HHsearch alignment for GI: 254780711 and conserved domain: pfam09439

>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=96.61  E-value=0.0035  Score=44.53  Aligned_cols=134  Identities=15%  Similarity=0.218  Sum_probs=71.4

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
T Consensus         3 ~p-tvLllGl~~sGKT~Lf~~L~~------~~~~~T~t--S~~~-------------n~---~~~~--------------   43 (181)
T pfam09439         3 QP-AVIIAGLCDSGKTSLFTLLTT------GSVRKTVT--SQEP-------------SA---AYKY--------------   43 (181)
T ss_pred             CC-EEEEECCCCCCHHHHHHHHHC------CCCCCEEC--CCCC-------------CC---EEEE--------------
T ss_conf             88-699986899989999999975------99487588--8678-------------64---0687--------------


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             97415886998334422211246899999985138511000310111225-68888988763584407764115766330
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-AVHLARNFDKIVDLTGIILTRMDGDGRGG  257 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-a~~~a~~F~~~~~i~giIlTKlD~~akgG  257 (461)
T Consensus        44 ~~~~~~~~~lvD~PGh~klR~~~~~~~~~~~---~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~---------------  105 (181)
T pfam09439        44 MNNKGNSLTLIDFPGHVKLRYKLLETLKDSS---SLRGLVFVVDSTAFPKEVTDTAEFLYDILSI---------------  105 (181)
T ss_pred             ECCCCCEEEEEECCCCHHHHHHHHHHHHHHC---CCEEEEEEEECCCCHHHHHHHHHHHHHHHHC---------------
T ss_conf             5168966899988996899999998643002---6449999997866566799999999999844---------------


Q ss_pred             HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             36777888478730261586723210013688998773
Q gi|254780711|r  258 AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL  295 (461)
Q Consensus       258 ~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL  295 (461)
T Consensus       106 ---~~~~~~~vPvLI~cNKqD---l~~A~~~~~Ik~~L  137 (181)
T pfam09439       106 ---TELLKNGIDILIACNKQE---IFTARPPKKIKQAL  137 (181)
T ss_pred             ---HHHCCCCCCEEEEEECCC---CCCCCCHHHHHHHH
T ss_conf             ---543368997899973746---33577999999999