888988763584407764115766---
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLM-QEISEIKSLTNPH-EILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDG--- 254 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm-~El~~i~~~~~p~-e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~a--- 254 (461)
...+.+.+++=+..|...-.... .+|..+.....|. ..+|| +-|+ ..++-.|++-+-+...
T Consensus 56 ~~aGa~~~v~~s~~~~~~~~~~~~~~L~~vl~~l~~~~D~vLV-------------EGFK-~~~~pKI~~~r~~~~~~~~ 121 (161)
T COG1763 56 RKAGADQVVVASDHRTALMTRTPDRDLDAVLSRLDPLLDLVLV-------------EGFK-EEPLPKIVLGRDEEGDREP 121 (161)
T ss_pred HCCCCCEEEEECCCEEEEEEECCCCCHHHHHHHCCCCCCEEEE-------------ECCC-CCCCCEEEEECCCCCCCCC
T ss_conf 0356634999559789999826876899999742755679999-------------5256-6777789995666554455
Q ss_pred CCCHHHHH-HHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 33036777-888478730261586723210013688998773
Q gi|254780711|r 255 RGGAALSM-RTVTGKPIKAIGTGEKINDLENFFPDRIANRIL 295 (461)
Q Consensus 255 kgG~als~-~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL 295 (461)
....+.++ ......|+.++..=. ..++. ++++.+..++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~--~~~~~~~~~~ 160 (161)
T COG1763 122 VDVIDPAVIAVAKDAPLAEVTDLP-VLDLN--DVEALADFVL 160 (161)
T ss_pred CCCCCCHHHHHCCCCCCCCCCCCC-HHHCC--CHHHHHHHHC
T ss_conf 432221121001430000003684-23210--0588887540
No 302
>PRK06921 hypothetical protein; Provisional
Probab=96.31 E-value=0.1 Score=33.33 Aligned_cols=124 Identities=20% Similarity=0.299 Sum_probs=75.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
-+-++|.|..|+|||--+.-+|+.+.++.+.+|+.... +..++.|+.. |.. . ..-++..
T Consensus 116 ~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~----~~~~~~lk~~--------~~~-~--------~~~l~~~ 174 (265)
T PRK06921 116 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF----VEGFGDLKDD--------FDL-L--------EAKLNRM 174 (265)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEH----HHHHHHHHHH--------HHH-H--------HHHHHHH
T ss_conf 66279972898988999999999999962971999887----9999999988--------888-9--------9999986
Q ss_pred HHCCCCEEEEECC-----CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 7415886998334-----42221124689999998513851100031011122568888988763584407764115766
Q gi|254780711|r 180 RDGGYDAVILDTA-----GRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDG 254 (461)
Q Consensus 180 ~~~~~D~iiiDTa-----GR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~a 254 (461)
..+|++|||-- |.....++-++++ |
T Consensus 175 --~~~dlLIIDDLfk~~~G~e~~te~~~~~l------------------------------f------------------ 204 (265)
T PRK06921 175 --KKVEVLFIDDLFKPVNGKPRATEWQIEQT------------------------------Y------------------ 204 (265)
T ss_pred --HCCCEEEEECCCCCCCCCCCCCHHHHHHH------------------------------H------------------
T ss_conf --32999998221223479878988999999------------------------------9------------------
Q ss_pred CCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 330367778884787302615867232100136889987735862
Q gi|254780711|r 255 RGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGD 299 (461)
Q Consensus 255 kgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD 299 (461)
.+|.-++.-++|+ -|+|-..+++|..+ .+|++|||+.|--
T Consensus 205 ---~iIN~Ry~~~kpt-IiSSNl~~~~L~~i-~e~i~SRi~emc~ 244 (265)
T PRK06921 205 ---SVVNYRYLNHKPI-LISSELTIDELLDI-DEALGSRIVEMCK 244 (265)
T ss_pred ---HHHHHHHHCCCCE-EEECCCCHHHHHHH-HHHHHHHHHHHCC
T ss_conf ---9999999769998-99868998999876-3798888999725
No 303
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.29 E-value=0.012 Score=40.43 Aligned_cols=94 Identities=17% Similarity=0.299 Sum_probs=49.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ 177 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~ 177 (461)
.+...|+++|+.||||||-+-+|. . +.... + .-..++.+..
T Consensus 12 ~~~~Ki~ilG~~~sGKTsll~~l~----~-~~~~~------~------------~pT~g~~~~~---------------- 52 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLA----S-EDISH------I------------TPTQGFNIKT---------------- 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH----C-CCCCC------C------------CCCCCEEEEE----------------
T ss_conf 877589999799998899999985----6-99866------0------------6811323799----------------
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCHHCCHHHHHHH-HHHHHH
Q ss_conf 9974158869983344222112468999-9998513851100031011122568888-988763
Q gi|254780711|r 178 SARDGGYDAVILDTAGRNHINDSLMQEI-SEIKSLTNPHEILLVADALTGQDAVHLA-RNFDKI 239 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~~~p~e~~lV~da~~Gq~a~~~a-~~F~~~ 239 (461)
...+++.+.+-||+|.... .++ +.+.+ +.+-+++|+|++- .+.++.+ ..+++.
T Consensus 53 -v~~~~~~~~lwD~~G~~~~-----~~~~~~y~~--~a~~iI~VvD~td-~~~~~~~~~~l~~~ 107 (173)
T cd04155 53 -VQSDGFKLNVWDIGGQRAI-----RPYWRNYFE--NTDCLIYVIDSAD-KKRLEEAGAELVEL 107 (173)
T ss_pred -EEECCEEEEEEECCCCHHH-----HHHHHHHCC--CCCEEEEEEECCC-HHHHHHHHHHHHHH
T ss_conf -9989999999855875101-----268997655--5637999996675-68899999999999
No 304
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.036 Score=36.79 Aligned_cols=216 Identities=20% Similarity=0.229 Sum_probs=97.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC--------------
Q ss_conf 841899623443334688999999998614895078205422100477999985103474222332--------------
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIP-------------- 164 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~-------------- 164 (461)
+--++.++|+|||||||.+-=|+..++-..| +|.+-..|..... ..+..+.+++|+= |..+.
T Consensus 32 ~GE~v~iiG~nGsGKSTLl~~l~GLl~p~~G-~V~i~G~~i~~~~--~~~~~~r~~iG~V-fQ~P~~~l~~~tV~e~i~f 107 (287)
T PRK13637 32 DGEFVALIGHTGSGKSTLIQHLNGLLKPTSG-KIIIDGVDITDKK--VKLSDIRKKVGLV-FQYPEYQLFEETIEKDIAF 107 (287)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCC--CCHHHHHHCEEEE-EECCCCCCCCCCHHHHHHH
T ss_conf 9989999999993999999999739988872-6999999987888--6778887417899-6175202370309999986
Q ss_pred -----CCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHH----
Q ss_conf -----1036899999999997-415886998334422211-246899999985138511000310-1112256888----
Q gi|254780711|r 165 -----EQSPEKIAIRATQSAR-DGGYDAVILDTAGRNHIN-DSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHL---- 232 (461)
Q Consensus 165 -----~~dp~~i~~~a~~~a~-~~~~D~iiiDTaGR~~~d-~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~---- 232 (461)
+-+..++..+ ++.+- .-+.|. -+-+.|.+.+ ..=+.+--.|..+.--+--+|++| .++|.|....
T Consensus 108 g~~~~g~~~~e~~~r-v~~~l~~vgL~~--~~~~~~~p~~LSGGqkQRvaiA~aL~~~P~iLllDEPTs~LDp~~~~~i~ 184 (287)
T PRK13637 108 GPINLGLSEEEIENR-VKEAMNIVGLDY--EVYKDKSPFELSGGQKRRVAIAGVVAMEPKVLILDEPTAGLDPKGRDDIL 184 (287)
T ss_pred HHHHCCCCHHHHHHH-HHHHHHHCCCCH--HHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 898869999999999-999997669984--88706891129988999999999998399999983886648999999999
Q ss_pred --HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCC-CHHHHHHHHHCCCCHHHHHHH
Q ss_conf --89887635844077641157663303677788847873026158672321---001-368899877358627889998
Q gi|254780711|r 233 --ARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENF-FPDRIANRILGMGDVVSLVEK 306 (461)
Q Consensus 233 --a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F-~p~~~~~riLGmgD~~~l~e~ 306 (461)
.+..++..++|=+++|- | +..+...---|..+--|+-+.|= |.| +|+.+...=|+...+..|..+
T Consensus 185 ~~l~~L~~e~g~Tvi~vTH-d--------l~~v~~~aDRvivl~~G~Iv~~Gtp~evf~~~~~l~~~~l~~P~~~~l~~~ 255 (287)
T PRK13637 185 EKIKALHKEYNMTIILVSH-S--------MEDVAKIADRIIVMNKGRCELQGTPREVFKEVDTLESIGLAVPQVTYLVRK 255 (287)
T ss_pred HHHHHHHHHCCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHH
T ss_conf 9999999850989999957-9--------999999699999998999999878899876988998769999919999999
Q ss_pred HHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 7421-126789988865310463799999999998
Q gi|254780711|r 307 AARN-LNEKQAALTAKKIAKGKFDLEDLAEQFRQT 340 (461)
Q Consensus 307 ~~~~-~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i 340 (461)
..+. ++ +...-+|+++..+++-..
T Consensus 256 L~~~g~~----------~~~~~~t~~e~~~~l~~~ 280 (287)
T PRK13637 256 LRKKGFN----------IPDDIFTIEEAKEELLKY 280 (287)
T ss_pred HHHCCCC----------CCCCCCCHHHHHHHHHHH
T ss_conf 9975999----------998866899999999999
No 305
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.29 E-value=0.14 Score=32.38 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=67.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCC
Q ss_conf 3111269989999999999999871877421000258841899623443334688999999998614-895078205422
Q gi|254780711|r 62 EKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVH 140 (461)
Q Consensus 62 ~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~ 140 (461)
.-+|..+--++.=++.+...|...+. ...|..+++.|+.|+|||+|+-.+...++... ...+.-|.|-.+
T Consensus 26 ~yvP~~l~~Re~Ei~~l~~~l~~~l~---------g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~ 96 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR---------GSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQID 96 (394)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 88899898859999999999999975---------999984799889999899999999999997468965999969668
Q ss_pred CCHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCC--HHHHHHHHHHHHH
Q ss_conf 100477999985103-474222332103689999999999741--588699833442221--1246899999985
Q gi|254780711|r 141 RPAAQEQLRYLGEQI-QVDTLEVIPEQSPEKIAIRATQSARDG--GYDAVILDTAGRNHI--NDSLMQEISEIKS 210 (461)
Q Consensus 141 R~aA~eQL~~~a~~~-~v~~~~~~~~~dp~~i~~~a~~~a~~~--~~D~iiiDTaGR~~~--d~~lm~El~~i~~ 210 (461)
+.- ..=+..++..+ +.++ ...|- |..-.++.+...... .+=+|++|-.-.+-. ..+++-.|-+...
T Consensus 97 ~t~-~~i~~~i~~~L~~~~~--p~~G~-s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~ 167 (394)
T PRK00411 97 RTR-YAILSEIARSLFGHPP--PSSGL-SFDELFDKIAEYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHE 167 (394)
T ss_pred CCH-HHHHHHHHHHHCCCCC--CCCCC-CHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCC
T ss_conf 989-9999999999569989--87787-89999999999861669758999965540203665089999985402
No 306
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.28 E-value=0.14 Score=32.33 Aligned_cols=115 Identities=25% Similarity=0.222 Sum_probs=71.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC---HHHHHHHH
Q ss_conf 4189962344333468899999999861489507820542210047799--998510347422233210---36899999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ---SPEKIAIR 174 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~---dp~~i~~~ 174 (461)
-..|.+.|-.|.|||+.+--+|.....+.|++|++.+..-- -+|| +.+|...+|+......+. +...-...
T Consensus 194 g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs----~eql~~R~la~~s~i~~~~i~~g~l~~~~~~~~~~ 269 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS----AEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLN 269 (421)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 86899985467874599999999999866983899925799----99999999998548977666528999899999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9999974158869983344222112468999999851385110003101
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
++... .+..+.|-||++..-. ++...++++.+.-.+ --+.|+|-
T Consensus 270 a~~~l--~~~~l~i~d~~~~ti~--~ir~~~r~~~~~~~~-l~livIDY 313 (421)
T TIGR03600 270 AVDRL--SEKDLYIDDTGGLTVA--QIRSIARRIKRKKGG-LDLIVVDY 313 (421)
T ss_pred HHHHH--HCCCEEEECCCCCCHH--HHHHHHHHHHHHCCC-CCEEEECH
T ss_conf 99986--1687899669988767--899999999986289-86999757
No 307
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=96.28 E-value=0.023 Score=38.27 Aligned_cols=128 Identities=27% Similarity=0.332 Sum_probs=71.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
.|++||..++||+|-.-.|.. .+. ++- ++ | .+
T Consensus 3 kVaivGrpNvGKSTLlN~L~g-------~~i--~~~---K~----q--------tt------------------------ 34 (143)
T pfam10662 3 KIMLIGRSGCGKTTLTQALNG-------EEL--KYK---KT----Q--------AI------------------------ 34 (143)
T ss_pred EEEEECCCCCCHHHHHHHHCC-------CCE--EEC---CC----E--------EE------------------------
T ss_conf 599989999999999999759-------944--517---87----0--------79------------------------
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf 158869983344222112468999999851385110003101112256--888898876358440776411576633036
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDA--VHLARNFDKIVDLTGIILTRMDGDGRGGAA 259 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a--~~~a~~F~~~~~i~giIlTKlD~~akgG~a 259 (461)
.+...+|||+|.+..+..+++.+..-.. +.|-++||+||.-.... ...++.|+. ++ =+|++|.|--.+- ..
T Consensus 35 -~~~~~~IDTPG~~~~~~~~~~~~~~~~~--daDvil~vvDa~~~~~~~~~~~~~~~~k--pv-IlViNKiD~~~~~-~~ 107 (143)
T pfam10662 35 -EFSDNMIDTPGEYLENRRFYSALIVTAA--DADVIALVQDATEPWSVFPPGFASMFNK--PV-IGIITKIDLAKDE-AN 107 (143)
T ss_pred -EECCCEEECCCCCCCCHHHHHHHHHHHH--HCCEEEEEEECCCCCCCCCHHHHHHCCC--CE-EEEEECCCCCCCH-HH
T ss_conf -8557489998766562899999999996--4999999987788667568778975479--88-9999802245756-67
Q ss_pred HHHHH----HHCC-CHHHEE--CCCCCCCCCC
Q ss_conf 77788----8478-730261--5867232100
Q gi|254780711|r 260 LSMRT----VTGK-PIKAIG--TGEKINDLEN 284 (461)
Q Consensus 260 ls~~~----~~~~-PI~fig--~GE~~~dle~ 284 (461)
+.... ..+. .|..|+ +|+.+|+|-.
T Consensus 108 l~~~~~~~~~~~~~~i~~iSA~~g~Gid~L~~ 139 (143)
T pfam10662 108 IEMVEEWLNNAGAEKIFEVSAVTNEGIDELFA 139 (143)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf 89999999758998799988989989999999
No 308
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.27 E-value=0.0069 Score=42.25 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=48.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
||-+||-.||||||-+.||-.+|+. +|.+|+.|--|.++ ..+ ..+++|.-. +++
T Consensus 4 ii~ivG~s~SGKTTLi~kli~~l~~-~G~rV~~IKH~~H~-------------f~~----D~pGkDS~r--------~r~ 57 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHD-------------MDV----DKPGKDSYE--------LRK 57 (170)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC-------------CCC----CCCCCCCHH--------HHH
T ss_conf 7999946999999999999999998-79849999457778-------------889----999841099--------997
Q ss_pred CCCCEEEEECCCCC
Q ss_conf 15886998334422
Q gi|254780711|r 182 GGYDAVILDTAGRN 195 (461)
Q Consensus 182 ~~~D~iiiDTaGR~ 195 (461)
-+.+.++|=+..|.
T Consensus 58 AGA~~v~v~s~~r~ 71 (170)
T PRK10751 58 AGAAQTLVASQQRW 71 (170)
T ss_pred HCCCEEEEECCCCE
T ss_conf 32664688754321
No 309
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.27 E-value=0.022 Score=38.47 Aligned_cols=123 Identities=16% Similarity=0.135 Sum_probs=65.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
-|.++|=-.+||||.+..|.+.+...+ ..... +..+.+++.. -+.-|+.+..... .+..
T Consensus 4 Ni~iiGHVDhGKTTL~~~l~~~~~~~~-~~~~~------~~~~~D~~~~-EreRGiTI~~~~~-------------~~~~ 62 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKG-GAKFK------KYDEIDKAPE-EKARGITINTAHV-------------EYET 62 (195)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHC-CCCCC------CCHHCCCCHH-HHCCCCCCCCEEE-------------EEEC
T ss_conf 999996058869899999999886634-44411------2001005466-6505886144189-------------9960
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHH--HHCCCCCEE--EEECCCC
Q ss_conf 15886998334422211246899999985138511000310111225688889-887--635844077--6411576
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR-NFD--KIVDLTGII--LTRMDGD 253 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~--~~~~i~giI--lTKlD~~ 253 (461)
.++.+-+|||+|-... +.++.. .+...|-.+||+||.-|... |.+ .+. ..+++.-+| ++|+|-.
T Consensus 63 ~~~~~~~IDtPGH~dF----~~~~i~--g~~~~D~aiLVVdA~eGv~~--QT~eh~~la~~lgi~~iiV~iNK~D~~ 131 (195)
T cd01884 63 ANRHYAHVDCPGHADY----IKNMIT--GAAQMDGAILVVSATDGPMP--QTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred CCEEEEECCCCCHHHH----HHHHHH--HHHHCCEEEEEEECCCCCCH--HHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 8816996268960778----889986--35113626899852778747--899999999980999627999687789
No 310
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.044 Score=36.08 Aligned_cols=215 Identities=17% Similarity=0.139 Sum_probs=103.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
-++.++|.|||||||.+-=|+..+.-..| +|.+-.-|..... +..+..++++= |..+...=+...+++-+.+..
T Consensus 31 E~vaivG~nGsGKSTL~~~l~Gll~p~~G-~I~i~G~~i~~~~----~~~lr~~ig~V-fQ~p~~~~~~~tV~e~i~fgl 104 (276)
T PRK13650 31 EWLSIIGHNGSGKSTTVRLIDGLLEAESG-SIIIDGDLLTEEN----VWEIRHKIGMV-FQNPDNQFVGATVEDDVAFGL 104 (276)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCC----HHHHHHCEEEE-EECCCHHCCCCCHHHHHHHHH
T ss_conf 89999999998799999999738898860-8999999998677----68876414699-767201056363999998799
Q ss_pred HC-CC-------------C-EEEEECCCCCCCHH-HHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHH------HHHHH
Q ss_conf 41-58-------------8-69983344222112-46899999985138511000310-1112256888------89887
Q gi|254780711|r 181 DG-GY-------------D-AVILDTAGRNHIND-SLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHL------ARNFD 237 (461)
Q Consensus 181 ~~-~~-------------D-~iiiDTaGR~~~d~-~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~------a~~F~ 237 (461)
.+ +. + +=+-|-+-|.+..= .=..+--.|.++.-.+--+|++| .+++.|.... .+..+
T Consensus 105 ~~~g~~~~e~~~rv~~~l~~~gl~~~~~r~p~~LSGGQrQRvaIA~aLa~~P~lLilDEPTs~LD~~~~~~i~~~l~~l~ 184 (276)
T PRK13650 105 ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKNIR 184 (276)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 87799999999999999987799245538903389999999999999973999999838866589999999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 63584407764115766330367778884787302615867232---1001-3688998773586278899987421126
Q gi|254780711|r 238 KIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENF-FPDRIANRILGMGDVVSLVEKAARNLNE 313 (461)
Q Consensus 238 ~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F-~p~~~~~riLGmgD~~~l~e~~~~~~d~ 313 (461)
+..++|-+++|- | -.. +. .---|.++-.|+-+.+ =|.| +|+.+...=|.-..+..+..+.++.
T Consensus 185 ~~~g~Tvi~iTH-d----l~~-v~----~aDrvivm~~G~Iv~~Gtp~evf~~p~~l~~~~l~~P~~~~~~~~L~~~--- 251 (276)
T PRK13650 185 DDYQLTVISITH-D----LDE-VA----LSDRVLVMKDGQVESTSTPRELFSRGDELLQLGLDIPFTTSLVQMLQEE--- 251 (276)
T ss_pred HHCCCEEEEEEE-C----HHH-HH----CCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHC---
T ss_conf 842989999957-7----899-96----0999999989999997689999749899997799998699999999965---
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 789988865310463799999999998
Q gi|254780711|r 314 KQAALTAKKIAKGKFDLEDLAEQFRQT 340 (461)
Q Consensus 314 ~~~~~l~~k~~~g~F~l~Df~~Ql~~i 340 (461)
--.+-.+-+|.++..+++..+
T Consensus 252 ------g~~~~~~~~t~~e~~~~l~~~ 272 (276)
T PRK13650 252 ------GYDLDYGYLTEKELEEQLWEL 272 (276)
T ss_pred ------CCCCCCCCCCHHHHHHHHHHH
T ss_conf ------999998887999999999999
No 311
>PRK05636 replicative DNA helicase; Provisional
Probab=96.23 E-value=0.14 Score=32.17 Aligned_cols=114 Identities=15% Similarity=0.215 Sum_probs=71.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCCH-HH--HHHHH
Q ss_conf 4189962344333468899999999861489507820542210047799--9985103474222332103-68--99999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQS-PE--KIAIR 174 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~d-p~--~i~~~ 174 (461)
-..|.+.|=.|.|||+.+--+|.....+++++|++.+..-- .+|| +.+|...+|+......+.- .. .-+..
T Consensus 267 G~LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLEMs----~~ql~~Rlla~~s~V~~~~ir~g~l~~~~~~~l~~ 342 (507)
T PRK05636 267 GQMIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLEMS----KSEIVMRLLSAEAEVRLADMRGGKMDEDAWEKLVQ 342 (507)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 56799973787866899999999999876993799715699----89999999998479887888558878899999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9999974158869983344222112468999999851385110003101
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
++... .+..+.|-||++. ... ++....+++++..+.+ ++|+|-
T Consensus 343 a~~~l--~~~pl~IdD~~~l-ti~-~Ira~aRrlk~~~~l~--livVDY 385 (507)
T PRK05636 343 RLGKI--AQAPIFIDDSANL-TMM-EIRSKARRLKQKHDLK--MIVVDY 385 (507)
T ss_pred HHHHH--HHCCEEEECCCCC-CHH-HHHHHHHHHHHHCCCC--EEEEEH
T ss_conf 99998--6198899849997-699-9999999998617999--899845
No 312
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.23 E-value=0.076 Score=34.28 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=31.8
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 0002588418996234433346889999999986148950782054221
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
+...++ .++.++|++||||||.+-=|+..+.-..| .|.+-..|...
T Consensus 25 l~i~~G--e~v~ivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~ 70 (221)
T cd03244 25 FSIKPG--EKVGIVGRTGSGKSSLLLALFRLVELSSG-SILIDGVDISK 70 (221)
T ss_pred EEECCC--CEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf 998699--89999999999899999999679718984-89999999661
No 313
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=96.23 E-value=0.012 Score=40.34 Aligned_cols=134 Identities=20% Similarity=0.281 Sum_probs=69.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHH--
Q ss_conf 8418996234433346889999999986148950782054221004779999851034742223--321036899999--
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV--IPEQSPEKIAIR-- 174 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~--~~~~dp~~i~~~-- 174 (461)
..-.|.+||-=-+||+|.++-|.+-+ +. + | ...+++++.-++..|-.-+.. .....+.+- .+
T Consensus 6 ~~l~i~~~GhVD~GKSTL~G~Ll~~~---g~--v-----~---~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er-~rGi 71 (443)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKL---GG--I-----D---KRTIEKFEKESAEMGKGSFKYAWVLDKLKAER-ERGI 71 (443)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHC---CC--C-----C---HHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHH-HCCC
T ss_conf 76599999477982888899999873---88--4-----6---88999998888871787200044530776676-3671
Q ss_pred ----HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH---------HHHHHHHHHHHHCC
Q ss_conf ----99999741588699833442221124689999998513851100031011122---------56888898876358
Q gi|254780711|r 175 ----ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ---------DAVHLARNFDKIVD 241 (461)
Q Consensus 175 ----a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq---------~a~~~a~~F~~~~~ 241 (461)
+..++...++.+.|||++|--.+=.++ |..+..+|-.+||+||..|- ...+.+. ....++
T Consensus 72 Tidv~~~~f~t~~~~~~iiD~PGH~~fi~nm------i~Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~-i~~~lg 144 (443)
T PTZ00141 72 TIDIALWKFETPKYYYTVIDAPGHRDFIKNM------ITGTSQADVALLVVPAEVGGFEGAFSKEGQTREHAL-LAFTLG 144 (443)
T ss_pred EEEEEEEEEECCCEEEEEEECCCHHHHHHHH------HHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHH-HHHHCC
T ss_conf 0734799994398899999899728889999------963410775899998677852134666786399999-999739
Q ss_pred CCCE--EEEECCCC
Q ss_conf 4407--76411576
Q gi|254780711|r 242 LTGI--ILTRMDGD 253 (461)
Q Consensus 242 i~gi--IlTKlD~~ 253 (461)
+..+ .+||+|--
T Consensus 145 v~~iIVaVNKmD~v 158 (443)
T PTZ00141 145 VKQIIVGINKMDTC 158 (443)
T ss_pred CCEEEEEEEEECCC
T ss_conf 97599999962156
No 314
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.23 E-value=0.05 Score=35.69 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=78.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECC-CCCCCH-----HHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 841899623443334688999999998614895078205-422100-----47799998510347422233210368999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASL-DVHRPA-----AQEQLRYLGEQIQVDTLEVIPEQSPEKIA 172 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~-Dt~R~a-----A~eQL~~~a~~~~v~~~~~~~~~dp~~i~ 172 (461)
+-..|.++|-.|+||||.+-+|.++--. -.+.+=|.+ ++-+.+ ..||-+ |+.+.++
T Consensus 9 ~~RniaIi~H~dAGKTTLtE~lL~~~Ga--I~~~G~V~~~~~~~~~~sD~~~~E~~R------giSI~ss---------- 70 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGA--IQEAGTVKGRKSGRHATSDWMEMEKQR------GISVTSS---------- 70 (526)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC--CCCCCEEECCCCCCCCCCCCCHHHHHC------CCEEECC----------
T ss_conf 1177999937898989999999974675--244846631467886467885889975------9648615----------
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHH--HHCCCCCE-EEEE
Q ss_conf 99999997415886998334422211246899999985138511000310111225688889887--63584407-7641
Q gi|254780711|r 173 IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFD--KIVDLTGI-ILTR 249 (461)
Q Consensus 173 ~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~--~~~~i~gi-IlTK 249 (461)
+-.+.-+++-+=||||+|-. +-..|...-.+++ |-.++|+||..|=++-. -+.|. ..-++--+ .+.|
T Consensus 71 ---v~~~e~~~~~iNliDTPGh~----DF~~e~~raL~a~--D~Av~Vida~~GVe~qT-e~~w~~~~~~~iP~i~FINK 140 (526)
T PRK00741 71 ---VMQFPYRDCLINLLDTPGHE----DFSEDTYRTLTAV--DSALMVIDAAKGVEPQT-RKLMEVCRLRDTPIFTFINK 140 (526)
T ss_pred ---EEEEEECCEEEEEEECCCCH----HHHHHHHHHHHHH--CEEEEEEECCCCCCHHH-HHHHHHHHHCCCCEEEEEEC
T ss_conf ---17786789899999098946----7789999999873--75999997775523336-89999988639988999965
Q ss_pred CCCC-CCCCHHH-HHHHHHCCCHH----HEECCCC
Q ss_conf 1576-6330367-77888478730----2615867
Q gi|254780711|r 250 MDGD-GRGGAAL-SMRTVTGKPIK----AIGTGEK 278 (461)
Q Consensus 250 lD~~-akgG~al-s~~~~~~~PI~----fig~GE~ 278 (461)
||-. +..-.+| ++....|..+. =||.|+.
T Consensus 141 mDR~~ad~~~~l~ei~~~lg~~~~p~~~Pig~g~~ 175 (526)
T PRK00741 141 LDRDGREPLELLDEIEEVLGIACAPITWPIGMGKR 175 (526)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 67678987898877888747873688830367886
No 315
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.23 E-value=0.058 Score=35.20 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=27.3
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 02588418996234433346889999999986148950782
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMA 135 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv 135 (461)
+.-.+-.++.++|+|||||||.+-=|+..++-..|. +.+-
T Consensus 33 ~~I~~GEiv~LiG~nGaGKSTLlr~i~Gl~~p~~G~-I~~~ 72 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPTAGD-LLAG 72 (257)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEEC
T ss_conf 588799899999899888999999996589888870-8989
No 316
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.23 E-value=0.023 Score=38.19 Aligned_cols=172 Identities=17% Similarity=0.204 Sum_probs=90.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC----------------HHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 344333468899999999861489507820542210----------------0477999985103474222332103689
Q gi|254780711|r 107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP----------------AAQEQLRYLGEQIQVDTLEVIPEQSPEK 170 (461)
Q Consensus 107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~----------------aA~eQL~~~a~~~~v~~~~~~~~~dp~~ 170 (461)
-+-|+|||-++.-||.+++. .|.+|++++=---|- .+=|-+ .++..-++|++.+.. -.
T Consensus 58 tvGGtGKTP~v~~la~~l~~-~g~~~~IlSRGYg~~~~~~~~v~~~~~~~~~vGDEpl-lla~~~~~~v~V~~~---R~- 131 (334)
T PRK00652 58 TVGGNGKTPVVIWLAEQLQA-RGVKVGVVSRGYGGKSKGYPLVLPADTTAAEVGDEPV-LIAQRTGAPVAVSPD---RV- 131 (334)
T ss_pred EECCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCEEEECCCCCHHHCCCHHH-HHHHCCCCCEEEECC---HH-
T ss_conf 87887779999999999997-6993678734667656787276179998355186899-985178983999566---89-
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHH----HHHHHHHHHCCCCC
Q ss_conf 99999999974158869983344222112468999999851385110003101112--2568----88898876358440
Q gi|254780711|r 171 IAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG--QDAV----HLARNFDKIVDLTG 244 (461)
Q Consensus 171 i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~----~~a~~F~~~~~i~g 244 (461)
+|++++...++|+||.|-+=- |.. +++|--++|+|+..+ .+-+ .-.+-.+..-..+-
T Consensus 132 ---~~~~~l~~~~~dviIlDDGfQ-h~~-------------l~rdl~Ivlid~~~~fgn~~llP~GpLREp~~~l~rAD~ 194 (334)
T PRK00652 132 ---KAIKALLALGADIIILDDGLQ-HYR-------------LHRDFEIVVVDGQRRFGNGWLLPAGPLREPPSRLKSADA 194 (334)
T ss_pred ---HHHHHHHHCCCCEEEECCCCC-CCC-------------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCE
T ss_conf ---999999965999999747665-664-------------468879999747767889867758656589647614689
Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 77641157663303677788847873026158672321001368899877358627889998742
Q gi|254780711|r 245 IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAAR 309 (461)
Q Consensus 245 iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~ 309 (461)
+|+++-+.. ..-....... ....-+-+++..+.+. ..+ +-..-|.||...+.+-.++
T Consensus 195 ii~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~---~k~-v~afsGIanP~~F~~~L~~ 251 (334)
T PRK00652 195 VIVNGGDAQ-EGEIPMRLAP---GAAVNLRTGESRDVLK---GKR-VVAFAGIGHPPRFFATLRN 251 (334)
T ss_pred EEEECCCCC-CHHHHHHHCC---CCCEECCCCCCCCCCC---CCE-EEEEEECCCHHHHHHHHHH
T ss_conf 999388543-1104555365---6636766655463357---981-8999944886999999997
No 317
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.15 Score=32.13 Aligned_cols=214 Identities=17% Similarity=0.242 Sum_probs=111.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHH
Q ss_conf 588418996234433346889999999986148---950782054221004779999851034742223321-0368999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK---KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIA 172 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~---~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~ 172 (461)
..-|+-+||+|+.|+|||||+-=||+.+--.++ ..+ -.|... +....-..++++..... ...++-+
T Consensus 35 ~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC--~~C~~C--------~~i~~g~~~Dv~Eidaas~~gvd~i 104 (541)
T PRK05563 35 NRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPC--NECEIC--------KKINEGLLMDVIEIDAASNNGVDDI 104 (541)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCCHHH--------HHHHCCCCCCEEEECCCCCCCHHHH
T ss_conf 993204530387995899999999999579998889857--514889--------9985689887366244444788999
Q ss_pred HHHHHH---H-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHH----HHHHH------
Q ss_conf 999999---9-74158869983344222112468999999851385110003101112-256888----89887------
Q gi|254780711|r 173 IRATQS---A-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHL----ARNFD------ 237 (461)
Q Consensus 173 ~~a~~~---a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~----a~~F~------ 237 (461)
++-.+. + ....|-+.|||-+-.+..+. +.-|.+..+.- |.+++|++ |+|- +....+ .+.|.
T Consensus 105 R~~~~~~~~~p~~~~~Kv~IiDEvhmls~~a--~nallKtlEeP-p~~~~Fil-atte~~ki~~tI~SRcq~f~f~~i~~ 180 (541)
T PRK05563 105 REIIENVKYPPQEGKYKVYIMDEVHMLSQGA--VNAFLKTLEEP-PSNVIFIL-ATTDPQKLPITILSRCQRFDFKRIKV 180 (541)
T ss_pred HHHHHHCEECCCCCCEEEEEEECCCCCCHHH--HHHHHHHHHCC-CCCCEEEE-ECCCCCCCCHHHHHHEEEEEEEECCH
T ss_conf 9999761048767870599997723389999--99999998548-77756999-76984427455674213577543899
Q ss_pred -------------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf -------------635844----077641157663303677788847873026158672321001368899877358627
Q gi|254780711|r 238 -------------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV 300 (461)
Q Consensus 238 -------------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~ 300 (461)
+.+.++ .+|...-||+-| -|||+-... |.| |.| +++ ..-+..+||+-|-
T Consensus 181 ~~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmR--DAlslLdQ~---is~-~~~-~it-------~~~v~~~lG~~~~ 246 (541)
T PRK05563 181 KDIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMR--DALSILDQA---ISM-GDG-KVD-------YDDVVSMLGLVTN 246 (541)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHHH---HHH-CCC-CCC-------HHHHHHHHCCCCH
T ss_conf 99999999999984999878999999974599778--899999999---983-599-866-------9999999689998
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 889998742112678--99888653104637999999999
Q gi|254780711|r 301 VSLVEKAARNLNEKQ--AALTAKKIAKGKFDLEDLAEQFR 338 (461)
Q Consensus 301 ~~l~e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~Ql~ 338 (461)
..+.+-+....+.+. +-....++...-.+...|++++-
T Consensus 247 ~~l~~l~~~i~~~d~~~~l~~~~~i~~~G~d~~~fl~dLi 286 (541)
T PRK05563 247 ENLFDITDSIIEKDIEKSMEIIDDIVLSGKDIYNFIKDLI 286 (541)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999858999999999999986999999999999
No 318
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.22 E-value=0.052 Score=35.57 Aligned_cols=188 Identities=15% Similarity=0.167 Sum_probs=82.6
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 025884189962344333468899999999861489-----507820542210047799998510347422233210368
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKK-----KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPE 169 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~-----kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~ 169 (461)
+.-.+-..+.+||++||||||.+-=|+.+|.-..|. ++.++.-|.|--.+ +..+ |+.+-.......-.
T Consensus 58 f~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~p~~G~I~~~g~i~~v~Q~~~lf~~-----Tire--NI~~g~~~~~~~~~ 130 (282)
T cd03291 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPG-----TIKE--NIIFGVSYDEYRYK 130 (282)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCC-----CHHH--HHHCCCCCCHHHHH
T ss_conf 9984999999999999819999999957872786589999999986574422671-----0999--97516886889999
Q ss_pred HHHHHH-HHHHH---HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHHHHHHHH-----
Q ss_conf 999999-99997---415886998334422211246899999985138511000310-11122568888988763-----
Q gi|254780711|r 170 KIAIRA-TQSAR---DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLARNFDKI----- 239 (461)
Q Consensus 170 ~i~~~a-~~~a~---~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a~~F~~~----- 239 (461)
++++.+ +.... .+++|.++-+ .|. ..... -.+.-.|.+++--+-.+|++| ++.+-|.....+.|...
T Consensus 131 ~~~~~~~l~~~i~~lp~g~~t~vge-~G~-~LSGG-QkQRlaiARALl~~p~IliLDEpTS~LD~~tE~~I~~~~l~~~~ 207 (282)
T cd03291 131 SVVKACQLEEDITKFPEKDNTVLGE-GGI-TLSGG-QRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM 207 (282)
T ss_pred HHHHHHCCHHHHHHCCCCCCCEECC-CCC-CCCHH-HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999851499998463425523003-677-58999-99999999998428998998687766898789999999999986
Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC-----CCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf 5844077641157663303677788847873026158672-----321001368899877358627889
Q gi|254780711|r 240 VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI-----NDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 240 ~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~-----~dle~F~p~~~~~riLGmgD~~~l 303 (461)
-+-|-+++|- | |+.... -=-|.++-.|+-+ +.|-.-+| .|++.+...+.+.-|
T Consensus 208 ~~kTvI~ItH-----r----L~~i~~-aDrIiVL~~G~Ive~Gth~ELm~~~g-~ya~~~~~~~~~~~~ 265 (282)
T cd03291 208 ANKTRILVTS-----K----MEHLKK-ADKILILHEGSSYFYGTFSELQSLRP-DFSSKLMGYDTFDQF 265 (282)
T ss_pred CCCEEEEEEC-----C----HHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC-HHHHHHHCCCCCCHH
T ss_conf 8998999937-----8----888986-99999998988999748899863497-899998537640011
No 319
>TIGR01188 drrA daunorubicin resistance ABC transporter, ATP-binding protein; InterPro: IPR005894 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. In other words it functions as an ATP dependent antiporter. .
Probab=96.22 E-value=0.0029 Score=45.14 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=42.7
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH
Q ss_conf 100025884189962344333468899999999861489507820542210047799
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL 148 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL 148 (461)
.++++-..=.|+=|.||||+|||||+-=|+--++=..|. .-|..-|.-|=++--+.
T Consensus 13 gv~f~V~~G~vfGfLGPNGAGKTTti~mLtTll~P~sG~-A~V~GYDvvreP~kl~V 68 (343)
T TIGR01188 13 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLKPTSGT-ARVAGYDVVREPRKLKV 68 (343)
T ss_pred CCCCEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCE-EEEEEEECCCCHHHCCC
T ss_conf 542053062489976879985133563410255799876-89983210236304032
No 320
>CHL00071 tufA elongation factor Tu
Probab=96.22 E-value=0.015 Score=39.75 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=69.1
Q ss_pred CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 25884-18996234433346889999999986148950782054221004779999851034742223321036899999
Q gi|254780711|r 96 NAPSP-LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR 174 (461)
Q Consensus 96 ~~~~p-~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~ 174 (461)
...+| -.|.++|-=-+||||.++-|...+... +..-+- +....|++.. -+.-|+.. | +
T Consensus 7 ~~~k~~vni~~~GHVD~GKSTL~g~L~~~~~~~-~~~~~~------~~~~~D~~~e-Er~rGiTi-------d---~--- 65 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAN-GGAKGK------KYDEIDSAPE-EKARGITI-------N---T--- 65 (409)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-CCHHHH------HHHHCCCCHH-HHHCCCEE-------E---E---
T ss_conf 689986999999545883999999986453004-513343------1553237976-87369448-------8---0---
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---H--HHHHHHHHHHHHCCCCCE-E-E
Q ss_conf 9999974158869983344222112468999999851385110003101112---2--568888988763584407-7-6
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---Q--DAVHLARNFDKIVDLTGI-I-L 247 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q--~a~~~a~~F~~~~~i~gi-I-l 247 (461)
+..++...++.+.+||++|--..=.++ |..+..+|-.+||+||..| | +....++ .+++.-+ + +
T Consensus 66 ~~~~~et~~~~~~~iD~PGH~~fv~nm------i~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~----~lgV~~~IVav 135 (409)
T CHL00071 66 AHVEYETENRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVSAADGPMPQTKEHILLAK----QVGVPNIVVFL 135 (409)
T ss_pred CEEEEECCCEEEEEEECCCHHHHHHHH------HHHHCCCCCEEEEEECCCCCCCCHHHHHHHHH----HCCCCCEEEEE
T ss_conf 248996287599998679678999998------75230158128999868788500499999999----73999365555
Q ss_pred EECCCC
Q ss_conf 411576
Q gi|254780711|r 248 TRMDGD 253 (461)
Q Consensus 248 TKlD~~ 253 (461)
||+|.-
T Consensus 136 nKmD~v 141 (409)
T CHL00071 136 NKEDQV 141 (409)
T ss_pred ECCCCC
T ss_conf 567985
No 321
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=96.22 E-value=0.05 Score=35.70 Aligned_cols=146 Identities=17% Similarity=0.191 Sum_probs=86.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
.-.|.++|-.-+||||---.|.-..++-+|. + ||.|- ...+. +
T Consensus 3 ~i~IALvGNPN~GKSTLFN~LTG~~q~VgNw-P-----------------------GvTVE-kk~G~------------~ 45 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW-A-----------------------GVTVE-RKEGQ------------F 45 (772)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECC-C-----------------------CCEEE-EEEEE------------E
T ss_conf 3569988899878999999986899835789-9-----------------------76474-23899------------9
Q ss_pred HHCCCCEEEEECCCCCCC----HHHHHHHHHHHH--HHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf 741588699833442221----124689999998--513851100031011122568888988763584-4077641157
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHI----NDSLMQEISEIK--SLTNPHEILLVADALTGQDAVHLARNFDKIVDL-TGIILTRMDG 252 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~----d~~lm~El~~i~--~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i-~giIlTKlD~ 252 (461)
+.+++++-+||.+|-... +++-++|.-... ..-+||-++-|+||+.=.-..--+-..-+ +++ .=+.+..+|.
T Consensus 46 ~~~~~~~~ivDLPG~YSL~~~S~e~s~dE~Var~~ll~~~pDvvvnVvDAtnLeRnLyLt~QllE-lg~PvVvaLNM~D~ 124 (772)
T PRK09554 46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLE-LGIPCIVALNMLDI 124 (772)
T ss_pred EECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH-CCCCEEEEEECHHH
T ss_conf 96894699997997786999997777308999998613999899998016875442899999997-49998999877998
Q ss_pred CCCCCHHH---HHHHHHCCCHHHE--ECCCCCCCCC
Q ss_conf 66330367---7788847873026--1586723210
Q gi|254780711|r 253 DGRGGAAL---SMRTVTGKPIKAI--GTGEKINDLE 283 (461)
Q Consensus 253 ~akgG~al---s~~~~~~~PI~fi--g~GE~~~dle 283 (461)
-.+-|.-+ ......|+|+.-+ -.|+.+++|.
T Consensus 125 A~~~Gi~ID~~~Ls~~LGvPVV~~~A~~g~Gi~eL~ 160 (772)
T PRK09554 125 AEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALK 160 (772)
T ss_pred HHHCCCEECHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 988779328999999858998999827887999999
No 322
>KOG0734 consensus
Probab=96.20 E-value=0.069 Score=34.60 Aligned_cols=181 Identities=23% Similarity=0.264 Sum_probs=99.6
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999871877421000258841899623443334688999999998614895078205422100477999985103474
Q gi|254780711|r 79 HDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD 158 (461)
Q Consensus 79 ~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~ 158 (461)
.+|+++.|.....--.+..+-|.=||++|+.|.|||- ||+-. |-..+||
T Consensus 316 LeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTl----LARAv---------------------------AGEA~VP 364 (752)
T KOG0734 316 LEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTL----LARAV---------------------------AGEAGVP 364 (752)
T ss_pred HHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHH----HHHHH---------------------------HCCCCCC
T ss_conf 9999998609087643147588853876899975569----99986---------------------------0556897
Q ss_pred CCCC-CCCCH------HHHHHHHHHHHHHHCCCCEEEEEC---CC--CCCCHHHHHH----HHHHHHHHCCCCCCCCCCC
Q ss_conf 2223-32103------689999999999741588699833---44--2221124689----9999985138511000310
Q gi|254780711|r 159 TLEV-IPEQS------PEKIAIRATQSARDGGYDAVILDT---AG--RNHINDSLMQ----EISEIKSLTNPHEILLVAD 222 (461)
Q Consensus 159 ~~~~-~~~~d------p~~i~~~a~~~a~~~~~D~iiiDT---aG--R~~~d~~lm~----El~~i~~~~~p~e~~lV~d 222 (461)
||.. .++=| -+.=+++-...|+.+.--+|+||- .| |.+.|...+. +|--=.+-.+++|-+.|+-
T Consensus 365 FF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvig 444 (752)
T KOG0734 365 FFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIG 444 (752)
T ss_pred EEECCCCCHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 47416620445422014899999999987349859997200220566786277899989999999842867688669995
Q ss_pred HHCCHHHHHHHHH----HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC-
Q ss_conf 1112256888898----87635844077641157663303677788847873026158672321001368899877358-
Q gi|254780711|r 223 ALTGQDAVHLARN----FDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM- 297 (461)
Q Consensus 223 a~~Gq~a~~~a~~----F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm- 297 (461)
|+.=-++++.|-. |... |.+..- |-+|-..+=-.|..++|. +|. -||+-+|.---|+
T Consensus 445 ATNfpe~LD~AL~RPGRFD~~-----v~Vp~P--Dv~GR~eIL~~yl~ki~~-----~~~------VD~~iiARGT~GFs 506 (752)
T KOG0734 445 ATNFPEALDKALTRPGRFDRH-----VTVPLP--DVRGRTEILKLYLSKIPL-----DED------VDPKIIARGTPGFS 506 (752)
T ss_pred CCCCHHHHHHHHCCCCCCCEE-----EECCCC--CCCCHHHHHHHHHHCCCC-----CCC------CCHHHHCCCCCCCC
T ss_conf 168745556873488755336-----746897--733289999999834876-----567------78767226889876
Q ss_pred -CCHHHHHHHHH
Q ss_conf -62788999874
Q gi|254780711|r 298 -GDVVSLVEKAA 308 (461)
Q Consensus 298 -gD~~~l~e~~~ 308 (461)
.|+.-||..|.
T Consensus 507 GAdLaNlVNqAA 518 (752)
T KOG0734 507 GADLANLVNQAA 518 (752)
T ss_pred HHHHHHHHHHHH
T ss_conf 578998888999
No 323
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.20 E-value=0.041 Score=36.30 Aligned_cols=126 Identities=17% Similarity=0.256 Sum_probs=67.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--HCCCCEE--EECCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHH
Q ss_conf 8996234433346889999999986--1489507--82054221004779999851034-74222332103689999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKT--LKKKKIL--MASLDVHRPAAQEQLRYLGEQIQ-VDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~--~~~~kV~--lv~~Dt~R~aA~eQL~~~a~~~~-v~~~~~~~~~dp~~i~~~a~ 176 (461)
-|.++|--++||||-+-.|..+-.. ..+.... .-..|+ ...||-+...-... +.+. . .+
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~---~~~E~eRgiTI~s~~~sl~---~-~~--------- 65 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDI---RKDEQERGISIKSSPISLV---L-PD--------- 65 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC---CHHHHHHCCCEECCEEEEE---E-EC---------
T ss_conf 599982789898999999999734455540444211357516---4665420355861459999---8-25---------
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---HHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99974158869983344222112468999999851385110003101112---25688889887635844077641157
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---QDAVHLARNFDKIVDLTGIILTRMDG 252 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q~a~~~a~~F~~~~~i~giIlTKlD~ 252 (461)
.+.+.|-+-||||+|.. +...|...-.+++ |-.+||+||.-| |.-...-.+..+.++ -=+++.|+|-
T Consensus 66 --~~~k~~~inlIDTPGH~----dF~~ev~~al~~~--DgailVVDa~eGv~~qT~~~l~~a~~~~l~-~ilviNKiDR 135 (213)
T cd04167 66 --SKGKSYLFNIIDTPGHV----NFMDEVAAALRLS--DGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDR 135 (213)
T ss_pred --CCCCEEEEEEEECCCCH----HHHHHHHHHHHHC--CEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC
T ss_conf --66750578778898724----1799999888637--767999987888757799999999986999-8999988234
No 324
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.20 E-value=0.033 Score=37.10 Aligned_cols=197 Identities=17% Similarity=0.182 Sum_probs=109.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCC------------CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8418996234433346889999999986148------------9507820542210047799998510347422233210
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK------------KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ 166 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~------------~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~ 166 (461)
...|.++.|=.|.||||++=-++..|...++ .+| +-||=|-||| -||....-..-..+.+. -+.
T Consensus 364 ~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v-~LaAPTGrAA--kRl~E~TG~~a~TIHRL-lG~ 439 (769)
T TIGR01448 364 QDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPV-VLAAPTGRAA--KRLAEVTGLEALTIHRL-LGY 439 (769)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE-EEECCCHHHH--HHCCCCCCCHHHHHHHH-HCC
T ss_conf 0948998577888616899999999987168775531245677648-8737743788--85110026212347786-368
Q ss_pred HHHHHHHH-HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHC--CHHHHHHHHHHHHHCCC
Q ss_conf 36899999-99999741588699833442221124689999998513851-1000310111--22568888988763584
Q gi|254780711|r 167 SPEKIAIR-ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADALT--GQDAVHLARNFDKIVDL 242 (461)
Q Consensus 167 dp~~i~~~-a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da~~--Gq~a~~~a~~F~~~~~i 242 (461)
++-.-..+ -++ ..-+||+||||=.+. .|++|+..| ..++.++ .+|||-|+-- -=++-.+-+.--++--+
T Consensus 440 ~~~~~~~~k~~~--~~~~~DL~IvDE~SM--~Dt~L~~~l---L~a~P~~a~lllVGD~DQLPSV~pG~VL~DLi~s~~i 512 (769)
T TIGR01448 440 GSDTKSENKNLE--DPIDADLLIVDESSM--VDTWLASSL---LAAVPDHARLLLVGDADQLPSVGPGQVLKDLIQSKVI 512 (769)
T ss_pred CCCCCCCCHHHC--CCCCCCEEEEECCCH--HHHHHHHHH---HHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 988873211011--347877699814621--889999999---8617977779888376888988644089999846886
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCHH-HEECCCCCCCCCCCCHHH-HHHHHHCCCCHHHHHHHHH
Q ss_conf 40776411576633036777888478730-261586723210013688-9987735862788999874
Q gi|254780711|r 243 TGIILTRMDGDGRGGAALSMRTVTGKPIK-AIGTGEKINDLENFFPDR-IANRILGMGDVVSLVEKAA 308 (461)
Q Consensus 243 ~giIlTKlD~~akgG~als~~~~~~~PI~-fig~GE~~~dle~F~p~~-~~~riLGmgD~~~l~e~~~ 308 (461)
--+=|||+=--+.+-.++...+....-.. .+-..+--.|+..+..+| ... -+.+-+..+||++-
T Consensus 513 P~~~LT~vyRQ~~~S~Ii~~Ah~~~~G~~Pvlnss~~~~Df~~~~~~~s~~e--~~~~~i~~~v~~~~ 578 (769)
T TIGR01448 513 PVTRLTKVYRQAEGSSIITLAHKILQGEAPVLNSSSAKKDFKFLKLDRSEPE--EAAKHIPLMVEKIV 578 (769)
T ss_pred CEEECCCEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHH
T ss_conf 6121211124113664678889873178875232446766777764001010--66678999998877
No 325
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.19 E-value=0.13 Score=32.59 Aligned_cols=147 Identities=20% Similarity=0.209 Sum_probs=82.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
+.-| .|+++|..-|||+|...|+-. .+|=++. --|- .+.+.|-.
T Consensus 166 p~~p-TivVaG~PNVGKSSlv~~lT~-------AkpEvA~-YPFT----------TK~i~vGh----------------- 209 (346)
T COG1084 166 PDLP-TIVVAGYPNVGKSSLVRKLTT-------AKPEVAP-YPFT----------TKGIHVGH----------------- 209 (346)
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHHC-------CCCCCCC-CCCC----------CCCEEEEE-----------------
T ss_conf 9997-389856998758999988754-------8976678-8853----------36546765-----------------
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHH--HHHHCC-CCCCCCCCCHH--CCHHHHHHHHHHHHHCC----CCCEEE
Q ss_conf 9997415886998334422211246899999--985138-51100031011--12256888898876358----440776
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHINDSLMQEISE--IKSLTN-PHEILLVADAL--TGQDAVHLARNFDKIVD----LTGIIL 247 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~--i~~~~~-p~e~~lV~da~--~Gq~a~~~a~~F~~~~~----i~giIl 247 (461)
+.....-+=+|||.|=+....+-|.++++ |..... -+-++|++|++ -|-.--.|.+-|++.-+ ..=+++
T Consensus 210 --fe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~ 287 (346)
T COG1084 210 --FERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVI 287 (346)
T ss_pred --EECCCCEEEEECCCCCCCCCHHHHCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf --504870589842886457885773689999999999742858999768500289999999999999985388769997
Q ss_pred EECCCCCCCC---HHHHHHHHHCC-CHHHEECCCCCCC
Q ss_conf 4115766330---36777888478-7302615867232
Q gi|254780711|r 248 TRMDGDGRGG---AALSMRTVTGK-PIKAIGTGEKIND 281 (461)
Q Consensus 248 TKlD~~akgG---~als~~~~~~~-PI~fig~GE~~~d 281 (461)
+|.|-..... ...++..+.+. |++-+.+.....|
T Consensus 288 nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 325 (346)
T COG1084 288 NKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLD 325 (346)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHH
T ss_conf 41012466678999999876326554313543000178
No 326
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.025 Score=37.92 Aligned_cols=101 Identities=23% Similarity=0.221 Sum_probs=56.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4189962344333468899999999861489507820542210047799998510347-422233210368999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV-DTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v-~~~~~~~~~dp~~i~~~a~~~ 178 (461)
-.++.++|+||+||||.+-=|+..+....| +|.+-..|..+..- +.+.+.++. +=+ +..++--+.+ ..
T Consensus 25 Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G-~i~~~g~~~~~~~~----~~~~~~i~~v~QL-SgGqkqrv~i-----A~ 93 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAKLPL----EELRRRIGYVPQL-SGGQRQRVAL-----AR 93 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCH----HHHHHCCCCCCCC-CHHHHHHHHH-----HH
T ss_conf 979999878899989999999588479962-89999999997999----9999406087668-8699999999-----99
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9741588699833442221124689999998513
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLT 212 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~ 212 (461)
+-..+-+++|.|-+- ...|..--.++.++.+..
T Consensus 94 al~~~p~ililDEPt-sgLD~~~~~~l~~~i~~l 126 (157)
T cd00267 94 ALLLNPDLLLLDEPT-SGLDPASRERLLELLREL 126 (157)
T ss_pred HHHCCCCEEEEECCC-CCCCHHHHHHHHHHHHHH
T ss_conf 997099999996987-668999999999999999
No 327
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.19 E-value=0.08 Score=34.13 Aligned_cols=121 Identities=20% Similarity=0.272 Sum_probs=60.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
...| .|.++|=.-|||+|-+=.|. . .++++.++ ++ ||--- .+.+|..
T Consensus 16 ~~~p-~IaivGrpNvGKSTL~N~L~----g--~k~~a~vs-~~--pGtTr---------~i~~~~~-------------- 62 (179)
T TIGR03598 16 DDGP-EIAFAGRSNVGKSSLINALT----N--RKKLARTS-KT--PGRTQ---------LINFFEV-------------- 62 (179)
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHH----C--CCCEEEEC-CC--CCEEE---------ECCEEEE--------------
T ss_conf 8897-89998699988899999986----8--98558970-89--97366---------0232010--------------
Q ss_pred HHHHHCCCCEEEEECCCC-----CCCHHHHHHH-HHHHHHH-CCCCCCCCCCCHHCC--HHHHHHHHHHHHHCCC-CCEE
Q ss_conf 999741588699833442-----2211246899-9999851-385110003101112--2568888988763584-4077
Q gi|254780711|r 177 QSARDGGYDAVILDTAGR-----NHINDSLMQE-ISEIKSL-TNPHEILLVADALTG--QDAVHLARNFDKIVDL-TGII 246 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR-----~~~d~~lm~E-l~~i~~~-~~p~e~~lV~da~~G--q~a~~~a~~F~~~~~i-~giI 246 (461)
+.++++|||+|- .....+.+.+ +...... -.-+-++||+||..| ..-...++...+. +. -=++
T Consensus 63 ------~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~-~kp~iiv 135 (179)
T TIGR03598 63 ------NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDER-GIPVLIV 135 (179)
T ss_pred ------CCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEE
T ss_conf ------473699977760211278888999999999999998864302898743779989999999999975-9988999
Q ss_pred EEECCCCCCCC
Q ss_conf 64115766330
Q gi|254780711|r 247 LTRMDGDGRGG 257 (461)
Q Consensus 247 lTKlD~~akgG 257 (461)
++|.|--.+..
T Consensus 136 lNK~Dll~~~~ 146 (179)
T TIGR03598 136 LTKADKLKKSE 146 (179)
T ss_pred EECCCCCCHHH
T ss_conf 97813069899
No 328
>PRK00049 elongation factor Tu; Reviewed
Probab=96.19 E-value=0.024 Score=38.16 Aligned_cols=126 Identities=19% Similarity=0.150 Sum_probs=69.6
Q ss_pred CCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 884-1899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r 98 PSP-LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 98 ~~p-~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
.+| -.|.++|-=-+||||.++-|...+....++.-.-... ..|+++.=-+ -|+.+-.. .
T Consensus 9 ~kp~~ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~------~~D~~~eEr~-rGiTid~~-------------~ 68 (397)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYD------QIDNAPEEKA-RGITINTA-------------H 68 (397)
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHH------HCCCCHHHHH-CCCEEEEE-------------E
T ss_conf 99832999991258889999999986666543853100133------3025766762-58169987-------------9
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---H--HHHHHHHHHHHHCCCCC-EE-EEE
Q ss_conf 99974158869983344222112468999999851385110003101112---2--56888898876358440-77-641
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---Q--DAVHLARNFDKIVDLTG-II-LTR 249 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q--~a~~~a~~F~~~~~i~g-iI-lTK 249 (461)
.++..+++.+.+||++|--..=.++ |..+.+.|-.+||+||..| | +....+ ..+++.- +| +||
T Consensus 69 ~~~~t~~~~~~~iD~PGH~~fiknm------I~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~----~~LGv~~~iV~vnK 138 (397)
T PRK00049 69 VEYETEKRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVSAADGPMPQTREHILLA----RQVGVPYIVVFLNK 138 (397)
T ss_pred EEEECCCCEEEEECCCCHHHHHHHH------HHHHCCCCEEEEEEECCCCCCHHHHHHHHHH----HHHCCCEEEEEEEC
T ss_conf 9997288149995178638889998------7301215679999974888665289999999----98099827999986
Q ss_pred CCCC
Q ss_conf 1576
Q gi|254780711|r 250 MDGD 253 (461)
Q Consensus 250 lD~~ 253 (461)
+|--
T Consensus 139 ~D~v 142 (397)
T PRK00049 139 CDMV 142 (397)
T ss_pred CCCC
T ss_conf 6888
No 329
>PRK12740 elongation factor G; Reviewed
Probab=96.18 E-value=0.097 Score=33.50 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=36.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---HHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 158869983344222112468999999851385110003101112---25688889887635844077641157
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---QDAVHLARNFDKIVDLTGIILTRMDG 252 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q~a~~~a~~F~~~~~i~giIlTKlD~ 252 (461)
+++-+=||||.|- .| -..|...-.+++ |-.++|+||.-| |.-.-.-++....++. =+++.|+|-
T Consensus 58 ~~~~iNlIDTPGH--vD--F~~EV~~aLrv~--DgAvlvVDaveGV~~qT~~v~r~a~~~~lp~-ilvINKiDr 124 (670)
T PRK12740 58 KGHKINIIDTPGH--VD--FTGEVERALRVL--DGAVVVVCAVGGVEVQTETVWRYAEEYGVPR-IAFVNKLDR 124 (670)
T ss_pred CCEEEEEEECCCC--CC--HHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCC
T ss_conf 9989999929797--51--489999999986--8689999789997378999999999879996-999979789
No 330
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.18 E-value=0.0089 Score=41.38 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=84.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----------CHHHHHHHHHH---HC-----------C
Q ss_conf 18996234433346889999999986148950782054221-----------00477999985---10-----------3
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-----------PAAQEQLRYLG---EQ-----------I 155 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-----------~aA~eQL~~~a---~~-----------~ 155 (461)
.+|.+.|=-|.|||||++-|++-|.. .|+||++|.||.-. +--+|.|+... +. -
T Consensus 3 ~~iaiyGKGGIGKSTttaNlsaALA~-~GkkV~~IgcDPk~DsT~~L~g~~~~tild~l~~~~~~~~~~~~ed~~~~G~~ 81 (269)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAALAK-LGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVFEGYN 81 (269)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHCCCCHHHCCHHHHHHCCCC
T ss_conf 39999789954788899999999997-69938998189973230112599878789999743876021256677633767
Q ss_pred CCCCCCC---CCCC----HHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HC
Q ss_conf 4742223---3210----36899999999997-4158869983344222112468999999851385110003101--11
Q gi|254780711|r 156 QVDTLEV---IPEQ----SPEKIAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LT 225 (461)
Q Consensus 156 ~v~~~~~---~~~~----dp~~i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~ 225 (461)
++.++.. +++. .-+..+.+-++... .+.||+|++|..|-----.=-| -+ . ..++++.|.++ |.
T Consensus 82 gv~cvEaGGP~pG~GCaGrgi~~~~~~L~~~~~~~~~D~Vl~DvlgdVvCGGFa~-Pi---~---~Ad~~~IVts~e~~a 154 (269)
T PRK13185 82 GVDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGGFAA-PL---Q---YADYALIVTANDFDS 154 (269)
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-CH---H---CCCEEEEEECCHHHH
T ss_conf 7056643899998776764318999999872874337879995367433365557-51---0---088899992530878
Q ss_pred CHHHHHHHHHHHH-----HCCCCCEEEEECCCCCCCCHHH-HHHHHHCCCHH
Q ss_conf 2256888898876-----3584407764115766330367-77888478730
Q gi|254780711|r 226 GQDAVHLARNFDK-----IVDLTGIILTRMDGDGRGGAAL-SMRTVTGKPIK 271 (461)
Q Consensus 226 Gq~a~~~a~~F~~-----~~~i~giIlTKlD~~akgG~al-s~~~~~~~PI~ 271 (461)
=.+|-+++..-++ .+.+.|+|.-+.++. ..+ -.+..++.|+.
T Consensus 155 l~aAnnI~~~i~~~a~~~~~rl~GiI~Nr~~~~----d~v~~fa~~~g~~vl 202 (269)
T PRK13185 155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSGGT----DQIDKFNERVGLRTL 202 (269)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH----HHHHHHHHHHCCCEE
T ss_conf 999999999998653015853232576168837----799999998699769
No 331
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.17 E-value=0.084 Score=33.95 Aligned_cols=202 Identities=8% Similarity=0.121 Sum_probs=86.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHH
Q ss_conf 58841899623443334688999999998614895078205422100477999985103474222332103-68999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQS-PEKIAIRA 175 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~d-p~~i~~~a 175 (461)
.+-|+..+|.|+.|+||||++..+|+.+-...... ...++. + .++.++.. .+.+ ...-..+.
T Consensus 17 ~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~--~~~~~~------------~--~~~~~id~-~~~~i~~~~i~~~ 79 (303)
T PRK07132 17 NKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLN--LNLEEL------------P--YNIFLFDI-FDEDLSKEEFLSA 79 (303)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCC------------C--CCCEEECC-CCCCHHHHHHHHH
T ss_conf 99761688678998679999999999972998788--875456------------5--32304133-2220016889999
Q ss_pred HHHHH-----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 99997-----4158869983344222112468999999851385110003101112256888898876358440776411
Q gi|254780711|r 176 TQSAR-----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRM 250 (461)
Q Consensus 176 ~~~a~-----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKl 250 (461)
++.+. ...+-++|||-|-++.... ..-|-+..+.- |..+++++-++--+....+...=++.+.+ .++
T Consensus 80 i~~~~~~~~~~~~~Kv~IIdea~~lt~~A--~NaLLKtLEEP-p~~~~fil~t~~~~~il~TI~SRCq~~~f-----~~~ 151 (303)
T PRK07132 80 IEKFSFSSFVSNQKKILIIKNIEKTSNSS--LNALLKTIEEP-SKNTYFLLTTKNINKVIPTIVSRCQVINV-----KEP 151 (303)
T ss_pred HHHHHHCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHCCCC-CCCEEEEEEECCHHHCCHHHHHCCEEEEC-----CCC
T ss_conf 99997366556870699981655339999--99999870389-86848999728824383778636656637-----889
Q ss_pred CCCCCCCHHHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 57663303677788847873026158672-32100136889987735862788999874211267899888653104637
Q gi|254780711|r 251 DGDGRGGAALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTAKKIAKGKFD 329 (461)
Q Consensus 251 D~~akgG~als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~ 329 (461)
+-. .++ .|+- .+.. ++.+.|...-|. ++|+...++.+--... ..+..+......+..++
T Consensus 152 ~~~----~i~----------~~l~-e~~~~~e~~~~~a~~~~----n~~~a~~~~~~e~~~~-~~~~~~~l~~~~~~~~~ 211 (303)
T PRK07132 152 DQQ----KIL----------AKLL-SQNKEKEFEKFYAYIFK----NFEDAIKYISKISENL-VKKFIKALNKSLKEKYS 211 (303)
T ss_pred CHH----HHH----------HHHH-HCCCCCHHHHHHHHHHC----CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 999----999----------9998-64775278999999974----7588999986423999-99999999987411478
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999998511
Q gi|254780711|r 330 LEDLAEQFRQTQKI 343 (461)
Q Consensus 330 l~Df~~Ql~~i~km 343 (461)
+-.|+++.....++
T Consensus 212 ~~~fl~~~~~~~~~ 225 (303)
T PRK07132 212 LLIFLNEKLNKENA 225 (303)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999988778479
No 332
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.056 Score=35.32 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 88418996234433346889999999986148950782054221
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
.+-.++.++|.|||||||.+-=|+..++-..| +|.+-.-|+.+
T Consensus 34 ~~Ge~vaivG~nGsGKSTLlk~l~Gll~p~~G-~I~v~G~~i~~ 76 (273)
T PRK13632 34 NEGEYVAILGHNGSGKSTISKILTGLLKPQSG-EIKIFGITISK 76 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf 49989999999998699999999738778887-59999999996
No 333
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=96.16 E-value=0.026 Score=37.89 Aligned_cols=199 Identities=19% Similarity=0.195 Sum_probs=95.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---------------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 44333468899999999861489507820542210---------------047799998510347422233210368999
Q gi|254780711|r 108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---------------AAQEQLRYLGEQIQVDTLEVIPEQSPEKIA 172 (461)
Q Consensus 108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---------------aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~ 172 (461)
+-|+|||-++..||.+++. .|.+|++++=---|- .+=|.+ .++...++|++.+ .|-.+-+
T Consensus 45 ~GGtGKTP~v~~l~~~l~~-~g~~~~ilSRGYg~~~~~~~~v~~~~~~~~~GDEp~-lla~~~~~~v~V~---~~R~~a~ 119 (318)
T pfam02606 45 VGGTGKTPLVIALAELLRA-RGLRPGVLSRGYGGKSKGPVLVDPGSSAAEVGDEPL-LLARRTPVPVVVG---PDRAAAA 119 (318)
T ss_pred ECCCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCEEECCCCCHHHCCCHHH-HHHHHCCCCEEEC---CCHHHHH
T ss_conf 5887858999999999997-699447832676765788789716889467396999-9987569859980---5289999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHH----HHHHHHHHHCCCCCEE
Q ss_conf 99999997415886998334422211246899999985138511000310111--22568----8889887635844077
Q gi|254780711|r 173 IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAV----HLARNFDKIVDLTGII 246 (461)
Q Consensus 173 ~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~----~~a~~F~~~~~i~giI 246 (461)
..++ ...++|+||.|-+=- |.. +.+|--++|+|+.- |.+-+ .--+-.+..-..+-+|
T Consensus 120 ~~l~---~~~~~dviIlDDGfQ-h~~-------------l~rDl~Ivl~d~~~~fgng~lLPaGpLREp~~~l~raD~ii 182 (318)
T pfam02606 120 RALL---EAHGADVIILDDGFQ-HYR-------------LARDLEIVVVDGARGFGNGRLLPAGPLREPLSRLKRADAVI 182 (318)
T ss_pred HHHH---HHCCCCEEEECCCCC-CCC-------------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEE
T ss_conf 9999---848997999148666-730-------------01886899972887887997785813548965870039999
Q ss_pred EEECCCCCCCCHHHHHHHHHCCCHHHE--ECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 641157663303677788847873026--1586723210013688998773586278899987421-1267899888653
Q gi|254780711|r 247 LTRMDGDGRGGAALSMRTVTGKPIKAI--GTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARN-LNEKQAALTAKKI 323 (461)
Q Consensus 247 lTKlD~~akgG~als~~~~~~~PI~fi--g~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~-~d~~~~~~l~~k~ 323 (461)
+|+-+....-..-..+....-.|..+. .+++ ..++. ..+ +-.+-|.||...+.+-.++. ++--.. ..=-
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~---~~~-v~a~sGIanP~~F~~~L~~~g~~i~~~---~~f~ 254 (318)
T pfam02606 183 LNGGEAADPEIAEAPVLRARLEPSAAVNLADGE-RRPLA---GKR-VLAFAGIGNPQRFFDTLRALGLEVVAT---LAFP 254 (318)
T ss_pred ECCCCCCHHHHHHCCHHHEEEEEEEEEECCCCC-CCCCC---CCE-EEEEEECCCHHHHHHHHHHCCCEEEEE---EECC
T ss_conf 939853211344323011488500447427732-00016---984-899996478799999999769878786---7778
Q ss_pred HCCCCCHHHHHHH
Q ss_conf 1046379999999
Q gi|254780711|r 324 AKGKFDLEDLAEQ 336 (461)
Q Consensus 324 ~~g~F~l~Df~~Q 336 (461)
-+-.|+-+|+.+=
T Consensus 255 DHh~y~~~dl~~i 267 (318)
T pfam02606 255 DHHPFTAADLAFL 267 (318)
T ss_pred CCCCCCHHHHHHH
T ss_conf 8777999999999
No 334
>PRK08694 consensus
Probab=96.15 E-value=0.16 Score=31.88 Aligned_cols=114 Identities=22% Similarity=0.216 Sum_probs=65.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC----HHHHHHHH
Q ss_conf 189962344333468899999999861489507820542210047799--998510347422233210----36899999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ----SPEKIAIR 174 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~----dp~~i~~~ 174 (461)
..|.+.|-.|.|||+.+--+|.....+++++|++.+..--+ +|| +.+|...+|+......+. +-..+ ..
T Consensus 219 ~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~~fSLEMs~----~~l~~Rlla~~s~v~~~~i~~g~l~~~e~~~~-~~ 293 (468)
T PRK08694 219 DLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMGG----AQLVMRMLGSVGRLDQSVLKTGRLEDEHWGRL-NE 293 (468)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCH----HHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHH-HH
T ss_conf 47999617865378999999999998479847997788999----99999999972598632110489999999999-99
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9999974158869983344222112468999999851385110003101
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
++... .+..+.|-||++....+ +....+++.+.-...--++|+|-
T Consensus 294 a~~~l--~~~pl~idd~~~~t~~~--i~a~~r~~~~~~~~kl~~vvIDY 338 (468)
T PRK08694 294 AVVKL--SDAPVYIDETPGLTALE--LRARARRLARQFNNKLGLIVIDY 338 (468)
T ss_pred HHHHH--HCCCEEEECCCCCCHHH--HHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 99998--62996897699998879--99999999998389873899736
No 335
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.051 Score=35.60 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=32.3
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 002588418996234433346889999999986148950782054221
Q gi|254780711|r 94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
++.-.+-.++.++|.+||||||.+-=|+..+.-..| +|.+-..|.-.
T Consensus 22 sl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~ 68 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILIDGVDLRD 68 (171)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf 899859989999999998399999999767758974-89999999885
No 336
>PRK08760 replicative DNA helicase; Provisional
Probab=96.14 E-value=0.16 Score=31.83 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=68.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC----HHHHHHHH
Q ss_conf 189962344333468899999999861489507820542210047799--998510347422233210----36899999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ----SPEKIAIR 174 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~----dp~~i~~~ 174 (461)
..|.+.|-.|.|||+.+--+|.....+++++|++.+..-- .+|| +.+|...+|+......+. +-..+ ..
T Consensus 230 ~LiViaaRPsmGKTalalnia~~~A~~~~~~V~~fSLEMs----~~ql~~Rlls~~s~v~~~~i~~g~l~~~e~~~~-~~ 304 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS----ASQLAMRLISSNGRINAQRLRTGALEDEDWARV-TG 304 (476)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHH-HH
T ss_conf 7799987788747899999999999837997899703699----999999999983389767776489999999999-99
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9999974158869983344222112468999999851385110003101
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
++.... +..+.|-||++-.. + .+-...+++++.-+++ ++|+|-
T Consensus 305 a~~~l~--~~~l~idD~~~~t~-~-~ir~~~R~~k~~~~l~--lvvIDY 347 (476)
T PRK08760 305 AIKMLK--ETKIFIDDTPGVSP-E-VLRSKCRRLKREHDLG--LIVIDY 347 (476)
T ss_pred HHHHHH--HCCCEEECCCCCCH-H-HHHHHHHHHHHHCCCC--EEEEEH
T ss_conf 999986--08816857999999-9-9999999998727998--799970
No 337
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.16 Score=31.81 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=68.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
+.-.+-+||+|+.|+||||++--+|..+--.+.-....-.|..-|- -.-+..-+|.++.....+=.++-+++-+
T Consensus 36 ~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~------i~~g~hpDv~~i~p~~~~i~id~iR~l~ 109 (395)
T PRK07940 36 SGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRT------VLAGTHPDVRVVVPEGLSIGVDEVREIV 109 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH------HHCCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 8766037636899878899999999996699999999987878999------8768998718982687768899999999
Q ss_pred HHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC
Q ss_conf 9997----41588699833442221124689999998513851100031011122568888988763584
Q gi|254780711|r 177 QSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDL 242 (461)
Q Consensus 177 ~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i 242 (461)
+.+. ..+|-|+|||-|-|+.... ..-|-|..+. .|..++|++=++.-+.-..++..=.+.+.+
T Consensus 110 ~~~~~~p~~~~~kv~ii~~a~~m~~~a--~NalLKtLEE-Pp~~~~fiL~t~~~~~llpTI~SRcq~~~f 176 (395)
T PRK07940 110 QIAARRPTTGRWRIVVIEDADRLTERA--ANALLKAVEE-PPPRTVWLLCAPSVEDVLPTIRSRCRHVAL 176 (395)
T ss_pred HHHHHCCCCCCCEEEEEECHHHHCHHH--HHHHHHHHCC-CCCCEEEEEEECCHHHHHHHHHHHHEECCC
T ss_conf 998527303795599980778748999--9999985217-888869998739978744688744000237
No 338
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.015 Score=39.66 Aligned_cols=76 Identities=36% Similarity=0.491 Sum_probs=48.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC--CCCCCCCHHH---HHHHHHH
Q ss_conf 8996234433346889999999986148950782054221004779999851034742--2233210368---9999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT--LEVIPEQSPE---KIAIRAT 176 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~--~~~~~~~dp~---~i~~~a~ 176 (461)
+|-+-|+.||||||-+.+||.+| |.+ .+-+.++||-=|.+ .|.++ |....++||- .|-+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~----gl~-~vsaG~iFR~~A~e--------~gmsl~ef~~~AE~~p~iD~~iD~rq~ 68 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL----GLK-LVSAGTIFREMARE--------RGMSLEEFSRYAEEDPEIDKEIDRRQK 68 (179)
T ss_pred EEEECCCCCCCCHHHHHHHHHHH----CCC-EEECCHHHHHHHHH--------CCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 79961799997027999999982----971-56212799999998--------399999999987519216699889999
Q ss_pred HHHHHCCCCEEEEECCCCC
Q ss_conf 9997415886998334422
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRN 195 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~ 195 (461)
+.++ .-|+|+ .||+
T Consensus 69 e~a~--~~nvVl---egrL 82 (179)
T COG1102 69 ELAK--EGNVVL---EGRL 82 (179)
T ss_pred HHHH--CCCEEE---HHHH
T ss_conf 9987--289587---0045
No 339
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.11 E-value=0.071 Score=34.53 Aligned_cols=214 Identities=17% Similarity=0.142 Sum_probs=100.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC---------------
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233---------------
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI--------------- 163 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~--------------- 163 (461)
+--++.++|+|||||||.+-=|+..+.-..|. |.+-.-|+-+.. . +.+.+++++= |..+
T Consensus 32 ~GE~vaivG~nGsGKSTL~k~l~Gl~~p~~G~-I~i~G~~i~~~~-~---~~lr~~ig~V-fQ~P~~~l~~~tV~e~iaf 105 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT-ITVGGMVLSEET-V---WDVRKQIGMV-FQNPDNQFVGTTVQDDVAF 105 (279)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCC-H---HHHHHHEEEE-ECCHHHHCCCCHHHHHHHH
T ss_conf 99899999999965999999997288888964-999999998578-7---9997436688-2185652576268999988
Q ss_pred ----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHHHHH-
Q ss_conf ----210368999999999974158869983344222112-46899999985138511000310-11122568888988-
Q gi|254780711|r 164 ----PEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIND-SLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLARNF- 236 (461)
Q Consensus 164 ----~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~-~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a~~F- 236 (461)
.+....++. +.+..+-.. .+ +-+-+.|.+.+= .=..+--.|.++.-.+--+|++| .++|.|...+.+.+
T Consensus 106 gl~~~g~~~~e~~-~rv~~~l~~-~g--l~~~~~~~p~~LSGGQrQRvaIAraL~~~P~iLilDEPTs~LD~~~~~~i~~ 181 (279)
T PRK13635 106 GLENIGVPREEMV-ERVDQALRQ-VG--MEDFLNREPHRLSGGQKQRVAIAGVLALQPDILILDEATSMLDPQGRREVLE 181 (279)
T ss_pred HHHHCCCCHHHHH-HHHHHHHHH-CC--CHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 9987799999999-999999987-79--9788617934399999999999999970999899738745489899999999
Q ss_pred -----HHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCC-CHHHHHHHHHCCCCHHHHHHHH
Q ss_conf -----763584407764115766330367778884787302615867232---1001-3688998773586278899987
Q gi|254780711|r 237 -----DKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENF-FPDRIANRILGMGDVVSLVEKA 307 (461)
Q Consensus 237 -----~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F-~p~~~~~riLGmgD~~~l~e~~ 307 (461)
++.-++|-+++|- | ++.+.. .--|.++--|+-+.+ =|.| +|+.+...=|--..+..|.+..
T Consensus 182 ~l~~L~~~~g~TvI~itH-d--------l~~~~~-aDRiivm~~G~Iv~~Gtp~elf~~~~~l~~~~l~~P~~~~l~~~l 251 (279)
T PRK13635 182 TVRQLKEQKGITVLSITH-D--------LDEAAQ-ADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGLDVPFSVKLKELL 251 (279)
T ss_pred HHHHHHHCCCCEEEEEEE-C--------HHHHHC-CCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999999837989999976-7--------899963-998999989999998699999779889997799999499999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 4211267899888653104637999999999985
Q gi|254780711|r 308 ARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQ 341 (461)
Q Consensus 308 ~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~ 341 (461)
+.. --.+....+|.+++.+.+.++.
T Consensus 252 ~~~---------g~~~~~~~~t~~~~~~~l~~~~ 276 (279)
T PRK13635 252 KRN---------GILLPNTHLTMESLVDELWTLH 276 (279)
T ss_pred HHC---------CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 975---------9999988889999999999874
No 340
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.11 E-value=0.045 Score=36.02 Aligned_cols=197 Identities=14% Similarity=0.152 Sum_probs=89.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-----------
Q ss_conf 884189962344333468899999999861489507820542210047799998510347422233210-----------
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ----------- 166 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~----------- 166 (461)
.+-.++.++|.|||||||.+-=|+-.+.-..| +|.+-..|......-..++.+.+.+|+-| .....+
T Consensus 31 ~~Ge~~aiiG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~iG~vf-Q~p~~ql~~~tV~eev~ 108 (280)
T PRK13649 31 LDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTG-IVSVDDTDITSHSKNKEIKSIRKKVGLVF-QFPESQLFEETVLKDVA 108 (280)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCCHHHHHHHHHHEEEEE-ECCCCCCCCCHHHHHHH
T ss_conf 79989999959998699999999669998860-89999999877782013999987646997-46521236030999998
Q ss_pred --------HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCH-HCCHHHHHH----
Q ss_conf --------3689999999999741588699833442221124-68999999851385110003101-112256888----
Q gi|254780711|r 167 --------SPEKIAIRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADA-LTGQDAVHL---- 232 (461)
Q Consensus 167 --------dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da-~~Gq~a~~~---- 232 (461)
.+.++-..+.+.+..-+.+- +-..|++.+=. =..+--.|..+.--+--+|++|= ++|.|....
T Consensus 109 fg~~~~g~~~~e~~~~v~~~l~~~gL~e---~~~~r~p~~LSGGqkqRvaiA~aL~~~P~iLllDEPTsgLDp~~~~~i~ 185 (280)
T PRK13649 109 FGPQNFGVSPEEAEALAREKLALVGISE---NLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM 185 (280)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCH---HHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 6898869999999999999998769974---6654290009999999999999997499999984875548999999999
Q ss_pred --HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCCC-HHHHHHHHHCCCCHHHHHHH
Q ss_conf --8988763584407764115766330367778884787302615867232---10013-68899877358627889998
Q gi|254780711|r 233 --ARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENFF-PDRIANRILGMGDVVSLVEK 306 (461)
Q Consensus 233 --a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F~-p~~~~~riLGmgD~~~l~e~ 306 (461)
.+..++. +.|=+++|- | +..+...---|..+--|+-+.+ -|.|. |+..-..=|+...+..+.++
T Consensus 186 ~ll~~l~~~-G~Tii~vTH-d--------l~~v~~~aDrv~vl~~G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~~~~~ 255 (280)
T PRK13649 186 TIFKKLHQS-GMTIVLVTH-L--------MDDVANYADFVYVLEKGKIVLSGKPKDIFQQVSFLEKKQLGVPKITKFAQR 255 (280)
T ss_pred HHHHHHHHC-CCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHH
T ss_conf 999999863-999999875-8--------999999799999998999999878999975989998779999919999999
Q ss_pred HHH
Q ss_conf 742
Q gi|254780711|r 307 AAR 309 (461)
Q Consensus 307 ~~~ 309 (461)
.++
T Consensus 256 L~~ 258 (280)
T PRK13649 256 LVD 258 (280)
T ss_pred HHH
T ss_conf 997
No 341
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.11 E-value=0.0017 Score=46.95 Aligned_cols=173 Identities=16% Similarity=0.198 Sum_probs=83.5
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC-------CCCCCC
Q ss_conf 1000258841899623443334688999999998614895078205422100477999985103474-------222332
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD-------TLEVIP 164 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~-------~~~~~~ 164 (461)
++.+.-.+-.++.|+|+||+|||||+-=|--.+.-..| +|.+..-|-|| +=+.|-..++.- .| .-+
T Consensus 42 disf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G-~v~V~G~~Pf~-----~~~~~~~~~~~v~gqk~ql~W-dlp 114 (325)
T COG4586 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG-KVRVNGKDPFR-----RREEYLRSIGLVMGQKLQLWW-DLP 114 (325)
T ss_pred EEEEECCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCC-EEEECCCCCCH-----HHHHHHHHHHHHHHHHHEEEE-ECH
T ss_conf 11453489868988758888603339897386036887-58745868523-----379999887887632220256-230
Q ss_pred CCHHHHHHH-----------HHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHH
Q ss_conf 103689999-----------99999974-158869983344222112468999999851385110003101112256888
Q gi|254780711|r 165 EQSPEKIAI-----------RATQSARD-GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHL 232 (461)
Q Consensus 165 ~~dp~~i~~-----------~a~~~a~~-~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~ 232 (461)
-.|...|.+ +-++.+.. -..+-.|=+-.-|+..-+.+--|| ......|-+++|.-.-++|-|...+
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeL--aaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAEL--AAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH--HHHHCCCCCEEEECCCCCCCCHHHH
T ss_conf 25469999999719889999999889998632456401356536057889999--9985689838974487457514389
Q ss_pred H--HHHHHHCC---CCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC
Q ss_conf 8--98876358---4407764115766330367778884787302615867232
Q gi|254780711|r 233 A--RNFDKIVD---LTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND 281 (461)
Q Consensus 233 a--~~F~~~~~---i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d 281 (461)
+ +.|-+..+ =..|.+|--|= +. ....---|.-|-.|+-++|
T Consensus 193 ~~ir~Flke~n~~~~aTVllTTH~~----~d----i~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 193 ANIREFLKEYNEERQATVLLTTHIF----DD----IATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred HHHHHHHHHHHHHHCCEEEEEECCH----HH----HHHHHHHEEEEECCCEEEC
T ss_conf 9999999998775373699984112----13----8886343699607828645
No 342
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.11 E-value=0.039 Score=36.48 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999999871877421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r 76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI 155 (461)
Q Consensus 76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~ 155 (461)
.-+++++.+.|.....+.. ....+--|.++|=.-|||.|-+-.|. . +.+ ++|+ |. ||
T Consensus 149 ~~L~~~i~~~l~~~~~~~~-~~~~~iriaivGrPNvGKSTl~N~ll----~-~~r--~ivs-~~--~G------------ 205 (429)
T TIGR03594 149 GDLLDAILELLPEEEEEEE-EEDGPIKIAIIGRPNVGKSTLVNALL----G-EER--VIVS-DI--AG------------ 205 (429)
T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCCEEEEEECCCCCCHHHHHHHHH----H-HHH--HHCC-CC--CC------------
T ss_conf 9999999965886655543-45565269997488765467777765----4-333--2147-99--98------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-----HHHHHHHHHHHHHCCCCCCCCCCCHHCC---H
Q ss_conf 4742223321036899999999997415886998334422211-----2468999999851385110003101112---2
Q gi|254780711|r 156 QVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIN-----DSLMQEISEIKSLTNPHEILLVADALTG---Q 227 (461)
Q Consensus 156 ~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d-----~~lm~El~~i~~~~~p~e~~lV~da~~G---q 227 (461)
. -.|++... +..++..+.+|||||-.... -+.+.-.+.+...-..|-++||+||.-| |
T Consensus 206 -t-------TrD~i~~~------~~~~~~~~~~iDTaGirkk~k~~~~~e~~s~~~t~~~i~~~dvvil~iD~~~~~~~q 271 (429)
T TIGR03594 206 -T-------TRDSIDIP------FERNGKKYLLIDTAGIRRKGKVTEGIEKYSVLRTLKAIERADVVLLVLDATEGITEQ 271 (429)
T ss_pred -C-------CCCCEEEE------EEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHH
T ss_conf -6-------31026879------999990899998988763664230477999999999987447799999766588488
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH--------HHHHHHHCCCHHHEECCC
Q ss_conf 56888898876358440776411576633036--------777888478730261586
Q gi|254780711|r 228 DAVHLARNFDKIVDLTGIILTRMDGDGRGGAA--------LSMRTVTGKPIKAIGTGE 277 (461)
Q Consensus 228 ~a~~~a~~F~~~~~i~giIlTKlD~~akgG~a--------ls~~~~~~~PI~fig~GE 277 (461)
|. ..|..-.+.----=+++-|.|--..--.. -.......+||.|++.=.
T Consensus 272 D~-~i~~~i~~~~k~~ii~~NK~Dli~~~~~~~~~~~~i~~~l~~~~~~pI~fiSA~~ 328 (429)
T TIGR03594 272 DL-RIAGLALEAGKALIIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALT 328 (429)
T ss_pred HH-HHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 89-9999898739976999972230379999999999999856236898689973457
No 343
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=96.10 E-value=0.0049 Score=43.36 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=29.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 89962344333468899999999861489507820542
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
+|.++|..||||||.+-+|+..|.. .+.++..++.|.
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~-~~~~~~~~~~d~ 37 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGR-EGVPAAGIEGDS 37 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCCCCCEE
T ss_conf 9899899857199999999999660-587764124317
No 344
>KOG0920 consensus
Probab=96.10 E-value=0.063 Score=34.91 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=86.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC----CCC-CCCCCCC-----HHH
Q ss_conf 418996234433346889999999986148950782054221004779999851034----742-2233210-----368
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ----VDT-LEVIPEQ-----SPE 169 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~----v~~-~~~~~~~-----dp~ 169 (461)
-.|++..|=+|+||||-+-..-.-..-..+..+-++++--.|++|+.=-+-.|..-+ -++ |...-++ ...
T Consensus 188 ~qVvvIsGeTGcGKtTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L 267 (924)
T KOG0920 188 NQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRSRETRL 267 (924)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEE
T ss_conf 96699957889871224669999999862899738866775177899999998875466687136898620136775168
Q ss_pred -----HHHHHHHHH-HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC
Q ss_conf -----999999999-974158869983344222112468999999851385110003101112256888898876358
Q gi|254780711|r 170 -----KIAIRATQS-ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD 241 (461)
Q Consensus 170 -----~i~~~a~~~-a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~ 241 (461)
-|..+-+.. ....++-.||+|+.---+.+.+.+--+.+..-.-+|+-.+..+.||.- |+.|.++++
T Consensus 268 ~fcTtGvLLr~L~~~~~l~~~thiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~d------ae~fs~YF~ 339 (924)
T KOG0920 268 LFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLD------AELFSDYFG 339 (924)
T ss_pred EEECHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECC------HHHHHHHHC
T ss_conf 984068999875468621458665442279716775217999998862288856998621126------288898718
No 345
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.09 E-value=0.044 Score=36.12 Aligned_cols=32 Identities=3% Similarity=0.109 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q ss_conf 84113357899972326-679899999999999
Q gi|254780711|r 390 NPSIIKHSRKKRIAAGS-GTNAAKINKLLKLHR 421 (461)
Q Consensus 390 ~P~ll~~SR~~RIA~GS-G~~v~eVn~Llk~f~ 421 (461)
+|.|+++|=+.-|+-|. ..+.+|+.+.+++-.
T Consensus 423 ~~~LF~~TI~eNi~~g~~~atdee~~~al~~a~ 455 (575)
T PRK11160 423 RVHLFSGTLRDNLLLAAPNATDEALIEVLQQVG 455 (575)
T ss_pred CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 760258867899872589878999999997537
No 346
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.09 E-value=0.092 Score=33.65 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 189962344333468899999999861489507820542
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
..+.+||++||||||-+-=|+.+|.-..|. +.+-..|.
T Consensus 369 ~~vaiVG~SGsGKSTL~~LL~gly~p~~G~-I~idg~di 406 (581)
T PRK11176 369 KTVALVGRSGSGKSTIANLLTRFYDIDEGE-ILLDGHDL 406 (581)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHCCCCCCE-EEECCEEH
T ss_conf 443122899986789999998536678874-87898851
No 347
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.09 E-value=0.055 Score=35.39 Aligned_cols=49 Identities=27% Similarity=0.259 Sum_probs=34.2
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 00025884189962344333468899999999861489507820542210
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP 142 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~ 142 (461)
+.+.-.+-.++-++|+|||||||++-=|+-.++-..| .|.+-..|....
T Consensus 24 vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~~G-~i~i~G~d~~~~ 72 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG-FATVDGFDVVKE 72 (218)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCC
T ss_conf 2789859829999999998499999999779778974-899999998869
No 348
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.06 Score=35.09 Aligned_cols=191 Identities=13% Similarity=0.090 Sum_probs=84.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-------CC----------
Q ss_conf 8418996234433346889999999986148950782054221004779999851034742-------22----------
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-------LE---------- 161 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-------~~---------- 161 (461)
+-.++.++|+|||||||.+-=|+..++-..| +|.+-..|+.+.. ..++ ...++.-+ |.
T Consensus 30 ~Ge~~aiiG~NGsGKSTLl~~l~Gl~~p~~G-~I~i~G~~i~~~~-~~~l---r~~iG~vfQ~p~~ql~~~tV~e~v~fg 104 (273)
T PRK13647 30 EGSKTAILGPNGAGKSTLLLHLNGIYTAQRG-RVKVMGKVVNEEN-IRWI---RKKVGLVFQDPDDQLFSSTVWDDVAFG 104 (273)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCC-HHHH---HHHCEEEECCCHHHHCCCHHHHHHHHH
T ss_conf 9989999999997599999999669888861-9999999999689-8999---875248810702430524199999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHH-----
Q ss_conf -332103689999999999741588699833442221124-6899999985138511000310-11122568888-----
Q gi|254780711|r 162 -VIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLA----- 233 (461)
Q Consensus 162 -~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a----- 233 (461)
...+-++.++..+ ++.+-+ ..+ |-|-+.|...+=. =..+.-.|..++-.+--+|++| .+.|.|.....
T Consensus 105 ~~~~g~~~~e~~~r-v~~~L~-~~~--l~~~~~~~p~~LSGGqkqRvaiA~aL~~~P~lliLDEPtagLDp~~~~~l~~~ 180 (273)
T PRK13647 105 PQNLELDKKEILRR-VEEALK-AVD--MWDLREKAPYHLSYGQKKRVAIAGVLAMEPDIIVLDEPMAYLDPRGKEELTAI 180 (273)
T ss_pred HHHCCCCHHHHHHH-HHHHHH-HCC--CHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 98859999999999-999998-779--58766479333999899999999999819999999797657999999999999
Q ss_pred -HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf -9887635844077641157663303677788847873026158672321---00136889987735862788999874
Q gi|254780711|r 234 -RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENFFPDRIANRILGMGDVVSLVEKAA 308 (461)
Q Consensus 234 -~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F~p~~~~~riLGmgD~~~l~e~~~ 308 (461)
+..++. +.|=+++| -| +..+...---|.++.-|+-+.|= +.++++.+-..=|....+..+.+..+
T Consensus 181 l~~L~~~-G~Tvi~vt-Hd--------l~~~~~~aDrvivl~~G~Iv~~Gtp~~~~~~~~l~~~gl~~P~~~~~~~~l~ 249 (273)
T PRK13647 181 LNRLNNE-GKTVIVAT-HD--------VDLALEWADQVVVLNAGRVVAQGDKSILTDRQLLEEAGLKAPLLVQIFEDFE 249 (273)
T ss_pred HHHHHHC-CCEEEEEE-CC--------HHHHHHHCCEEEEEECCEEEEECCHHHHCCHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 9999848-99999994-17--------8999996999999989999998294793999999986999987999999988
No 349
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.08 E-value=0.06 Score=35.06 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 0025884189962344333468899999999861489507820542210
Q gi|254780711|r 94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP 142 (461)
Q Consensus 94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~ 142 (461)
++.-.+-..+.++|++||||||.+-=|+..+.-..| +|.+-..|....
T Consensus 22 ~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G-~i~i~g~~i~~~ 69 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EITLDGVPVSDL 69 (178)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCC-EEEECCEEHHHH
T ss_conf 899869999999999987599999999861766788-699999988997
No 350
>PRK13974 thymidylate kinase; Provisional
Probab=96.08 E-value=0.083 Score=34.02 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 899623443334688999999998614
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLK 128 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~ 128 (461)
-|.|-|+-||||||-+.+|+.||...+
T Consensus 5 fIv~EGiDGsGKsTq~~~L~~~L~~~g 31 (212)
T PRK13974 5 FIVLEGIDGCGKTTQIDHLSKWLPSSG 31 (212)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999889999989999999999998658
No 351
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.05 E-value=0.024 Score=38.17 Aligned_cols=156 Identities=24% Similarity=0.313 Sum_probs=71.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC-----------CCCHHHHHHHHHHHCCCCCCCCCCC---
Q ss_conf 84189962344333468899999999861489507820542-----------2100477999985103474222332---
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV-----------HRPAAQEQLRYLGEQIQVDTLEVIP--- 164 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt-----------~R~aA~eQL~~~a~~~~v~~~~~~~--- 164 (461)
+|.+|+++||+|||||.-+-.||..+ ..-+|+||. =+|-.-||-.+-- .-+.++....
T Consensus 3 ~~~ii~i~GpTasGKs~la~~la~~~------~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~H--hli~~~~~~e~~s 74 (304)
T PRK00091 3 KPKLIVLVGPTASGKTALAIELAKRL------NGEIISVDSMQVYRGMDIGTAKPTAEELAGVPH--HLIDILDPTESYS 74 (304)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC------CCEEEEECHHHHHCCCCEEECCCCHHHHCCCCC--EEEEEECCCCCEE
T ss_conf 99779998988658999999999987------998994126887499986889999999818981--2434565887544
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH-----HHHHHH
Q ss_conf 103689999999999741588699833442221124689999998513851100031011122568888-----988763
Q gi|254780711|r 165 EQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA-----RNFDKI 239 (461)
Q Consensus 165 ~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a-----~~F~~~ 239 (461)
..+=..-|...++....++.-.||| -|-.-+=..|+.-+..+ |. .|..+-++..... ..+++.
T Consensus 75 v~~f~~~a~~~i~~i~~~~kiPIiV--GGTglYl~aLl~g~~~~-----p~-----~~~~ir~~l~~~~~~~g~~~l~~~ 142 (304)
T PRK00091 75 AADFQRDALAAIEDITARGKLPILV--GGTGLYFKALLEGLSFL-----PP-----ADPEVRAELEALAAEEGWEALHAE 142 (304)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEE--CCCHHHHHHHHCCCCCC-----CC-----CCHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 9999999999999999769987898--08389999997187778-----88-----898999999999997589999999
Q ss_pred -CCCCCEEEEECCC--CCCCCHHHHHHHHHCCCHHHEE
Q ss_conf -5844077641157--6633036777888478730261
Q gi|254780711|r 240 -VDLTGIILTRMDG--DGRGGAALSMRTVTGKPIKAIG 274 (461)
Q Consensus 240 -~~i~giIlTKlD~--~akgG~als~~~~~~~PI~fig 274 (461)
..+|-....++|. ..|-==||.+...||.|+...-
T Consensus 143 L~~~Dp~~a~~I~~nd~~Rl~RAlEv~~~tGk~~s~~~ 180 (304)
T PRK00091 143 LAEIDPVAAARIHPNDPQRIIRALEVYELTGKPLSELQ 180 (304)
T ss_pred HHHHCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98759999961598612679999999999799789985
No 352
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.05 E-value=0.065 Score=34.82 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=45.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-CHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221-00477999985103474-22233210368999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-PAAQEQLRYLGEQIQVD-TLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-~aA~eQL~~~a~~~~v~-~~~~~~~~dp~~i~~~a~~~ 178 (461)
..++|+|++|+|||..+--||.++-. ..++...+.+-.|- ..++ +.-++.| -|....+. -...+++
T Consensus 4 ~~~l~~GPsGvGKT~lAk~la~~l~~-~~~~~i~~dm~e~~~~~~v------~~l~g~~~gyvg~~~~---G~l~~~v-- 71 (168)
T pfam07724 4 GSFLFLGPTGVGKTELAKALAELLFG-DERALIRIDMSEYMEEHSV------SRLIGAPPGYVGYEEG---GQLTEAV-- 71 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEECCCCCCCHHHH------HHHCCCCCCCCCCCCC---CCHHHHH--
T ss_conf 79998898998999999999999679-8534488557565425699------9870589987262426---5078999--
Q ss_pred HHHCCCCEEEEECCCCCCCH
Q ss_conf 97415886998334422211
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHIN 198 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d 198 (461)
+++.+-||++|--..-|.+
T Consensus 72 -~~~p~~VillDEIeKa~~~ 90 (168)
T pfam07724 72 -RRKPYSIVLIDEIEKAHPG 90 (168)
T ss_pred -HHCCCCEEEEHHHHHHCHH
T ss_conf -8389848986577665899
No 353
>PRK00454 engB GTPase EngB; Reviewed
Probab=96.04 E-value=0.13 Score=32.48 Aligned_cols=146 Identities=17% Similarity=0.280 Sum_probs=72.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
...| .|.++|-.-+||+|-+-.|. +.+++++++ ++ ||-- . .+.+|..
T Consensus 22 ~~~p-~VaivGrpNvGKSTL~N~L~------g~k~~a~vs-~~--pgtT-------r--~i~~~~~-------------- 68 (196)
T PRK00454 22 DDGP-EIAFAGRSNVGKSSLINALT------NRKNLARTS-KT--PGRT-------Q--LINFFEV-------------- 68 (196)
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHH------CCCCEEEEE-CC--CCCE-------E--EEEEEEC--------------
T ss_conf 8896-89998489888999999986------897369974-78--8860-------7--9888761--------------
Q ss_pred HHHHHCCCCEEEEECCCC-----CCCHHHHHHHH-HHH-HHHCCCCCCCCCCCHHCC---HH--HHHHHHHHHHHCCCCC
Q ss_conf 999741588699833442-----22112468999-999-851385110003101112---25--6888898876358440
Q gi|254780711|r 177 QSARDGGYDAVILDTAGR-----NHINDSLMQEI-SEI-KSLTNPHEILLVADALTG---QD--AVHLARNFDKIVDLTG 244 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR-----~~~d~~lm~El-~~i-~~~~~p~e~~lV~da~~G---q~--a~~~a~~F~~~~~i~g 244 (461)
+..+++|||+|- .+...+.+.++ ... ....+-+-+++++||..| || ..++++.+. .+ -=
T Consensus 69 ------~~~~~lvDtpGyG~a~~~~~~~~~~~~~i~~yl~~~~~l~~villIDa~~g~~~~D~~i~~~l~~~~--~p-~i 139 (196)
T PRK00454 69 ------NDGLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLQKRENLKGVVLLIDSRHPLKELDLEMIEWLKEAG--IP-VL 139 (196)
T ss_pred ------CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CC-CE
T ss_conf ------8833899379974132778788899999999999623336389999716589888999999998627--78-59
Q ss_pred EEEEECCCCCCCCH---HHHHHHHH-----CCCHHHEE--CCCCCCCCCC
Q ss_conf 77641157663303---67778884-----78730261--5867232100
Q gi|254780711|r 245 IILTRMDGDGRGGA---ALSMRTVT-----GKPIKAIG--TGEKINDLEN 284 (461)
Q Consensus 245 iIlTKlD~~akgG~---als~~~~~-----~~PI~fig--~GE~~~dle~ 284 (461)
++++|.|--.+..- ...+.... ..||.+|+ +|+.+++|..
T Consensus 140 ivlNKiD~l~~~~~~~~~~~i~~~l~~~~~~~~ii~ISA~~g~GI~eL~~ 189 (196)
T PRK00454 140 IVLTKADKLKKGERKKLLKKVKKALARFAADPEVLLFSSLKKTGIDELRA 189 (196)
T ss_pred EEEECCHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 99987251697899999999999976125898289996999979899999
No 354
>PRK07429 phosphoribulokinase; Provisional
Probab=96.04 E-value=0.013 Score=40.09 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=49.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC----------------HH------HHHHHHH--H
Q ss_conf 5884189962344333468899999999861489507820542210----------------04------7799998--5
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP----------------AA------QEQLRYL--G 152 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~----------------aA------~eQL~~~--a 152 (461)
+.+|.+|-++|=.||||||.+-+|+..|- ...|.+++.|.|-- .| .+||+.+ +
T Consensus 5 ~~rP~IIGIAGgSGSGKTTv~r~I~~~fg---~~~VtvI~~DdYhk~dr~~r~~~~~t~lhP~And~dLl~e~L~~Lk~G 81 (331)
T PRK07429 5 PDRPVIIGVAGDSGCGKSTFLRRLADLFG---EELVTVICLDDYHSLDRKQRKEIGITALDPRANNFDLMYEQLKALKTG 81 (331)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHCC
T ss_conf 99998999857887789999999999838---887799947867778878898718987896400599999999999859
Q ss_pred HCCCCCCCCCCCCC
Q ss_conf 10347422233210
Q gi|254780711|r 153 EQIQVDTLEVIPEQ 166 (461)
Q Consensus 153 ~~~~v~~~~~~~~~ 166 (461)
+.+..|+|....+.
T Consensus 82 k~I~~PvYdh~tg~ 95 (331)
T PRK07429 82 QPILKPIYNHETGK 95 (331)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 97256523564787
No 355
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.058 Score=35.19 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=62.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC--CCCCC--CCCCCCHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103--47422--233210368999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI--QVDTL--EVIPEQSPEKIAIRA 175 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~--~v~~~--~~~~~~dp~~i~~~a 175 (461)
..-|.+=|+-||||||-+..|+.+|+. .|.+|.+..--+. .-.-+.++.+...- .+.-+ ..-...|-..-+.+-
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~-~g~~v~~trEP~~-~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~ 80 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEE-RGIKVVLTREPGG-TPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV 80 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 629999788889889999999999998-2980799868999-86999999997388667888999999999999999999
Q ss_pred HHHHHHCCCCEEEEEC---------CCCCCCHHHHHHHHHHHHH-HCCCCCCCC-CCCHH
Q ss_conf 9999741588699833---------4422211246899999985-138511000-31011
Q gi|254780711|r 176 TQSARDGGYDAVILDT---------AGRNHINDSLMQEISEIKS-LTNPHEILL-VADAL 224 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDT---------aGR~~~d~~lm~El~~i~~-~~~p~e~~l-V~da~ 224 (461)
+..+-.+ -++||.|- .+....+.+.+.++..+.. -..||-+++ =+|.-
T Consensus 81 i~pal~~-g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e 139 (208)
T COG0125 81 IKPALKE-GKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPE 139 (208)
T ss_pred HHHHHCC-CCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 7887628-9999987831378885353059998999999976547899988999948889
No 356
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=96.03 E-value=0.01 Score=40.95 Aligned_cols=198 Identities=22% Similarity=0.304 Sum_probs=124.6
Q ss_pred HHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98718774210002588418996234433346889999999986148950782054221004779999851034742223
Q gi|254780711|r 83 VEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV 162 (461)
Q Consensus 83 ~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~ 162 (461)
++.|-...+--.+.-+-|.=+|||||.|+||| -|.| ++ |-..+||||+.
T Consensus 75 VdFLK~P~kf~~LGaKIPKGVLLvGPPGTGKT--------LLAK------Av-----------------AGEA~VPFF~i 123 (505)
T TIGR01241 75 VDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKT--------LLAK------AV-----------------AGEAGVPFFSI 123 (505)
T ss_pred HHHCCCCHHHHHCCCCCCCCEEEECCCCCCHH--------HHHH------HH-----------------HCCCCCCCEEE
T ss_conf 42226963798727889871473178784246--------7887------52-----------------02588962474
Q ss_pred CCCCHHHH--------HHHHHHHHHHHCCCCEEEEE---CCCCCC--------CHH---HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 32103689--------99999999974158869983---344222--------112---468999999851385110003
Q gi|254780711|r 163 IPEQSPEK--------IAIRATQSARDGGYDAVILD---TAGRNH--------IND---SLMQEISEIKSLTNPHEILLV 220 (461)
Q Consensus 163 ~~~~dp~~--------i~~~a~~~a~~~~~D~iiiD---TaGR~~--------~d~---~lm~El~~i~~~~~p~e~~lV 220 (461)
+|||=++ =++|=.+.||++-=-+|+|| --||+- +|+ .|=|=|-++.-.- ..+=+.|
T Consensus 124 -SGSdFVEMFVGVGASRVRDLFeqAK~nAPCIIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~-~~~gvIv 201 (505)
T TIGR01241 124 -SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFG-TNTGVIV 201 (505)
T ss_pred -CCCCEEECCCCCCCEEHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCC-CCCCEEE
T ss_conf -07610111205640001445799997189705640100003335643667654135543323313317858-9885799
Q ss_pred CCHHCCHHHHHHH----HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 1011122568888----988763584407764115766330367778884787302615867232100136889987735
Q gi|254780711|r 221 ADALTGQDAVHLA----RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILG 296 (461)
Q Consensus 221 ~da~~Gq~a~~~a----~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLG 296 (461)
|=||.=-|.++-| =.|.-+ |.+.+=| -+|=-++=-+|.-++|.. +..|-+.+|.+==|
T Consensus 202 ~AATNRPDvLD~ALLRPGRFDRQ-----v~V~~PD--~~GR~~IL~VH~~~~kLa-----------~~vdL~~~Ar~TPG 263 (505)
T TIGR01241 202 IAATNRPDVLDPALLRPGRFDRQ-----VVVDLPD--IKGREEILKVHAKNKKLA-----------PDVDLKAVARRTPG 263 (505)
T ss_pred EEECCCCCCCCCCCCCCCCCCCE-----EECCCCC--HHHHHHHHHHHHCCCCCC-----------CCCCHHHHHHHCCC
T ss_conf 85048841165100687874451-----3458887--467899999985488997-----------02477999701568
Q ss_pred C--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 8--6278899987421126789988865310463799999999998
Q gi|254780711|r 297 M--GDVVSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQT 340 (461)
Q Consensus 297 m--gD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i 340 (461)
+ -|+.=|+. ||..++-|--+-.-+++||-+-+..+
T Consensus 264 fSGADLaNl~N---------EAALlAAR~n~~~i~~~~~eeA~Drv 300 (505)
T TIGR01241 264 FSGADLANLLN---------EAALLAARKNKTEITMNDIEEAVDRV 300 (505)
T ss_pred CCHHHHHHHHH---------HHHHHHHHCCCCEECHHHHHHHHHHH
T ss_conf 76788999999---------99999861798656288898787765
No 357
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.02 E-value=0.005 Score=43.30 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=32.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH
Q ss_conf 8996234433346889999999986148950782054221004779
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ 147 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ 147 (461)
.|+|+|+.||||+|-+..||.+| +. +-+.+.|.+|.+....
T Consensus 2 ~iillGpPGsGKgT~a~~l~~~~----~~-~hiStGdllR~~i~~~ 42 (225)
T PTZ00088 2 KIVLFGAPGVGKGTFAEILSKKE----KL-KHINMGNILRDEIKKE 42 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CC-EEECHHHHHHHHHHCC
T ss_conf 79998999998799999999987----99-0687899999999739
No 358
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.02 E-value=0.013 Score=40.23 Aligned_cols=88 Identities=23% Similarity=0.349 Sum_probs=54.3
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 89962344-33346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r 102 VIMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 102 vIllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
||.|+|.. |+||||.++-||..+.++.+++|+++-.|...--
T Consensus 1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------------------------------------
T ss_conf 9899728998668999999999999841993899965467799-------------------------------------
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHHHHHHHHHH
Q ss_conf 415886998334422211246899999985138511000310111--2256888898876
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAVHLARNFDK 238 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~~~a~~F~~ 238 (461)
|+|+||++... +..-+.-| -..|++++|..-.. =+++.+..+.|..
T Consensus 44 ----d~VVvD~~~~~--~~~~~~al------~~ad~i~lv~~~~lp~lrn~kr~l~~l~~ 91 (106)
T cd03111 44 ----DYVVVDLGRSL--DEVSLAAL------DQADRVFLVTQQDLPSIRNAKRLLELLRV 91 (106)
T ss_pred ----CEEEECCCCCC--CHHHHHHH------HHCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf ----78999186553--88999999------86797999806774899979999999998
No 359
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.02 E-value=0.079 Score=34.16 Aligned_cols=221 Identities=19% Similarity=0.157 Sum_probs=87.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ 177 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~ 177 (461)
.+-.++.++|+|||||||.+-=|+..+.-..+ ..+.+..|-...... .+..+.+++++= |..+..+=....+++-+.
T Consensus 32 ~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~~-~~G~i~~~g~~i~~~-~~~~lr~~vg~V-fQ~P~~q~~~~tV~e~ia 108 (283)
T PRK13640 32 PRGSWTALIGHNGSGKSTISKLINGLLLPDDN-PKSKITVDGITLTAK-TVWDIREKVGIV-FQNPDNQFVGATVGDDVA 108 (283)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-CEEEEEECCEECCCC-CHHHHHHCEEEE-EECCCCCCCCCCHHHHHH
T ss_conf 89999999999998799999999640378888-617999999999967-988996261899-868876188782999998
Q ss_pred HHHHC-CC--------------CEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHHH------
Q ss_conf 99741-58--------------8699833442221124-6899999985138511000310-111225688889------
Q gi|254780711|r 178 SARDG-GY--------------DAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLAR------ 234 (461)
Q Consensus 178 ~a~~~-~~--------------D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a~------ 234 (461)
+...+ +. .+=+-|-+.|.+.+=. =..+--.|..+.-..--+|++| .+.|.|...+.+
T Consensus 109 fgl~n~~~~~~e~~~~v~~~l~~vgl~~~~~~~p~~LSGGqkQRvaiA~aLa~~P~iLllDEPTs~LD~~~~~~i~~~l~ 188 (283)
T PRK13640 109 FGLENRGVPRPEMIKIVADVLSDVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPQIIILDESTSMLDPAGKEQILKLIR 188 (283)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 45753799999999999999987799777647922299999999999999971999999768745489899999999999
Q ss_pred HHHHHCCCCCEEEEE-CCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCCCHHHHHHHH-HCCCCHHHHHHHHHH
Q ss_conf 887635844077641-15766330367778884787302615867232---1001368899877-358627889998742
Q gi|254780711|r 235 NFDKIVDLTGIILTR-MDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENFFPDRIANRI-LGMGDVVSLVEKAAR 309 (461)
Q Consensus 235 ~F~~~~~i~giIlTK-lD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F~p~~~~~ri-LGmgD~~~l~e~~~~ 309 (461)
..++.-++|=+++|- +| .| . .---|.++--|.-+.+ =|.|.-..+..+. |...-+..|..+.++
T Consensus 189 ~l~~e~g~TvI~itHd~~-~a--------~--~aDrv~vm~~G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~l~~~L~~ 257 (283)
T PRK13640 189 KLMKDNNLTIISITHDID-EA--------A--GADQVLVLDDGKLLAQGSPVEIFPKVELLKRIGLDIPFVYKLKLKLKE 257 (283)
T ss_pred HHHHCCCCEEEEEEECHH-HH--------H--HCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 999706989999978878-99--------7--099899999999999777899857999999779999969999999997
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 11267899888653104637999999999985
Q gi|254780711|r 310 NLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQ 341 (461)
Q Consensus 310 ~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~ 341 (461)
. --.+-..-.|.+.+.+++.+++
T Consensus 258 ~---------g~~~~~~~~t~eel~~~l~~~~ 280 (283)
T PRK13640 258 K---------GISVPQEINTEEKLVQYLCQLN 280 (283)
T ss_pred C---------CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 4---------9999988789999999999875
No 360
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=96.01 E-value=0.14 Score=32.33 Aligned_cols=88 Identities=20% Similarity=0.202 Sum_probs=41.7
Q ss_pred EEEECCCCCCHHHHHHHHH-HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9962344333468899999-99986148950782054221004779999851---0347422233210368999999999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIA-YHLKTLKKKKILMASLDVHRPAAQEQLRYLGE---QIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA-~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~---~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
+++++++|+|||.+..-.+ ..+....+....++-+. .|+=+.+|.+.+-+ ..++.+.....+.++..- +..+
T Consensus 17 ~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~P-t~aL~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~-- 92 (167)
T pfam00270 17 VLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAP-TRELAEQIYEELKKLGKYLGLKVALLYGGDSPKEQ-LRKL-- 92 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH-HHHH--
T ss_conf 8998899975899999999999874778987999906-08888899988643210267640464178617889-8764--
Q ss_pred HHHCCCCEEEEECCCCCCC
Q ss_conf 9741588699833442221
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHI 197 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~ 197 (461)
.+..| |+|=|.+++..
T Consensus 93 --~~~~~-Ilv~Tp~~l~~ 108 (167)
T pfam00270 93 --KKGPD-ILVGTPGRLLD 108 (167)
T ss_pred --CCCCC-EEEECHHHHHH
T ss_conf --05770-79947899999
No 361
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=96.01 E-value=0.036 Score=36.77 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=72.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
+.-+|.+||-.-+||.|---+|. +++.++|+ |+ -|+.- |... ..
T Consensus 37 ~lPiVaIvGRPNVGKStLFNrL~-------~~~~AIV~-d~---------------pGvTR-------Dr~~------~~ 80 (474)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRIL-------GRREAVVE-DI---------------PGVTR-------DRVS------YD 80 (474)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH-------CCCEEEEC-CC---------------CCCCC-------CCEE------EE
T ss_conf 99989998999988899999986-------88638805-98---------------99880-------8636------89
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHH-CCCCCCCCCCCHHCCHH--HHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 97415886998334422211246899999-9851-38511000310111225--68888988763584407764115766
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISE-IKSL-TNPHEILLVADALTGQD--AVHLARNFDKIVDLTGIILTRMDGDG 254 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~-i~~~-~~p~e~~lV~da~~Gq~--a~~~a~~F~~~~~i~giIlTKlD~~a 254 (461)
+.-.+..+.+|||+|-......+.+.+.. +..+ -..|-++||+||..|-. -..+|+...+.-.--=+++.|+|+..
T Consensus 81 ~~~~~~~f~lvDTgG~~~~~~~~~~~i~~q~~~ai~eaD~IlfVvD~~~glt~~D~eia~~LRk~~kpviLVvNK~D~~~ 160 (474)
T PRK03003 81 AEWNGRRFVVQDTGGWEPDAKGLQALVAEQAEVAMRTADAVLFVVDATVGATATDEAVARLLRRSGKPVFLAANKVDSER 160 (474)
T ss_pred EEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99999289999799999974789999999999999869999999968989887899999998753997799867556621
Q ss_pred CCCHHHHHHHHHC
Q ss_conf 3303677788847
Q gi|254780711|r 255 RGGAALSMRTVTG 267 (461)
Q Consensus 255 kgG~als~~~~~~ 267 (461)
. -...+-.+..|
T Consensus 161 ~-~~~~~efy~LG 172 (474)
T PRK03003 161 G-EADAAALWSLG 172 (474)
T ss_pred H-HHHHHHHHHHC
T ss_conf 0-23489999757
No 362
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=96.01 E-value=0.18 Score=31.44 Aligned_cols=200 Identities=16% Similarity=0.218 Sum_probs=97.1
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----CCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 9999987187742100025884189962344333468899999999861-----48950782054221004779999851
Q gi|254780711|r 79 HDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTL-----KKKKILMASLDVHRPAAQEQLRYLGE 153 (461)
Q Consensus 79 ~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~-----~~~kV~lv~~Dt~R~aA~eQL~~~a~ 153 (461)
.+.|..+|... ...++..+|+||..|.|||+-+-|.+..+-.. ....|+.+-+ |..-++-+-|+.
T Consensus 46 L~~Le~Ll~~P------~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~----P~~p~~~~lY~~ 115 (302)
T pfam05621 46 LNRLEALYAWP------NKQRMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQM----PSEPSVIRFYVA 115 (302)
T ss_pred HHHHHHHHHCC------CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC----CCCCCHHHHHHH
T ss_conf 99999998468------64688755887079887899999999967998786667021899976----999886899999
Q ss_pred ---CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC-----CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf ---03474222332103689999999999741588699833-----4422211246899999985138511000310111
Q gi|254780711|r 154 ---QIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDT-----AGRNHINDSLMQEISEIKSLTNPHEILLVADALT 225 (461)
Q Consensus 154 ---~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDT-----aGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~ 225 (461)
.+++|+- ......+....++..++.-+.-++|||- +|....-...+.-|+.+.+..+ +-+|.-++
T Consensus 116 IL~~l~aP~~---~~~~~~~~~~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel~---IpiV~vGt- 188 (302)
T pfam05621 116 LLAAMGAPLR---PRPRLPEMEQLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELR---IPLVGVGT- 188 (302)
T ss_pred HHHHHCCCCC---CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCC---CCEEEECC-
T ss_conf 9998378778---8877899999999999974987899854365604868899999999999863658---78699531-
Q ss_pred CHHHHH---HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC-----
Q ss_conf 225688---889887635844077641157663303677788847873026158672321001368899877358-----
Q gi|254780711|r 226 GQDAVH---LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM----- 297 (461)
Q Consensus 226 Gq~a~~---~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm----- 297 (461)
.+|++ .-..+.+. +.-+.+.+---+.-....|.. .+-..|.+ +-.+| .-..++.+|+-+
T Consensus 189 -~eA~~ai~tD~QlasR--F~~~~Lp~W~~d~ef~~LL~s-fe~~LPL~------~~S~L---~~~~~a~~I~~~SeG~i 255 (302)
T pfam05621 189 -RDAYLAIRSDDQLENR--FEPMLLPPWEANDDCCSLLAS-FAASLPLR------RPSPI---ATLDMARYLLTRSEGTI 255 (302)
T ss_pred -HHHHHHHHCCHHHHHH--CCCCCCCCCCCCCHHHHHHHH-HHHHCCCC------CCCCC---CCHHHHHHHHHHCCCCH
T ss_conf -9999997068888850--586116888898089999999-99868887------77688---88999999999859928
Q ss_pred CCHHHHHHHHH
Q ss_conf 62788999874
Q gi|254780711|r 298 GDVVSLVEKAA 308 (461)
Q Consensus 298 gD~~~l~e~~~ 308 (461)
|++..|+..+.
T Consensus 256 Gei~~Ll~~aA 266 (302)
T pfam05621 256 GELAHLLMAAA 266 (302)
T ss_pred HHHHHHHHHHH
T ss_conf 79999999999
No 363
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.00 E-value=0.18 Score=31.39 Aligned_cols=70 Identities=27% Similarity=0.237 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHH
Q ss_conf 899999999999998718774210002588418996234433346889999999986148-9507820542210047799
Q gi|254780711|r 70 PGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKILMASLDVHRPAAQEQL 148 (461)
Q Consensus 70 ~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~lv~~Dt~R~aA~eQL 148 (461)
+..+...+|...+.+++..... +....=++=--||||||-|..++|.++....+ .+|.+|+ | |--=-+|+
T Consensus 249 ~~~~q~~a~~~~i~~~~~~~~~------~~~~~G~IWHtqGSGKTltm~~~A~~l~~~~~~~~v~fvv-D--R~dLd~Q~ 319 (962)
T COG0610 249 QRYAQYRAVQKAIKRILKASNP------GDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVV-D--RKDLDDQT 319 (962)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC------CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-C--HHHHHHHH
T ss_conf 7889999999999999971267------8777238984069837899999999998365999699996-7--28899999
No 364
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.00 E-value=0.015 Score=39.63 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=61.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHH-----HHH
Q ss_conf 9962344333468899999999861489507820542210047799998510347422--233210368999-----999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL--EVIPEQSPEKIA-----IRA 175 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~--~~~~~~dp~~i~-----~~a 175 (461)
|+.+|---+||||.++.|.+.. +. + .....++++..+...+-+-+ +-.....+.+-- .-+
T Consensus 2 ~vv~GHVD~GKSTL~g~LL~~~---g~--i--------~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~ 68 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDS---KS--I--------FEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVA 68 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHC---CC--C--------CHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEE
T ss_conf 6999748898889999999982---99--6--------789999999887541676300034346868788269794105
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH---HHHHHCCCCCEE--EEEC
Q ss_conf 99997415886998334422211246899999985138511000310111225688889---887635844077--6411
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR---NFDKIVDLTGII--LTRM 250 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~---~F~~~~~i~giI--lTKl 250 (461)
..++..+++.+.||||+|--.. +.++ +..+...|-.+||+||.-|-.. |.+ ..-..+++..+| +.|+
T Consensus 69 ~~~f~~~~~~~~iiDtPGH~df----i~nm--i~gas~aD~ailVVda~~G~~~--QT~eh~~~~~~lgi~~iIv~vNKm 140 (208)
T cd04166 69 YRYFSTPKRKFIIADTPGHEQY----TRNM--VTGASTADLAILLVDARKGVLE--QTRRHSYILSLLGIRHVVVAVNKM 140 (208)
T ss_pred EEEEEECCCEEEEEECCCCHHH----HHHH--HHHHHHCCEEEEEEECCCCCCH--HHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 8999819926999878962889----9999--9998637747999975888727--899999999974998399999885
Q ss_pred CC
Q ss_conf 57
Q gi|254780711|r 251 DG 252 (461)
Q Consensus 251 D~ 252 (461)
|-
T Consensus 141 D~ 142 (208)
T cd04166 141 DL 142 (208)
T ss_pred CC
T ss_conf 76
No 365
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.98 E-value=0.013 Score=40.17 Aligned_cols=49 Identities=29% Similarity=0.344 Sum_probs=42.1
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH
Q ss_conf 02588418996234433346889999999986148950782054221004
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA 144 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA 144 (461)
....+|.||-|.||-||||||-+..|+..|.. .|+.+-+.-.|.-|-+=
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~-~G~~~y~LDGDnvR~gL 66 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFA-KGYHVYLLDGDNVRHGL 66 (197)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCHHHHHCC
T ss_conf 72799859996468888787999999999997-59758985574676500
No 366
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.014 Score=39.81 Aligned_cols=227 Identities=15% Similarity=0.155 Sum_probs=95.3
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 00025884189962344333468899999999861489507820542210047799998510347422233210368999
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA 172 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~ 172 (461)
+...++ ..+.++|+|||||||.+-=++..++-..|. |.+-..+.........++.+.+++++-| ..+..+=....+
T Consensus 27 l~I~~G--e~vaiiG~nGsGKSTLl~~l~Gll~p~~G~-V~~~~~~i~~~~~~~~~~~~~~~vG~Vf-Q~p~~ql~~~tV 102 (288)
T PRK13643 27 LEVKKG--SYTALIGHTGSGKSTLLQHLNGLLQPTEGK-VTVGDIVVSSTSKQKEIKPVRKKVGVVF-QFPESQLFEETV 102 (288)
T ss_pred EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHHHHHCEEEEE-ECCCCCCCHHHH
T ss_conf 798599--899999999947999999997488888856-9999998568773544798775179999-777320243369
Q ss_pred HHHHHHHHH--------------CCCCEE-EEE-CCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHHHHHHH
Q ss_conf 999999974--------------158869-983-3442221--12468999999851385110003101-1122568888
Q gi|254780711|r 173 IRATQSARD--------------GGYDAV-ILD-TAGRNHI--NDSLMQEISEIKSLTNPHEILLVADA-LTGQDAVHLA 233 (461)
Q Consensus 173 ~~a~~~a~~--------------~~~D~i-iiD-TaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~a~~~a 233 (461)
.+-+.+... +..+.+ +-| -..|.+. ... ..+.-.|..+.--+--+|++|= +.|.|.....
T Consensus 103 ~e~vafg~~n~g~~~~e~~~~v~~~l~~vgl~d~~~~r~p~~LSGG-qkqRvaiA~aLa~~P~vLlLDEPTs~LDp~~~~ 181 (288)
T PRK13643 103 LKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGG-QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI 181 (288)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 9999989998699989999999999997599366752797639999-999999999997499999995885558999999
Q ss_pred ------HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCCC-HHHHHHHHHCCCCHHHH
Q ss_conf ------9887635844077641157663303677788847873026158672321---0013-68899877358627889
Q gi|254780711|r 234 ------RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENFF-PDRIANRILGMGDVVSL 303 (461)
Q Consensus 234 ------~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F~-p~~~~~riLGmgD~~~l 303 (461)
+..++ -+.|=+++|- | +..+...---|..+--|+-+.|= |.|. |+.+...=|+...+..|
T Consensus 182 ~i~~ll~~l~~-~G~TiI~vtH-d--------~~~v~~~adrvivl~~G~Iv~~Gtp~evf~~~~~l~~~~l~~P~~~~l 251 (288)
T PRK13643 182 EMMQLFESIHQ-SGQTVVLVTH-L--------MDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHF 251 (288)
T ss_pred HHHHHHHHHHH-CCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHH
T ss_conf 99999999995-3999999860-8--------999999799999998999999878899866999999769999849999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 998742112678998886531046379999999999851
Q gi|254780711|r 304 VEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQK 342 (461)
Q Consensus 304 ~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~k 342 (461)
.++.+..= . -....-.-|.+++.+.+.++..
T Consensus 252 ~~~L~~~g------~--~~~~~~p~t~~e~~~~l~~l~~ 282 (288)
T PRK13643 252 ADQLQKTG------A--VTFEKLPITRAELVTLLTSLSV 282 (288)
T ss_pred HHHHHHCC------C--CCCCCCCCCHHHHHHHHHHHCC
T ss_conf 99999769------9--8867798989999999996142
No 367
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.96 E-value=0.055 Score=35.34 Aligned_cols=198 Identities=23% Similarity=0.304 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6999999999999983031112699899999999999998718774--21000258841899623443334688999999
Q gi|254780711|r 45 LEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKES--IELDLNAPSPLVIMLVGLQGSGKTTTTAKIAY 122 (461)
Q Consensus 45 ~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~--~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~ 122 (461)
++.-+++.+.+-+-..|++ ..+..+--.||+...++..... .+... .++-|||+||+|||||--+--||.
T Consensus 60 lp~P~eI~~~LD~yVIGQ~-----~AKk~lsVAvyNHykRi~~~~~~~~~vei---~KsNILliGPTG~GKTlla~tLAk 131 (411)
T PRK05342 60 LPTPKEIKAHLDQYVIGQE-----RAKKVLSVAVYNHYKRLRQNGSKSDDVEL---QKSNILLIGPTGSGKTLLAQTLAR 131 (411)
T ss_pred CCCHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 9997999998621402848-----88899999999999998602133566521---345389989999778899999999
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCH
Q ss_conf 99861489507820542210047799998510347422233210368999999999974----15886998334422211
Q gi|254780711|r 123 HLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD----GGYDAVILDTAGRNHIN 198 (461)
Q Consensus 123 ~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~----~~~D~iiiDTaGR~~~d 198 (461)
.+ +-+-.++-|-+|--| .+.|.|.-.+..+-++.|.. -..-+|.||
T Consensus 132 ~l----~vPF~iaDAT~lTEa------------------GYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~ID-------- 181 (411)
T PRK05342 132 IL----NVPFAIADATTLTEA------------------GYVGEDVENILLKLLQAADYDVEKAQRGIVYID-------- 181 (411)
T ss_pred HH----CCCEEEEEECEECCC------------------CCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEE--------
T ss_conf 86----999899861200126------------------745607999999999982888998836828885--------
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH---HHHHHCCCHHHEE
Q ss_conf 24689999998513-8511000310111225688889887635844077641157663303677---7888478730261
Q gi|254780711|r 199 DSLMQEISEIKSLT-NPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALS---MRTVTGKPIKAIG 274 (461)
Q Consensus 199 ~~lm~El~~i~~~~-~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als---~~~~~~~PI~fig 274 (461)
|+.+|.+.. +|.-+ =|- .-+.+.|| .-+-+ -|-+++ -..+||---. ....--.-|.||+
T Consensus 182 -----EIDKIarks~~~s~t---rDV--SgEGVQqa--LLkii--EGt~v~---vp~~ggrkhp~~~~~~idT~nILFI~ 244 (411)
T PRK05342 182 -----EIDKIARKSENPSIT---RDV--SGEGVQQA--LLKIL--EGTVAS---VPPQGGRKHPQQEFIQVDTTNILFIC 244 (411)
T ss_pred -----EHHHHHHCCCCCCCC---CCC--CCHHHHHH--HHHHH--CCCEEC---CCCCCCCCCCCCCEEEEECCCEEEEE
T ss_conf -----023454247888887---776--51248999--99987--587141---18887777877651676147179991
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 586723210013688998773586
Q gi|254780711|r 275 TGEKINDLENFFPDRIANRILGMG 298 (461)
Q Consensus 275 ~GE~~~dle~F~p~~~~~riLGmg 298 (461)
-|- .+.|+.--..|+-.+-+|+|
T Consensus 245 gGA-F~GL~~II~~R~~~~~iGF~ 267 (411)
T PRK05342 245 GGA-FDGLEKIIKQRLGKSGIGFG 267 (411)
T ss_pred CCC-CCCHHHHHHHHCCCCCCCCC
T ss_conf 155-33589999863578876778
No 368
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.95 E-value=0.1 Score=33.28 Aligned_cols=60 Identities=18% Similarity=0.349 Sum_probs=31.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT 159 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~ 159 (461)
.+-.++.++|+|||||||.+--+...... .......-.....+...++|++.+.+ .++.+
T Consensus 19 ~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~l~~ 78 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGK-ARLISFLPKFSRNKLIFIDQLQFLID-VGLGY 78 (176)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHC-CHHHCCHHHCCCCCEEEHHHHHHHHH-CCCCC
T ss_conf 89989999999999899999988876103-11203210137553688577999997-48866
No 369
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=95.95 E-value=0.047 Score=35.87 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=58.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEE--CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489-50782--0542210047799998510347422233210368999999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKK-KILMA--SLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~-kV~lv--~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
-|.++|--++||||.+..|-+.. +.- ..... ..|+. ..||=+ |+.+.. .++... ...
T Consensus 2 NiaiiGHvd~GKTTL~~~ll~~t---g~i~~~~~~~~~~D~~---~~E~eR------giTi~~-----~~~~~~---~~~ 61 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELT---GTVSKREMKEQVLDSM---DLERER------GITIKA-----QTVRLN---YKA 61 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCEECCCC---HHHHHC------CCEEEE-----EEEEEE---EEC
T ss_conf 59999489989899999999985---9954145732441651---767863------866874-----336888---413
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 97415886998334422211246899999985138511000310111225-----688889887635844077641157
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFDKIVDLTGIILTRMDG 252 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~~~~~i~giIlTKlD~ 252 (461)
...+.|-+-+|||+|. .+...|+..=..+ -|-.+||+||.-|-. ....|+.++ +++ =++++|+|-
T Consensus 62 ~~~~~~~in~iDtPGh----~dF~~~~~~al~~--~D~allVVda~~Gv~~qT~~~~~~a~~~~--~p~-ivviNKiD~ 131 (179)
T cd01890 62 KDGQEYLLNLIDTPGH----VDFSYEVSRSLAA--CEGALLLVDATQGVEAQTLANFYLALENN--LEI-IPVINKIDL 131 (179)
T ss_pred CCCCCEEEEEEECCCC----CCCHHHHHHHHHH--HCEEEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEECCCC
T ss_conf 6787148999989986----4517789889975--44278998647787374899999998769--988-999865556
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.95 E-value=0.11 Score=33.00 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 2100025884189962344333468899999999
Q gi|254780711|r 91 IELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHL 124 (461)
Q Consensus 91 ~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~ 124 (461)
..+.+.++ ++.+||++||||||.+-=|+.++
T Consensus 16 vsl~ip~G---itaIvGpsGsGKSTLl~~i~~~l 46 (197)
T cd03278 16 TTIPFPPG---LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred EEEECCCC---EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69973898---28999999998899999999874
No 371
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.95 E-value=0.043 Score=36.16 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=48.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH------HHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 8996234433346889999999986148950782054221004779------9998510347422233210368999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ------LRYLGEQIQVDTLEVIPEQSPEKIAIRA 175 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ------L~~~a~~~~v~~~~~~~~~dp~~i~~~a 175 (461)
.|+++|+.||||+|-+.+||..| +. +-+-+.|.+|.....+ .+.+-++ |-. .+..-...++++.
T Consensus 2 ~iillG~PGsGKgTqa~~la~~~----~~-~~is~GdllR~~i~~~s~~g~~i~~~~~~-G~l----Vpd~i~~~lv~~~ 71 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY----GI-PHISTGDMLRAAIKAGTELGKEAKSYMDA-GEL----VPDEIVIGLVKER 71 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CC-EEECHHHHHHHHHHCCCHHHHHHHHHHHC-CCC----CCHHHHHHHHHHH
T ss_conf 79998999998799999999986----99-17868899999987399889999999977-987----7889999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 9999741588699833442221124689
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHINDSLMQ 203 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~ 203 (461)
+..... ..-.|+|=--|.......++
T Consensus 72 l~~~~~--~~G~IlDGfPRt~~Qa~~l~ 97 (215)
T PRK00279 72 LAQPDC--ANGFLLDGFPRTIPQAEALD 97 (215)
T ss_pred HHCCCC--CCEEEEECCCCCHHHHHHHH
T ss_conf 836565--57079868999879999999
No 372
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family; InterPro: IPR005700 The bacterial exopolysaccharide transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed at least seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport.
Probab=95.94 E-value=0.15 Score=32.01 Aligned_cols=147 Identities=21% Similarity=0.380 Sum_probs=87.4
Q ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH---------------HHHHHCC------
Q ss_conf 884189962-344333468899999999861489507820542210047799---------------9985103------
Q gi|254780711|r 98 PSPLVIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL---------------RYLGEQI------ 155 (461)
Q Consensus 98 ~~p~vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL---------------~~~a~~~------ 155 (461)
..| ||.+. -..+.||.--.+-+|+-+.. +|+++++|.+|.-.+++..-+ +.|-.-+
T Consensus 560 ~~P-vv~~~~p~p~~Gks~i~an~aaliA~-ggkR~llidad~rk~~l~q~~~~~~~~GL~d~LaG~rs~~~~~~~~~~~ 637 (778)
T TIGR01005 560 SEP-VVALASPLPDVGKSIIEANLAALIAA-GGKRVLLIDADIRKAALSQILVKAEKSGLLDLLAGERSLELDVKAEVAA 637 (778)
T ss_pred CCC-EEEECCCCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 987-58856888866568899999999832-6871787326776055564421478885375564246566303402367
Q ss_pred CCCCCCCC----CCCHHHHHH-----HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCH--
Q ss_conf 47422233----210368999-----9999999741588699833442221124689999998513851100-03101--
Q gi|254780711|r 156 QVDTLEVI----PEQSPEKIA-----IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEIL-LVADA-- 223 (461)
Q Consensus 156 ~v~~~~~~----~~~dp~~i~-----~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~-lV~da-- 223 (461)
+.+++... .-..+.++. .+-++.|.. .||+++|||+--.++-. .+.+.. -|+-++ ||..=
T Consensus 638 ~l~~l~~GGas~~~h~~~eLLaspa~~~l~~~ar~-~~D~vvvd~~~~~pV~d-----~~a~a~--la~~~lslvt~~~r 709 (778)
T TIGR01005 638 KLDILDAGGASLLRHNSSELLASPAMVELVENARS-AYDLVVVDVAAVAPVAD-----AKALAA--LADLVLSLVTEYDR 709 (778)
T ss_pred CCHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHH-HCCEEEECCCHHHHHHH-----HHHHHH--CCCEEEHHEEEECC
T ss_conf 71123347612478884153216688999998865-18857745531248999-----999742--24200200111144
Q ss_pred H---CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 1---12256888898876358440776411576633
Q gi|254780711|r 224 L---TGQDAVHLARNFDKIVDLTGIILTRMDGDGRG 256 (461)
Q Consensus 224 ~---~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akg 256 (461)
+ .+.+.+.+....+ ..+.||||.++|-+..+
T Consensus 710 ~~~~~~r~~~~~~~~~n--~~v~gV~ln~ldpn~~~ 743 (778)
T TIGR01005 710 SVVELVRELLKSLSRLN--SEVLGVVLNKLDPNELV 743 (778)
T ss_pred EEHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCHH
T ss_conf 10444288775445318--60456650455752011
No 373
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=95.94 E-value=0.0088 Score=41.44 Aligned_cols=117 Identities=22% Similarity=0.386 Sum_probs=69.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
|+-++|.-+|||||-+.+|+..|+. +|.+|++|==+-+ | +....++ ..|+|-.. + .+
T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~~-~Gy~V~~IKH~gh--G--------~H~~~~d----~~GkDs~r-------h-r~ 57 (165)
T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALKA-RGYRVATIKHDGH--G--------HHDFDID----KEGKDSYR-------H-RE 57 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHC-CCCCEEEEEECCC--C--------CCCCEEC----CCCCCCHH-------H-HH
T ss_conf 9378962588678999999999970-7995089860898--8--------8756527----99873133-------2-10
Q ss_pred CCCCEEEEECCCCCCCHHHHH----HHHHHHHHHCCC--CCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 158869983344222112468----999999851385--11000310111225688889887635844077641157663
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLM----QEISEIKSLTNP--HEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGR 255 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm----~El~~i~~~~~p--~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~ak 255 (461)
-+.|.++|=+.-|...=..+- ..|..+.....| ...+| ++-|++ .++.-+++-+-+....
T Consensus 58 AGA~~v~~~~~~~~~~~~~~~g~~e~~L~~~l~~~~~~~~D~~L-------------vEGfK~-~~~pKi~~~r~~~~~~ 123 (165)
T TIGR00176 58 AGADAVIVASSERYAVMTETQGEEELDLEALLKRLADRELDIIL-------------VEGFKD-SPLPKIVVIRNEAEEK 123 (165)
T ss_pred CCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCEEE-------------EECCCC-CCCCEEEEEECCCCCC
T ss_conf 43627886679068998752899987879998642855268789-------------852455-7887489972675566
No 374
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.94 E-value=0.089 Score=33.79 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=27.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 84189962344333468899999999861489507820542
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
+-.++.+||++||||||.+.=|+..+.. .|. |.+-..|.
T Consensus 29 ~Ge~vaIvG~sGsGKSTLl~lL~gl~~~-~G~-I~idg~~i 67 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGD-IQIDGVSW 67 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC-CCE-EEECCEEC
T ss_conf 9999999999999799999999603578-953-99998806
No 375
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=95.94 E-value=0.014 Score=39.97 Aligned_cols=107 Identities=20% Similarity=0.329 Sum_probs=54.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ 177 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~ 177 (461)
+++..|+++|..||||||-+-++. . +.-.- +-| + +|+.+...
T Consensus 12 ~k~~Ki~llG~~~vGKTsll~~~~----~--~~~~~------~~p-------T----ig~~~~~v--------------- 53 (174)
T pfam00025 12 NKEMRILILGLDNAGKTTILYKLK----L--GEIVT------TIP-------T----IGFNVETV--------------- 53 (174)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH----C--CCCCC------CCC-------C----CCCEEEEE---------------
T ss_conf 966699999999998899999995----4--99887------447-------4----68238999---------------
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHHHHC------CCCC-EEEE
Q ss_conf 9974158869983344222112468999-99985138511000310111225688889-887635------8440-7764
Q gi|254780711|r 178 SARDGGYDAVILDTAGRNHINDSLMQEI-SEIKSLTNPHEILLVADALTGQDAVHLAR-NFDKIV------DLTG-IILT 248 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~~~~------~i~g-iIlT 248 (461)
..+++.+.+.||||.... ..+ +...+ +.+-+++|.|++-- +.++.++ .+.+.+ ++.- ++.+
T Consensus 54 --~~~~~~~~iwDt~Gqe~~-----~~~~~~y~~--~a~~ii~V~D~t~~-~s~~~~~~~l~~~l~~~~~~~~piliv~N 123 (174)
T pfam00025 54 --TYKNVKFTVWDVGGQESL-----RPLWRNYFP--NTDAVIFVVDSADR-DRIEEAKEELHALLNEEELADAPLLILAN 123 (174)
T ss_pred --EECCEEEEEEECCCCCCC-----CHHHHHHHC--CCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf --989999999827987023-----267998841--78268999867867-87999999999987542358970899872
Q ss_pred ECCC
Q ss_conf 1157
Q gi|254780711|r 249 RMDG 252 (461)
Q Consensus 249 KlD~ 252 (461)
|.|=
T Consensus 124 K~DL 127 (174)
T pfam00025 124 KQDL 127 (174)
T ss_pred CCCC
T ss_conf 5667
No 376
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.93 E-value=0.074 Score=34.40 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=39.6
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 0025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r 94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV 157 (461)
Q Consensus 94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v 157 (461)
.+.-..-.++.++|++||||||.+-=++..+.-..| ++.+-.-|.......+.-..+.+.++.
T Consensus 24 sl~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~rr~~Ig~ 86 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG-EVRVDGTDISKLSEKELAAFRRRHIGF 86 (218)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHHHCCEEE
T ss_conf 899869989999999998699999999669999964-999999998879989999986504789
No 377
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.92 E-value=0.13 Score=32.60 Aligned_cols=224 Identities=14% Similarity=0.149 Sum_probs=100.3
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHHHCCCCCCCCCC--------
Q ss_conf 00025884189962344333468899999999861489507820542-210047799998510347422233--------
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV-HRPAAQEQLRYLGEQIQVDTLEVI-------- 163 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt-~R~aA~eQL~~~a~~~~v~~~~~~-------- 163 (461)
+...++ .++.++|.|||||||.+-=++..+.-..|. |.+-..+. ...-....++.+.+.+++-| ..+
T Consensus 32 l~i~~G--e~~aIiG~nGsGKSTL~~~l~Gll~p~~G~-v~~~~~~i~~~~~~~~~~~~~r~~vG~vf-Q~P~~qlf~~t 107 (289)
T PRK13645 32 LTFKKN--KVTCVIGTTGSGKSTMIQLTNGLIISETGQ-TIVGDYAIPANLKKIKEVKRLRKEIGLVF-QFPEYQLFQET 107 (289)
T ss_pred EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCCCHHHHHHHHCCEEEEE-ECCCCCCCHHH
T ss_conf 898899--899999999957999999996598899985-99999983476531557899763679996-67764626637
Q ss_pred -----------CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHH
Q ss_conf -----------2103689999999999741588699833442221--1246899999985138511000310-1112256
Q gi|254780711|r 164 -----------PEQSPEKIAIRATQSARDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLTNPHEILLVAD-ALTGQDA 229 (461)
Q Consensus 164 -----------~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a 229 (461)
.+.++.++..+.-+..+.-+.+ -|-+.|.+. ... ..+--.|..++--+--+|++| .++|.|.
T Consensus 108 V~~~iafg~~n~g~~~~e~~~rv~~~l~~v~L~---~~~~~~~p~~LSGG-qkqRVaiA~aLa~~P~iLilDEPTagLDp 183 (289)
T PRK13645 108 IEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP---EDYVKRSPFELSGG-QKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC---HHHHCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 999998679876999999999999999876998---66741890109999-99999999999639999999588764898
Q ss_pred HH------HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCCC-HHHHHHHHHCCCC
Q ss_conf 88------889887635844077641157663303677788847873026158672321---0013-6889987735862
Q gi|254780711|r 230 VH------LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENFF-PDRIANRILGMGD 299 (461)
Q Consensus 230 ~~------~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F~-p~~~~~riLGmgD 299 (461)
.. ..+..++..+.|=+++|- | +..+...---|..+-.|+-+.+= |.|. ++.+...=|....
T Consensus 184 ~~~~~i~~ll~~L~~~~g~Tvi~vtH-d--------m~~v~~~aDrviVm~~G~iv~~G~p~evf~~~~~l~~~~l~~P~ 254 (289)
T PRK13645 184 KGEEDFINLFERLNKEYKKRIIMVTH-N--------MDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPK 254 (289)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCH
T ss_conf 99999999999999956999999915-9--------99999979999999899899987889986799999977999985
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 78899987421-12678998886531046379999999999851
Q gi|254780711|r 300 VVSLVEKAARN-LNEKQAALTAKKIAKGKFDLEDLAEQFRQTQK 342 (461)
Q Consensus 300 ~~~l~e~~~~~-~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~k 342 (461)
+..|.++.++. ++ ..-..-+|.+++.+++..+-|
T Consensus 255 ~~~l~~~L~~~g~~---------~~~~~~~t~ee~~~~l~~~~~ 289 (289)
T PRK13645 255 LYQLMYKLKNKGID---------LLNKNIRTIEEFAKELAKVLK 289 (289)
T ss_pred HHHHHHHHHHCCCC---------CCCCCCCCHHHHHHHHHHHHC
T ss_conf 99999999976998---------889997999999999999759
No 378
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.92 E-value=0.045 Score=36.01 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=45.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
..+.+.|+.|+|||.-+-=+|+.+.. .++++..+++..+..-..+ .++ .
T Consensus 39 ~~l~i~G~~GsGKTHLl~a~~~~~~~-~~~~~~yl~~~~~~~~~~~----------------------------~l~--~ 87 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEE-RGKSAIYLPLAELAQADPE----------------------------VLE--G 87 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEECHHHHHHHHHH----------------------------HHH--H
T ss_conf 86999899999889999999999862-6995799529998775399----------------------------997--2
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 415886998334422211246899999985
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKS 210 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~ 210 (461)
.+.+|+++||-.-+...+...-+++=.+.+
T Consensus 88 l~~~d~l~iDDi~~i~~~~~~e~~lF~l~N 117 (226)
T TIGR03420 88 LEQADLVCLDDVEAIAGQPEWQEALFHLYN 117 (226)
T ss_pred CCCCCEEEEECHHHHCCCHHHHHHHHHHHH
T ss_conf 744899999663334378378999999999
No 379
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=95.92 E-value=0.023 Score=38.24 Aligned_cols=70 Identities=27% Similarity=0.248 Sum_probs=46.6
Q ss_pred HHHHHHHHH-HHHHCCCCCCCCCCCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf 999999999-98718774210002588418996234433-34688999999998614895078205422100477
Q gi|254780711|r 74 VIKIVHDEL-VEVLGKESIELDLNAPSPLVIMLVGLQGS-GKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE 146 (461)
Q Consensus 74 i~kiv~~eL-~~lLg~~~~~l~~~~~~p~vIllvGl~Gs-GKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e 146 (461)
+..+.+.++ ...|+.....+--.|.+ -+-+||++|. |||||+-=++.+|.. -|+|++|++|=-||.+.-+
T Consensus 60 V~~i~~~d~~r~~~~~~A~~fY~~Ps~--~l~viGvTGTNGKTtt~~li~~~l~~-~G~~tgliGT~g~~~~g~~ 131 (494)
T TIGR01085 60 VPVIIVPDLKRHALSSLAAAFYGHPSK--KLKVIGVTGTNGKTTTTSLIAQLLEL-LGKKTGLIGTIGYRLGGNE 131 (494)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCC--CEEEEEEEECCCCHHHHHHHHHHHHH-CCCEEEEEEEEEEECCCCC
T ss_conf 107996231358889999997348552--51689997128744899999999986-7970899865453047763
No 380
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.16 Score=31.87 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=60.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
..-|+-++|+|+.|+||++++--+|.++--.+. ..--+|+.-+.- +.-.-+..-++-++.....+-.++-+++-.
T Consensus 25 ~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~--~~~~~Cg~C~~C---~~~~~~~HPD~~~i~p~~~~i~idqiR~L~ 99 (329)
T PRK08058 25 NRLAHAYLFEGAKGTGKKATALWLAKSLFCLER--NGVEPCGTCTNC---KRIESGNHPDVHLVAPDGQSIKKDQIRYLK 99 (329)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCCCCHHH---HHHHCCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 996615655789998899999999999739999--999988788899---998769999767745661407799999999
Q ss_pred HHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf 9997----415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r 177 QSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240 (461)
Q Consensus 177 ~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~ 240 (461)
+.+. ..+|-|+|||-|-++..... .-|-+.-+.= |..++|++=+.--+.-..++..=.+.+
T Consensus 100 ~~~~~~p~~g~~KV~II~~Ae~m~~~Aa--NALLKtLEEP-p~~t~fIL~t~~~~~lLpTI~SRCq~i 164 (329)
T PRK08058 100 EEFSKSGVESNKKVYIIEHADKMTASAA--NSLLKFLEEP-SGDTTAILLTENKHQILPTILSRCQVV 164 (329)
T ss_pred HHHCCCCCCCCCEEEEEECHHHHCHHHH--HHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHHCCEEE
T ss_conf 9964387578867999734776299999--9999986468-978679987299666436886314256
No 381
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.90 E-value=0.12 Score=32.72 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999998718774210002588418996234433346889999999986
Q gi|254780711|r 76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKT 126 (461)
Q Consensus 76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~ 126 (461)
+-+++.|.+.+.. ..-|+-+||.|+.|+||++++-.+|.++.-
T Consensus 10 ~~~~~~L~~~i~~--------~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc 52 (319)
T PRK08769 10 QRAFDQTVAALDA--------GRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred HHHHHHHHHHHHC--------CCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8999999999976--------994206875899987899999999999837
No 382
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.14 Score=32.31 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=54.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
.+.-++|.|..|+|||--++-+|+.+. +.|.+|.++++ |--+.+|+.--.. +.-...+ ..
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~g~sv~f~~~----~el~~~Lk~~~~~----------~~~~~~l-----~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITA----PDLLSKLKAAFDE----------GRLEEKL-----LR 163 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEH----HHHHHHHHHHHHC----------CCHHHHH-----HH
T ss_conf 588289989999879999999999999-83984999885----9999999998745----------5268999-----98
Q ss_pred HHHCCCCEEEEECCCCCCCHHH
Q ss_conf 9741588699833442221124
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDS 200 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~ 200 (461)
.-.++|++|||--|-.+.+.+
T Consensus 164 -~l~~~dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 164 -ELKKVDLLIIDDIGYEPFSQE 184 (254)
T ss_pred -HHHHCCEEEEECCCCCCCCCH
T ss_conf -875289899823677668815
No 383
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=95.87 E-value=0.017 Score=39.35 Aligned_cols=110 Identities=16% Similarity=0.093 Sum_probs=64.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 34433346889999999986148950782054221004779-99985103474222332103689999999999741588
Q gi|254780711|r 107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ-LRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYD 185 (461)
Q Consensus 107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ-L~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D 185 (461)
|.-|+|||+.+-.+..+++. .++.|+ ++|=|-.||..=+ =.|+-.-.++|+-.. +.....+-+..-..-.-+..|
T Consensus 1 G~AGTGKS~ll~~i~~~l~~-~~~~v~-vtA~TGiAA~~i~gG~TiHs~~gi~~~~~--~~~~~~~~~~~~~~~~~~~~~ 76 (418)
T pfam05970 1 GYGGTGKTFLWNALSARIRS-RGKIVL-NVASSGIAALLLPGGRTAHSRFGIPLDID--EDSTCKIKRGSKLAELLKKAS 76 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHCCCCCEEHHHCCCCCCCCC--CCCCEEECCCHHHHHHHHHCC
T ss_conf 97988799999999999976-898899-98968999851699873985269898877--420112133778899874087
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCC---C------CCCCCCC
Q ss_conf 69983344222112468999999851385---1------1000310
Q gi|254780711|r 186 AVILDTAGRNHINDSLMQEISEIKSLTNP---H------EILLVAD 222 (461)
Q Consensus 186 ~iiiDTaGR~~~d~~lm~El~~i~~~~~p---~------e~~lV~d 222 (461)
++|||=...+ +.++++-|..+.+.+.. + .++|+-|
T Consensus 77 vLIIDEiSMv--~~~lfd~id~~lr~i~~~~~~~PFGGiqvIl~GD 120 (418)
T pfam05970 77 LIIWDEAPMT--HRHCFEALDRTLRDILKNTDDKPFGGKTVVLGGD 120 (418)
T ss_pred EEEEECCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 9998541135--7899999999999987127876779747998244
No 384
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=95.87 E-value=0.033 Score=37.10 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=25.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 588418996234433346889999999986
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKT 126 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~ 126 (461)
..-|+-+||+|+.|+||||++--+|..+-.
T Consensus 23 ~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~ 52 (313)
T PRK05564 23 GKFSHASLIVGEDGIGKSILAKEIANKILG 52 (313)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 998750432799985099999999999828
No 385
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=95.87 E-value=0.012 Score=40.55 Aligned_cols=141 Identities=21% Similarity=0.272 Sum_probs=69.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 62344333468899999999861489507820542210047799998510347422233210368999999999974158
Q gi|254780711|r 105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGY 184 (461)
Q Consensus 105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~ 184 (461)
++|..-|||+|-+-.|.. .++. |+ | .|+-. .|+.. ....-.+.
T Consensus 1 ivG~pNvGKSTL~N~L~g-------~~~~-vs-~------------------~pgtT----rd~~~------~~~~~~~~ 43 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG-------ARQK-VG-N------------------WPGVT----VEKKE------GRFKLGGK 43 (158)
T ss_pred CCCCCCCCHHHHHHHHHC-------CCCE-EC-C------------------CCCCE----EEEEE------EEEEECCE
T ss_conf 979898889999999959-------9864-61-7------------------89827----63478------89962993
Q ss_pred CEEEEECCCCCCCHHHHHHHH--HHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHH-
Q ss_conf 869983344222112468999--9998513851100031011122568888988763584-407764115766330367-
Q gi|254780711|r 185 DAVILDTAGRNHINDSLMQEI--SEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDL-TGIILTRMDGDGRGGAAL- 260 (461)
Q Consensus 185 D~iiiDTaGR~~~d~~lm~El--~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i-~giIlTKlD~~akgG~al- 260 (461)
.++++||+|-......-.+|. +.....-..|-+++|+||.--..-...+....+ .+. .=++++|.|--.+-.-..
T Consensus 44 ~~~lvDtpGi~~~~~~~~~e~i~~~~~~~~~~d~vl~vvD~~~~~~~l~~~~~l~~-~~~p~ivV~NK~D~~~~~~~~~~ 122 (158)
T cd01879 44 EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLE-LGLPVVVALNMIDEAEKRGIKID 122 (158)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH-CCCCEEEEEEHHHHHHHCCCHHH
T ss_conf 79999798741256413567899999985178717999777406776899999986-59988999402776552254667
Q ss_pred --HHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf --77888478730261--586723210
Q gi|254780711|r 261 --SMRTVTGKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 261 --s~~~~~~~PI~fig--~GE~~~dle 283 (461)
.+....+.||.+|+ +||.+++|.
T Consensus 123 ~~~l~~~~~~~ii~iSA~~g~Gi~~L~ 149 (158)
T cd01879 123 LDKLSELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 999998719948999877897999999
No 386
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.85 E-value=0.21 Score=30.92 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=100.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-------CCCC-------
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742-------2233-------
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-------LEVI------- 163 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-------~~~~------- 163 (461)
.+-.++.++|+|||||||++-=|+..++-..| +|.+-..++... -.++..+.++++.-| |...
T Consensus 26 ~~Ge~vaiiG~nGsGKSTLl~~l~Gll~P~~G-~I~v~G~~i~~~--~~~~~~~r~~vg~vfQ~p~~ql~~~tV~e~i~f 102 (275)
T PRK13639 26 EEGEMIAILGPNGAGKSTLFLHFNGILKPSSG-SVLIKGEPIKYD--KKSLLNVRKTVGIVFQNPDDQLFAPTVEEDVAF 102 (275)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCC--CHHHHHHHHHCEEEECCCHHHHCCCCHHHHHHH
T ss_conf 89989999999996499999999739899963-999999999888--065999987415993383576562719999999
Q ss_pred ----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHH-----
Q ss_conf ----2103689999999999741588699833442221124-6899999985138511000310-1112256888-----
Q gi|254780711|r 164 ----PEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVAD-ALTGQDAVHL----- 232 (461)
Q Consensus 164 ----~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~----- 232 (461)
.+-...++..+ ++.+-+ . +=|-|-+.|.+.+=. =+.+.-.|..++--+--+|++| .+.|.|...+
T Consensus 103 g~~~~g~~~~e~~~r-v~~~l~-~--~gL~~~~~~~p~~LSGGqkqRVaiA~aLa~~P~iliLDEPTagLDp~~~~~i~~ 178 (275)
T PRK13639 103 GPMNLGLSKEEVEKR-VKDALK-A--VGMEGFERKPPHHLSGGQKKRVAIAGILAMNPEIMVLDEPTSGLDPMGASQIMK 178 (275)
T ss_pred HHHHCCCCHHHHHHH-HHHHHH-H--CCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 999859999999999-999998-7--799456657944499999999999888736998999779755489999999999
Q ss_pred -HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCC---CCCCC-HHHHHHHHHCCCCHHHHHHHH
Q ss_conf -8988763584407764115766330367778884787302615867232---10013-688998773586278899987
Q gi|254780711|r 233 -ARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKIND---LENFF-PDRIANRILGMGDVVSLVEKA 307 (461)
Q Consensus 233 -a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~d---le~F~-p~~~~~riLGmgD~~~l~e~~ 307 (461)
.+..++. +.|=+++| -| +..+...---|..+.-|+-+.+ =|.|. |+.+-..=|....+..|.++.
T Consensus 179 ll~~l~~~-G~Tii~iT-Hd--------m~~~~~~adrv~vl~~G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~l~~~L 248 (275)
T PRK13639 179 LLYDLNKE-GITIIIST-HD--------VDLVPIYANKIYVLNDGKIIKGGTPKEIFSDSETIRSANLRLPRVAHLIELL 248 (275)
T ss_pred HHHHHHHC-CCEEEEEC-CC--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999976-99999993-89--------9999996999999989989998788998749999997799999099999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 4211267899888653104637999999999985
Q gi|254780711|r 308 ARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQ 341 (461)
Q Consensus 308 ~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~ 341 (461)
++.- .-..+.-+|++.+.+-++..-
T Consensus 249 ~~~~---------~~~~~~~~t~~e~~~~~~~~~ 273 (275)
T PRK13639 249 NKED---------NLGIKMGYTIGEARRNIKEFI 273 (275)
T ss_pred HHCC---------CCCCCCCCCHHHHHHHHHHHH
T ss_conf 7536---------998888746999999999985
No 387
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.011 Score=40.73 Aligned_cols=42 Identities=31% Similarity=0.424 Sum_probs=34.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 884189962344333468899999999861489507820542210
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP 142 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~ 142 (461)
.++.+|...|.-||||||-+-+|+..+.. .+|.+++-|.|=-
T Consensus 6 ~~~iiIgIaG~SgSGKTTv~~~l~~~~~~---~~~~~I~~D~YYk 47 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV---EKVVVISLDDYYK 47 (218)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCC---CCCEEEECCCCCC
T ss_conf 76699998679877889999999998286---7524765223202
No 388
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.14 Score=32.34 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=29.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 884189962344333468899999999861489507820542
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
.+-.++.+||++||||||.+-=|+..|.-..|. |.+-..|.
T Consensus 27 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~-I~idg~~i 67 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ-ILIDGIDI 67 (229)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEEC
T ss_conf 799999999999980999999996686678738-99999995
No 389
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.83 E-value=0.16 Score=31.82 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=30.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 841899623443334688999999998614895078205422
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
+-..+.+||++||||||.+-=|+.++.-..| +|.+-..|..
T Consensus 33 ~Ge~v~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~idg~di~ 73 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLEAEEG-KIEIDGIDIS 73 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCC-EEEECCEECC
T ss_conf 9999999999998799999999987288887-8999999954
No 390
>KOG0926 consensus
Probab=95.83 E-value=0.061 Score=35.02 Aligned_cols=108 Identities=20% Similarity=0.254 Sum_probs=67.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHHCCC-CEEEECCCCCCCHHHHHHHHHHHCCCC-C--C-CCCCCCC----H-HH
Q ss_conf 8996234433346889999999--9861489-507820542210047799998510347-4--2-2233210----3-68
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYH--LKTLKKK-KILMASLDVHRPAAQEQLRYLGEQIQV-D--T-LEVIPEQ----S-PE 169 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~--~~~~~~~-kV~lv~~Dt~R~aA~eQL~~~a~~~~v-~--~-~~~~~~~----d-p~ 169 (461)
|+.+||-+||||||-+-..-+- |...... +-++.-+.-.|.||+.--+-.|..+++ + | |.....+ | .+
T Consensus 273 vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti~e~T~I 352 (1172)
T KOG0926 273 VVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTIGEDTSI 352 (1172)
T ss_pred EEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEE
T ss_conf 49995488888644341899871347766799870540572278999999999998525764114899853656887404
Q ss_pred ------HHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHHHH
Q ss_conf ------999999999974158869983344222-1124689999998
Q gi|254780711|r 170 ------KIAIRATQSARDGGYDAVILDTAGRNH-INDSLMQEISEIK 209 (461)
Q Consensus 170 ------~i~~~a~~~a~~~~~D~iiiDTaGR~~-~d~~lm~El~~i~ 209 (461)
-+.++--..|....|.+||||-|---. +-+-|+.=|.+|.
T Consensus 353 kFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV 399 (1172)
T KOG0926 353 KFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIV 399 (1172)
T ss_pred EEECCHHHHHHHHHHHHHHHCEEEEECHHHHCCCHHHHHHHHHHHHH
T ss_conf 77402388999887675542015785125430312789999998877
No 391
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=95.82 E-value=0.014 Score=39.84 Aligned_cols=158 Identities=19% Similarity=0.234 Sum_probs=84.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----------CHHHHHHHHHH---H-----------CCC
Q ss_conf 8996234433346889999999986148950782054221-----------00477999985---1-----------034
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-----------PAAQEQLRYLG---E-----------QIQ 156 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-----------~aA~eQL~~~a---~-----------~~~ 156 (461)
.|.+.|=-|.|||||++-|++-+.. .|+||++|.||--. +--+|-|+.-. + .-|
T Consensus 2 ~iaiyGKGGIGKSTtsaNlsaaLA~-~GkkVl~IGcDpk~DsT~~L~g~~~~tvld~l~~~~~~~~~~~~edvi~~G~~g 80 (271)
T CHL00072 2 KIAVYGKGGIGKSTTSCNISIALAR-RGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGG 80 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf 6999789854485889999999998-799799978997377774006998885999997537873216499998527788
Q ss_pred CCCCCC---CCCC----HHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCC
Q ss_conf 742223---3210----368999999999974-158869983344222112468999999851385110003101--112
Q gi|254780711|r 157 VDTLEV---IPEQ----SPEKIAIRATQSARD-GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LTG 226 (461)
Q Consensus 157 v~~~~~---~~~~----dp~~i~~~a~~~a~~-~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~G 226 (461)
+.++.. .++. --+..+.+-++.... +.||+|++|..|-.---.=-| -+ + .-++++.|-.+ |.=
T Consensus 81 i~cvEaGGPepGvGCaGrgi~~~i~lL~~l~~~~d~D~V~yDvlgDVVCGGFa~-Pi----~--~Ad~~~iVts~e~mal 153 (271)
T CHL00072 81 VDCVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDVILFDVLGDVVCGGFAA-PL----N--YADYCIIITDNGFDAL 153 (271)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-CC----C--CCCEEEEEECCCHHHH
T ss_conf 466543899988777886519999999973762138889994477655654567-50----0--0888999956708899
Q ss_pred HHHHHHHHHHHH---H--CCCCCEEEEECCCCCCCCHHHH-HHHHHCCCHH
Q ss_conf 256888898876---3--5844077641157663303677-7888478730
Q gi|254780711|r 227 QDAVHLARNFDK---I--VDLTGIILTRMDGDGRGGAALS-MRTVTGKPIK 271 (461)
Q Consensus 227 q~a~~~a~~F~~---~--~~i~giIlTKlD~~akgG~als-~~~~~~~PI~ 271 (461)
.+|-|+++.-.+ . +.+.|+|.-+.++ ...++ .+..++.|+.
T Consensus 154 yaANnI~~~i~~~a~~~~~rl~GiI~N~~~~----~~~v~~fa~~~g~~~i 200 (271)
T CHL00072 154 FAANRIAASVREKARTHPLRLAGLVGNRTSK----RDLIDKYVEACPMPVL 200 (271)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCC----HHHHHHHHHHCCCCEE
T ss_conf 9999999999997304686444365226883----7899999997399669
No 392
>PRK06762 hypothetical protein; Provisional
Probab=95.81 E-value=0.035 Score=36.88 Aligned_cols=93 Identities=24% Similarity=0.302 Sum_probs=53.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
+..|.+=|--||||||++..|-.+| |+.+++|+-|+.|- +=|+ +. ..++.-.+.+...-+.++
T Consensus 2 t~LIiiRGNSgSGKtT~Ak~L~~~~----G~g~lLvsQD~vRR---~mLr-------~k---D~~g~~~i~Li~~~~~yg 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL----GRGTLLVSQDVVRR---DMLR-------VK---DGPGNLSIDLIEQLVRYG 64 (166)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEHHHHHH---HHHH-------CC---CCCCCCCHHHHHHHHHHH
T ss_conf 5289997888888789999999986----88857853758999---9840-------55---779997868999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 7415886998334422211246899999985
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISEIKS 210 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~ 210 (461)
.+ ++++||+.--=....-.+++.+|.+...
T Consensus 65 ~~-~~~~VIlEGIL~a~~Yg~ml~~l~~~~~ 94 (166)
T PRK06762 65 LQ-HCEFVILEGILNSDRYGPMLKELIHLFG 94 (166)
T ss_pred HH-CCCEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 85-6998999741004489999999998657
No 393
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.80 E-value=0.17 Score=31.62 Aligned_cols=128 Identities=19% Similarity=0.200 Sum_probs=60.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH-------------CCCCCCCCCCCCCH
Q ss_conf 18996234433346889999999986148950782054221004779999851-------------03474222332103
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE-------------QIQVDTLEVIPEQS 167 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~-------------~~~v~~~~~~~~~d 167 (461)
..+.+||+.||||||-+.=|+.+|.-..|. |.+-..|.... ..+.|+..-. +-|+.+ +.+..+
T Consensus 362 e~vaiVG~SGsGKSTL~~LL~gly~p~~G~-I~idg~di~~i-~~~~lR~~i~~V~Q~~~LF~gTI~eNI~~-g~~~~s- 437 (585)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLHRVFDPQSGR-IRIDGTDIRTV-TRASLRRNIGVVFQEAGLFNRSIEDNLRV-GRPDAT- 437 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCC-EEECCEECHHC-CHHHHHHHCCEECCCCCCCCHHHHHHHHC-CCCCCC-
T ss_conf 889998898986999999986015788796-75898961016-89999852522166763547659988752-799998-
Q ss_pred HHHHHHHHHHHHH--------HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHHHHH
Q ss_conf 6899999999997--------415886998334422211246899999985138511000310-11122568888988
Q gi|254780711|r 168 PEKIAIRATQSAR--------DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLARNF 236 (461)
Q Consensus 168 p~~i~~~a~~~a~--------~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a~~F 236 (461)
..+ +.+|++.+. .++||..+-+-.-++.--+ .+.-.|.++.=-+-.+|++| |+..=|+...++.+
T Consensus 438 d~e-i~~a~~~a~~~~~I~~lp~G~dT~vge~G~~LSGGQ---rQRialARAll~~p~IliLDEaTSaLD~~tE~~i~ 511 (585)
T PRK13657 438 DEE-MRAAAERAQALDFIERKEDGYDTVVGERGRQLSGGE---RQRLAIARALLKDPPILILDEATSALDAETEAKVK 511 (585)
T ss_pred HHH-HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHH---HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 688-999999843279997175666680137888689999---99999999994698989986887689999999999
No 394
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=95.79 E-value=0.042 Score=36.26 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCCEEEEECCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHH-HHH---H------CCC--
Q ss_conf 588699833442---221124689999998513851100031011122-----56888898-876---3------584--
Q gi|254780711|r 183 GYDAVILDTAGR---NHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARN-FDK---I------VDL-- 242 (461)
Q Consensus 183 ~~D~iiiDTaGR---~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~-F~~---~------~~i-- 242 (461)
+..++++||+|= .+.+.+++++.- ...-..|-+++|+|+.-.- +.++..+. ..+ . ...
T Consensus 43 ~~~i~~~DtpGi~~~~~~~~~~~~~~l--~~~~~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~ 120 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFL--AHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA 120 (176)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHH--HHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 966999957875457337878999999--874108899999989876554544589999999999997115665554326
Q ss_pred --CCEEEEECCCCCCCCHHH----HHHHHHCCCHHHEEC
Q ss_conf --407764115766330367----778884787302615
Q gi|254780711|r 243 --TGIILTRMDGDGRGGAAL----SMRTVTGKPIKAIGT 275 (461)
Q Consensus 243 --~giIlTKlD~~akgG~al----s~~~~~~~PI~fig~ 275 (461)
.=++++|.|--.+....- ......+.|+.+|+.
T Consensus 121 kp~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iSA 159 (176)
T cd01881 121 KPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred CCEEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 971999968603470031599999997468995899977
No 395
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.78 E-value=0.012 Score=40.32 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 000258841899623443334688999999998614895078205422
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
+.+.-.+-.++-++|+|||||||++-=|+-.++-..| .|.+-..|.+
T Consensus 40 vsf~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G-~I~v~G~~~~ 86 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG-EVRVAGLVPW 86 (236)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECC
T ss_conf 0578848959999999983099999999649488715-9999999851
No 396
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.77 E-value=0.075 Score=34.35 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=28.8
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 002588418996234433346889999999986148950782054
Q gi|254780711|r 94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD 138 (461)
Q Consensus 94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D 138 (461)
.+.-.+-..|.+||++||||||.+-=|..+|.-..|. |.+-..|
T Consensus 24 sl~i~~G~~v~ivG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~ 67 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS-VLLDGTD 67 (220)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEE
T ss_conf 9998799999999999985999999996725478658-9999999
No 397
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.77 E-value=0.014 Score=39.99 Aligned_cols=229 Identities=17% Similarity=0.240 Sum_probs=105.1
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 00025884189962344333468899999999861489507820542210047799998510347422233210368999
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA 172 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~ 172 (461)
+...++ .++.++|+|||||||.+-=|+..++-..| +|.+-..|....-.-..++.+.+++++-| ..+..+=....+
T Consensus 28 l~I~~G--e~~~iiG~nGsGKSTLl~~l~Gll~P~sG-~V~i~G~~i~~~~~~~~~~~~r~~vg~vf-Q~p~~ql~~~tV 103 (286)
T PRK13641 28 FELEDG--SFVALIGHTGSGKSTLMQHFNALLKPSSG-KITIAGYHITPETSNKNLKDLRKKVGLVF-QFPEAQLFENTV 103 (286)
T ss_pred EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCCHHHHHHHHHHEEEEE-ECCCCCCCCCHH
T ss_conf 798699--99999999983999999999659898854-99999899976665557999985154897-665101261129
Q ss_pred HHHHHHHHHC-C-------------CC-EEEE-ECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHH---
Q ss_conf 9999999741-5-------------88-6998-33442221124-6899999985138511000310-111225688---
Q gi|254780711|r 173 IRATQSARDG-G-------------YD-AVIL-DTAGRNHINDS-LMQEISEIKSLTNPHEILLVAD-ALTGQDAVH--- 231 (461)
Q Consensus 173 ~~a~~~a~~~-~-------------~D-~iii-DTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~--- 231 (461)
.+-+.++..+ + .+ +-+. |-+.|.+.+=. =+.+--.|..+.--+--+|++| .++|.|...
T Consensus 104 ~eev~~g~~~~g~~~~e~~~~~~~~l~~vgl~~~~~~~~p~~LSGGqkqRvaiA~aLa~~P~iLlLDEPTsgLDp~~~~~ 183 (286)
T PRK13641 104 LKDVEFGPKNFGFSEQEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKE 183 (286)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
T ss_conf 99999999986999899999999999976996455542913299999999999999974999999739734389999999
Q ss_pred ---HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCC-CHHHHHHHHHCCCCHHHHH
Q ss_conf ---889887635844077641157663303677788847873026158672321---001-3688998773586278899
Q gi|254780711|r 232 ---LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENF-FPDRIANRILGMGDVVSLV 304 (461)
Q Consensus 232 ---~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F-~p~~~~~riLGmgD~~~l~ 304 (461)
..+..++. +.|=+++|- | +..+...---|..+-.|+-+.|= |.| +|+.+...=|+-..+..|.
T Consensus 184 i~~ll~~l~~~-G~Tii~vtH-d--------~~~v~~~adrv~vm~~G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~~~ 253 (286)
T PRK13641 184 MMQIFKDYQKA-GHTVILVTH-N--------MDDVAEYADDVLVLEHGKLIKHASPKEIFSDSEWLKKHYLDEPATSRFA 253 (286)
T ss_pred HHHHHHHHHHC-CCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHH
T ss_conf 99999999963-999999915-9--------9999997999999989999997799999659999997799999399999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9874211267899888653104637999999999985114
Q gi|254780711|r 305 EKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIG 344 (461)
Q Consensus 305 e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~kmG 344 (461)
...++. --++....+|.+++.+.++.--|=|
T Consensus 254 ~~L~~~---------g~~~~~~~lt~~e~~~~l~~~l~~~ 284 (286)
T PRK13641 254 SKLEKG---------GFKFSENPLTIDELVDGIKNNLKGG 284 (286)
T ss_pred HHHHHC---------CCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 999975---------9999999879999999999996388
No 398
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.76 E-value=0.19 Score=31.24 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=28.1
Q ss_pred CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 084113357899972326679899999999999999999986
Q gi|254780711|r 389 ANPSIIKHSRKKRIAAGSGTNAAKINKLLKLHRQVAEMMHST 430 (461)
Q Consensus 389 ~~P~ll~~SR~~RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~ 430 (461)
.+|-|+++|=+.-|+-|.-.+.+||.+-++.-.-. ..+.++
T Consensus 422 Q~~~LF~gTI~eNi~~g~~~~~~~i~~a~~~a~l~-~~i~~l 462 (593)
T PRK10790 422 QDPVVLADTFLANVTLGRDISEEQVWQALETVQLA-ELARSL 462 (593)
T ss_pred CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHC
T ss_conf 66514565299997760023679999999997789-999857
No 399
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.75 E-value=0.051 Score=35.64 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=31.6
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH
Q ss_conf 10002588418996234433346889999999986148950782054221004
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA 144 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA 144 (461)
.+...++ -++.++|++||||||.+-=++..+.-..| .|.+-..|..+...
T Consensus 29 s~~i~~G--E~v~iiG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~i~~~~~ 78 (233)
T PRK11629 29 SFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDTPTSG-DVIFNGQPMSKLSS 78 (233)
T ss_pred EEEECCC--CEEEEECCCCCCHHHHHHHHHCCCCCCCE-EEEECCEECCCCCH
T ss_conf 8998899--89999999994099999999669999863-99999999886998
No 400
>PRK12739 elongation factor G; Reviewed
Probab=95.75 E-value=0.23 Score=30.62 Aligned_cols=136 Identities=22% Similarity=0.180 Sum_probs=75.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE-----CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8418996234433346889999999986148950782-----05422100477999985103474222332103689999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMA-----SLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAI 173 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv-----~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~ 173 (461)
+-.-|.++|--++||||.+=.|-++-.. -.+.+=+ .+|+ | ..||-+ ++.+.+. ++.
T Consensus 9 ~IRNi~IvaHvd~GKTTL~d~LL~~~g~--i~~~g~v~~g~~~~D~-~--~~E~eR------gITi~ss-----~~s--- 69 (693)
T PRK12739 9 KTRNIGIMAHIDAGKTTTTERILFYTGK--IHKIGEVHDGAATMDW-M--EQEQER------GITITSA-----ATT--- 69 (693)
T ss_pred HCEEEEEEECCCCCHHHHHHHHHHHCCC--CCCCCEECCCCCCCCC-C--HHHHHC------CCCEEEC-----EEE---
T ss_conf 8139999907998989999999997698--5657334389756878-0--999875------9867455-----277---
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---H--HHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999974158869983344222112468999999851385110003101112---2--568888988763584407764
Q gi|254780711|r 174 RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---Q--DAVHLARNFDKIVDLTGIILT 248 (461)
Q Consensus 174 ~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q--~a~~~a~~F~~~~~i~giIlT 248 (461)
+..++|-+=||||.|. .| -..|...-.+++ |-.++|+||.-| | ....| ++.+.++. =++++
T Consensus 70 -----~~~~~~~iNLIDTPGH--vD--F~~EV~~alrv~--DgalvvVDaveGV~~qT~~v~rq--a~~~~lp~-il~iN 135 (693)
T PRK12739 70 -----AFWKDHRINIIDTPGH--VD--FTIEVERSLRVL--DGAVAVFDAVSGVEPQSETVWRQ--ADKYGVPR-IVFVN 135 (693)
T ss_pred -----EEECCEEEEEEECCCC--CH--HHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHH--HHHCCCCE-EEEEE
T ss_conf -----8459989999949697--40--589999999984--87999997898876779999999--99869896-99997
Q ss_pred ECCCC-CCCCHHH-HHHHHHC
Q ss_conf 11576-6330367-7788847
Q gi|254780711|r 249 RMDGD-GRGGAAL-SMRTVTG 267 (461)
Q Consensus 249 KlD~~-akgG~al-s~~~~~~ 267 (461)
|+|-. +.....+ ++....+
T Consensus 136 KiDR~~ad~~~~~~~i~~~l~ 156 (693)
T PRK12739 136 KMDRIGADFFRVVEQIKDRLG 156 (693)
T ss_pred CCCCCCCCHHHHHHHHHHHHC
T ss_conf 978899998999999999858
No 401
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.74 E-value=0.16 Score=31.85 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=30.0
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 000258841899623443334688999999998614895078205422
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
+...++ .++.+||.+||||||.+-=|+.+|.-..|. |.+-..|..
T Consensus 35 ~~i~~G--e~vaIvG~sGsGKSTL~~ll~gl~~p~~G~-I~idg~~i~ 79 (226)
T cd03248 35 FTLHPG--EVTALVGPSGSGKSTVVALLENFYQPQGGQ-VLLDGKPIS 79 (226)
T ss_pred EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEEHH
T ss_conf 998299--999999999984999999996454678878-999999934
No 402
>PRK06749 replicative DNA helicase; Provisional
Probab=95.74 E-value=0.23 Score=30.60 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=72.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC------HHHHH
Q ss_conf 4189962344333468899999999861489507820542210047799--998510347422233210------36899
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ------SPEKI 171 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~------dp~~i 171 (461)
-..|.+.|=.|.|||+.+--+|....+ .|++|++.+..-- .+|| +.+|...+|+......+. +-..+
T Consensus 186 g~LiviaaRPsmGKTa~alnia~~~a~-~g~~v~~fSlEMs----~~~l~~R~ls~~s~v~~~~i~~~~~~~~~~~~~~~ 260 (428)
T PRK06749 186 GDFVVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMS----SKQLLKRMASCVGEVSGGRLKNPKHRFAMEDWEKV 260 (428)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHH
T ss_conf 868999627989768999999999996-4992799837899----99999999997549988886277677999999999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9999999974158869983344222112468999999851385110003101
Q gi|254780711|r 172 AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 172 ~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
..++... .+..+.|.||++..-. ++..+.+++.+.......+.|+|-
T Consensus 261 -~~a~~~l--~~~~l~i~d~~~~ti~--~i~~~~r~~~~~~g~~~~livIDY 307 (428)
T PRK06749 261 -SKAFAEI--GELPLEIYDNAGVTVQ--DIWMQTRKLKRKHGDKKVLIIVDY 307 (428)
T ss_pred -HHHHHHH--HCCCEEEECCCCCCHH--HHHHHHHHHHHHCCCCCEEEEEEH
T ss_conf -9999998--5596599758997679--999999999997499876999767
No 403
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=95.74 E-value=0.026 Score=37.91 Aligned_cols=167 Identities=19% Similarity=0.279 Sum_probs=93.2
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC----CC--HHHHH---HHHHHHC------C----
Q ss_conf 0258841899623443334688999999998614895078205422----10--04779---9998510------3----
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH----RP--AAQEQ---LRYLGEQ------I---- 155 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~----R~--aA~eQ---L~~~a~~------~---- 155 (461)
+..++..+|.+-|=-|-||+||++.+++-+.. .|+||+++.||-- |. +...| |.++.++ +
T Consensus 26 ~~~k~~~~IAiYGKGGIGKSTts~NlsAAlA~-~GkkVm~IGCDPKaDSTrlLlgG~~~~TVLd~~~~~~~~~e~v~~~d 104 (329)
T cd02033 26 PPTKKTQIIAIYGKGGIGKSFTLANLSYMMAQ-QGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGD 104 (329)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHH
T ss_conf 87544549999768843561688999999997-79969997888846033410589888409999987288644342501
Q ss_pred ------CCCCCCCCCCCHH--------HHHHHHHHHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf ------4742223321036--------899999999997--415886998334422211246899999985138511000
Q gi|254780711|r 156 ------QVDTLEVIPEQSP--------EKIAIRATQSAR--DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILL 219 (461)
Q Consensus 156 ------~v~~~~~~~~~dp--------~~i~~~a~~~a~--~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~l 219 (461)
||.+..+. +-.| +-.+.+-++... ..++|+|+.|.-|-----. ...=.+.-..+|+++
T Consensus 105 v~~~g~Gv~CvEsG-GPEPGvGCAGRGIItai~lLe~lg~~~~d~D~V~yDVLGDVVCGG-----FAmPiR~g~A~evyI 178 (329)
T cd02033 105 VCFKRDGVFAMELG-GPEVGRGCGGRGIIHGFELLEKLGFHDWDFDYVLLDFLGDVVCGG-----FGLPIARDMAQKVIV 178 (329)
T ss_pred EEECCCCEEEEECC-CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECC-----CCCCCCCCCCCEEEE
T ss_conf 78625998898667-999987678873013667877637752589999992245356646-----335335687628999
Q ss_pred CCCH--HCCHHHHHHH---HHHHHH---CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHH
Q ss_conf 3101--1122568888---988763---58440776411576633036777888478730
Q gi|254780711|r 220 VADA--LTGQDAVHLA---RNFDKI---VDLTGIILTRMDGDGRGGAALSMRTVTGKPIK 271 (461)
Q Consensus 220 V~da--~~Gq~a~~~a---~~F~~~---~~i~giIlTKlD~~akgG~als~~~~~~~PI~ 271 (461)
|.+. |.=-.|-|++ +.|.+. +.+.|+|..+-|++.- +=..+...|.|+.
T Consensus 179 VtSgE~MalyAANNI~~~i~~~a~~gg~vrl~GlI~N~~~~~~e---~e~fa~~~g~~~l 235 (329)
T cd02033 179 VGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTGE---AQAFAAHAGIPIL 235 (329)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH---HHHHHHHCCCCEE
T ss_conf 96780889998878999999998638971011598606887249---9999997199579
No 404
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.73 E-value=0.028 Score=37.60 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=53.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
..|+++|+-||||||-+-+|....-. .+..+.++. ++.......+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~-~~~~~t~~~---------------------~~~~~~~~~~------------- 50 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP-EGYPPTIGN---------------------LDPAKTIEPY------------- 50 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEE---------------------CCCCCEEECC-------------
T ss_conf 79999999999889999999647676-556761454---------------------0432036226-------------
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCHHCCHHHHHHH
Q ss_conf 4158869983344222112468999999851--3851100031011122568888
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSL--TNPHEILLVADALTGQDAVHLA 233 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~--~~p~e~~lV~da~~Gq~a~~~a 233 (461)
....+..++||+| .++++.+... ..++-.++|.|.+.-....+..
T Consensus 51 ~~~~~~~~~Dt~g--------q~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~ 97 (219)
T COG1100 51 RRNIKLQLWDTAG--------QEEYRSLRPEYYRGANGILIVYDSTLRESSDELT 97 (219)
T ss_pred CCCEEEEEEECCC--------HHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf 6600267676798--------6999998875043897899999762056578899
No 405
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.73 E-value=0.13 Score=32.55 Aligned_cols=45 Identities=24% Similarity=0.188 Sum_probs=29.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH
Q ss_conf 418996234433346889999999986148950782054221004779
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ 147 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQ 147 (461)
--.|.++|+|||||||.+--|+-.+.-..|. |-+ ...-|.|-++|
T Consensus 338 GeriaIvG~NGsGKSTLlk~L~G~l~p~~G~-i~~--~~~v~igy~~Q 382 (638)
T PRK10636 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGE-IGL--AKGIKLGYFAQ 382 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCCCE-EEE--CCCCCCCCCHH
T ss_conf 8479997478713889999972887888856-998--44443341107
No 406
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=95.72 E-value=0.047 Score=35.92 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=58.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC---------------CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 44333468899999999861489507820542---------------210047799998510347422233210368999
Q gi|254780711|r 108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDV---------------HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA 172 (461)
Q Consensus 108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt---------------~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~ 172 (461)
+-|+|||-++.-||.+|++ .|.+|++++=-- ..-.+=|-+ .+++..++|++.+.. -+
T Consensus 66 vGGTGKTP~vi~L~~~L~~-~G~k~~IlSRGYg~~~~~~~~v~~~~~~~~vGDEpl-lla~~~~~pV~V~~~---R~--- 137 (339)
T PRK01906 66 VGGTGKTPTVIALVDALRA-AGFTPGVVSRGYGAKVKAPTAVTPASRASDAGDEPL-LIARRTDAPVWVCPD---RV--- 137 (339)
T ss_pred ECCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCEEECCCCCHHHCCCHHH-HHHHCCCCEEEEECC---HH---
T ss_conf 6887577999999999997-699559985464555677666237864433176899-987435960898256---99---
Q ss_pred HHHHHHH--HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf 9999999--7415886998334422211246899999985138511000310111
Q gi|254780711|r 173 IRATQSA--RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT 225 (461)
Q Consensus 173 ~~a~~~a--~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~ 225 (461)
+|.+.+ ...++|+||.|-.=.| .. +.+|--++|+|+..
T Consensus 138 -~~~~~l~~~~~~~dvIIlDDGfQh-~~-------------l~rDl~Ivl~d~~~ 177 (339)
T PRK01906 138 -AAAQALLAAHPEVDVIVSDDGLQH-YR-------------LARDVEIVVFDHRL 177 (339)
T ss_pred -HHHHHHHHHCCCCCEEEECCCCCC-CC-------------CCCCEEEEEECCCC
T ss_conf -999999974889988995685313-33-------------46875999987877
No 407
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.72 E-value=0.057 Score=35.23 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=32.6
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC----CCEEEECCC
Q ss_conf 2588418996234433346889999999986148----950782054
Q gi|254780711|r 96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK----KKILMASLD 138 (461)
Q Consensus 96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~----~kV~lv~~D 138 (461)
...+|.++.++|+.|+||||-+--|..+|.++.- -.+-+|+.-
T Consensus 35 ~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K 81 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGK 81 (225)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf 89999699998989977889999999998544375578887999468
No 408
>KOG2004 consensus
Probab=95.70 E-value=0.18 Score=31.49 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=38.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
-.++.|+||.|+|||.-.--+|+-+ .++-.+.-+.. --|+-.+-+.+ ..+.|.=|-.++ +++...
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~AL-nRkFfRfSvGG-------~tDvAeIkGHR------RTYVGAMPGkiI-q~LK~v 502 (906)
T KOG2004 438 GKILCFVGPPGVGKTSIAKSIARAL-NRKFFRFSVGG-------MTDVAEIKGHR------RTYVGAMPGKII-QCLKKV 502 (906)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHH-CCCEEEEECCC-------CCCHHHHCCCC------EEEECCCCHHHH-HHHHHH
T ss_conf 8379986899877321899999984-87469985366-------34277642542------110014884899-999861
Q ss_pred HHCCCCEEEEE
Q ss_conf 74158869983
Q gi|254780711|r 180 RDGGYDAVILD 190 (461)
Q Consensus 180 ~~~~~D~iiiD 190 (461)
+-++ -++|||
T Consensus 503 ~t~N-PliLiD 512 (906)
T KOG2004 503 KTEN-PLILID 512 (906)
T ss_pred CCCC-CEEEEE
T ss_conf 7788-658853
No 409
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.70 E-value=0.22 Score=30.82 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 89962344333468899999999861489507820542
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
.+.+||++||||||-+.=|..+|.-..|. |.+-..|.
T Consensus 343 ~vaIVG~SGsGKSTLl~LL~g~y~p~~G~-I~idg~di 379 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGD-IRFHDIPL 379 (569)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCC-EEEECEEC
T ss_conf 89987999998799999999776426787-46501013
No 410
>pfam00406 ADK Adenylate kinase.
Probab=95.70 E-value=0.023 Score=38.25 Aligned_cols=102 Identities=17% Similarity=0.256 Sum_probs=52.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHHHHHHH
Q ss_conf 6234433346889999999986148950782054221004779999851034742223---3210368999999999974
Q gi|254780711|r 105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV---IPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~---~~~~dp~~i~~~a~~~a~~ 181 (461)
++|+.||||+|-+.+||..| +. +-+-+.|.+|..+-.+-. +++++.- ++.. .+..-...++.+++...
T Consensus 1 i~G~PGsGKgTqa~~La~~~----~~-~~is~GdllR~~~~~~s~-~g~~i~~-~i~~G~lvpd~i~~~l~~~~l~~~-- 71 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKY----GI-VHLSTGDLLRAEVKSGTE-LGKEAKE-YMDKGELVPDEVVVGLVKERLEQN-- 71 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHH----CC-EEECHHHHHHHHHHCCCH-HHHHHHH-HHHCCCCCCHHHHHHHHHHHHCCC--
T ss_conf 91889898599999999985----99-067699999999862887-9999999-998699543099999999997074--
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 158869983344222112468999999851385110
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEI 217 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~ 217 (461)
....-+|+|=--|.......++++-. ....|+.+
T Consensus 72 ~~~~g~iLDGfPRt~~Qa~~l~~~l~--~~~~~~~V 105 (186)
T pfam00406 72 DCKNGFLLDGFPRTVPQAEALEEMLE--YGIKLDYV 105 (186)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHH--CCCCCCEE
T ss_conf 55486687379898999999999997--49987779
No 411
>PRK02496 adk adenylate kinase; Provisional
Probab=95.69 E-value=0.042 Score=36.23 Aligned_cols=40 Identities=30% Similarity=0.441 Sum_probs=30.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf 899623443334688999999998614895078205422100477
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE 146 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e 146 (461)
.|+++|+.||||+|-+.+||.+| +. +-+.+.|.+|...-+
T Consensus 3 riillG~PGSGKgTqa~~L~~~~----~~-~his~GdllR~~~~~ 42 (185)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL----QI-PHISTGDILRQAITE 42 (185)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CC-EEECHHHHHHHHHHC
T ss_conf 89997999999899999999996----99-778888999999874
No 412
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.68 E-value=0.02 Score=38.74 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=32.2
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf 258841899623443334688999999998614895078205422100
Q gi|254780711|r 96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPA 143 (461)
Q Consensus 96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~a 143 (461)
...+|.+|.|.|+.||||||-+-.|...|.. .|+++.+.-.|..|.|
T Consensus 439 ~g~~~~~iw~tGlsgsGKstiA~~le~~L~~-~g~~~~~LDGd~lR~g 485 (613)
T PRK05506 439 KGQKPATVWFTGLSGSGKSTIANLVERRLHA-LGRHTYVLDGDNVRHG 485 (613)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHHH
T ss_conf 4899769999778989747999999999997-7998799880898741
No 413
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=95.67 E-value=0.15 Score=32.15 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=84.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999998718774210002588418996234433346889999999986148950782054221004779999851034
Q gi|254780711|r 77 IVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ 156 (461)
Q Consensus 77 iv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~ 156 (461)
-+.++++..|......... ...|..|.+||=.-+||.|-+-+|.. +.+ + +|+ +
T Consensus 430 dLld~i~~~l~~~~~~~~~-~~~~~rIAIIGRPNVGKSTLiN~Llg-----eeR-~-IVs-------------------~ 482 (714)
T PRK09518 430 DLLDVVLDSLKQHERTSGY-LSGLRRVALVGRPNVGKSSLLNQLTR-----EER-A-VVN-------------------D 482 (714)
T ss_pred HHHHHHHHHCCCCCCCCCC-CCCCCEEEEECCCCCCHHHHHHHHHC-----CCE-E-EEC-------------------C
T ss_conf 9999999658888754343-46773588866998878999999968-----975-8-856-------------------8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC---CC--HHHHHHHHHHHHHHCCCCCCCCCCCHHCC---HH
Q ss_conf 742223321036899999999997415886998334422---21--12468999999851385110003101112---25
Q gi|254780711|r 157 VDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN---HI--NDSLMQEISEIKSLTNPHEILLVADALTG---QD 228 (461)
Q Consensus 157 v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~---~~--d~~lm~El~~i~~~~~p~e~~lV~da~~G---q~ 228 (461)
+| ..-.||+++. +.-++..++||||||-- +. ..+...-++.+..+-..|-++||+||+-| ||
T Consensus 483 ia----GTTRDsId~~------~~~~g~~~~lIDTAGiRkk~k~~~~iE~~S~~rt~~aI~~adVvllviDA~~git~QD 552 (714)
T PRK09518 483 LA----GTTRDPVDEI------VNIDGKDWLFVDTAGIRRKQKKLTGAEYYASLRTQAAIERCELALILFDASQPISEQD 552 (714)
T ss_pred CC----CCEECEEEEE------EEECCEEEEEEECHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHH
T ss_conf 89----8502305567------9999978999986001524432543227999999998865889999986776752899
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCC-HHH------HHHHHHCCCHHHEEC
Q ss_conf 68888988763584407764115766330-367------778884787302615
Q gi|254780711|r 229 AVHLARNFDKIVDLTGIILTRMDGDGRGG-AAL------SMRTVTGKPIKAIGT 275 (461)
Q Consensus 229 a~~~a~~F~~~~~i~giIlTKlD~~akgG-~al------s~~~~~~~PI~fig~ 275 (461)
..++..-.+.=---=+++.|.|--..-- ..+ ........|+.||+.
T Consensus 553 -~~Ia~~i~~~gk~~IivvNKWDLv~~~~~~~~~~~i~~~l~~~~~apiv~iSA 605 (714)
T PRK09518 553 -LRVMSMAVDAGRALVLAFNKWDLMDEFRRQRLEREIDTEFDRVMWAERVNISA 605 (714)
T ss_pred -HHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf -99999999859937999961430686689999999997563689998899966
No 414
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.67 E-value=0.026 Score=37.90 Aligned_cols=103 Identities=20% Similarity=0.168 Sum_probs=54.3
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 00025884189962344333468899999999861489507820542210047799998510347422233210368999
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA 172 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~ 172 (461)
+...++ .++.++|+||+||||.+-=|+..++...|. |-+ .+..+.+=+.| -++.---.
T Consensus 21 ~~i~~g--e~~~l~G~NGsGKTTl~~~l~G~~~~~~G~-i~~--~~~~~i~y~~Q---------------LSgGqkqr-- 78 (144)
T cd03221 21 LTINPG--DRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTW--GSTVKIGYFEQ---------------LSGGEKMR-- 78 (144)
T ss_pred EEECCC--CEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEE--CCCCEEEEEHH---------------CCHHHHHH--
T ss_conf 998799--999999899984999999984898898509-999--99608998700---------------79999999--
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999999741588699833442221124689999998513851100031
Q gi|254780711|r 173 IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVA 221 (461)
Q Consensus 173 ~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~ 221 (461)
=++..+-....+++|.|-+= .+.|..-.+++.+..+..+ -+++++
T Consensus 79 -~~la~al~~~p~iliLDEPt-~~LD~~~~~~i~~~l~~~~--~tii~v 123 (144)
T cd03221 79 -LALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEYP--GTVILV 123 (144)
T ss_pred -HHHHHHHCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHCC--CEEEEE
T ss_conf -99999972599899995775-5589999999999999709--999999
No 415
>PRK13766 Hef nuclease; Provisional
Probab=95.66 E-value=0.25 Score=30.40 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=67.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHHH
Q ss_conf 99623443334688999999998614895078205422100477999985103474222--3321036899999999997
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLE--VIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~--~~~~~dp~~i~~~a~~~a~ 180 (461)
.++|=++|+|||.-++.+++++....+.|+++. +.| ||=+..|.+.+.+.+++|-.. ...|..+.+ .+.-.+ .
T Consensus 32 tiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFL-aPT-~pLV~Qq~~~~~~~l~i~~~~i~~ltG~~~~~--~r~~~w-~ 106 (764)
T PRK13766 32 TLVVLPTGLGKTAIALLVIAERLQKYGGKVLIL-APT-KPLVEQHAEFFRKFLNIDPEKIVVLTGEISPE--KRAALW-E 106 (764)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE-CCC-HHHHHHHHHHHHHHCCCCCCEEEEEECCCCHH--HHHHHH-C
T ss_conf 899959986689999999999997489889998-588-88999999999997099955289998887827--689986-0
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCC-H--HCCHHHHH-HHHHHHH
Q ss_conf 415886998334422211246899999985138511-000310-1--11225688-8898876
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHE-ILLVAD-A--LTGQDAVH-LARNFDK 238 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e-~~lV~d-a--~~Gq~a~~-~a~~F~~ 238 (461)
.+ -|+|-|+..+.+| |. ...+.++. .+||+| | .+|..+.. +++.|.+
T Consensus 107 --~~-~Viv~TPQvl~nd--L~------~g~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~ 158 (764)
T PRK13766 107 --KA-KVIVATPQVIEND--LL------AGRISLEDVSLLIFDEAHRAVGNYAYVFIAERYHE 158 (764)
T ss_pred --CC-CEEEECCHHHHHH--HH------HCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf --79-9999990899999--98------29867888228999746666677628999999985
No 416
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.66 E-value=0.19 Score=31.19 Aligned_cols=127 Identities=24% Similarity=0.246 Sum_probs=57.0
Q ss_pred EEEECCCCCCHHHHHH-HHHHHHHHH--CCCCEEEECCCCCCCHHH---HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9962344333468899-999999861--489507820542210047---7999985103474222332103689999999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTA-KIAYHLKTL--KKKKILMASLDVHRPAAQ---EQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 103 IllvGl~GsGKTTT~a-KLA~~~~~~--~~~kV~lv~~Dt~R~aA~---eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
++..-++|||||.+-. =+..++... .+..-++|-+-| |--|. +..+.+++..++.+.....+.+...- .
T Consensus 39 vi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PT-rELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~----~ 113 (203)
T cd00268 39 VIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT-RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQ----I 113 (203)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHH----H
T ss_conf 8997579972228888699999861667689669999687-9999999999998505798389998389887999----9
Q ss_pred HHHHHCCCCEEEEECCCCCCC------------------------HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHH
Q ss_conf 999741588699833442221------------------------12468999999851385110003101112256888
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHI------------------------NDSLMQEISEIKSLTNPHEILLVADALTGQDAVHL 232 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~------------------------d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~ 232 (461)
+.. .++. -|+|-|+||+.. |....+++..|.+...++--.+...||...+..+.
T Consensus 114 ~~l-~~~~-~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD~ll~~gf~~~i~~I~~~l~~~~Q~~lfSAT~~~~v~~l 191 (203)
T cd00268 114 RKL-KRGP-HIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDL 191 (203)
T ss_pred HHH-HCCC-EEEEECCHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
T ss_conf 998-5387-59996818999999848865132248999858888747769999999985896777999980499889999
Q ss_pred HHHH
Q ss_conf 8988
Q gi|254780711|r 233 ARNF 236 (461)
Q Consensus 233 a~~F 236 (461)
++.|
T Consensus 192 ~~~~ 195 (203)
T cd00268 192 ARKF 195 (203)
T ss_pred HHHH
T ss_conf 9997
No 417
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=95.65 E-value=0.19 Score=31.27 Aligned_cols=144 Identities=24% Similarity=0.315 Sum_probs=77.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
+|.++|-.-+||+|---+|. +++.++|+ |+ .|+.- |... ..+.-
T Consensus 1 ~VaIvGrpNVGKStLfN~L~-------~~~~aIv~-~~---------------~G~TR-------D~~~------~~~~~ 44 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLT-------GKRDAIVA-DT---------------PGVTR-------DRKY------GDAEW 44 (429)
T ss_pred CEEEECCCCCCHHHHHHHHH-------CCCEEECC-CC---------------CCCCC-------CCEE------EEEEE
T ss_conf 98999999987899999987-------88617615-98---------------99887-------7337------99999
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC-CCCCCCCCCCHHCCH--HHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 15886998334422211246899999-98513-851100031011122--568888988763584407764115766330
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISE-IKSLT-NPHEILLVADALTGQ--DAVHLARNFDKIVDLTGIILTRMDGDGRGG 257 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~-i~~~~-~p~e~~lV~da~~Gq--~a~~~a~~F~~~~~i~giIlTKlD~~akgG 257 (461)
.++.+.||||||-...++.+-+.+.. ...++ +.|-++||+||..|- +-.+.++-..+.-.--=+++-|+|+.. .-
T Consensus 45 ~~~~~~liDT~G~~~~~~~~~~~~~~q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~-~~ 123 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK-ED 123 (429)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-HH
T ss_conf 99079999898989874378999999999999867999999857768986799999999871997899998346753-14
Q ss_pred HHHHHHHHHCCC-HHHEEC--CCCCCCC
Q ss_conf 367778884787-302615--8672321
Q gi|254780711|r 258 AALSMRTVTGKP-IKAIGT--GEKINDL 282 (461)
Q Consensus 258 ~als~~~~~~~P-I~fig~--GE~~~dl 282 (461)
..++-.+..|.. +.+|+. |..+++|
T Consensus 124 ~~~~ef~~LG~~~~i~iSA~h~~Gi~~L 151 (429)
T TIGR03594 124 AVAAEFYSLGFGEPIPISAEHGRGIGDL 151 (429)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf 5699999836898688742046799999
No 418
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.63 E-value=0.098 Score=33.45 Aligned_cols=137 Identities=17% Similarity=0.233 Sum_probs=71.3
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE--ECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9999871877421000258841899623443334688999999998614895078--20542210047799998510347
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILM--ASLDVHRPAAQEQLRYLGEQIQV 157 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~l--v~~Dt~R~aA~eQL~~~a~~~~v 157 (461)
|.|.+++... .+-.-|-++|--|+||||++-.|-++--. =.+++.- ..+|. + ..||-+ |+
T Consensus 8 ~~~~~~m~~p--------e~IRNI~IiaHvdaGKTTLtE~lL~~sg~-i~~~~~~~~t~~D~-~--~~E~eR------gI 69 (730)
T PRK07560 8 EKILELMRNP--------EQIRNIGIVAHIDHGKTTLSDNLLAGAGM-ISEELAGKQLALDY-D--EEEQAR------GI 69 (730)
T ss_pred HHHHHHHHCH--------HHCCEEEEECCCCCCHHHHHHHHHHHCCC-CCCCCCCCCEECCC-H--HHHHHC------CC
T ss_conf 9999986187--------63528999937998989999999996499-86534798641788-5--999972------98
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHH
Q ss_conf 42223321036899999999997415886998334422211246899999985138511000310111225-----6888
Q gi|254780711|r 158 DTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHL 232 (461)
Q Consensus 158 ~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~ 232 (461)
.+.+.. +.+.+ ....+.|-+=||||.|- . +-..|...-.+++ |-.++|+||.-|=. ...|
T Consensus 70 TI~sa~-----~sl~~----~~~~~~~~INlIDTPGh--~--DF~~Ev~~aLrv~--DgAvvVvdav~GV~~qTe~v~rq 134 (730)
T PRK07560 70 TIKAAN-----VSMVH----EYEGKEYLINLIDTPGH--V--DFGGDVTRAMRAV--DGAIVVVDAVEGVMPQTETVLRQ 134 (730)
T ss_pred CEEECC-----EEEEE----EECCCCEEEEEECCCCC--C--HHHHHHHHHHHHH--CEEEEEEECCCCCCCHHHHHHHH
T ss_conf 575211-----02898----75698378999819697--3--0599999999885--87899997898877318999999
Q ss_pred HHHHHHHCCCCCEEEEECCC
Q ss_conf 89887635844077641157
Q gi|254780711|r 233 ARNFDKIVDLTGIILTRMDG 252 (461)
Q Consensus 233 a~~F~~~~~i~giIlTKlD~ 252 (461)
| ....++. =++++|+|-
T Consensus 135 a--~~~~~p~-ilfINKmDR 151 (730)
T PRK07560 135 A--LEERVRP-VLFINKVDR 151 (730)
T ss_pred H--HHCCCCE-EEEEECCCC
T ss_conf 9--8779997-999868662
No 419
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.63 E-value=0.056 Score=35.31 Aligned_cols=86 Identities=30% Similarity=0.364 Sum_probs=44.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
|+++|..||||||-+-++.. +.... ++ .| .+|+.+... ...
T Consensus 2 I~llG~~~~GKTsll~~~~~-----~~f~~-----~~-~p-----------Tig~~~~~i-----------------~~~ 42 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG-----GQFSE-----DT-IP-----------TVGFNMRKV-----------------TKG 42 (159)
T ss_pred EEEECCCCCCHHHHHHHHHC-----CCCCC-----CC-CC-----------CCCEEEEEE-----------------EEC
T ss_conf 89999999869999999975-----99988-----61-67-----------325058999-----------------989
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH
Q ss_conf 5886998334422211246899999985138511000310111225688889
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR 234 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~ 234 (461)
++.+-|.||||.-. +..+...+ .-+-+-+++|+|++- .+.++.++
T Consensus 43 ~~~l~iwDt~G~e~-----~~~l~~~y-~~~~~~ii~V~D~sd-~~s~~~~~ 87 (159)
T cd04159 43 NVTLKVWDLGGQPR-----FRSMWERY-CRGVNAIVYVVDAAD-RTALEAAK 87 (159)
T ss_pred CEEEEEEECCCHHH-----HHHHHHHH-HCCCCEEEECCCCCC-HHHHHHHH
T ss_conf 99999997983587-----79999987-468636875157787-88999999
No 420
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=95.62 E-value=0.11 Score=32.95 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=63.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHH
Q ss_conf 884189962344333468899999999861489507820542--21004779999851034742--22332103689999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV--HRPAAQEQLRYLGEQIQVDT--LEVIPEQSPEKIAI 173 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt--~R~aA~eQL~~~a~~~~v~~--~~~~~~~dp~~i~~ 173 (461)
.-|+.|.| |.|....++.+ ++..+.++|++|+ |. .|.|-++++...-+..++.+ |......-+.+.+.
T Consensus 7 ~~Pt~i~f----G~g~~~~l~~~---~~~~G~k~~lvvt-~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~ 78 (383)
T PRK09860 7 FIPSVNVI----GADSLTDAMNM---MADYGFTRTLIVT-DNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVA 78 (383)
T ss_pred ECCCCEEE----CCCHHHHHHHH---HHHCCCCEEEEEC-CCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf 58981498----83899999999---9982998799982-8456657469999999987699589968952796999999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 99999974158869983344222112
Q gi|254780711|r 174 RATQSARDGGYDAVILDTAGRNHIND 199 (461)
Q Consensus 174 ~a~~~a~~~~~D~iiiDTaGR~~~d~ 199 (461)
++++.++..++|+|| =--|-+..|.
T Consensus 79 ~~~~~~r~~~~D~iv-avGGGS~iD~ 103 (383)
T PRK09860 79 AGLKLLKENNCDSVI-SLGGGSPHDC 103 (383)
T ss_pred HHHHHHHHCCCCEEE-EECCCCHHHH
T ss_conf 999999873999999-9389622678
No 421
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=95.61 E-value=0.056 Score=35.32 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=19.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8418996234433346889999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYH 123 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~ 123 (461)
-|.-|||+||+|||||--+-.||..
T Consensus 49 ~pkNILmIGPTGvGKTeIARrLAkl 73 (442)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (442)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 6431688788886678999999998
No 422
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.012 Score=40.29 Aligned_cols=167 Identities=19% Similarity=0.143 Sum_probs=84.5
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 00025884189962344333468899999999861489507820542210047799998510347422233210368999
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA 172 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~ 172 (461)
+.+.-..-.|.-+.|+||+||||+.-=||..+.-..| +|.+..+|+.|-.. .+-.++||-++...--.+ -.+
T Consensus 21 VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G-~v~idg~d~~~~p~-----~vrr~IGVl~~e~glY~R--lT~ 92 (245)
T COG4555 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSG-KVTIDGVDTVRDPS-----FVRRKIGVLFGERGLYAR--LTA 92 (245)
T ss_pred EEEEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCCC-EEEEEECCCCCCHH-----HHHHHCCEECCCCCHHHH--HHH
T ss_conf 2578506649998768988712379999983258886-49984002101718-----775202131377670355--308
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH--------------------HHHHHHCCCCCCCCCCCH-HCCHHHH-
Q ss_conf 999999974158869983344222112468999--------------------999851385110003101-1122568-
Q gi|254780711|r 173 IRATQSARDGGYDAVILDTAGRNHINDSLMQEI--------------------SEIKSLTNPHEILLVADA-LTGQDAV- 230 (461)
Q Consensus 173 ~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El--------------------~~i~~~~~p~e~~lV~da-~~Gq~a~- 230 (461)
++-+.+|.. -||+-=.++.-|. ++|+++| -.|.+++--+-.++|+|- ++|-|..
T Consensus 93 rEnl~~Fa~-L~~l~~~~~kari---~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~ 168 (245)
T COG4555 93 RENLKYFAR-LNGLSRKEIKARI---AELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168 (245)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH
T ss_conf 999999999-9624026789999---999988675989988876414005788999999843987699768987742787
Q ss_pred -HHHHHHHHHCCCC--CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC
Q ss_conf -8889887635844--077641157663303677788847873026158672
Q gi|254780711|r 231 -HLARNFDKIVDLT--GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI 279 (461)
Q Consensus 231 -~~a~~F~~~~~i~--giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~ 279 (461)
...+.|-.+..-. -+|++-- +++=+.+.---+.-+-.||.+
T Consensus 169 ~r~~~dfi~q~k~egr~viFSSH--------~m~EvealCDrvivlh~Gevv 212 (245)
T COG4555 169 RRKFHDFIKQLKNEGRAVIFSSH--------IMQEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred HHHHHHHHHHHHCCCCEEEEECC--------CHHHHHHHHHEEEEEECCCEE
T ss_conf 99999999985257948999613--------179999861358997468089
No 423
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=95.60 E-value=0.11 Score=33.20 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEECC-CCCCCHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 3334688999999998614895078205-4221004779999851034742--223321036899999999997415886
Q gi|254780711|r 110 GSGKTTTTAKIAYHLKTLKKKKILMASL-DVHRPAAQEQLRYLGEQIQVDT--LEVIPEQSPEKIAIRATQSARDGGYDA 186 (461)
Q Consensus 110 GsGKTTT~aKLA~~~~~~~~~kV~lv~~-Dt~R~aA~eQL~~~a~~~~v~~--~~~~~~~dp~~i~~~a~~~a~~~~~D~ 186 (461)
|.| .+.+|...++..+.+++++|+- ...+.|.++++...-+..++++ |......-+.+.+.++++.+++.++|.
T Consensus 13 G~g---~l~~l~~~~~~~G~k~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~vf~~v~pnP~~~~V~~~~~~~r~~~~D~ 89 (381)
T PRK10624 13 GRG---AVGALTDEVKRRGYHKALIVTDKTLVQCGVVAKVTDKLDAAGLAYEIYDGVKPNPTISVVKEGLEVFQASGADY 89 (381)
T ss_pred CCC---HHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 976---99999999997499879999696545563699999999876983999889258989999999999998649998
Q ss_pred EEEECCCCCCCH
Q ss_conf 998334422211
Q gi|254780711|r 187 VILDTAGRNHIN 198 (461)
Q Consensus 187 iiiDTaGR~~~d 198 (461)
|| =--|-+..|
T Consensus 90 Ii-avGGGSviD 100 (381)
T PRK10624 90 LI-AIGGGSPQD 100 (381)
T ss_pred EE-EECCCHHHH
T ss_conf 99-808940888
No 424
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.60 E-value=0.034 Score=36.95 Aligned_cols=132 Identities=22% Similarity=0.376 Sum_probs=61.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
|+++|..||||||-+-+|. . +. . . ++ -| .+++.+... .-+
T Consensus 2 i~ilG~~~vGKTsll~~l~----~--~~-~--~--~~-~p-----------Tig~~~~~i-----------------~~~ 41 (158)
T cd00878 2 ILILGLDGAGKTTILYKLK----L--GE-V--V--TT-IP-----------TIGFNVETV-----------------EYK 41 (158)
T ss_pred EEEECCCCCCHHHHHHHHH----C--CC-C--C--CC-CC-----------EECCCEEEE-----------------EEC
T ss_conf 9999999998899999995----3--99-8--8--74-45-----------607408999-----------------848
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHHHHC---CCC----CEEEEECCCCC
Q ss_conf 5886998334422211246899999985138511000310111225688889-887635---844----07764115766
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR-NFDKIV---DLT----GIILTRMDGDG 254 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~~~~---~i~----giIlTKlD~~a 254 (461)
++.+.|.||+|.... ..+.... .-+.+-+++|+|++- .+.++.++ .+.+.+ ... =++.+|.|-..
T Consensus 42 ~~~l~iwDt~G~~~~-----~~~~~~y-~~~a~~~i~V~D~t~-~~s~~~~~~~~~~~~~~~~~~~~piliv~NK~Dl~~ 114 (158)
T cd00878 42 NVSFTVWDVGGQDKI-----RPLWKHY-YENTNGIIFVVDSSD-RERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred CEEEEEEECCCCCCC-----CHHHHHH-HCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf 899999988997221-----4489987-276877689983798-889999999999998660557653898760547665
Q ss_pred -C----CCHHHHHHHHHCCCHHHEE----CCCCCCC
Q ss_conf -3----3036777888478730261----5867232
Q gi|254780711|r 255 -R----GGAALSMRTVTGKPIKAIG----TGEKIND 281 (461)
Q Consensus 255 -k----gG~als~~~~~~~PI~fig----~GE~~~d 281 (461)
+ --..+......+.++.|+. +||.+++
T Consensus 115 ~~~~~ei~~~l~~~~~~~~~~~~~~~SAktg~gI~e 150 (158)
T cd00878 115 ALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf 789999999985875107998999998887929899
No 425
>PRK12736 elongation factor Tu; Reviewed
Probab=95.57 E-value=0.0043 Score=43.79 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=70.5
Q ss_pred CCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 258841-8996234433346889999999986148950782054221004779999851034742223321036899999
Q gi|254780711|r 96 NAPSPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR 174 (461)
Q Consensus 96 ~~~~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~ 174 (461)
...+|+ .|.++|-=-+||||.++-|...+... ++.-+--. ...|+++.=- .-|+.+-..
T Consensus 7 ~~~k~~~ni~~~GHVD~GKSTL~g~L~~~~~~~-~~~~~~~~------~~~D~~~eEr-~rGiTid~~------------ 66 (394)
T PRK12736 7 ERSKPHVNIGTIGHVDHGKTTLTAAITKVLAER-GLAQAKDY------ASIDAAPEEK-ARGITINTA------------ 66 (394)
T ss_pred CCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHC-CCCHHHHH------HHHCCCHHHH-CCCCEEEEE------------
T ss_conf 789987499999512884898998975045450-65102222------3311665562-478217841------------
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHH---HHHHCCCCC-EE-EEE
Q ss_conf 9999974158869983344222112468999999851385110003101112256888898---876358440-77-641
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARN---FDKIVDLTG-II-LTR 249 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~---F~~~~~i~g-iI-lTK 249 (461)
..++..+++.+.+||++|--..=.++ |..+...|-.+||+||..|-- .|.+. ....+++.. +| +||
T Consensus 67 -~~~~~t~~~~~~~iD~PGH~~fi~nm------i~Ga~~~D~alLVV~A~~G~~--~QT~EHl~l~~~lgv~~~IV~vnK 137 (394)
T PRK12736 67 -HVEYETEKRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVAATDGPM--PQTREHILLARQVGVPYIVVFLNK 137 (394)
T ss_pred -EEEEECCCEEEEEEECCCCHHHHCCE------EEEECCCCEEEEEEECCCCCH--HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf -89997288369998889725431104------443534665899998587746--779999999998299915999988
Q ss_pred CCCCC
Q ss_conf 15766
Q gi|254780711|r 250 MDGDG 254 (461)
Q Consensus 250 lD~~a 254 (461)
+|-..
T Consensus 138 ~D~v~ 142 (394)
T PRK12736 138 VDLVD 142 (394)
T ss_pred CCCCC
T ss_conf 78998
No 426
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.57 E-value=0.11 Score=33.14 Aligned_cols=53 Identities=26% Similarity=0.281 Sum_probs=33.3
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC-----CCCCCCHHHHH
Q ss_conf 100025884189962344333468899999999861489507820-----54221004779
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS-----LDVHRPAAQEQ 147 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~-----~Dt~R~aA~eQ 147 (461)
.+...++ -++-++|+|||||||.+-=++..+.-..|. |.+-. .|.++.+..+.
T Consensus 26 s~~v~~G--Ei~~iiG~nGaGKSTLl~~i~G~~~p~~G~-I~~~g~~~~~~~~~~~~~~~~ 83 (258)
T PRK11701 26 SFDLYPG--EVLGIVGESGSGKTTLLNALSARLAPDAGE-VHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred EEEECCC--CEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCCCCCCCHHHCCHHHH
T ss_conf 7788799--799998889988999999985678888873-997461157677344599999
No 427
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.57 E-value=0.041 Score=36.33 Aligned_cols=89 Identities=22% Similarity=0.128 Sum_probs=48.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
-++-++|+||+||||++-=|+-.++-..|. +-+ |-.++.-..|- +. + +..+.- +-++..+-
T Consensus 26 Eiv~ilGpNGaGKSTllk~i~G~l~p~~G~-i~~---~g~~~~~~pq~--------~~-L-SGGqrQ-----Rv~iAral 86 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDN-DEW---DGITPVYKPQY--------ID-L-SGGELQ-----RVAIAAAL 86 (177)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC-EEE---CCCCEECCCCC--------CC-C-CHHHHH-----HHHHHHHH
T ss_conf 899998999999999999996886788994-666---68612215551--------50-7-989999-----99999998
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 41588699833442221124689999998
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIK 209 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~ 209 (461)
..+.|++|.|-+= .+.|.....++.++.
T Consensus 87 ~~~p~lllLDEPt-s~LD~~~r~~i~~~i 114 (177)
T cd03222 87 LRNATFYLFDEPS-AYLDIEQRLNAARAI 114 (177)
T ss_pred HCCCCEEEECCCC-CCCCHHHHHHHHHHH
T ss_conf 2399999974886-538999999999999
No 428
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.55 E-value=0.016 Score=39.42 Aligned_cols=78 Identities=22% Similarity=0.176 Sum_probs=42.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233---210368999999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI---PEQSPEKIAIRATQS 178 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~---~~~dp~~i~~~a~~~ 178 (461)
-|+++|++||||||++.-|+.++-. ..++..+ -|++-. .|. ...-+.+.... .+..+.. ..+++..
T Consensus 27 nIlIsG~tGSGKTTll~al~~~i~~--~~rivti-Ed~~El----~l~---~~~~v~l~~~~~~~~~~~~~~-~~~li~~ 95 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPP--DERIITI-EDTAEL----QLP---HPNWVRLVTRPGNVEGSGEVT-MADLLRS 95 (186)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCC--CCCEEEE-CCCHHH----CCC---CCCEEEEEEECCCCCCCCEEC-HHHHHHH
T ss_conf 8999899999899999999961334--5645984-153540----477---775688886046457865034-9999887
Q ss_pred HHHCCCCEEEEE
Q ss_conf 974158869983
Q gi|254780711|r 179 ARDGGYDAVILD 190 (461)
Q Consensus 179 a~~~~~D~iiiD 190 (461)
+-..+-|.|+|-
T Consensus 96 aLR~~pd~iivG 107 (186)
T cd01130 96 ALRMRPDRIIVG 107 (186)
T ss_pred HCCCCCCEEECC
T ss_conf 366899737317
No 429
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=95.53 E-value=0.037 Score=36.68 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--HHHCCCCE
Q ss_conf 9999999987187742100025884189962344333468899999999--86148950
Q gi|254780711|r 76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHL--KTLKKKKI 132 (461)
Q Consensus 76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~--~~~~~~kV 132 (461)
.-|.++|...+.+. .+..+.++.|+.|+|||||+--||..+ .-.+++.+
T Consensus 29 ~eV~~WL~~~~~~~--------~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP 79 (490)
T pfam03215 29 AEVDHWLKAVFLES--------NKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNP 79 (490)
T ss_pred HHHHHHHHHHHCCC--------CCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCC
T ss_conf 99999999985477--------7731899879899889999999999759689981486
No 430
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=95.53 E-value=0.022 Score=38.45 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=43.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
|+|+|+.||||||-+.+|. ....+ ..-+ .-.+|+.+.. ...+
T Consensus 2 Il~lGl~~sGKTtil~~l~----~~~~~-~~~~----------------~pT~G~~~~~-----------------~~~~ 43 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLK----PENAQ-SQII----------------VPTVGFNVES-----------------FEKG 43 (162)
T ss_pred EEEECCCCCCHHHHHHHHH----CCCCC-CCCC----------------CCCCCEEEEE-----------------EEEC
T ss_conf 9999999998899999997----28987-5641----------------6850757899-----------------9839
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf 5886998334422211246899999985138511000310111
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT 225 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~ 225 (461)
++.+.+.||+|..... .+. .... -+.+-+++|+|++-
T Consensus 44 ~~~~~iwD~~G~~~~r-~lw---~~y~--~~~~~iI~VvDssd 80 (162)
T cd04157 44 NLSFTAFDMSGQGKYR-GLW---EHYY--KNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEEEEECCCCCCCC-HHH---HHHH--CCCCEEEEEEECCC
T ss_conf 9889999858874420-558---9870--56744899970763
No 431
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.53 E-value=0.14 Score=32.27 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=29.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 88418996234433346889999999986148950782054221
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
.+-.++.+||.+||||||-+-=|..+|.-..| .|.+-..|...
T Consensus 26 ~~G~~vaivG~sGsGKSTll~ll~gl~~p~~G-~I~i~g~di~~ 68 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVPENG-RVLVDGHDLAL 68 (237)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf 79999999999998599999999677657987-89999999551
No 432
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=95.52 E-value=0.021 Score=38.52 Aligned_cols=102 Identities=21% Similarity=0.374 Sum_probs=53.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
.|+++|+.||||||-+-+| +. +... ++ +|..+...+ ....
T Consensus 2 KililG~~~sGKTsll~~l----~~--~~~~-----~~-----------------~pT~g~~~~------------~~~~ 41 (159)
T cd04150 2 RILMVGLDAAGKTTILYKL----KL--GEIV-----TT-----------------IPTIGFNVE------------TVEY 41 (159)
T ss_pred EEEEECCCCCCHHHHHHHH----HC--CCCC-----CC-----------------CCCCCCCEE------------EEEE
T ss_conf 9999999999989999999----72--9967-----75-----------------896870179------------9998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCHHCCHHHHHHH-HHHHHHCC---CCC----EEEEECC
Q ss_conf 158869983344222112468999-9998513851100031011122568888-98876358---440----7764115
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEI-SEIKSLTNPHEILLVADALTGQDAVHLA-RNFDKIVD---LTG----IILTRMD 251 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~~~p~e~~lV~da~~Gq~a~~~a-~~F~~~~~---i~g----iIlTKlD 251 (461)
+++.+.+-||+|..... .+ ..+.+ +.+-+++|+|++--+ .+..+ +.|++.+. +.+ ++..|.|
T Consensus 42 ~~~~l~iwD~~G~~~~r-----~l~~~Y~~--~a~~iI~VvD~sd~~-~~~~~~~~l~~~l~~~~~~~~pili~~NK~D 112 (159)
T cd04150 42 KNISFTVWDVGGQDKIR-----PLWRHYFQ--NTQGLIFVVDSNDRE-RIGEAREELQRMLNEDELRDAVLLVFANKQD 112 (159)
T ss_pred CCEEEEEEECCCCCCCC-----HHHHHHCC--CCCEEEEEEECCCHH-HHHHHHHHHHHHHCCHHHCCCEEEEEEECCC
T ss_conf 98999999789972146-----56786476--873899999777778-9999999999996235336982999997566
No 433
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.50 E-value=0.013 Score=40.11 Aligned_cols=30 Identities=33% Similarity=0.679 Sum_probs=20.9
Q ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 210002588418996234433346889999999
Q gi|254780711|r 91 IELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYH 123 (461)
Q Consensus 91 ~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~ 123 (461)
..+.+..+ +..++|+|||||||.+.-++..
T Consensus 16 ~~i~f~~~---itaivG~NGaGKSTLl~~i~~~ 45 (204)
T cd03240 16 SEIEFFSP---LTLIVGQNGAGKTTIIEALKYA 45 (204)
T ss_pred CEEEEECC---EEEEECCCCCCHHHHHHHHHHC
T ss_conf 35885088---8999989999999999998630
No 434
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.50 E-value=0.038 Score=36.62 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=39.9
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 0025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r 94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV 157 (461)
Q Consensus 94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v 157 (461)
.+.-.+-.++.++|++||||||.+-=++..+....| .|.+-.-|...... .+++.+.+.++.
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~i~~~~~-~~~~~~~~~ig~ 86 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG-SIIFDGKDLLKLSR-RLRKIRRKEIQM 86 (228)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCH-HHHHHHCCCEEE
T ss_conf 789869989999999998699999999728987886-69989964677999-999972463799
No 435
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.50 E-value=0.19 Score=31.32 Aligned_cols=90 Identities=19% Similarity=0.162 Sum_probs=46.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH-HHHHHCCCCC----CCCCCC-CCHH------
Q ss_conf 189962344333468899999999861489507820542210047799-9985103474----222332-1036------
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL-RYLGEQIQVD----TLEVIP-EQSP------ 168 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL-~~~a~~~~v~----~~~~~~-~~dp------ 168 (461)
.-.++|-++|+|||..+++.+..+.. +|++++ .|..-.+|- +.+....+.+ .++... +..+
T Consensus 56 ~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv---~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~va 128 (442)
T COG1061 56 RRGVIVLPTGAGKTVVAAEAIAELKR----STLVLV---PTKELLDQWAEALKKFLLLNDEIGIYGGGEKELEPAKVTVA 128 (442)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCC----CEEEEE---CCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCEEEE
T ss_conf 86799967999889999999998269----889997---82999999999999734886766033687233577748999
Q ss_pred --HHHHHH-HHHHHHHCCCCEEEEECCCCCCC
Q ss_conf --899999-99999741588699833442221
Q gi|254780711|r 169 --EKIAIR-ATQSARDGGYDAVILDTAGRNHI 197 (461)
Q Consensus 169 --~~i~~~-a~~~a~~~~~D~iiiDTaGR~~~ 197 (461)
..+.++ .+..+..+.+++||+|=+-++..
T Consensus 129 t~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a 160 (442)
T COG1061 129 TVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA 160 (442)
T ss_pred EEHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 83897641555540356667599975245784
No 436
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=95.49 E-value=0.028 Score=37.58 Aligned_cols=125 Identities=22% Similarity=0.267 Sum_probs=62.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
|.++|==..||||.+..|.... +. .+.|.. ..|+=+-..-.++...|..... +.. ........+
T Consensus 3 V~iiGHVDhGKTTL~~~L~~~~----~~----~~~D~~---~eE~eRGITi~~g~~~~~~~~~-~~~----~~~~~~~~~ 66 (192)
T cd01889 3 VGVLGHVDSGKTSLAKALSEIA----ST----AAFDKN---PQSQERGITLDLGFSSFYVDKP-KHL----RELINPGEE 66 (192)
T ss_pred EEEEEECCCCHHHHHHHHHHHC----CC----HHHHCC---HHHHHCCCCEEEEEEEEEECCC-CCC----CCCCCCCCC
T ss_conf 9999761789999999998333----50----122135---8899779716710013785144-221----123234677
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---H--HHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 58869983344222112468999999851385110003101112---2--5688889887635844077641157
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---Q--DAVHLARNFDKIVDLTGIILTRMDG 252 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q--~a~~~a~~F~~~~~i~giIlTKlD~ 252 (461)
.+-+-+|||+|- .+...++.. .+...|-.+||+||.-| | +....|+.+. +++ =++++|+|-
T Consensus 67 ~~~i~~IDtPGH----~df~~~~~~--g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~--~~~-iv~iNK~D~ 132 (192)
T cd01889 67 NLQITLVDCPGH----ASLIRTIIG--GAQIIDLMLLVVDATKGIQTQTAECLVIGEILC--KKL-IVVLNKIDL 132 (192)
T ss_pred CEEEEEEECCCC----HHHHHHHHH--HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEECCCC
T ss_conf 458999877983----889988888--874326527999878888789999999999858--997-999974127
No 437
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.28 Score=29.95 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=26.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 588418996234433346889999999986
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKT 126 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~ 126 (461)
.+-|+-++|.|+.|+||+|++-.+|..+-.
T Consensus 16 ~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc 45 (290)
T PRK05917 16 QKVPSAILLHGQDLSNLSQYAYELASLILL 45 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 996606876899986599999999999857
No 438
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.47 E-value=0.026 Score=37.79 Aligned_cols=135 Identities=20% Similarity=0.333 Sum_probs=64.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
+-..|+++|+.||||||-+-+|. +.. + +.+-| .+|..+..
T Consensus 13 ~~~KililG~~~sGKTsll~~l~------~~~-~-----~~~~p-----------T~G~~~~~----------------- 52 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLL------GED-I-----DTISP-----------TLGFQIKT----------------- 52 (173)
T ss_pred CCEEEEEECCCCCCHHHHHHHHC------CCC-C-----CCCCC-----------CCCEEEEE-----------------
T ss_conf 73189999899978899999983------999-8-----97267-----------05777899-----------------
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHHHHC------CCC-CEEEEE
Q ss_conf 974158869983344222112468999-99985138511000310111225688889-887635------844-077641
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEI-SEIKSLTNPHEILLVADALTGQDAVHLAR-NFDKIV------DLT-GIILTR 249 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~~~~------~i~-giIlTK 249 (461)
...+++.+.+-||||+-.. ..+ ..+.+ +.+-+++|+|++-. +.+..++ .+++.+ ++- =++.+|
T Consensus 53 ~~~~~~~l~iwD~~G~e~~-----~~~~~~y~~--~a~~ii~VvD~td~-~~~~~~~~~l~~ll~~~~~~~~pili~~NK 124 (173)
T cd04154 53 LEYEGYKLNIWDVGGQKTL-----RPYWRNYFE--STDALIWVVDSSDR-LRLDDCKRELKELLQEERLAGATLLILANK 124 (173)
T ss_pred EEECCEEEEEEECCCCCCC-----CHHHHHHHC--CCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 9989999999966886020-----058999722--66538999855657-889999999999986354159847999876
Q ss_pred CCCCCC-C----CHHHHHHHHHCCCHHH--EE--CCCCCCC
Q ss_conf 157663-3----0367778884787302--61--5867232
Q gi|254780711|r 250 MDGDGR-G----GAALSMRTVTGKPIKA--IG--TGEKIND 281 (461)
Q Consensus 250 lD~~ak-g----G~als~~~~~~~PI~f--ig--~GE~~~d 281 (461)
.|-... - -..+........|+.| ++ |||.+++
T Consensus 125 ~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~gI~e 165 (173)
T cd04154 125 QDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
T ss_conf 56777889999999986874457982999988966929899
No 439
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.29 Score=29.90 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=58.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC----------CC---CCHHHHHHHHHHHCCC-------CC
Q ss_conf 8418996234433346889999999986148950782054----------22---1004779999851034-------74
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD----------VH---RPAAQEQLRYLGEQIQ-------VD 158 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D----------t~---R~aA~eQL~~~a~~~~-------v~ 158 (461)
+-.+++||||.|+|||.-.--+|.-+-+ +-.++.|...- || =||-+=|--.-|...| |+
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~R-kfvR~sLGGvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~LLDEID 427 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGR-KFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEID 427 (782)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHH
T ss_conf 8857999789988701189999999589-779995476542777535531233568728999999867768747864033
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH---------HCCCC---EEEEECCCCCC-CHHHHHHHHH
Q ss_conf 2223321036899999999997---------41588---69983344222-1124689999
Q gi|254780711|r 159 TLEVIPEQSPEKIAIRATQSAR---------DGGYD---AVILDTAGRNH-INDSLMQEIS 206 (461)
Q Consensus 159 ~~~~~~~~dp~~i~~~a~~~a~---------~~~~D---~iiiDTaGR~~-~d~~lm~El~ 206 (461)
-.++..-.||++..-+-++.-. +-.|| |.+|-||-.+. +-..|++.|+
T Consensus 428 Km~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRME 488 (782)
T COG0466 428 KMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRME 488 (782)
T ss_pred HCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEECCCCCCCCHHHHCCEE
T ss_conf 3167777886888886269765676122201676644325888603751329867843030
No 440
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.46 E-value=0.02 Score=38.75 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=38.1
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-HHHHHHHHHCCCCCC
Q ss_conf 2588418996234433346889999999986148950782054221004-779999851034742
Q gi|254780711|r 96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA-QEQLRYLGEQIQVDT 159 (461)
Q Consensus 96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA-~eQL~~~a~~~~v~~ 159 (461)
.+..|++|++.|+-||||||-...||..+ +. -++-+|.|-|.+ ++.+. .|+|.
T Consensus 4 ~~~~~~iiVVMGVsGsGKSTig~~LA~~l----~~--~fiegDdfHp~~Ni~KM~-----~GiPL 57 (177)
T PRK11545 4 TNHDHHIYVLMGVSGSGKSAVASAVAHQL----HA--AFLDGDFLHPRCNIEKMA-----SGEPL 57 (177)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH----CC--CEECCCCCCCHHHHHHHH-----CCCCC
T ss_conf 67887599998479899999999999981----99--855365558999999862-----89999
No 441
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.44 E-value=0.052 Score=35.54 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=30.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 841899623443334688999999998614895078205422
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
.-.++.++|+|||||||.+-=++..++...|. +.+-..|..
T Consensus 26 ~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~~G~-I~~~g~~i~ 66 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLT 66 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-EEECCEECC
T ss_conf 99799998899998999999996467798887-789999999
No 442
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=95.42 E-value=0.01 Score=40.92 Aligned_cols=240 Identities=25% Similarity=0.341 Sum_probs=129.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
+-|+||||+|||||--+-=||+.+ +-+.+++=|-| + .-+.|-|.|.-.|..+=++.|
T Consensus 153 SNILLiGPTGSGKTLLAqTLA~~L----~VPfAiADATt-----------L-------TEAGYVGEDVENIL~~Llq~a- 209 (452)
T TIGR00382 153 SNILLIGPTGSGKTLLAQTLARIL----NVPFAIADATT-----------L-------TEAGYVGEDVENILLKLLQAA- 209 (452)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC----CCCEEECCHHH-----------H-------HCCCCCCCCHHHHHHHHHHHC-
T ss_conf 662454688852689999999873----88742111110-----------2-------006642422889999998741-
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCC-HHCC-HHHH-HHHHHHHHHCCC-CC-----EEEEEC
Q ss_conf 415886998334422211246899999985138-511000310-1112-2568-888988763584-40-----776411
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTN-PHEILLVAD-ALTG-QDAV-HLARNFDKIVDL-TG-----IILTRM 250 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~-p~e~~lV~d-a~~G-q~a~-~~a~~F~~~~~i-~g-----iIlTKl 250 (461)
.||| .-|+|--+- ++|+-+|.+... |. ..=| |-=| |+|+ ...+-==-.||= +| ==+-++
T Consensus 210 --d~DV---~kA~kGIiY---IDEIDKIaRkSEN~S---ITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~~~iqi 278 (452)
T TIGR00382 210 --DYDV---EKAQKGIIY---IDEIDKIARKSENPS---ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQEFIQI 278 (452)
T ss_pred --CCCH---HHHCCCEEE---EECCCCHHHHCCCCE---EEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEE
T ss_conf --4552---452785089---842231012157780---11221755499999987603234317544886886576886
Q ss_pred CCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 57663303677788847873026158672321001368899877-35862788999874211267899888653104637
Q gi|254780711|r 251 DGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRI-LGMGDVVSLVEKAARNLNEKQAALTAKKIAKGKFD 329 (461)
Q Consensus 251 D~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~ri-LGmgD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~ 329 (461)
|. .-|.|||-| ..+-||.-=-.|+...- +|++-... ....++....+- -+-.
T Consensus 279 DT---------------s~ILFICGG-AF~GL~~iI~~R~~~~~~iGF~~~~~------~~~~~~~~~~~L-----~~v~ 331 (452)
T TIGR00382 279 DT---------------SNILFICGG-AFVGLEKIIKKRTEKKSSIGFGAEVK------KKSKEKSEEELL-----RQVE 331 (452)
T ss_pred CC---------------CCEEEEECC-HHHHHHHHHHHHHCCCCCCCCCCCHH------HHHHHHHHHHHH-----HHHC
T ss_conf 47---------------640011054-34448999988745553335455210------045787899999-----7517
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 99999999998511488999998731344234323111678888899999745898786084113357899972326679
Q gi|254780711|r 330 LEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTN 409 (461)
Q Consensus 330 l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~RIA~GSG~~ 409 (461)
.+|+ -|-|-+=-+.+=||=++.+ ...++.-|-.+. ..|+
T Consensus 332 ~~DL-------~kFGLIPEfIGRLPV~a~L------~~L~~eAL~~IL-----------~~Pk----------------- 370 (452)
T TIGR00382 332 PEDL-------VKFGLIPEFIGRLPVIATL------EKLDEEALIAIL-----------TKPK----------------- 370 (452)
T ss_pred HHHH-------HHHCCCCCCCCCCCCEECC------CCCCHHHHHHHH-----------HCCC-----------------
T ss_conf 1112-------2105551011053402027------878878999985-----------2544-----------------
Q ss_pred HHHHHHHHHHHHHHHHH---------------H-HHHCCCCCCCHHHHHHHHH
Q ss_conf 89999999999999999---------------9-9860688620179998742
Q gi|254780711|r 410 AAKINKLLKLHRQVAEM---------------M-HSTQGLGGNALTQQIMGRL 446 (461)
Q Consensus 410 v~eVn~Llk~f~~m~km---------------m-k~~~~~~~~~~~~~~~g~~ 446 (461)
|.|+|||++|=+| . +.+.++.|.+.++.+.-.+
T Consensus 371 ----NAlvKQY~~lf~ld~VeL~F~~eAl~~IA~~A~~RkTGARGLRsI~E~~ 419 (452)
T TIGR00382 371 ----NALVKQYQALFKLDNVELEFEEEALKAIAKKALERKTGARGLRSIVEGL 419 (452)
T ss_pred ----HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf ----4488999997164561134558889999999985076751578999999
No 443
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.19 Score=31.30 Aligned_cols=97 Identities=20% Similarity=0.140 Sum_probs=52.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHH-HHHHHCC-CCCCCCCCCCCHHHHHHHH
Q ss_conf 8841899623443334688999999998614895-07820542210047799-9985103-4742223321036899999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQL-RYLGEQI-QVDTLEVIPEQSPEKIAIR 174 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL-~~~a~~~-~v~~~~~~~~~dp~~i~~~ 174 (461)
..|.-+++.|+.|+|||+|+-.++..++..-... +.-|.|-.++ -..|. ..++..+ ++|..+... .+-....++
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~--t~~~i~~~i~~~~~~~p~~g~~~-~~~~~~l~~ 116 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELR--TPYQVLSKILNKLGKVPLTGDSS-LEILKRLYD 116 (366)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECC--CHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHH
T ss_conf 998607998899987328999999999733156757999513078--78799999999826899767632-689999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 9999974158869983344222112
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHIND 199 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~ 199 (461)
.+.. ....=+|+.|-.-.+....
T Consensus 117 ~~~~--~~~~~IvvLDEid~L~~~~ 139 (366)
T COG1474 117 NLSK--KGKTVIVILDEVDALVDKD 139 (366)
T ss_pred HHHH--CCCEEEEEECCHHHHHCCC
T ss_conf 7774--1875999976476541546
No 444
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.41 E-value=0.0063 Score=42.52 Aligned_cols=93 Identities=28% Similarity=0.390 Sum_probs=51.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHH------------HHHHHCCCCCCCCCCCCCH
Q ss_conf 18996234433346889999999986148-9507820542210047799------------9985103474222332103
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKILMASLDVHRPAAQEQL------------RYLGEQIQVDTLEVIPEQS 167 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~lv~~Dt~R~aA~eQL------------~~~a~~~~v~~~~~~~~~d 167 (461)
...|++=-+|+|||-|+.-|.+.|.+.++ ++|++.+ | |.+=.+|- +++++..++--.......+
T Consensus 437 rraLl~MATGTGKTrtaial~~rLlk~~~~kRILFLv-D--R~~L~~QA~~~F~~~~~~~~~~~~~~~~v~~l~~~~~~~ 513 (1126)
T PRK11448 437 REILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLV-D--RRALGEQALDAFKDTKIEGNQTFASIYDIKGLTDKFPED 513 (1126)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC-C--HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 5468872488858989999999999658767257985-6--589999999987543454566640022001025678787
Q ss_pred HHHHHH---HH----HHH------HHHCCCCEEEEECCCCCC
Q ss_conf 689999---99----999------974158869983344222
Q gi|254780711|r 168 PEKIAI---RA----TQS------ARDGGYDAVILDTAGRNH 196 (461)
Q Consensus 168 p~~i~~---~a----~~~------a~~~~~D~iiiDTaGR~~ 196 (461)
-..|.. .+ +.+ +--..||+||||-|-|..
T Consensus 514 ~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy 555 (1126)
T PRK11448 514 ETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGY 555 (1126)
T ss_pred CCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 771999730789987523576779999851379897787887
No 445
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=95.40 E-value=0.0045 Score=43.69 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=49.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC-----------CCCCCCC-----
Q ss_conf 418996234433346889999999986148950782054221004779999851034-----------7422233-----
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ-----------VDTLEVI----- 163 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~-----------v~~~~~~----- 163 (461)
...+| .|++|||||=|+|.+=+.+ +++.+|+| +=||+|.|+= |++|-++
T Consensus 30 ~~QtL-LGvTGsGKTFT~AnVIa~~----~rPTLV~a----------HNKTLAAQLY~EfKefFPeNAVEYFvSYYDYYQ 94 (667)
T TIGR00631 30 KEQTL-LGVTGSGKTFTMANVIAQV----QRPTLVLA----------HNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQ 94 (667)
T ss_pred CCEEE-EEEECCCHHHHHHHHHHHH----CCCEEEEC----------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 71478-5321486278898999984----79849985----------777679999999986386772452552032378
Q ss_pred -----------CCCH-----HHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf -----------2103-----6899999999997415886998334422
Q gi|254780711|r 164 -----------PEQS-----PEKIAIRATQSARDGGYDAVILDTAGRN 195 (461)
Q Consensus 164 -----------~~~d-----p~~i~~~a~~~a~~~~~D~iiiDTaGR~ 195 (461)
-++| -.+-.+.+--.+-.+.-|||+|=|--|-
T Consensus 95 PEAYvP~~DtyIEKdaSINdeIerlR~SAT~SLl~RrDVIVVASVScI 142 (667)
T TIGR00631 95 PEAYVPSKDTYIEKDASINDEIERLRLSATKSLLERRDVIVVASVSCI 142 (667)
T ss_pred CCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 732147988413045530046767788988864237878999875520
No 446
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.39 E-value=0.07 Score=34.59 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=32.5
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 1000258841899623443334688999999998614895078205422
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
.+...++ .++.++|+|||||||++-=|+-.+.-..| +|.+-..|..
T Consensus 20 sl~v~~G--Ei~~liG~nGaGKSTll~~l~G~~~p~~G-~I~~~G~~~~ 65 (182)
T cd03215 20 SFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPPASG-EITLDGKPVT 65 (182)
T ss_pred EEEECCC--CEEEEECCCCCCCCHHHHHHCCCCCCCCC-EEEECCEECC
T ss_conf 7898599--69999888999926377876698678877-5999999988
No 447
>PRK10037 cell division protein; Provisional
Probab=95.38 E-value=0.03 Score=37.43 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=32.9
Q ss_pred EEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 189962344-3334688999999998614895078205422
Q gi|254780711|r 101 LVIMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 101 ~vIllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
.+|.++|+. |+||||.+|-||.-+.+ .|++|++|-+|..
T Consensus 2 ~iial~s~kGGVGkTTltAnLA~aL~~-~g~~VlaID~dpq 41 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQM-LGENVLVIDACPD 41 (250)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCHH
T ss_conf 379996078887689999999999997-7991899957825
No 448
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.37 E-value=0.039 Score=36.47 Aligned_cols=217 Identities=18% Similarity=0.163 Sum_probs=102.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-------------CCHH---HHHHHHHHHCCCCCCCCC
Q ss_conf 841899623443334688999999998614895078205422-------------1004---779999851034742223
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH-------------RPAA---QEQLRYLGEQIQVDTLEV 162 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~-------------R~aA---~eQL~~~a~~~~v~~~~~ 162 (461)
+--++.++|+|||||||.+-=|+..++-..| +|.+...|.. .... +.+++.+.+++|+-| ..
T Consensus 32 ~GE~v~IiG~nGsGKSTL~k~l~Gll~P~~G-~V~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~vG~vf-Q~ 109 (304)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALLLPDTG-TIEWIYFDEKNKEKKKVVEDPVIKLKFRKKLKKIKEIRRRVGVVF-QF 109 (304)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEE-EC
T ss_conf 9989999879998599999999669998871-699942454345543113430221345666666898773379995-17
Q ss_pred CC-------------------CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 32-------------------1036899999999997415886998334422211-246899999985138511000310
Q gi|254780711|r 163 IP-------------------EQSPEKIAIRATQSARDGGYDAVILDTAGRNHIN-DSLMQEISEIKSLTNPHEILLVAD 222 (461)
Q Consensus 163 ~~-------------------~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d-~~lm~El~~i~~~~~p~e~~lV~d 222 (461)
.. +-+..++..++.+..+.-+.+-=+.| |.+.+ ..=..+.-.|..+.-.+--+|++|
T Consensus 110 p~~ql~~~tV~e~i~fg~~~~g~~~~e~~~rv~~~l~~vgL~~~~~~---~~p~~LSGGqkqRVaIA~~La~~P~iLlLD 186 (304)
T PRK13651 110 AEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLPEEFLQ---KSPFELSGGQKRRVALAGILAMEPDFLVFD 186 (304)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH---CCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 85455650599999999998499999999999999998699856751---895428999999999999884599999972
Q ss_pred H-HCCHHHHHHH------HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCCCHHHHHH
Q ss_conf 1-1122568888------9887635844077641157663303677788847873026158672321---0013688998
Q gi|254780711|r 223 A-LTGQDAVHLA------RNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENFFPDRIAN 292 (461)
Q Consensus 223 a-~~Gq~a~~~a------~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F~p~~~~~ 292 (461)
= +.|.|...+. +..++. +.|=+++|- | +..+...---|.++-.|+-+.|= |+|.-.....
T Consensus 187 EPTagLDp~~~~~i~~~l~~L~~~-G~TVI~vTH-d--------m~~v~~~adRvivl~~G~Iv~~G~p~evf~~~~~l~ 256 (304)
T PRK13651 187 EPTAGLDPQGVKEILEIFDTLNKK-GKTIILVTH-D--------LDNVLEWTKRTIFFKDGKIIKDGDTYEILNDEKFLI 256 (304)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEECC-C--------HHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHH
T ss_conf 986658989999999999999977-999999867-8--------999999799999998998999868899867988998
Q ss_pred HH-HCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 77-3586278899987421-1267899888653104637999999999985
Q gi|254780711|r 293 RI-LGMGDVVSLVEKAARN-LNEKQAALTAKKIAKGKFDLEDLAEQFRQTQ 341 (461)
Q Consensus 293 ri-LGmgD~~~l~e~~~~~-~d~~~~~~l~~k~~~g~F~l~Df~~Ql~~i~ 341 (461)
++ |...-+..|.++..+. ++ + ..-+|.+++.+++.+..
T Consensus 257 ~~~l~~P~~~~l~~~L~~~g~~----------~-~~~~t~~e~~~~~~~~~ 296 (304)
T PRK13651 257 ENKMLPPKLLNFVNKLIKKGIP----------I-SKVTSIDELASEINMYL 296 (304)
T ss_pred HCCCCCCHHHHHHHHHHHCCCC----------C-CCCCCHHHHHHHHHHHH
T ss_conf 7799998199999999976999----------9-98688999999999999
No 449
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.36 E-value=0.17 Score=31.73 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=32.9
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 0002588418996234433346889999999986148950782054221
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
+...++ ..+.++|++||||||-+-=|+.++.-..|. |.+-..|...
T Consensus 23 l~i~~G--~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~-i~i~g~~~~~ 68 (173)
T cd03246 23 FSIEPG--ESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGADISQ 68 (173)
T ss_pred EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCC
T ss_conf 998599--999999999980999999996666679998-9999999332
No 450
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.043 Score=36.20 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=34.3
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 0002588418996234433346889999999986148950782054221
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
+.+.-.+-.++.++|+|||||||++-=++-.++-..| +|.+-..|..+
T Consensus 19 is~~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~G-~i~i~G~~~~~ 66 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG-RATVAGHDVVR 66 (220)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf 2679889839999999987199999999769788962-89999999883
No 451
>PRK07933 thymidylate kinase; Validated
Probab=95.32 E-value=0.26 Score=30.18 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=28.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 89962344333468899999999861489507820
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS 136 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~ 136 (461)
.|.|=|+-||||||-+..|+.+|.. .|.+|.+..
T Consensus 2 ~I~fEGiDGsGKSTq~~~L~~~L~~-~g~~v~~~r 35 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEA-AGRSVATLA 35 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEE
T ss_conf 8999889999899999999999997-799079984
No 452
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30 E-value=0.11 Score=33.13 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=54.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHH----CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 189962344333468899999999861----4895078205422100477999985103474222332103689999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTL----KKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~----~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
.-.+++|+.|+||||..--+|+.+..- -++||.+|-.-.-=+|+..-.-++..-..+++.... |-. .++
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~c----pk~---~gm 210 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPC----PKA---EGM 210 (308)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCC----HHH---HHH
T ss_conf 2469965998870779999999863151126773289971500430343588603232210104656----178---889
Q ss_pred HHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999-7415886998334422211246899999985138
Q gi|254780711|r 177 QSA-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN 213 (461)
Q Consensus 177 ~~a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~ 213 (461)
-.| .+-.-+|++||--|| +++...+..+++
T Consensus 211 mmaIrsm~PEViIvDEIGt-------~~d~~A~~ta~~ 241 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGT-------EEDALAILTALH 241 (308)
T ss_pred HHHHHHCCCCEEEEECCCC-------HHHHHHHHHHHH
T ss_conf 9999954995799834364-------777999999985
No 453
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.30 E-value=0.21 Score=30.85 Aligned_cols=187 Identities=23% Similarity=0.287 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHCCCCEEEECCCC---CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99999999861489507820542---210047799998510347422233210368999999999974158869983344
Q gi|254780711|r 117 TAKIAYHLKTLKKKKILMASLDV---HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAG 193 (461)
Q Consensus 117 ~aKLA~~~~~~~~~kV~lv~~Dt---~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaG 193 (461)
-..+|.+|...+-...-++-.|- -|+--.+-++..++...+|+.....=.+. +.++.+-+.++|-|+|-|+-
T Consensus 33 P~~~a~~~~~~Ga~~lhivDLd~a~~g~~~n~~~I~~i~~~~~~pi~vGGGIrs~-----~~i~~~l~~Ga~kvvigs~~ 107 (240)
T PRK13585 33 PVEVAKRWVDAGAKTLHLVDLDGAFEGSRKNADIIEKIVEATDVSIQLGGGIRSV-----EDAASLLDLGVDRVILGTAA 107 (240)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCH-----HHHHHHHHCCCCEEEECCCC
T ss_conf 9999999998799979999897721189444999999997379778997885879-----99999997699899939811
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC------------CHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-C---
Q ss_conf 22211246899999985138511000310111------------2256888898876358440776411576633-0---
Q gi|254780711|r 194 RNHINDSLMQEISEIKSLTNPHEILLVADALT------------GQDAVHLARNFDKIVDLTGIILTRMDGDGRG-G--- 257 (461)
Q Consensus 194 R~~~d~~lm~El~~i~~~~~p~e~~lV~da~~------------Gq~a~~~a~~F~~~~~i~giIlTKlD~~akg-G--- 257 (461)
..|.++++|+ .+...|.-+.+-+|..- +.+..+.++.+.+ .++..+|+|-+|-+-.. |
T Consensus 108 --~~~~~~~~~i---~~~~G~~~ivvsiD~k~~~v~~~gw~~~~~~~~~e~~~~~~~-~g~~eii~tdI~~dGt~~G~d~ 181 (240)
T PRK13585 108 --IENPELVREL---SDEFGSERVMVSLDAKDGEVVIEGWTESTGKDPVEWAQRFEE-LGAGSILFTNVDVEGLLQGVNP 181 (240)
T ss_pred --HHCCHHHHHH---HHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEEEEECCHHHHCCCCH
T ss_conf --3184288999---987397217999993065023247656788635577788886-3873589864233223257898
Q ss_pred -HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf -3677788847873026158672321001368899877358627889998742112678998886531046379999999
Q gi|254780711|r 258 -AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQ 336 (461)
Q Consensus 258 -~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~~k~~~g~F~l~Df~~Q 336 (461)
..-.+...+.+||.+-|==-+++||+...- +|.-. --..+-+-.|+|++.+.++-
T Consensus 182 ~~~~~i~~~~~~pviasGGv~s~~di~~l~~-------~g~~g-----------------vivG~Al~~g~i~l~e~~~~ 237 (240)
T PRK13585 182 EPVRELVDSVDIPVIASGGVTSLDDVKALKE-------AGAAG-----------------VVVGSALYKGKFTLEEALEA 237 (240)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHH-------CCCCE-----------------EEEEHHHHCCCCCHHHHHHH
T ss_conf 9999999868999999889999999999997-------89978-----------------99876876799789999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780711|r 337 FR 338 (461)
Q Consensus 337 l~ 338 (461)
++
T Consensus 238 ~~ 239 (240)
T PRK13585 238 AE 239 (240)
T ss_pred HH
T ss_conf 64
No 454
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.059 Score=35.14 Aligned_cols=46 Identities=28% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 02588418996234433346889999999986148950782054221
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
+.-.+-.++.++|+|||||||.+-=|+-.++-..| .|.+-..|..+
T Consensus 21 l~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~~G-~i~i~g~~~~~ 66 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG-EIKVLGKDIKK 66 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCC
T ss_conf 78879939999878997999999999768577878-89999999886
No 455
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.099 Score=33.41 Aligned_cols=189 Identities=19% Similarity=0.170 Sum_probs=88.3
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH-------H-------HHHHHHCCCC
Q ss_conf 1000258841899623443334688999999998614895078205422100477-------9-------9998510347
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE-------Q-------LRYLGEQIQV 157 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e-------Q-------L~~~a~~~~v 157 (461)
.+....+ .++.++|++||||||..-=+|-.++-..| .|.+-..|.......+ | +.. .+.+..
T Consensus 19 s~~v~~G--e~~~iiGpSGsGKSTLlr~i~Gl~~p~~G-~I~~~G~di~~~~~~~r~ig~vfQ~~~Lfp~~tV-~eNi~~ 94 (235)
T cd03299 19 SLEVERG--DYFVILGPTGSGKSVLLETIAGFIKPDSG-KILLNGKDITNLPPEKRDISYVPQNYALFPHMTV-YKNIAY 94 (235)
T ss_pred EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHCCEEEECCCCCCCCCCCH-HHHHHH
T ss_conf 8798899--89999999963599999999749999965-9999999999999767897894579866899909-999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHCC--C-----CCCCCCCCHHCCHHH
Q ss_conf 42223321036899999999997415886998334422211-246899999985138--5-----110003101112256
Q gi|254780711|r 158 DTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIN-DSLMQEISEIKSLTN--P-----HEILLVADALTGQDA 229 (461)
Q Consensus 158 ~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d-~~lm~El~~i~~~~~--p-----~e~~lV~da~~Gq~a 229 (461)
+. ...+.++.++..++.+.+..-+. =+-+.|.+.+ ..=+++--.|.++.- | ||..=-+|..+..+.
T Consensus 95 ~l--~~~~~~~~e~~~rv~e~l~~~gl----~~~~~~~p~~LSGGq~QRVaiARAl~~~P~llllDEP~s~LD~~~~~~i 168 (235)
T cd03299 95 GL--KKRKVDKKEIERKVLEIAEMLGI----DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL 168 (235)
T ss_pred HH--HHCCCCHHHHHHHHHHHHHHCCC----HHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 99--87699999999999999987799----7787489445899999999999999738998999288764699999999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCC---CCCC--HHHHHHHHHCCCC
Q ss_conf 88889887635844077641157663303677788847873026158672321---0013--6889987735862
Q gi|254780711|r 230 VHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDL---ENFF--PDRIANRILGMGD 299 (461)
Q Consensus 230 ~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dl---e~F~--p~~~~~riLGmgD 299 (461)
.+..+..++..++|-+++|-= --.|+.+ .--|.++-.|+-+..= |.|+ .+.++.++||.-+
T Consensus 169 ~~~l~~l~~~~~~T~i~vTHd-----~~~a~~~----aDri~vl~~G~iv~~G~p~ev~~~P~~~~~a~flG~~n 234 (235)
T cd03299 169 REELKKIRKEFGVTVLHVTHD-----FEEAWAL----ADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLGFNN 234 (235)
T ss_pred HHHHHHHHHHHCCEEEEECCC-----HHHHHHH----CCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHCCCCC
T ss_conf 999999999829999998789-----9999996----99999998999999868899985899879998458132
No 456
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=95.29 E-value=0.069 Score=34.61 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=57.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHH-CCC-CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 189962344333468899999999861-489-507820542210047799998510347422233210368999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTL-KKK-KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~-~~~-kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
.|+++-|..|+|||--.-.|.+.+... .+. .+.+..-..++---.++| +...+...-. .-.-|.... +.+.
T Consensus 2 ~v~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l---~~~~~~~~~~--~~~~~~~fi-~~~~- 74 (348)
T pfam09848 2 AVFLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEAL---AGDLKVRKKK--LFRKPTSFI-NNLH- 74 (348)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHH---HHHCCHHHCC--CCCCCHHHH-CCCC-
T ss_conf 79999777993899999999999864402682089957866999999998---6041200102--000725231-6523-
Q ss_pred HHHCCCCEEEEECCCCCCCHHHH------HHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 97415886998334422211246------8999999851385110003101
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSL------MQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~l------m~El~~i~~~~~p~e~~lV~da 223 (461)
.....+||||+|-|=|+...... -.+|..|.+..+ -+++++|.
T Consensus 75 ~~~~~~dvvivDEAhRl~~k~~~~~~~~~~~ql~~i~~~a~--v~V~~~D~ 123 (348)
T pfam09848 75 KAPPHEDVVIVDEAHRLWTKSDLYFNFSGPNQLDEIMKRAK--VVVFFIDE 123 (348)
T ss_pred CCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--EEEEEECC
T ss_conf 57986778998317866543365567785799999997528--59999879
No 457
>PTZ00110 helicase; Provisional
Probab=95.28 E-value=0.25 Score=30.33 Aligned_cols=129 Identities=20% Similarity=0.214 Sum_probs=68.7
Q ss_pred EEEECCCCCCHHHH-----HHHHHHH-HHHHCCCCEEEECCCCCCCHHH--HHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99623443334688-----9999999-9861489507820542210047--79999851034742223321036899999
Q gi|254780711|r 103 IMLVGLQGSGKTTT-----TAKIAYH-LKTLKKKKILMASLDVHRPAAQ--EQLRYLGEQIQVDTLEVIPEQSPEKIAIR 174 (461)
Q Consensus 103 IllvGl~GsGKTTT-----~aKLA~~-~~~~~~~kV~lv~~Dt~R~aA~--eQL~~~a~~~~v~~~~~~~~~dp~~i~~~ 174 (461)
++-+-.+|||||-. +.++... ..+.+....+||-+-|.--|-. ++++.++...++.+.....|.+ ..--..
T Consensus 222 vIgiAqTGSGKTLAFlLP~l~hi~~q~~~~~~~gP~aLILaPTRELA~QI~~e~~~~~~~~~ir~~~i~GG~~-~~~Q~~ 300 (602)
T PTZ00110 222 MIGIAETGSGKTLAFLLPAIVHINAQPLLRPGDGPIVLVLAPTRELAEQIREQALQFGRSSKLKNSVAYGGVP-KRFQTY 300 (602)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHH
T ss_conf 7998789788999999999999851634367899769997383999999999999971547854999979968-799999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCC------------------------HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHH
Q ss_conf 99999741588699833442221------------------------124689999998513851100031011122568
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHI------------------------NDSLMQEISEIKSLTNPHEILLVADALTGQDAV 230 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~------------------------d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~ 230 (461)
...++.| |+|-|+||+-. |.....++.+|...+.|+--.+...||.-.+..
T Consensus 301 ----~L~~G~d-IvVATPGRLiDlL~~~~~~L~~v~yLVLDEADRMLDmGFe~qI~~Il~~i~pdRQTlLFSAT~p~~V~ 375 (602)
T PTZ00110 301 ----ALRRGVE-ILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQ 375 (602)
T ss_pred ----HHCCCCC-EEEECCHHHHHHHHCCCCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHH
T ss_conf ----8716999-99979238999996499874310289987577663546299999999858978779999558998999
Q ss_pred HHHHHHH
Q ss_conf 8889887
Q gi|254780711|r 231 HLARNFD 237 (461)
Q Consensus 231 ~~a~~F~ 237 (461)
..|+.|-
T Consensus 376 ~LA~~~L 382 (602)
T PTZ00110 376 SLARDLC 382 (602)
T ss_pred HHHHHHH
T ss_conf 9999982
No 458
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=95.28 E-value=0.076 Score=34.29 Aligned_cols=27 Identities=41% Similarity=0.363 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 841899623443334688999999998
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLK 125 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~ 125 (461)
+-.++.++|.+||||||++--+...+.
T Consensus 28 ~Ge~~aiiG~SGsGKStl~k~llgll~ 54 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999998789999999957998
No 459
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=95.27 E-value=0.027 Score=37.78 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=88.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
.+.| |=|.||.|+||||-+--+| ++.+|+|+++..|. ||.+ -+.++.+.|..-.++ +
T Consensus 20 ~G~P--vHl~GPaG~GKT~LA~hvA----~~r~RPV~l~~Gd~-------eL~~------~DLvG~~~g~~~~kv----~ 76 (265)
T TIGR02640 20 SGYP--VHLRGPAGTGKTTLAMHVA----RKRDRPVVLINGDA-------ELTT------SDLVGSYAGYTRKKV----V 76 (265)
T ss_pred CCCC--EEEECCCCCCHHHHHHHHH----HHCCCCEEEEECCC-------CCCC------CCCCCCCCCCEEEEE----E
T ss_conf 7886--6744788855689999999----73689689986582-------3265------442315467522223----2
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-------CCC----------CCCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf 99974158869983344222112468999999851-------385----------1100031011122568888988763
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHINDSLMQEISEIKSL-------TNP----------HEILLVADALTGQDAVHLARNFDKI 239 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~-------~~p----------~e~~lV~da~~Gq~a~~~a~~F~~~ 239 (461)
+.+.++= +=.=|++--+-.|..|..-.++=... .+| .|-+|-+++.-+++. |=+-
T Consensus 77 DqfihnV--~K~~d~~~~~W~D~rLt~Av~eG~TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~------Yv~V 148 (265)
T TIGR02640 77 DQFIHNV--VKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESR------YVDV 148 (265)
T ss_pred ECCEEEE--ECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC------CEEE
T ss_conf 0121113--4251220026678357899756972766475788620456567555523215888787787------2257
Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC----CCHHHHHHHHHHHH--HH
Q ss_conf 5844077641157663303677788847873026158672321001368899877358----62788999874211--26
Q gi|254780711|r 240 VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM----GDVVSLVEKAARNL--NE 313 (461)
Q Consensus 240 ~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm----gD~~~l~e~~~~~~--d~ 313 (461)
-|-=.+||| -=|.=|-|+=+.-|. .++||.|| -|..+=++=+.+.. ++
T Consensus 149 hP~FR~IfT------------------SNp~EYAGVh~~QDA--------LlDRL~ti~~D~~D~~~e~ai~~~~t~~~~ 202 (265)
T TIGR02640 149 HPEFRVIFT------------------SNPVEYAGVHETQDA--------LLDRLVTISMDYPDEDTETAILRAKTDVAE 202 (265)
T ss_pred CCCCCEEEC------------------CCCCCCCCCCCHHHH--------HHHHHCCCCCCCCCHHHHHHHHHHHHCCCH
T ss_conf 887024631------------------487010576771667--------766440045785444789999998606124
Q ss_pred HHHHHH
Q ss_conf 789988
Q gi|254780711|r 314 KQAALT 319 (461)
Q Consensus 314 ~~~~~l 319 (461)
+++..+
T Consensus 203 ~~a~~I 208 (265)
T TIGR02640 203 ESAATI 208 (265)
T ss_pred HHHHHH
T ss_conf 678999
No 460
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.27 E-value=0.048 Score=35.80 Aligned_cols=174 Identities=18% Similarity=0.205 Sum_probs=74.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH----HHHHHH
Q ss_conf 4189962344333468899999999861489507820542210047799998510347422233210368----999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPE----KIAIRA 175 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~----~i~~~a 175 (461)
+.++.++|+.|+||||-+-.....+.. .+ .+-..|. .-..|++.|..-.....-+-|. .+-..|
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~---~~-ivNyG~~--------Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~A 71 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVK---HK-IVNYGDL--------MLEIAKKKGLVEHRDEMRKLPLENQRELQAEA 71 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH---CE-EEEHHHH--------HHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHH
T ss_conf 559999757988726699999987752---20-0007699--------99999983872028988529888999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEE-CCCC
Q ss_conf 9999741588699833442221124689999-9985138511000310111225688889887635844077641-1576
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHINDSLMQEIS-EIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTR-MDGD 253 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~-~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTK-lD~~ 253 (461)
.........+ ||+||-+--.+-.....-|- .+.+.++|+-+++ +.|.----+..+.+.-...-++.+.=--+ .-.-
T Consensus 72 a~rI~~~~~~-iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivl-lEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~ 149 (189)
T COG2019 72 AKRIAEMALE-IIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVL-LEADPEEILERRLRDSRRDRDVESVEEIREHQEM 149 (189)
T ss_pred HHHHHHHHCC-EEEECCCEECCCCCCCCCCCHHHHHHCCCCEEEE-EECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999974206-5873241114787667788399997529887999-9379899999872261204662108999999999
Q ss_pred CCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 633036777888478730261586723210013688998773
Q gi|254780711|r 254 GRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL 295 (461)
Q Consensus 254 akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL 295 (461)
+| -+|......+|.+++-+-+- .++|+.-++-|+
T Consensus 150 nR-~aA~a~A~~~gatVkIV~n~-------~~~~e~Aa~eiv 183 (189)
T COG2019 150 NR-AAAMAYAILLGATVKIVENH-------EGDPEEAAEEIV 183 (189)
T ss_pred HH-HHHHHHHHHHCCEEEEEECC-------CCCHHHHHHHHH
T ss_conf 99-99999999708848997478-------888788899999
No 461
>KOG1051 consensus
Probab=95.25 E-value=0.33 Score=29.42 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=68.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHH
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742-22332103689999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-LEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-~~~~~~~dp~~i~~~a~ 176 (461)
+++.-+||+||.|+|||--+-.||.++- +. ...+|..|-- .+.+ .++-++-|- |..+.+.+ -..
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~F--gs-e~~~IriDms---e~~e---vskligsp~gyvG~e~gg---~Lt--- 653 (898)
T KOG1051 589 NPDAWFLFLGPDGVGKTELAKALAEYVF--GS-EENFIRLDMS---EFQE---VSKLIGSPPGYVGKEEGG---QLT--- 653 (898)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHC--CC-CCCEEEECHH---HHHH---HHHCCCCCCCCCCCHHHH---HHH---
T ss_conf 8885899978884138999999999972--88-6426896145---5555---653048995554630577---888---
Q ss_pred HHHHHCCCCEEEEECCCCCCCHH-HHHHHHHHHHHH-------CCCCCCCCCCCHHCCHHHHH
Q ss_conf 99974158869983344222112-468999999851-------38511000310111225688
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHIND-SLMQEISEIKSL-------TNPHEILLVADALTGQDAVH 231 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~d~-~lm~El~~i~~~-------~~p~e~~lV~da~~Gq~a~~ 231 (461)
+..+.+-|-|||+|-----|.+- +.|.++-.=.++ +.--.+++|+-+..|++.+.
T Consensus 654 eavrrrP~sVvLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~ 716 (898)
T KOG1051 654 EAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIA 716 (898)
T ss_pred HHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCHHHHH
T ss_conf 997169965999830222288899999999862740058886750464599994263166664
No 462
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=95.25 E-value=0.034 Score=37.00 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=68.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHH-----
Q ss_conf 189962344333468899999999861489507820542210047799998510347422233--2103689999-----
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI--PEQSPEKIAI----- 173 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~--~~~dp~~i~~----- 173 (461)
-.|.++|-=-+||||.++-|.+-+ ++ + |. ..+++++.-+...|-.-|... ....+.+-.+
T Consensus 8 lni~~~GhVD~GKSTL~G~Ll~~~---~~--v-----~~---~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid 74 (449)
T PTZ00336 8 MNLVVVGHVDAGKSTATGHLIYKC---GG--I-----DK---RTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITID 74 (449)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHC---CC--C-----CH---HHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEE
T ss_conf 399999277896888899999874---88--4-----78---99999999998718751432545127722322875898
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC----------HHHHHHHHHHHHHCCCC
Q ss_conf 99999974158869983344222112468999999851385110003101112----------25688889887635844
Q gi|254780711|r 174 RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG----------QDAVHLARNFDKIVDLT 243 (461)
Q Consensus 174 ~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G----------q~a~~~a~~F~~~~~i~ 243 (461)
-+..++...+.-+.|||++|--.+=.++ |..+.+.|-.+||+||.-| |---. +. ....+++.
T Consensus 75 ~~~~~f~t~~~~~~iiD~PGH~~fi~nm------i~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreH-l~-i~~~Lgv~ 146 (449)
T PTZ00336 75 IALWKFESPKSVFTIIDAPGHRDFIKNM------ITGTSQADAAILMIDSTHGGFEAGISKDGQTREH-AL-LAFTLGVK 146 (449)
T ss_pred EEEEEEECCCEEEEEEECCCHHHHHHHH------HHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHH-HH-HHHHCCCC
T ss_conf 6799997498489998689468889999------9765006767999987877410355667753999-99-99866997
Q ss_pred CEE--EEECCC
Q ss_conf 077--641157
Q gi|254780711|r 244 GII--LTRMDG 252 (461)
Q Consensus 244 giI--lTKlD~ 252 (461)
.+| ++|+|.
T Consensus 147 ~iiV~vNKmD~ 157 (449)
T PTZ00336 147 QMVVCCNKMDD 157 (449)
T ss_pred EEEEEEECCCC
T ss_conf 79999862015
No 463
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=95.25 E-value=0.12 Score=32.69 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=16.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 189962344333468899999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHL 124 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~ 124 (461)
.|.-++|.||.||||++-=||-.+
T Consensus 101 ~V~GilG~NGiGKsTalkILaGel 124 (591)
T COG1245 101 KVVGILGPNGIGKSTALKILAGEL 124 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 479987689765788999974760
No 464
>PHA00729 NTP-binding motif containing protein
Probab=95.25 E-value=0.046 Score=35.96 Aligned_cols=97 Identities=23% Similarity=0.203 Sum_probs=56.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8841899623443334688999999998-614895078205422100477999985103474222332103689999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLK-TLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~-~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
.+-.-++..|.||+||||-+-|.|+..- ...+ . -+ .-.|.++-..+ -||.. .|.....++++
T Consensus 15 ~GF~S~iifGkQG~GKTTYAlKV~~~v~~~l~~---~-~~----~~~aW~~~~n~------~~F~l---~~al~k~~~~~ 77 (228)
T PHA00729 15 NGFVSAIIFGKQGTGKTTYALKVARDVFWKLNN---L-LT----KDDAWQYAYNS------YFFEL---PDALEKIQDAI 77 (228)
T ss_pred CCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCC---C-CC----CCCHHHHHHHH------EEECH---HHHHHHHHHHH
T ss_conf 794699998367788420219999999999648---8-65----43369999876------14258---99999999998
Q ss_pred HHHHHCCCCEEEEECCCCCCC----HHHHHHHHHHHHHHCC
Q ss_conf 999741588699833442221----1246899999985138
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHI----NDSLMQEISEIKSLTN 213 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~----d~~lm~El~~i~~~~~ 213 (461)
+ .+....++|+|-||-+-. -++-|...-++.+++.
T Consensus 78 ~--~~~RiP~ii~DDAgiwLskY~w~~~~m~~Fyk~ynliR 116 (228)
T PHA00729 78 D--NDYRIPLLIFDDAGIWLSKYVWYEDYMITFYKIYNLIR 116 (228)
T ss_pred H--CCCCCCEEEEECCCHHHHHEEEHHHHHHHHHHHHHHHH
T ss_conf 5--37767779982452012410022877688999999999
No 465
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.24 E-value=0.17 Score=31.59 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=26.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 4189962344333468899999999861489507820542
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
-.++.++|++||||||.+-=|+..+.-..| .|.+-.-|.
T Consensus 35 Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~~G-~I~~~g~~i 73 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGIEKVKSG-EIFYNNQAI 73 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCE-EEEECCEEC
T ss_conf 989999999999799999999649799850-999999999
No 466
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=95.23 E-value=0.043 Score=36.20 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=54.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
|+++|-.|||||+-+-+++.- ... .+|.| .++.+++.....- ...
T Consensus 2 i~vvG~~~vGKTsli~r~~~~-----~f~------~~~~~-----------t~~~~~~~~~~~~-------------~~~ 46 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQN-----KFP------EEYIP-----------TIGVDFYTKTIEV-------------DGK 46 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHC-----CCC------CCCCC-----------CCEEEEEEEEEEE-------------CCE
T ss_conf 899997997799999999619-----999------87477-----------4135567899999-------------999
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH----CCC---CCEEEEECCC
Q ss_conf 588699833442221124689999998513851100031011122568888988763----584---4077641157
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI----VDL---TGIILTRMDG 252 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~----~~i---~giIlTKlD~ 252 (461)
.+.+.|.||+|.-. .+.+... -.-+.|-+++|.|.+- ++.++.++.+.+. .+- -=+|-||.|-
T Consensus 47 ~~~~~i~Dt~G~e~-----~~~~~~~-~~~~ad~~iivfd~~~-~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl 116 (162)
T pfam00071 47 TVKLQIWDTAGQER-----FRALRPL-YYRGAQGFLLVYDITS-RDSFENVKKWLEEILRHADDNVPIVLVGNKCDL 116 (162)
T ss_pred EEEEEEEECCCCHH-----HHHHHHH-HHCCCCCCEEECCCCC-HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
T ss_conf 99999997898720-----4678899-8625765504234898-899999999999999857988628899752474
No 467
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.22 E-value=0.14 Score=32.32 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=30.6
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 000258841899623443334688999999998614895078205422
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
+...++ ..|.+||.+||||||-+.=|+..|.-..| +|.+=..|..
T Consensus 24 l~i~~G--~~iaIvG~sGsGKSTLl~ll~gl~~p~~G-~I~idg~~i~ 68 (238)
T cd03249 24 LTIPPG--KTVALVGSSGCGKSTVVSLLERFYDPTSG-EILLDGVDIR 68 (238)
T ss_pred EEECCC--CEEEEECCCCCCHHHHHHHHHHCCCCCCC-EEEECCEECC
T ss_conf 997699--99999999999899999998238618851-8999999923
No 468
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=95.20 E-value=0.01 Score=41.03 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=59.8
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC---CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8841-89962344333468899999999861489507820542---2100477999985103474222332103689999
Q gi|254780711|r 98 PSPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV---HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAI 173 (461)
Q Consensus 98 ~~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt---~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~ 173 (461)
.+|+ -||+.||+|||||.|+=== |--.+.-.|=+-||-- ++-.++.|-+.+=+ .|..| +
T Consensus 323 ~kPqGMvLVTGPTGSGKTVSLYTa---LniLN~~~~NISTAEDPVEINLpGINQVnvNpK-~GLTF---------A---- 385 (577)
T TIGR02538 323 HKPQGMVLVTGPTGSGKTVSLYTA---LNILNTEEVNISTAEDPVEINLPGINQVNVNPK-IGLTF---------A---- 385 (577)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCCCCCCEEEEECCCCEECCCCC-CCCCH---------H----
T ss_conf 079972886266598416878763---112577674501144772464077151204667-88787---------9----
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CCCCCC-CCCCCHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999974158869983344222112468999999851---385110-00310111225688889887635844
Q gi|254780711|r 174 RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSL---TNPHEI-LLVADALTGQDAVHLARNFDKIVDLT 243 (461)
Q Consensus 174 ~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~---~~p~e~-~lV~da~~Gq~a~~~a~~F~~~~~i~ 243 (461)
.|+..|-.+.=|+|- .-|++.+-.+ +|--.+ +||++-.--+||-.+.-.--+ .||-
T Consensus 386 aALrSFLRQDPDIIM-------------VGEIRDLETAEIAiKAAqTGHLVlSTLHTNdAp~Tl~RL~N-MGia 445 (577)
T TIGR02538 386 AALRSFLRQDPDIIM-------------VGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVN-MGIA 445 (577)
T ss_pred HHHHHHCCCCCCEEE-------------EECCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHH-CCCH
T ss_conf 999864068998898-------------70666421589999984048721010001685899999975-3841
No 469
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.19 E-value=0.34 Score=29.34 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=26.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEECCC
Q ss_conf 884189962344333468899999999861489-----50782054
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKK-----KILMASLD 138 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~-----kV~lv~~D 138 (461)
.+-.++.++|++||||||-+-=++..+.-..|. +++.+.-+
T Consensus 29 ~~Ge~~~IvG~sGsGKSTLl~~i~G~~~~~~G~I~~~g~i~~v~Q~ 74 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQE 74 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 6998999999999858999999818952568952258988999587
No 470
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.18 E-value=0.12 Score=32.67 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 8418996234433346889999999986148
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK 129 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~ 129 (461)
+-..+.++|.+||||||-+-=|+..+.-..|
T Consensus 26 ~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G 56 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSG 56 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 9999999958999889999998698769986
No 471
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.18 E-value=0.015 Score=39.57 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=36.5
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf 00258841899623443334688999999998614895078205422100477
Q gi|254780711|r 94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQE 146 (461)
Q Consensus 94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~e 146 (461)
.++-.+-.++.++|+|||||||-.--|+..++-..| .|.+-..|.++-...|
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~~~l~p~~G-~V~l~g~~i~~~~~ke 73 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG-EVLLDGKDIASLSPKE 73 (258)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCHHHCCHHH
T ss_conf 688659979999899888999999998656788887-7999997245469888
No 472
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.17 E-value=0.096 Score=33.52 Aligned_cols=61 Identities=26% Similarity=0.318 Sum_probs=39.5
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 00025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV 157 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v 157 (461)
+....+ -++.++|++||||||.+-=++...+-..| .|.+-..|+.... ..++..+-+.+|+
T Consensus 22 l~i~~G--e~v~i~GpSGsGKSTLl~~i~gl~~p~sG-~i~i~g~~~~~~~-~~~~~~~Rr~iG~ 82 (214)
T cd03292 22 ISISAG--EFVFLVGPSGAGKSTLLKLIYKEELPTSG-TIRVNGQDVSDLR-GRAIPYLRRKIGV 82 (214)
T ss_pred EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCC-HHHHHHHHCCEEE
T ss_conf 798599--89999979995399999999629898864-9999999989899-7789998667499
No 473
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.17 E-value=0.07 Score=34.58 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 1000258841899623443334688999999998
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLK 125 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~ 125 (461)
.|...++ -++.+||.+||||||++--|...+.
T Consensus 36 Sf~v~~G--E~vaLvGeSGSGKSTl~~~l~gll~ 67 (623)
T PRK10261 36 SFSLQRG--ETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7698899--8999998999789999999977987
No 474
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.16 E-value=0.11 Score=33.08 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=35.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 8841899623443334688999999998614895078205422100477999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR 149 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~ 149 (461)
.+-.++.++|+||+||||..-=++-.++-..| +|.+-.-|...-...+..+
T Consensus 24 ~~Gei~~liGpNGaGKSTL~~~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~r 74 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG-SIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHH
T ss_conf 99979999999994099999999779999954-9999999999999899998
No 475
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.19 Score=31.28 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=37.2
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 100025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV 157 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v 157 (461)
.+...++ -++.++|++||||||++-=++..++-..| .|.+-..|...... .++..+-.+++.
T Consensus 20 sl~i~~G--e~~~iiG~SGsGKSTll~~i~gL~~p~~G-~I~~~g~~i~~~~~-~~~~~~r~~ig~ 81 (235)
T cd03261 20 DLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRPDSG-EVLIDGEDISGLSE-AELYRLRRRMGM 81 (235)
T ss_pred EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCH-HHHHHHHCCEEE
T ss_conf 6488799--89999999997299999999759998985-89999999998998-899997578299
No 476
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.14 E-value=0.016 Score=39.41 Aligned_cols=54 Identities=30% Similarity=0.377 Sum_probs=39.7
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 000258841899623443334688999999998614895078205422100477999
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR 149 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~ 149 (461)
+...++ .++-++|+||+||||+.-=++-.++-..| +|.+-..|..+....+..+
T Consensus 21 ~~v~~G--ei~~llGpNGAGKSTll~~i~Gl~~p~~G-~I~~~g~di~~~~~~~r~r 74 (232)
T cd03218 21 LSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKPDSG-KILLDGQDITKLPMHKRAR 74 (232)
T ss_pred EEECCC--CEEEEECCCCCCHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHH
T ss_conf 798999--59999999996199999999779999862-9999999999999999997
No 477
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.09 E-value=0.023 Score=38.24 Aligned_cols=43 Identities=33% Similarity=0.369 Sum_probs=32.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 88418996234433346889999999986148950782054221
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
.+-.++.++|+|||||||++-=|+-.++...| +|.+-.-|.++
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~Gl~~p~~G-~i~i~G~~~~~ 71 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG-EILVLGYDVVK 71 (293)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCE-EEEECCCCCCC
T ss_conf 28959999899999899999999679778864-99995862751
No 478
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.09 E-value=0.17 Score=31.63 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEECCCC-CC--CHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 025884189962344333468899999999861489-----507820542-21--0047799998510347422233210
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKK-----KILMASLDV-HR--PAAQEQLRYLGEQIQVDTLEVIPEQ 166 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~-----kV~lv~~Dt-~R--~aA~eQL~~~a~~~~v~~~~~~~~~ 166 (461)
+.-.+--++-++|.|||||||.+-=||.-+.-..|. ++.+++..+ |. .-+.|-+...+...|.+- .
T Consensus 45 FeV~kGE~vGIIG~NGAGKSTLLKiIaGI~~PTsG~V~V~Gk~sLL~lgaGf~~eLTGrENI~L~g~~lGlsk------~ 118 (549)
T PRK13545 45 FEVPEGEIVGIVGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGITK------E 118 (549)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCH------H
T ss_conf 7864898999988999989999999968988986089994689877405576977629999998899849899------9
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCC-----CCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf 3689999999999741588699833442221124689999-99851385-----11000310111225688889887635
Q gi|254780711|r 167 SPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEIS-EIKSLTNP-----HEILLVADALTGQDAVHLARNFDKIV 240 (461)
Q Consensus 167 dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~-~i~~~~~p-----~e~~lV~da~~Gq~a~~~a~~F~~~~ 240 (461)
.-.+...+-++++.... .+|.+=|. +...|...|. .+.-.++| ||++=|-|+.--+-|.+-.+.|.+.
T Consensus 119 eI~~~~deIiEFAELGd----Fid~PVKt-YSSGMkaRLgFAIA~~~dPDILIIDEaLSVGD~~F~~Kc~~rm~ef~e~- 192 (549)
T PRK13545 119 KIKEIIPEIIDFADIGK----FMYQPVKT-YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ- 192 (549)
T ss_pred HHHHHHHHHHHHHCHHH----HHHCHHHH-HCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-
T ss_conf 99998999999856788----87382634-0886899999999982499999994620057899999999999999978-
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCC
Q ss_conf 84407764115766330367778884787302615867
Q gi|254780711|r 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEK 278 (461)
Q Consensus 241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~ 278 (461)
+-|=++++- .++.+...---+.++-.||-
T Consensus 193 gkTIvfVSH---------sl~~Vk~~C~R~iWLe~G~v 221 (549)
T PRK13545 193 GKTIFFISH---------SLSQVKSFCTKALWLHYGQV 221 (549)
T ss_pred CCEEEEEEC---------CHHHHHHHCCEEEEEECCEE
T ss_conf 988999958---------88999985731063438667
No 479
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.14 Score=32.29 Aligned_cols=41 Identities=34% Similarity=0.447 Sum_probs=28.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 884189962344333468899999999861489507820542
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
.+-..|.+||.+||||||-+-=|...|.-..|. |.+=..|.
T Consensus 26 ~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i 66 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYDVDSGR-ILIDGHDV 66 (234)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEEC
T ss_conf 799999999899982999999996676678868-99999996
No 480
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.08 E-value=0.19 Score=31.25 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=60.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC---------CCCCCCCCCCHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034---------742223321036899
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ---------VDTLEVIPEQSPEKI 171 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~---------v~~~~~~~~~dp~~i 171 (461)
.|.=+-|+.||||||-|=.+|-.-.. .|++|. -.||====..|-+++.|+..+ +-+|....=.+=..+
T Consensus 13 ~iTQiYGp~G~GKTn~c~~~a~~a~~-~Gk~v~--YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~~a 89 (223)
T TIGR02237 13 IITQIYGPPGSGKTNICLILAVNAAR-QGKKVV--YIDTEGGLSPERFKQIAEDRALDPERVLSNVIVFEVFDFDEQEVA 89 (223)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEE--EEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHHHH
T ss_conf 58898758998678999999999986-189589--996289832899999863058898888415355235356789999
Q ss_pred HHHHHHHHHHC--CCCEEEEECCCCCCC
Q ss_conf 99999999741--588699833442221
Q gi|254780711|r 172 AIRATQSARDG--GYDAVILDTAGRNHI 197 (461)
Q Consensus 172 ~~~a~~~a~~~--~~D~iiiDTaGR~~~ 197 (461)
..++...+..+ .+|+|++|..--+..
T Consensus 90 i~~~~~~~~~~G~~~~LvVvDs~t~~YR 117 (223)
T TIGR02237 90 IQKTSKLIDRDGDKADLVVVDSFTALYR 117 (223)
T ss_pred HHHHHHHHHCCCCEEEEEEEECCHHHHH
T ss_conf 9999999860688331488815334542
No 481
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.053 Score=35.52 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=53.8
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH---CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 0025884189962344333468899999999861---4895078205422100477999985103474222332103689
Q gi|254780711|r 94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTL---KKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEK 170 (461)
Q Consensus 94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~---~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~ 170 (461)
.+.-.+-.++.++|+|||||||.+-=||..+... .| .+.+-..|..... ..+- -.+-+........|.-
T Consensus 27 s~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G-~i~~~g~~~~~~~-----~~~~--~~~~~v~q~~~~~~~l 98 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG-DIHYNGIPYKEFA-----EKYP--GEIIYVSEEDVHFPTL 98 (202)
T ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-EEEECCEECCHHH-----HHHH--CCEEEECCCCCCCCCC
T ss_conf 889809849999989999889999998378789875137-9999999940514-----8642--0199986732237688
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHH
Q ss_conf 9999999997415886998334422211246899999985138511000310-111225688
Q gi|254780711|r 171 IAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVH 231 (461)
Q Consensus 171 i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~ 231 (461)
.+++.++.+.....|-.+=.-+| . +.+.-.|.++.-.+-.+|++| .+.|-|...
T Consensus 99 tv~e~l~~~~~~~~~~~~~~LSg------G-qkqRv~iA~aL~~~P~illlDEPt~gLD~~~ 153 (202)
T cd03233 99 TVRETLDFALRCKGNEFVRGISG------G-ERKRVSIAEALVSRASVLCWDNSTRGLDSST 153 (202)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCH------H-HHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 09999999998465874445899------9-9999999999952998899838765689999
No 482
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.16 Score=31.84 Aligned_cols=63 Identities=24% Similarity=0.365 Sum_probs=37.6
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 100025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV 157 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v 157 (461)
.+...++ -++.++|+.||||||.+-=+|....-..| .|.+-.-|..+...-+-.+...+.++.
T Consensus 44 sl~i~~G--E~~~ivG~SGsGKSTLLr~i~GL~~p~~G-~I~~~G~~i~~~~~~~l~~~r~~~igm 106 (269)
T cd03294 44 SLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEPTSG-KVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHHCCCEEE
T ss_conf 7588899--99999989984899999999759999975-999999999999989998852564699
No 483
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.04 E-value=0.18 Score=31.39 Aligned_cols=42 Identities=36% Similarity=0.339 Sum_probs=28.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 8418996234433346889999999986148950782054221
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
.-.++.++|++||||||.+-=+|-.++-..| +|.+-..|.-+
T Consensus 27 ~GE~~~llGpSGsGKSTLlr~iaGL~~p~sG-~I~~~G~dv~~ 68 (352)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEHQTSG-HIRFHGTDVSR 68 (352)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCC
T ss_conf 9989999999984699999999769999956-99999999998
No 484
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=95.04 E-value=0.31 Score=29.65 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=45.9
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHH
Q ss_conf 100025884189962344333468899999999861489507820542210047799998510347422233-2103689
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-PEQSPEK 170 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-~~~dp~~ 170 (461)
.+...++ -++-+||..||||||.+-=|+...+-..| .|.+-..|..... -.+++.+.+.++. +|... ..-+|..
T Consensus 32 s~~i~~G--E~l~ivGeSGsGKSTL~r~i~gl~~p~sG-~I~~~g~~l~~~~-~~~~~~~rr~i~~-VfQ~~~~slnP~~ 106 (266)
T PRK10419 32 SLTLKSG--ETVALLGRSGCGKSTLARLLVGLESPSQG-NISWRGEPLAKLN-RAQRKAFRRDIQM-VFQDSISAVNPRK 106 (266)
T ss_pred EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCC-HHHHHHHHCCCEE-EEECCHHHCCHHH
T ss_conf 7588899--89999999997799999999669999962-9988999567589-9999997547389-9739136368164
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780711|r 171 IAIRATQ 177 (461)
Q Consensus 171 i~~~a~~ 177 (461)
.+.+-+.
T Consensus 107 tv~~~i~ 113 (266)
T PRK10419 107 TVREILR 113 (266)
T ss_pred HHHHHHH
T ss_conf 8999999
No 485
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.04 E-value=0.019 Score=38.83 Aligned_cols=46 Identities=30% Similarity=0.356 Sum_probs=36.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 8418996234433346889999999986148950782054221004779999851
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE 153 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~ 153 (461)
.|.+|++.|..|+||+|.++.||.++- -+ -++++|+-| |=|+.+..
T Consensus 2 ~~~iiligG~sGvGKStla~~lA~rlg----i~-~visTD~IR----evlR~~i~ 47 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRA----ID-IVLSGDYLR----EFLRPYVD 47 (197)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC----CC-EEECCHHHH----HHHHHHCC
T ss_conf 747999857998878999999999749----97-553434799----99998668
No 486
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.03 E-value=0.17 Score=31.59 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=30.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 4189962344333468899999999861489507820542210
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP 142 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~ 142 (461)
-..|.+||.+||||||.+.=|+..|.-..| +|.+-..|....
T Consensus 47 Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G-~I~idg~di~~~ 88 (257)
T cd03288 47 GQKVGICGRTGSGKSSLSLAFFRMVDIFDG-KIVIDGIDISKL 88 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCC-EEEECCEEHHHC
T ss_conf 999999999998199999999605667888-899998996879
No 487
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.03 E-value=0.32 Score=29.54 Aligned_cols=166 Identities=22% Similarity=0.263 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 999999998718-7742100025884189962344333468899999999861489507820542210047799998510
Q gi|254780711|r 76 KIVHDELVEVLG-KESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQ 154 (461)
Q Consensus 76 kiv~~eL~~lLg-~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~ 154 (461)
.-+.|++++.|. ++..+. .....|-.|.++|-.-+||.|-+-.| .. +.+ +. ++ |.
T Consensus 154 ~dLld~v~~~l~~~e~~~~-~~~~~~ikiaiiGrPNvGKSsLiN~i----lg-eeR-~I-v~-~~--------------- 209 (444)
T COG1160 154 GDLLDAVLELLPPDEEEEE-EEETDPIKIAIIGRPNVGKSSLINAI----LG-EER-VI-VS-DI--------------- 209 (444)
T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCCCEEEEEEECCCCCCHHHHHHH----CC-CCE-EE-EC-CC---------------
T ss_conf 9999999975677433444-35677508999927878705888775----06-825-98-45-99---------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC---H--HHHHHHHHHHHHHCCCCCCCCCCCHHCC---
Q ss_conf 3474222332103689999999999741588699833442221---1--2468999999851385110003101112---
Q gi|254780711|r 155 IQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHI---N--DSLMQEISEIKSLTNPHEILLVADALTG--- 226 (461)
Q Consensus 155 ~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~---d--~~lm~El~~i~~~~~p~e~~lV~da~~G--- 226 (461)
+ ..--|++.+. +..++..+++|||||--.. . .+-+.-.+.+......+-++||+||.-|
T Consensus 210 ---a----GTTRD~I~~~------~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~ 276 (444)
T COG1160 210 ---A----GTTRDSIDIE------FERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISE 276 (444)
T ss_pred ---C----CCCCCCEEEE------EEECCEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCCHH
T ss_conf ---9----8622033125------89988189999877877466412426887505467678656889999988878368
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH---------HHHHHHCCCHHHEECCCCC
Q ss_conf 2568888988763584407764115766330367---------7788847873026158672
Q gi|254780711|r 227 QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAAL---------SMRTVTGKPIKAIGTGEKI 279 (461)
Q Consensus 227 q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~al---------s~~~~~~~PI~fig~GE~~ 279 (461)
||. .+|.--.+.---.=+++-|-|.-.+--..+ -..+.-..|+.||+.+.+.
T Consensus 277 qD~-~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~ 337 (444)
T COG1160 277 QDL-RIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQ 337 (444)
T ss_pred HHH-HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf 899-9999999758974999975325785166799999999987221367727999704787
No 488
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=95.03 E-value=0.041 Score=36.35 Aligned_cols=42 Identities=40% Similarity=0.407 Sum_probs=30.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH
Q ss_conf 9962344333468899999999861489507820542210047799
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL 148 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL 148 (461)
.+++-++|+|||.+.+.++.++.. .++++++++ + |-.=++|.
T Consensus 21 ~~i~~pTGsGKT~~~~~~i~~~~~-~~~~~lvlv-p--~~~L~~Q~ 62 (103)
T pfam04851 21 GLIVMATGSGKTLTAAKLIARLLK-GKKKVLFLV-P--RKDLLEQA 62 (103)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEE-C--CHHHHHHH
T ss_conf 699958999879999999999984-699299990-8--29999999
No 489
>KOG1533 consensus
Probab=95.00 E-value=0.026 Score=37.82 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=32.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 189962344333468899999999861489507820542
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
.--+++|+.||||||-|.-.-.+|.. -|++|++|..|-
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~-~gr~~~vVNLDP 40 (290)
T KOG1533 3 FGQVVIGPPGSGKSTYCNGMSQFLSA-IGRPVAVVNLDP 40 (290)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHH-HCCCEEEEECCC
T ss_conf 50688769999853113209999997-489627995687
No 490
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.00 E-value=0.025 Score=37.99 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=22.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKT 126 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~ 126 (461)
.+|++.|..|+||||.+.|+|.-+..
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~~wa~ 26 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQ 26 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 98999827989899999999999986
No 491
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.05 Score=35.71 Aligned_cols=37 Identities=32% Similarity=0.497 Sum_probs=30.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 89962344333468899999999861489507820542
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
.|.+.|+.||||||.+--||.-+.. ++..|...+.|-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~-~i~~vi~l~kdy 39 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ-EIWRVIHLEKDY 39 (261)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH-HHHHCCCCCHHH
T ss_conf 6998269998801789999999997-200112132014
No 492
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.98 E-value=0.018 Score=39.05 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=32.4
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 000258841899623443334688999999998614895078205422
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
+.+.-.+-.++-++|+||+||||++-=|+-.+.-..| .|.+-.-|..
T Consensus 21 vsf~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~~G-~i~i~G~~~~ 67 (301)
T TIGR03522 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG-SVQVCGEDVL 67 (301)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECC
T ss_conf 0678859819999999998199999999679568977-7999275134
No 493
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=94.98 E-value=0.046 Score=35.99 Aligned_cols=135 Identities=17% Similarity=0.196 Sum_probs=76.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC----CCCCCCCHHHHHH-
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742----2233210368999-
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT----LEVIPEQSPEKIA- 172 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~----~~~~~~~dp~~i~- 172 (461)
+..--++.||-=-+||+|.++.|.+-.. . | .-| -+++++.-+++.|-+. |+-.......+=.
T Consensus 25 k~~l~~v~~GhVD~GKSTl~GrlL~~~~---~--v---~~~-----~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~ 91 (475)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTK---Q--I---YED-----QLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQ 91 (475)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCC---C--C---CHH-----HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHC
T ss_conf 9857999990557977888899999819---9--7---889-----9999999999828877722244420599889866
Q ss_pred ----HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHH---HHHCCCCCE
Q ss_conf ----9999999741588699833442221124689999998513851100031011122568888988---763584407
Q gi|254780711|r 173 ----IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNF---DKIVDLTGI 245 (461)
Q Consensus 173 ----~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F---~~~~~i~gi 245 (461)
--|..+|.-+++.++|+|++|--..=.+| +..+.+-|-.+||+||..| ...|.+.- ...+|+..+
T Consensus 92 GiTIdva~~~f~t~~r~~~i~DaPGH~~f~~NM------itGas~aD~aiLvVdA~~G--~~~QTreH~~i~~llGI~~i 163 (475)
T PRK05124 92 GITIDVAYRYFSTEKRKFIIADTPGHEQYTRNM------ATGASTCDLAILLIDARKG--VLDQTRRHSFIATLLGIKHL 163 (475)
T ss_pred CCEEEEEEEEEECCCEEEEEEECCCHHHHHHHH------HHHHHHCCEEEEEEECCCC--CHHHHHHHHHHHHHCCCCEE
T ss_conf 971695678995387689997379638778889------8888767889999989889--47888999999986599859
Q ss_pred --EEEECCCC
Q ss_conf --76411576
Q gi|254780711|r 246 --ILTRMDGD 253 (461)
Q Consensus 246 --IlTKlD~~ 253 (461)
.++|||--
T Consensus 164 IVaVNKMDlV 173 (475)
T PRK05124 164 VVAVNKMDLV 173 (475)
T ss_pred EEEEECHHCC
T ss_conf 9998504313
No 494
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=94.97 E-value=0.36 Score=29.18 Aligned_cols=96 Identities=14% Similarity=0.198 Sum_probs=66.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC--------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 62344333468899999999861489507820542210--------0477999985103474222332103689999999
Q gi|254780711|r 105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP--------AAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~--------aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
||.+.|+.-.-.+-+-|..+..+.+-+..++..++-+. ...+++..+|+++|.++... .+.||++ .-+
T Consensus 3 LV~vd~s~~s~~lir~a~rlA~~~~a~l~vl~V~~~~~~~~~~~~~~~l~~~~~la~~lga~~~~~-~~~d~~~---~I~ 78 (124)
T cd01987 3 LVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTL-PGDDVAE---AIV 78 (124)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCHHH---HHH
T ss_conf 999589850799999999999964998999999559756589799999999999999859989999-4799899---999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 9997415886998334422211246899
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHINDSLMQE 204 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~E 204 (461)
++|+.++.|.|++-+.||.....-++.-
T Consensus 79 ~~A~~~~~t~IVlG~~~~~~~~~~~~gS 106 (124)
T cd01987 79 EFAREHNVTQIVVGKSRRSRWRELFRGS 106 (124)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHCCC
T ss_conf 9999849989997689885468872388
No 495
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=94.97 E-value=0.017 Score=39.35 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=30.8
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 0002588418996234433346889999999986148950782054
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD 138 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D 138 (461)
+.+.-.+-.++-|+|+||+|||||+-=|+-.++-..| .|.+-.-|
T Consensus 24 vs~~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~sG-~v~i~G~~ 68 (304)
T PRK13537 24 LSFHVQPGECFGLLGPNGAGKTTTLKMLLGLTHPDAG-TISLCGEP 68 (304)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEE
T ss_conf 1778869959999999897299999999779568976-89999998
No 496
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.95 E-value=0.16 Score=31.92 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=20.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8418996234433346889999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYH 123 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~ 123 (461)
...++++.|+||+||||.+--++.-
T Consensus 20 ~g~~~iItGpN~sGKSt~Lr~i~l~ 44 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9868999899877579999999999
No 497
>PRK13409 putative ATPase RIL; Provisional
Probab=94.95 E-value=0.053 Score=35.51 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=24.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 588418996234433346889999999986148
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK 129 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~ 129 (461)
+.+-.|+=++|+||+||||+.-=||-.++-.-|
T Consensus 96 p~~G~v~GLiG~NGaGKST~lkILsG~l~Pn~G 128 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKSTAVKILSGELIPNLG 128 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 999878998899999899999999587148889
No 498
>TIGR00708 cobA cob(I)alamin adenosyltransferase; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid ac-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=94.93 E-value=0.31 Score=29.67 Aligned_cols=135 Identities=27% Similarity=0.260 Sum_probs=78.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC----C--CCCCCHHHHHHHHHHHCCC----C---------C
Q ss_conf 884189962344333468899999999861489507820----5--4221004779999851034----7---------4
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS----L--DVHRPAAQEQLRYLGEQIQ----V---------D 158 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~----~--Dt~R~aA~eQL~~~a~~~~----v---------~ 158 (461)
..|-|+.+.| ||=||||.+-=+|.+-.. .|.+|+||- + ..==-+++.||+.+-++.| | +
T Consensus 4 ~~G~i~v~TG-nGKGKtTAAlG~alR~lg-~G~~v~v~QF~K~akw~~GE~a~f~~~~rlhdqhGiG~~~~F~~~~~G~~ 81 (191)
T TIGR00708 4 EKGIIIVHTG-NGKGKTTAALGMALRALG-HGKKVGVIQFIKGAKWKVGEKAAFEPLGRLHDQHGIGEKVEFKVMGEGFT 81 (191)
T ss_pred CCCCEEEEEC-CCCCHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 5860789846-998366899999998740-89816898741478874778999999876543137775411223303786
Q ss_pred CCCC--CCCCHH--HHHHHHHHHHHH----HCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCH-HCCHH
Q ss_conf 2223--321036--899999999997----41588699833442-22112468999999851385110003101-11225
Q gi|254780711|r 159 TLEV--IPEQSP--EKIAIRATQSAR----DGGYDAVILDTAGR-NHINDSLMQEISEIKSLTNPHEILLVADA-LTGQD 228 (461)
Q Consensus 159 ~~~~--~~~~dp--~~i~~~a~~~a~----~~~~D~iiiDTaGR-~~~d~~lm~El~~i~~~~~p~e~~lV~da-~~Gq~ 228 (461)
-... ..++|. ++-|+++.+.++ +..||+||.|=--= +..+---++|..+..+ -+|....+||-+ -.-|+
T Consensus 82 w~~~~r~~~~~idra~AA~~aw~~a~~~~~~~~~dlvLLDE~~~~l~~GyL~veeV~~~L~-~kp~~~~vvlTGR~aP~~ 160 (191)
T TIGR00708 82 WETQDRKADTDIDRAKAAKEAWQKAKEVLADSEYDLVLLDELTVALKFGYLDVEEVVEVLQ-EKPKSQHVVLTGRGAPQE 160 (191)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHH-CCCCCCEEEEECCCCCHH
T ss_conf 4447885411588999999999999998649887764034234555348978899999985-584567788866878688
Q ss_pred HHHHHHH
Q ss_conf 6888898
Q gi|254780711|r 229 AVHLARN 235 (461)
Q Consensus 229 a~~~a~~ 235 (461)
-++.|..
T Consensus 161 L~~~AD~ 167 (191)
T TIGR00708 161 LVELADL 167 (191)
T ss_pred HHHHCCC
T ss_conf 9975151
No 499
>PRK06761 hypothetical protein; Provisional
Probab=94.93 E-value=0.049 Score=35.76 Aligned_cols=41 Identities=32% Similarity=0.473 Sum_probs=29.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCH
Q ss_conf 89962344333468899999999861489507-8205422100
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-MASLDVHRPA 143 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~-lv~~Dt~R~a 143 (461)
.|++=|+.|||||||+-+|+..|.. .|..|. ..-+|.--|+
T Consensus 4 LIiIEGlPGsGKSTta~~l~d~L~~-~g~~v~~~~Egd~~hP~ 45 (281)
T PRK06761 4 LIIIEGLPGFGKSTTAHLLNDKLSQ-LKIEVELFVEGDLNHPA 45 (281)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCC
T ss_conf 7999668999801499999999986-69853899507899961
No 500
>KOG1969 consensus
Probab=94.92 E-value=0.08 Score=34.11 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=37.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 418996234433346889999999986148950782054221004779999851
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE 153 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~ 153 (461)
..+.|++|+.|.||||- |+-..++-|++|.=|.|-.-|.|+.---+.++-
T Consensus 326 kKilLL~GppGlGKTTL----AHViAkqaGYsVvEINASDeRt~~~v~~kI~~a 375 (877)
T KOG1969 326 KKILLLCGPPGLGKTTL----AHVIAKQAGYSVVEINASDERTAPMVKEKIENA 375 (877)
T ss_pred CCEEEEECCCCCCHHHH----HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 00687536887872479----999998628548873255543478899999998
Done!