HHsearch alignment for GI: 254780711 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=96.01 E-value=0.14 Score=32.33 Aligned_cols=88 Identities=20% Similarity=0.202 Sum_probs=41.7
Q ss_pred EEEECCCCCCHHHHHHHHH-HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9962344333468899999-99986148950782054221004779999851---0347422233210368999999999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIA-YHLKTLKKKKILMASLDVHRPAAQEQLRYLGE---QIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA-~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~---~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
T Consensus 17 ~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~P-t~aL~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~-- 92 (167)
T pfam00270 17 VLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAP-TRELAEQIYEELKKLGKYLGLKVALLYGGDSPKEQ-LRKL-- 92 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH-HHHH--
T ss_conf 8998899975899999999999874778987999906-08888899988643210267640464178617889-8764--
Q ss_pred HHHCCCCEEEEECCCCCCC
Q ss_conf 9741588699833442221
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHI 197 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~ 197 (461)
T Consensus 93 --~~~~~-Ilv~Tp~~l~~ 108 (167)
T pfam00270 93 --KKGPD-ILVGTPGRLLD 108 (167)
T ss_pred --CCCCC-EEEECHHHHHH
T ss_conf --05770-79947899999