HHsearch alignment for GI: 254780711 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.76 E-value=0.00067 Score=49.98 Aligned_cols=115 Identities=23% Similarity=0.209 Sum_probs=72.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHH--HHHHHHH
Q ss_conf 189962344333468899999999861489507820542210047799998510347422233210-3689--9999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEK--IAIRATQ 177 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~--i~~~a~~ 177 (461)
T Consensus 20 ~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~--~~~~~~R~~a~~~~v~~~~i~~~~~~~~~~~~~~~~~~ 97 (186)
T pfam03796 20 DLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMS--AEQLAERLLSSESRISSSKLRSGQLSDEDWERLAEAAG 97 (186)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC--HHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 1799996799987999999999999970996687547552--99999999998626765554125121679999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9974158869983344222112468999999851385110003101
Q gi|254780711|r 178 SARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
T Consensus 98 ~--~~~~~l~i~~~~~~-t-~~~i~~~i~~~~~~~~~~--~vvvDy 137 (186)
T pfam03796 98 E--LSEAPLYIDDTPGL-S-LSELRAQARRLKREHGLG--LIVIDY 137 (186)
T ss_pred H--HHCCCEEEECCCCC-C-HHHHHHHHHHHHHHCCCC--EEEEEH
T ss_conf 9--85398688479999-8-999999999999855998--899748