RPSBLAST alignment for GI: 254780711 and conserved domain: TIGR00959

>gnl|CDD|162133 TIGR00959, ffh, signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. Length = 428

 Score =  568 bits (1467), Expect = e-163
 Identities = 228/426 (53%), Positives = 320/426 (75%)

Query: 2   FDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKG 61
           F++L ERL  IF+ ++G+G+++E +I   LREIR   LEADV+L+VV+ F K+V+EKA G
Sbjct: 1   FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALG 60

Query: 62  EKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIA 121
           +++L+S+ PGQ  IKIVH+ELV +LG E+  L+L    P VI++VGLQGSGKTTT  K+A
Sbjct: 61  QEVLKSLSPGQQFIKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLA 120

Query: 122 YHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181
           Y+LK  + KK+L+ + D++RPAA EQL+ LG+Q+ V    +   QSP +IA RA + A++
Sbjct: 121 YYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE 180

Query: 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD 241
            G+D VI+DTAGR  I++ LM+E++ IK + NP EILLV DA+TGQDAV+ A+ F++ + 
Sbjct: 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240

Query: 242 LTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVV 301
           LTG++LT++DGD RGGAALS+R+VTGKPIK IG GEKI+DLE F P+R+A+RILGMGD++
Sbjct: 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDIL 300

Query: 302 SLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQ 361
           SLVEKA   ++E++A   A+K+ KG+FDLED  EQ RQ +K+G + S+L+M+PGM  +K 
Sbjct: 301 SLVEKAQEVVDEEEAKKLAEKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKP 360

Query: 362 NIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTNAAKINKLLKLHR 421
           ++     D+K      AII+SMT EER NP I+  SR+KRIAAGSGT    +NKL+K   
Sbjct: 361 SLSDLELDEKQFKRIEAIISSMTPEERRNPKILNPSRRKRIAAGSGTTVQDVNKLIKRFE 420

Query: 422 QVAEMM 427
           Q+ +MM
Sbjct: 421 QMKKMM 426