HHsearch alignment for GI: 254780711 and conserved domain: pfam09439
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=96.61 E-value=0.0035 Score=44.53 Aligned_cols=134 Identities=15% Similarity=0.218 Sum_probs=71.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
T Consensus 3 ~p-tvLllGl~~sGKT~Lf~~L~~------~~~~~T~t--S~~~-------------n~---~~~~-------------- 43 (181)
T pfam09439 3 QP-AVIIAGLCDSGKTSLFTLLTT------GSVRKTVT--SQEP-------------SA---AYKY-------------- 43 (181)
T ss_pred CC-EEEEECCCCCCHHHHHHHHHC------CCCCCEEC--CCCC-------------CC---EEEE--------------
T ss_conf 88-699986899989999999975------99487588--8678-------------64---0687--------------
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 97415886998334422211246899999985138511000310111225-68888988763584407764115766330
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-AVHLARNFDKIVDLTGIILTRMDGDGRGG 257 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-a~~~a~~F~~~~~i~giIlTKlD~~akgG 257 (461)
T Consensus 44 ~~~~~~~~~lvD~PGh~klR~~~~~~~~~~~---~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~--------------- 105 (181)
T pfam09439 44 MNNKGNSLTLIDFPGHVKLRYKLLETLKDSS---SLRGLVFVVDSTAFPKEVTDTAEFLYDILSI--------------- 105 (181)
T ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHC---CCEEEEEEEECCCCHHHHHHHHHHHHHHHHC---------------
T ss_conf 5168966899988996899999998643002---6449999997866566799999999999844---------------
Q ss_pred HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 36777888478730261586723210013688998773
Q gi|254780711|r 258 AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL 295 (461)
Q Consensus 258 ~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riL 295 (461)
T Consensus 106 ---~~~~~~~vPvLI~cNKqD---l~~A~~~~~Ik~~L 137 (181)
T pfam09439 106 ---TELLKNGIDILIACNKQE---IFTARPPKKIKQAL 137 (181)
T ss_pred ---HHHCCCCCCEEEEEECCC---CCCCCCHHHHHHHH
T ss_conf ---543368997899973746---33577999999999