HHsearch alignment for GI: 254780711 and conserved domain: pfam00406

Probab=95.70  E-value=0.023  Score=38.25  Aligned_cols=102  Identities=17%  Similarity=0.256  Sum_probs=52.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHHHHHHH
Q ss_conf             6234433346889999999986148950782054221004779999851034742223---3210368999999999974
Q gi|254780711|r  105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV---IPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~---~~~~dp~~i~~~a~~~a~~  181 (461)
T Consensus         1 i~G~PGsGKgTqa~~La~~~----~~-~~is~GdllR~~~~~~s~-~g~~i~~-~i~~G~lvpd~i~~~l~~~~l~~~--   71 (186)
T pfam00406         1 LLGPPGAGKGTQAERIVQKY----GI-VHLSTGDLLRAEVKSGTE-LGKEAKE-YMDKGELVPDEVVVGLVKERLEQN--   71 (186)
T ss_pred             CCCCCCCCHHHHHHHHHHHH----CC-EEECHHHHHHHHHHCCCH-HHHHHHH-HHHCCCCCCHHHHHHHHHHHHCCC--
T ss_conf             91889898599999999985----99-067699999999862887-9999999-998699543099999999997074--


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             158869983344222112468999999851385110
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEI  217 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~  217 (461)
T Consensus        72 ~~~~g~iLDGfPRt~~Qa~~l~~~l~--~~~~~~~V  105 (186)
T pfam00406        72 DCKNGFLLDGFPRTVPQAEALEEMLE--YGIKLDYV  105 (186)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHH--CCCCCCEE
T ss_conf             55486687379898999999999997--49987779