HHsearch alignment for GI: 254780711 and conserved domain: pfam02492
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=98.43 E-value=3e-06 Score=67.89 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=89.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC------HHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210------368999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ------SPEKIAIRA 175 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~------dp~~i~~~a 175 (461)
T Consensus 2 v~iitGFLGsGKTTll~~ll~~~--~~~~~~avI~Ne~g~~~-iD~~l--l~~~~~~v~el~~GciCc~~~~d~~~~l~~ 76 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRDN--REGLKIAVIVNDFGETG-IDAEL--LRETGAEIVELNNGCICCTIREDLSMVLEA 76 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC--CCCCCEEEEEECCCCHH-HHHHH--HHHCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 69993488788999999999844--48984799993365302-07999--870696189974886645433369999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC-CCEEEEECCCC
Q ss_conf 9999741588699833442221124689999998513851100031011122568888988763584-40776411576
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDL-TGIILTRMDGD 253 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i-~giIlTKlD~~ 253 (461)
T Consensus 77 l~~~~~~~~d~iiIE~sGla-~p~----~i~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~~~Qi~~AD~vvlNK~Dl~ 150 (174)
T pfam02492 77 LLELKLPRLDLLFIETTGLA-CPA----PVLDLRSDLGLDGVVTVVDVKNFTEGEDIPEKAPDQIAFADLIVINKTDLA 150 (174)
T ss_pred HHHCCCCCCCEEEEECCCCC-CHH----HHHHHHHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCCEEEEEHHHCC
T ss_conf 98557899999999587667-707----777653202654599999723433002007899999987699998466537