RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780711|ref|YP_003065124.1| signal recognition particle
protein [Candidatus Liberibacter asiaticus str. psy62]
(461 letters)
>gnl|CDD|182793 PRK10867, PRK10867, signal recognition particle protein;
Provisional.
Length = 433
Score = 664 bits (1716), Expect = 0.0
Identities = 247/435 (56%), Positives = 322/435 (74%), Gaps = 5/435 (1%)
Query: 1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAK 60
MF++L +RL S F+ + GKG L+E DI LRE+R LEADV+L VV+ F RV+EKA
Sbjct: 1 MFESLSDRLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAV 60
Query: 61 GEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKI 120
G+++L+S+ PGQ VIKIV+DELVE+LG E+ EL+L A P VIM+VGLQG+GKTTT K+
Sbjct: 61 GQEVLKSLTPGQQVIKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKL 120
Query: 121 AYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180
A +LK KKKK+L+ + DV+RPAA EQL+ LGEQI V Q P IA A + A+
Sbjct: 121 AKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAK 180
Query: 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240
+ GYD VI+DTAGR HI++ LM E+ IK+ NP EILLV DA+TGQDAV+ A+ F++ +
Sbjct: 181 ENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEAL 240
Query: 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV 300
LTG+ILT++DGD RGGAALS+R VTGKPIK IGTGEK++DLE F PDR+A+RILGMGDV
Sbjct: 241 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDV 300
Query: 301 VSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLK 360
+SL+EKA ++E++A AKK+ KGKFDLED EQ +Q +K+GG+GS+L MLPGM ++K
Sbjct: 301 LSLIEKAQEVVDEEKAEKLAKKLKKGKFDLEDFLEQLQQMKKMGGLGSLLGMLPGMGNMK 360
Query: 361 QNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTNAAKINKLLKLH 420
+ DDK + AII SMT +ERANP I+ SRK+RIA GSGT ++N+LLK
Sbjct: 361 AQL-----DDKELKRIEAIINSMTPKERANPDILNGSRKRRIAKGSGTTVQEVNRLLKQF 415
Query: 421 RQVAEMMHSTQGLGG 435
Q+ +MM +G GG
Sbjct: 416 EQMKKMMKKMKGKGG 430
>gnl|CDD|162133 TIGR00959, ffh, signal recognition particle protein. This model
represents Ffh (Fifty-Four Homolog), the protein
component that forms the bacterial (and organellar)
signal recognition particle together with a 4.5S RNA.
Ffh is a GTPase homologous to eukaryotic SRP54 and also
to the GTPase FtsY (TIGR00064) that is the receptor for
the signal recognition particle.
Length = 428
Score = 568 bits (1467), Expect = e-163
Identities = 228/426 (53%), Positives = 320/426 (75%)
Query: 2 FDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKG 61
F++L ERL IF+ ++G+G+++E +I LREIR LEADV+L+VV+ F K+V+EKA G
Sbjct: 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALG 60
Query: 62 EKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIA 121
+++L+S+ PGQ IKIVH+ELV +LG E+ L+L P VI++VGLQGSGKTTT K+A
Sbjct: 61 QEVLKSLSPGQQFIKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLA 120
Query: 122 YHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181
Y+LK + KK+L+ + D++RPAA EQL+ LG+Q+ V + QSP +IA RA + A++
Sbjct: 121 YYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE 180
Query: 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD 241
G+D VI+DTAGR I++ LM+E++ IK + NP EILLV DA+TGQDAV+ A+ F++ +
Sbjct: 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
Query: 242 LTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVV 301
LTG++LT++DGD RGGAALS+R+VTGKPIK IG GEKI+DLE F P+R+A+RILGMGD++
Sbjct: 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDIL 300
Query: 302 SLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQ 361
SLVEKA ++E++A A+K+ KG+FDLED EQ RQ +K+G + S+L+M+PGM +K
Sbjct: 301 SLVEKAQEVVDEEEAKKLAEKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKP 360
Query: 362 NIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTNAAKINKLLKLHR 421
++ D+K AII+SMT EER NP I+ SR+KRIAAGSGT +NKL+K
Sbjct: 361 SLSDLELDEKQFKRIEAIISSMTPEERRNPKILNPSRRKRIAAGSGTTVQDVNKLIKRFE 420
Query: 422 QVAEMM 427
Q+ +MM
Sbjct: 421 QMKKMM 426
>gnl|CDD|179118 PRK00771, PRK00771, signal recognition particle protein Srp54;
Provisional.
Length = 437
Score = 420 bits (1082), Expect = e-118
Identities = 176/444 (39%), Positives = 269/444 (60%), Gaps = 9/444 (2%)
Query: 5 LQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKI 64
L E L + + GK + E + +++I+R L+ADV++++V+ SK ++E+A E+
Sbjct: 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEP 60
Query: 65 LRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHL 124
+ + P + VIKIV++ELV++LG+E+ E + P IMLVGLQGSGKTTT AK+A +
Sbjct: 61 PKGLTPREHVIKIVYEELVKLLGEET-EPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYF 119
Query: 125 KTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGY 184
K K L+A+ D +RPAA +QL+ L E+I V + +IA + +
Sbjct: 120 KKKGLKVGLVAA-DTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKK--A 176
Query: 185 DAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTG 244
D +I+DTAGR+ + + L++E+ EIK P E+LLV DA GQ A + A+ F + V + G
Sbjct: 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
Query: 245 IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLV 304
II+T++DG +GG ALS TG PIK IGTGEKI+DLE F PDR +R+LGMGD+ SL+
Sbjct: 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLL 296
Query: 305 EKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGM-PSLKQNI 363
EK L+E++ +K+ KGKF L+D+ +Q K+G + IL+MLPG+ L
Sbjct: 297 EKVEEALDEEEEEKDVEKMMKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEA 356
Query: 364 MPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTNAAKINKLLKLHRQV 423
+ + ++ + + AI+ SMT+EE NP II SR +RIA GSGT + +LLK ++ +
Sbjct: 357 LEVT--EEKLKKYKAIMDSMTEEELENPEIINASRIRRIARGSGTTVEDVRELLKYYKMM 414
Query: 424 AEMMHSTQGLGGNALTQQIMGRLK 447
+ M + G ++M +
Sbjct: 415 KKAMKQLKKGKGK--MGKLMKQFG 436
>gnl|CDD|184937 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 227 bits (580), Expect = 6e-60
Identities = 109/282 (38%), Positives = 166/282 (58%), Gaps = 11/282 (3%)
Query: 22 LSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDE 81
+ E DI + L E+ LE+DV+LEV + + ++EK G+K+ R ++V + +
Sbjct: 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEA 117
Query: 82 LVEVLGKES----IELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASL 137
L+EVL IE + P+VI+ VG+ G+GKTTT AK+AY+LK +++A+
Sbjct: 118 LLEVLSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGFSVVIAAG 176
Query: 138 DVHRPAAQEQLRYLGEQIQVDTLEVIPEQ---SPEKIAIRATQSARDGGYDAVILDTAGR 194
D R A EQL E++ V +VI + P +A A + A+ G D V++DTAGR
Sbjct: 177 DTFRAGAIEQLEEHAERLGV---KVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGR 233
Query: 195 NHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDG 254
H + +LM E+ +I +T P ++ V DAL G DAV AR F++ V + G+ILT++D D
Sbjct: 234 MHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADA 293
Query: 255 RGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILG 296
+GGAALS+ V GKPI +G G+ +DL F PD +++LG
Sbjct: 294 KGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
>gnl|CDD|130492 TIGR01425, SRP54_euk, signal recognition particle protein SRP54.
This model represents examples from the eukaryotic
cytosol of the signal recognition particle protein
component, SRP54. This GTP-binding protein is a
component of the eukaryotic signal recognition particle,
along with several other protein subunits and a 7S RNA.
Some species, including Arabidopsis, have several
closely related forms. The extreme C-terminal region is
glycine-rich and lower in complexity, poorly conserved
between species, and excluded from this model.
Length = 429
Score = 226 bits (578), Expect = 9e-60
Identities = 131/431 (30%), Positives = 225/431 (52%), Gaps = 13/431 (3%)
Query: 4 NLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEK 63
+L + S ++++ + E ++ L+EI LE+DV++++V+ + +++ E+
Sbjct: 4 DLGSSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEE 63
Query: 64 ILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYH 123
+ + +M+ V EL ++ VIM VGLQGSGKTTT K+AY+
Sbjct: 64 MASGLNKRKMIQHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYY 123
Query: 124 LKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGG 183
+ K K + D R A +QL+ + ++ E P KIA + +
Sbjct: 124 YQR-KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKEN 182
Query: 184 YDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLT 243
+D +I+DT+GR+ DSL +E+ ++ P I+ V D GQ A A+ F VD+
Sbjct: 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVG 242
Query: 244 GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303
+I+T++DG +GG ALS T PI IGTGE I+D E F +++LGMGD+ L
Sbjct: 243 SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGDIEGL 302
Query: 304 VEKAAR-NLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQN 362
++K L++ + AL +K+ +G F L D+ EQF+ K+G +G IL M+PG +
Sbjct: 303 IDKVQDLKLDDNEKALI-EKLKEGTFTLRDMYEQFQNLLKMGPLGQILSMIPG---FSTD 358
Query: 363 IMPSSFDDKT---INHHIAIIASMTKEE--RANPSII--KHSRKKRIAAGSGTNAAKINK 415
M ++++ I + I+ SMT +E + + + SR +R+A GSG + + +
Sbjct: 359 FMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFSKQPSRIQRVARGSGRSIRDVQE 418
Query: 416 LLKLHRQVAEM 426
LL+ +++ A+M
Sbjct: 419 LLEQYKKFAQM 429
>gnl|CDD|161686 TIGR00064, ftsY, signal recognition particle-docking protein FtsY.
There is a weak division between FtsY and SRP54; both
are GTPases. In E.coli, ftsY is an essential gene
located in an operon with cell division genes ftsE and
ftsX, but its apparent function is as the signal
recognition particle docking protein.
Length = 272
Score = 214 bits (548), Expect = 3e-56
Identities = 103/276 (37%), Positives = 156/276 (56%), Gaps = 11/276 (3%)
Query: 26 DISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEV 85
D + E+ LE+DV EVV+ + ++++ KG+K+ + +++ +I+ + L E+
Sbjct: 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKV----KDAELLKEILKEYLKEI 57
Query: 86 LGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQ 145
L + +EL + P VI+ VG+ G GKTTT AK+A LK + K +L+A+ D R AA
Sbjct: 58 LKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRAAAI 116
Query: 146 EQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEI 205
EQL +++ VD ++ P +A A Q A+ D V++DTAGR +LM E+
Sbjct: 117 EQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDEL 176
Query: 206 SEIK------SLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAA 259
+IK P E+LLV DA TGQ+A+ A+ F++ V LTGIILT++DG +GG
Sbjct: 177 KKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 236
Query: 260 LSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRIL 295
LS+ PIK IG GEKI+DL F D +
Sbjct: 237 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272
>gnl|CDD|182441 PRK10416, PRK10416, signal recognition particle-docking protein
FtsY; Provisional.
Length = 318
Score = 207 bits (529), Expect = 6e-54
Identities = 111/310 (35%), Positives = 175/310 (56%), Gaps = 24/310 (7%)
Query: 1 MFDNLQERLGSIFQNITGK--GSLSETDIS-NTLREIRRTFLEADVSLEVVQSFSKRVQE 57
F+ L++ L +N G ++ I + L E+ +EADV +E + + ++E
Sbjct: 16 WFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRE 75
Query: 58 KAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTT 117
+ K + + + + + +++ +EL E+L L++ P VI++VG+ G GKTTT
Sbjct: 76 RVKRKNL----KDPEELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTI 131
Query: 118 AKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI--PEQS-PEKIAIR 174
K+A+ K + KK+L+A+ D R AA EQL+ GE++ V VI E + P +A
Sbjct: 132 GKLAHKYKA-QGKKVLLAAGDTFRAAAIEQLQVWGERVGVP---VIAQKEGADPASVAFD 187
Query: 175 ATQSARDGGYDAVILDTAGR--NHINDSLMQEISEIKSLTN------PHEILLVADALTG 226
A Q+A+ G D +I+DTAGR N N LM+E+ +IK + PHE+LLV DA TG
Sbjct: 188 AIQAAKARGIDVLIIDTAGRLHNKTN--LMEELKKIKRVIKKADPDAPHEVLLVLDATTG 245
Query: 227 QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFF 286
Q+A+ A+ F + V LTGIILT++DG +GG ++ G PIK IG GE I+DL+ F
Sbjct: 246 QNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFD 305
Query: 287 PDRIANRILG 296
+ + +LG
Sbjct: 306 AEEFVDALLG 315
>gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 88.4 bits (220), Expect = 4e-18
Identities = 66/271 (24%), Positives = 130/271 (47%), Gaps = 28/271 (10%)
Query: 33 EIRRTFLEADVSLEVVQSFSKRVQEK--AKGEKILRSIQPGQMVIKIVHDELVEVLGKES 90
E+ + + +S E+ + K + E + R + +++ ++ + ++L +
Sbjct: 165 ELYKRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLL--ELLANMIPVRVEDILKQGG 222
Query: 91 IELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTL-KKKKILMASLDVHRPAAQEQLR 149
+ + LVG G GKTTT AK+A L KKK+ + +LD +R A EQL+
Sbjct: 223 V-----------VALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLK 271
Query: 150 YLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISE-I 208
+ + + V + K A + RD D +++DTAGR+ + L++E+ I
Sbjct: 272 TYAKIMGIPVEVVYDPKELAK----ALEQLRD--CDVILIDTAGRSQRDKRLIEELKALI 325
Query: 209 KSLTNPHEILLVADALTGQ--DAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVT 266
+ P ++ LV + T + D + ++F + L G+I T++D G+ LS+ +
Sbjct: 326 EFSGEPIDVYLVL-SATTKYEDLKDIYKHF-SRLPLDGLIFTKLDETSSLGSILSLLIES 383
Query: 267 GKPIKAIGTGEKI-NDLENFFPDRIANRILG 296
G PI + G+++ +D++ P+ + +LG
Sbjct: 384 GLPISYLTNGQRVPDDIKVANPEELVRLLLG 414
>gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF.
Length = 282
Score = 69.6 bits (171), Expect = 1e-12
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 24/177 (13%)
Query: 21 SLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD 80
L+ ++ L A VS E+ + +++ E+A E R
Sbjct: 126 GLAWLQRDPEGAKLLERLLRAGVSPELARELLEKLPERADAEDAWR-------------- 171
Query: 81 ELVEVLGKESIELDLNAPS---PLVIMLVGLQGSGKTTTTAKIAYHLK-TLKKKKILMAS 136
L E L K VI LVG G GKTTT AK+A KK+ + +
Sbjct: 172 WLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231
Query: 137 LDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAG 193
D +R A EQL+ + + V ++V + P+++ +A RD D +++DTAG
Sbjct: 232 TDTYRIGAVEQLKTYAKILGVP-VKVA--RDPKELR-KALDRLRD--KDLILIDTAG 282
>gnl|CDD|183360 PRK11889, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 436
Score = 66.2 bits (161), Expect = 2e-11
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Query: 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV 162
I L+G G GKTTT AK+A+ KKK + + D R +QL+ + I + + V
Sbjct: 244 IALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV 302
Query: 163 IPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVAD 222
E + + + AR D +++DTAG+N+ ++E+ E P I L
Sbjct: 303 RDEAAMTRALTYFKEEAR---VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLS 359
Query: 223 A-LTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI 279
A + +D + + NF K + + GI+ T+ D G L + V+ PI + G+ +
Sbjct: 360 ASMKSKDMIEIITNF-KDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416
>gnl|CDD|75717 PRK06731, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 270
Score = 64.4 bits (156), Expect = 7e-11
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 6/222 (2%)
Query: 59 AKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTA 118
A EK+ + M+ + V + ++E + ++ I L+G G GKTTT A
Sbjct: 34 AYAEKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLA 93
Query: 119 KIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS 178
K+A+ KKK + + D R +QL+ + I + + V E + + +
Sbjct: 94 KMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152
Query: 179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA-LTGQDAVHLARNFD 237
AR D +++DTAG+N+ ++E+ E P I L A + +D + + NF
Sbjct: 153 AR---VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF- 208
Query: 238 KIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI 279
K + + GI+ T+ D G L + V+ PI + G+ +
Sbjct: 209 KDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 250
>gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 407
Score = 60.1 bits (145), Expect = 1e-09
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 13/215 (6%)
Query: 87 GKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-MASLDVHRPAAQ 145
GK ++E + + +I L+G G GKTTT K+ + L LK+ + + + D R A
Sbjct: 193 GKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAV 250
Query: 146 EQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEI 205
EQ + +++ V E+I SP ++ D +++DT GRN++ + + EI
Sbjct: 251 EQFQGYADKLDV---ELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEI 307
Query: 206 SEIKSLTNPH-EILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRT 264
S + +P + + D + + +I + G I+T+MD R G ++
Sbjct: 308 SAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQ 366
Query: 265 VTGKPIKAIGTGEKINDLENFFPDR---IANRILG 296
T P+ + G+ I EN F + +A R +G
Sbjct: 367 ETNLPVLYMTDGQNIT--ENIFRPKSRWLAERFVG 399
>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 59.6 bits (144), Expect = 2e-09
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 12/202 (5%)
Query: 85 VLGKESIELDLNAPSPL----VIMLVGLQGSGKTTTTAKIAYH-LKTLKKKKILMASLDV 139
+LG S L + PL VI LVG G+GKTTT AK+A + + + + D
Sbjct: 331 MLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390
Query: 140 HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIND 199
R +EQL G Q+ + E +S + R RD Y V++DTAG +
Sbjct: 391 QRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER----LRD--YKLVLIDTAGMGQRDR 444
Query: 200 SLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAA 259
+L +++ +++ +L++ D + R F G++LT++D GR G+A
Sbjct: 445 ALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRFGSA 503
Query: 260 LSMRTVTGKPIKAIGTGEKIND 281
LS+ PI + G+++ D
Sbjct: 504 LSVVVDHQMPITWVTDGQRVPD 525
>gnl|CDD|173186 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 53.3 bits (128), Expect = 1e-07
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 16/185 (8%)
Query: 102 VIMLVGLQGSGKTTTTAKIA--YHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT 159
V+ LVG G GKTTTTAK+A + ++ + + D R A EQLR G + V
Sbjct: 187 VLALVGPTGVGKTTTTAKLAARCVARE-GADQLALLTTDSFRIGALEQLRIYGRILGV-- 243
Query: 160 LEVIPEQSPEKIA-IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEIL 218
P + + A +R +A G V++DT G + + ++ ++I+ + + P L
Sbjct: 244 ----PVHAVKDAADLRFALAAL-GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRL 298
Query: 219 LVADALTGQDA----VHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIG 274
L+ +A + D VH R+ D+ G I+T++D G AL P+ +
Sbjct: 299 LLLNAASHGDTLNEVVHAYRH-GAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVS 357
Query: 275 TGEKI 279
TG+K+
Sbjct: 358 TGQKV 362
>gnl|CDD|173185 PRK14722, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 374
Score = 51.6 bits (123), Expect = 4e-07
Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 16/188 (8%)
Query: 102 VIMLVGLQGSGKTTTTAKIAYH-LKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL 160
V L+G G GKTTTTAK+A + K+ + + D +R EQLR G+ + V +
Sbjct: 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV-PV 197
Query: 161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLV 220
+ + ++A+ ++ V++DT G + + ++ +I+ + P + LL+
Sbjct: 198 HAVKDGGDLQLALAELRNKH-----MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLL 252
Query: 221 ADALTGQDAVH---------LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIK 271
+A + D ++ + + DL G ILT++D G L P+
Sbjct: 253 LNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVH 312
Query: 272 AIGTGEKI 279
+ TG+K+
Sbjct: 313 YVSTGQKV 320
>gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 432
Score = 50.3 bits (120), Expect = 9e-07
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 78 VHDELVEVLGKE-SIELDLNAPSPL----VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKI 132
V + V L + S++ DL + + V+ VG GSGKTT+ AK+A K +
Sbjct: 196 VTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSV 255
Query: 133 LMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTA 192
+ + D +R AA EQL+ + + +P + I ARDG + +++DTA
Sbjct: 256 SLYTTDNYRIAAIEQLKRYADTMG------MPFYPVKDIKKFKETLARDGS-ELILIDTA 308
Query: 193 GRNHINDSLMQEISEIKSL---TNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTR 249
G +H N ++ + S + E LLV + + + ++ I+LT+
Sbjct: 309 GYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368
Query: 250 MD 251
+D
Sbjct: 369 LD 370
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 47.8 bits (113), Expect = 5e-06
Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 14/154 (9%)
Query: 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD 158
VI++VG GSGKTT +A L ++ + +QL + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGP-PGGGVIYIDGEDILEEVLDQL------LLII 53
Query: 159 TLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHE-- 216
S E A AR D +ILD + + +
Sbjct: 54 VGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS 113
Query: 217 -----ILLVADALTGQDAVHLARNFDKIVDLTGI 245
++L + L R FD+ + L I
Sbjct: 114 EKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 40.3 bits (94), Expect = 0.001
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 102 VIMLVGLQGSGKTTTTAKIAYH-LKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL 160
V L+G G GKTTTTAK+A + K+ + + D +R EQLR G+ + V ++
Sbjct: 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGV-SV 251
Query: 161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLV 220
I + + ++ + + G V++DT G + + L ++I+ + + LL+
Sbjct: 252 RSIKDIADLQLMLHELR-----GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLL 306
Query: 221 ADAL-TGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAAL 260
+A +G + + + G I+T++D G AL
Sbjct: 307 LNATSSGDTLDEVISAYQG-HGIHGCIITKVDEAASLGIAL 346
>gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 37.7 bits (88), Expect = 0.007
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKK--KKILMASLDVHRPAAQEQLRYLGEQIQV 157
V L+G G GKTTTTAK+A ++ K+ + + D +R EQLR G+ + V
Sbjct: 258 VFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314
>gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 388
Score = 37.2 bits (86), Expect = 0.008
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 100 PLVIMLVGLQGSGKTTTTAKIA--YHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQ 156
V +LVG G GKTTT AK+A Y + + K I + ++D +R A++Q++ G+ +
Sbjct: 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG 233
Query: 157 VDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAG---RNHINDSLMQEI 205
IP ++ E + + +D V++DT G ++ + + M+E+
Sbjct: 234 ------IPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEMKEL 279
>gnl|CDD|178393 PLN02796, PLN02796, D-glycerate 3-kinase.
Length = 347
Score = 35.5 bits (82), Expect = 0.028
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA-QEQLR 149
PLVI + QG GKTT + Y ++ ++ D + AA Q +L
Sbjct: 97 EIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLA 150
>gnl|CDD|178608 PLN03046, PLN03046, D-glycerate 3-kinase; Provisional.
Length = 460
Score = 34.9 bits (80), Expect = 0.049
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 22/107 (20%)
Query: 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ------------ 147
PLVI QG GKTT + Y + +K + S+D A+ Q
Sbjct: 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATL-SIDDFYLTAEGQAELRERNPGNAL 270
Query: 148 LRYLGE------QIQVDTLEVIPEQSPEKIAI---RATQSARDGGYD 185
L G Q V+TLE + + + E I + R +SA G D
Sbjct: 271 LELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGD 317
>gnl|CDD|162382 TIGR01479, GMP_PMI, mannose-1-phosphate
guanylyltransferase/mannose-6-phosphate isomerase. This
enzyme is known to be bifunctional, as both
mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and
mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in
Pseudomonas aeruginosa, Xanthomonas campestris, and
Gluconacetobacter xylinus. The literature on the enzyme
from E. coli attributes mannose-6-phosphate isomerase
activity to an adjacent gene, but the present sequence
has not been shown to lack the activity. The PMI domain
is C-terminal.
Length = 468
Score = 33.5 bits (77), Expect = 0.12
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 140 HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHIND 199
HR EQLR +G+ LE + + IA+ A +AR G D ++L A + I D
Sbjct: 59 HRFIVAEQLREIGKLASNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITD 118
Query: 200 S 200
Sbjct: 119 E 119
>gnl|CDD|162196 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase. A
close homolog, scoring just below the trusted cutoff, is
found (with introns) in Arabidopsis thaliana. Its role
is unknown.
Length = 464
Score = 32.3 bits (74), Expect = 0.25
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 74 VIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQG-SGKTTTTAKIAYHLKTLKKKKI 132
V I+ +L L + PS + ++G+ G +GKTTTT+ IA L+ L KK
Sbjct: 58 VPVIIVPDLRHALSSLAAAF-YGHPSK-KLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTG 115
Query: 133 LM 134
L+
Sbjct: 116 LI 117
>gnl|CDD|163179 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria.
Length = 650
Score = 31.2 bits (71), Expect = 0.58
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 87 GKESIELDLNAPSPLVIMLVGLQGSGKTTT 116
G+++ +L ++P P +I++ GL G+GKTT
Sbjct: 16 GRQTFDLSPSSPKP-IILIGGLNGAGKTTL 44
>gnl|CDD|161782 TIGR00235, udk, uridine kinase. Model contains a number of longer
eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below.
Length = 207
Score = 31.2 bits (71), Expect = 0.64
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD 138
P ++I + G GSGKTT KI + L K +I++ S D
Sbjct: 4 PKGIIIGIGGGSGSGKTTVARKIY---EQLGKLEIVIISQD 41
>gnl|CDD|168091 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 30.4 bits (69), Expect = 0.96
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKI 132
P+ VI + GL GSGKTT IA L K K
Sbjct: 5 PNGYVIWITGLAGSGKTT----IAKALYERLKLKY 35
>gnl|CDD|134018 PHA02518, PHA02518, ParA-like protein; Provisional.
Length = 211
Score = 29.8 bits (67), Expect = 1.3
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 110 GSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQ-EQLRYLGEQIQVDTLEVIPEQSP 168
G+GKTT +A L K+L+ LD + + R GE +IP
Sbjct: 11 GAGKTTVATNLASWLH-ADGHKVLLVDLDPQGSSTDWAEAREEGE-------PLIPVVRM 62
Query: 169 EKIAIRATQSARDGGYDAVILDTAGR 194
K +IRA GYD V++D A +
Sbjct: 63 GK-SIRADLPKVASGYDYVVVDGAPQ 87
>gnl|CDD|184709 PRK14494, PRK14494, putative molybdopterin-guanine dinucleotide
biosynthesis protein MobB/FeS domain-containing protein
protein; Provisional.
Length = 229
Score = 29.9 bits (68), Expect = 1.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 102 VIMLVGLQGSGKTTTTAKIAYHLK 125
I ++G + SGKTT KI +LK
Sbjct: 3 AIGVIGFKDSGKTTLIEKILKNLK 26
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases.
Length = 188
Score = 29.6 bits (67), Expect = 1.7
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 102 VIMLVGLQGSGKTTTTAKIA--YHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI 155
+I L G GSGK+T +A YH + KI ++ PA ++ + + G QI
Sbjct: 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQI 56
>gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein.
Length = 2052
Score = 29.4 bits (65), Expect = 1.8
Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 12/191 (6%)
Query: 141 RPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGR--NHIN 198
R AQ+ ++ E+++ + + EQ + ++ ++ R LDTA R +N
Sbjct: 505 RAEAQQYMQSQAEELRAEVERALGEQQGDDAFKQSAEAVRAAV--KTQLDTAARFTPQVN 562
Query: 199 DSLMQEISEIKSL------TNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDG 252
D+ + ++ T P + ++V + FD+ G +L G
Sbjct: 563 DAYSSMVGNFYAVQAARLGTTPEALFQQYPLRVAAESVAGGQQFDQEHGPFGPVLRDFQG 622
Query: 253 DGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLN 312
D +G A + +G+ I A+ + I D++ + + R G G + L + L+
Sbjct: 623 DAKGAIAKLLEMKSGEAIGALHHPD-IGDIDLVWGEEGTRRSDGYG-LAKLAKWHPEVLD 680
Query: 313 EKQAALTAKKI 323
+ Q L+A K+
Sbjct: 681 DLQGILSAMKV 691
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 29.2 bits (65), Expect = 2.2
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 16/128 (12%)
Query: 15 NITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQ-- 72
++TG + E +S+T I+RT +E V+ + +G + GQ
Sbjct: 220 SLTGSIATGEHILSHTAPSIKRTHMELGGKAPVIVFDDADIDAVVEGVRTFGFYNAGQDC 279
Query: 73 ------MVIKIVHDELVEVLGKESIELDLNAP-------SPLVIMLVGLQGSGKTTTTAK 119
+ ++D LVE LG L AP PL L L+ K AK
Sbjct: 280 TAACRIYAQRGIYDTLVEKLGAAVATLKSGAPDDESTELGPL-SSLAHLERVMKAVEEAK 338
Query: 120 IAYHLKTL 127
H+K +
Sbjct: 339 ALGHIKVI 346
>gnl|CDD|163066 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
Members of this protein family resemble the widely
distributed ATP-dependent protease La, also called Lon
and LonA. It resembles even more closely LonB, which is
a LonA paralog found in genomes if and only if the
species is capable of endospore formation (as in
Bacillus subtilis, Clostridium tetani, and select other
members of the Firmicutes) and expressed specifically in
the forespore compartment. Members of this family are
restricted to a subset of spore-forming species, and are
very likely to participate in the program of endospore
formation. We propose the designation LonC.
Length = 615
Score = 29.4 bits (66), Expect = 2.3
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 31 LREIRRTFLEADVSLEVVQSFSKRVQ-EKAKGEKILRSIQPGQMVIKIVHDELVEVLGKE 89
L EIR L+ + E + K + EK + +K+ +S Q + E++G+E
Sbjct: 106 LEEIRLQVLKEEKGPENSSTLKKLERLEKLEKKKLHKSAQS-----LLRPRAFSEIVGQE 160
Query: 90 ----SIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK 131
++ + +P P I+L G G GK TT A++A L+ KK K
Sbjct: 161 RAIKALLAKVASPFPQHIILYGPPGVGK-TTAARLA--LEEAKKLK 203
>gnl|CDD|163271 TIGR03453, partition_RepA, plasmid partitioning protein RepA.
Members of this family are the RepA (or ParA) protein
involved in replicon partitioning. All known examples
occur in bacterial species with two or more replicons,
on a plasmid or the smaller chromosome. Note that an
apparent exception may be seen as a pseudomolecule from
assembly of an incompletely sequenced genome. Members of
this family belong to a larger family that also includes
the enzyme cobyrinic acid a,c-diamide synthase, but
assignment of that name to members of this family would
be in error.
Length = 387
Score = 29.2 bits (66), Expect = 2.4
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 110 GSGKTTTTAKIAYHLKTLKKKKILMASLD 138
GSGKTTT A +A +L L+ ++L LD
Sbjct: 115 GSGKTTTAAHLAQYL-ALRGYRVLAIDLD 142
>gnl|CDD|183452 PRK12337, PRK12337, 2-phosphoglycerate kinase; Provisional.
Length = 475
Score = 29.0 bits (65), Expect = 2.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 97 APSPLVIMLVGLQGSGKTTTTAKIAYHL 124
P PL +++ G+ G GK+ + +AY L
Sbjct: 252 PPRPLHVLIGGVSGVGKSVLASALAYRL 279
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 29.2 bits (66), Expect = 2.6
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 87 GKESI--ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA 144
G + I +L L+ P+ + L+G G GK+T A L + + + + ++
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGDKPISMLSS 71
Query: 145 QEQLRYLGEQIQVDTLEVIPEQ--SPEKIAIR 174
++ R L ++P+ +PE I +R
Sbjct: 72 RQLARRLA---------LLPQHHLTPEGITVR 94
>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional.
Length = 388
Score = 29.1 bits (65), Expect = 2.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 126 TLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL--EVIPEQSPEKIAIR 174
TL+ + L A + VH +AQ+ L YL Q V T+ +PE +IA +
Sbjct: 242 TLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKK 292
>gnl|CDD|178416 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
reductase.
Length = 460
Score = 29.0 bits (65), Expect = 2.8
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 175 ATQSARDGGYDAV------ILDTAGRNHINDSLMQEISEIKSL 211
ATQ +D Y V +L G N N S +QEI+E K +
Sbjct: 347 ATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGI 389
>gnl|CDD|115374 pfam06712, DUF1199, Protein of unknown function (DUF1199). This
family consists of several hypothetical Feline
immunodeficiency virus (FIV) proteins. Members of this
family are typically around 67 residues long and are
often annotated as ORF3 proteins. The function of this
family is unknown.
Length = 52
Score = 28.7 bits (64), Expect = 3.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 8 RLGSIFQNITGKGSLSETDISNTLREIRRTFL 39
R +IF N G GS+ + IS+ R IR FL
Sbjct: 15 RSNNIFTNNQGSGSMETSTISSPSRRIRNNFL 46
>gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 28.2 bits (64), Expect = 4.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 101 LVIMLVGLQGSGKTTTTAKIAYHL 124
++I + G GSGKTT +A L
Sbjct: 1 MIITISGPPGSGKTTVARLLAEKL 24
>gnl|CDD|172963 PRK14490, PRK14490, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MobA;
Provisional.
Length = 369
Score = 28.1 bits (63), Expect = 5.2
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 100 PLVIMLVGLQGSGKTTTTAKIAYHLKT 126
P I G GSGKTT + L
Sbjct: 5 PFEIAFCGYSGSGKTTLITALVRRLSE 31
>gnl|CDD|164956 PHA02561, D, tail protein; Provisional.
Length = 351
Score = 28.1 bits (63), Expect = 5.4
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 31/127 (24%)
Query: 161 EVIPEQSPEKIAIRAT--------QSARDGGYDAVILDT-----AGRNHINDSLMQEIS- 206
EV +P+ + IRA +S R+ + L AGRN++ + ++
Sbjct: 91 EVEHSGAPDTVTIRARSADFRGTLRSRREKSWHRTTLGDIVRAIAGRNNLTPRVAPALAG 150
Query: 207 -EIKSLTNPHEILLVADALTGQDAV---HLARNFD---KIVDLTGIILTRMDGDGRGGAA 259
I + E DA LA+ +D K+ + G G
Sbjct: 151 IPIDHIDQTQE----------SDASFLTRLAKRYDAVAKVKGGKLLFAPAGQGKTASGKQ 200
Query: 260 LSMRTVT 266
L + T+T
Sbjct: 201 LPVITLT 207
>gnl|CDD|163010 TIGR02773, addB_Gpos, ATP-dependent nuclease subunit B. DNA repair
is accomplished by several different systems in
prokaryotes. Recombinational repair of double-stranded
DNA breaks involves the RecBCD pathway in some lineages,
and AddAB (also called RexAB) in other. The AddA protein
is conserved between the firmicutes and the
alphaproteobacteria, while the partner protein is not.
Nevertheless, the partner is designated AddB in both
systems. This model describes the AddB protein as found
Bacillus subtilis and related species. Although the RexB
protein of Streptococcus and Lactococcus is considered
to be orthologous, functionally equivalent, and merely
named differently, all members of this protein family
have a P-loop nucleotide binding motif GxxGxGK[ST] at
the N-terminus, unlike RexB proteins, and a CxxCxxxxxC
motif at the C-terminus, both of which may be relevant
to function.
Length = 1158
Score = 27.8 bits (62), Expect = 5.6
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 38 FLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDL 95
FLE + ++ E + E+ Q VI+++ DE+VEVLG E ++L+
Sbjct: 502 FLEELDLPDKLEKHRDYFDEDGRHEEAREYEQIWDAVIQLL-DEMVEVLGNEEMDLNR 558
>gnl|CDD|169652 PRK09087, PRK09087, hypothetical protein; Validated.
Length = 226
Score = 27.7 bits (62), Expect = 6.2
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 96 NAPSPLVIMLVGLQGSGKT 114
N PSP+V+ L G GSGKT
Sbjct: 41 NWPSPVVV-LAGPVGSGKT 58
>gnl|CDD|116198 pfam07579, DUF1548, Domain of Unknown Function (DUF1548). This
family appears to be found only in a small family of
Chlamydia proteins.
Length = 135
Score = 27.7 bits (62), Expect = 6.2
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 308 ARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGG---IGSIL-RMLPGMPSLKQNI 363
RNL+ T++ + + L ++F + G + IL + L P K +
Sbjct: 28 NRNLDALTLRQTSRLYPQKHELYDRLKKRFLNAYRNSGSNLVNYILDQFLTSSPEQKAAL 87
Query: 364 MPSSFDDKTI-----NHHIAIIASMTKEERANPS 392
DD T H I++ + ++ +
Sbjct: 88 RNYLLDDLTAINLPETEHADIVSELFYDDNYELN 121
>gnl|CDD|183905 PRK13233, nifH, nitrogenase reductase; Reviewed.
Length = 275
Score = 27.9 bits (62), Expect = 6.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV 162
I + G G GK+TTT A + KK+ + D P A LG + Q ++
Sbjct: 5 IAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCD---PKADSTRLILGGKPQTTMMDT 61
Query: 163 IPEQSPEKI 171
+ E EK+
Sbjct: 62 LRELGEEKV 70
>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional.
Length = 182
Score = 27.9 bits (62), Expect = 6.3
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 15/61 (24%)
Query: 103 IMLVGLQGSGKT------------TTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRY 150
I++VGL +GKT TT I ++++T++ K + DV Q++LR
Sbjct: 20 ILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDV---GGQDKLRP 76
Query: 151 L 151
L
Sbjct: 77 L 77
>gnl|CDD|162176 TIGR01052, top6b, DNA topoisomerase VI, B subunit. This model
describes DNA topoisomerase VI, an archaeal type II DNA
topoisomerase (DNA gyrase).
Length = 488
Score = 27.9 bits (62), Expect = 6.5
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 207 EIKSLTNPHEILLVADALTGQDAVHLARNFDKIV---DLTGIILTR-MDGDGRGGAALSM 262
EI+ + H + V D G ++ + F K++ II +R G G GA L
Sbjct: 56 EIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYS 115
Query: 263 RTVTGKPIKAI-GTGEKI 279
+ TGKP+K I TG +I
Sbjct: 116 QMTTGKPVKVISSTGGEI 133
>gnl|CDD|162351 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation.
Length = 343
Score = 27.7 bits (62), Expect = 6.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL 133
I++ G GSGK+TT A + ++ I+
Sbjct: 125 ILVTGPTGSGKSTTLASMIDYINKNAAGHII 155
>gnl|CDD|178789 PRK00007, PRK00007, elongation factor G; Reviewed.
Length = 693
Score = 27.8 bits (63), Expect = 6.8
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 12/44 (27%)
Query: 112 GKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA------QEQLR 149
GKTTTT +I ++ T KI +VH AA QEQ R
Sbjct: 22 GKTTTTERILFY--TGVNHKI----GEVHDGAATMDWMEQEQER 59
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo and
salvage pathways of DTTP synthesis. Catalytic activity:
ATP + thymidine 5'-phosphate = ADP + thymidine
5'-diphosphate.
Length = 195
Score = 27.7 bits (62), Expect = 7.2
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL 133
I++ G+ G+GKTT + L+ +
Sbjct: 6 IVIEGIDGAGKTTQANLLKKLLQENGYDVLF 36
>gnl|CDD|148176 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several
bacterial zeta toxin proteins. Zeta toxin is thought to
be part of a postregulational killing system in
bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 27.6 bits (62), Expect = 7.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 99 SPLVIMLVGLQGSGKTTTTAKI 120
P+ ++L G G+GKT +
Sbjct: 11 RPVAVLLGGQPGAGKTELARAL 32
>gnl|CDD|117696 pfam09140, MipZ, ATPase MipZ. MipZ is an ATPase that forms a
complex with the chromosome partitioning protein ParB
near the chromosomal origin of replication. It is
responsible for the temporal and spatial regulation of
FtsZ ring formation.
Length = 261
Score = 27.3 bits (61), Expect = 7.9
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 28/108 (25%)
Query: 110 GSGKTTTTAKIAYHLKT-LKKKKILMASLDV-HRPAAQEQL-RYLGEQ------------ 154
GSGK+TT A H+ L +A++D+ R Q L RY+ +
Sbjct: 11 GSGKSTT----AVHVAVALLYLGARVATIDLDLR---QRTLTRYIENRAATAERTGLDLP 63
Query: 155 ------IQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNH 196
+ D EV +S + + + + D +++DT G +
Sbjct: 64 VPKHLCLPDDVSEVFDGESADDARLEEAVADLEQDADFIVIDTPGSDS 111
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 27.4 bits (61), Expect = 7.9
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 73 MVIKIVHDELVEVLGKESI--ELDLNAPSPLVIMLVGLQGSGKTTTTAKIA 121
M I+I + + G+ + ++ L+ PS ++ L+G GSGKTT IA
Sbjct: 1 MSIEI--ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA 49
>gnl|CDD|151520 pfam11075, DUF2780, Protein of unknown function VcgC/VcgE
(DUF2780). This is a bacterial family of
uncharacterized proteins.
Length = 168
Score = 27.3 bits (61), Expect = 8.3
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 21/86 (24%)
Query: 303 LVEKAARNLNEKQAALTAKKIAKGKFD---LEDLAEQF--RQTQKIGGIGSILRM----- 352
+ K+ + + A ++A + L Q Q Q GG G++L +
Sbjct: 19 DLAKSRAGSSSEALKGQAAQVAATTETSDLVGSLMSQLGVSQEQAAGGAGALLALAQNNL 78
Query: 353 -----------LPGMPSLKQNIMPSS 367
+PG+ SL S
Sbjct: 79 SGDDFSELSKLIPGLDSLLGAAPLDS 104
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. Mutations have
also been found that do not phosphorylate the
periplasmic binding proteins, yet still allow transport.
The ATPase activity of this protein seems to be
necessary, however.
Length = 300
Score = 27.4 bits (61), Expect = 8.3
Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 32/200 (16%)
Query: 82 LVEVLGKESIELDLNAPSP-----LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS 136
LVE E+ +L L+ P + + G G+GK+T + L+ + K+ + +
Sbjct: 12 LVENRHPEAKQL-LDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRR-RGLKVAVIA 69
Query: 137 LDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR-----ATQSARD-------GGY 184
+D P + LG++ ++ L P + R +Q+ R+ GY
Sbjct: 70 VDPSSPFTGGSI--LGDRTRMQRLATDPGAFIRSMPTRGHLGGLSQATRELILLLDAAGY 127
Query: 185 DAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTG 244
D +I++T G SE+ ++V TG D + +I D+
Sbjct: 128 DVIIVETVGVGQ---------SEVDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADI-- 176
Query: 245 IILTRMDGDGRGGAALSMRT 264
++ + DG+G ++
Sbjct: 177 YVVNKADGEGATNVTIARLM 196
>gnl|CDD|179291 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 460
Score = 27.1 bits (61), Expect = 8.7
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 74 VIKIVHDELVEVLGKESIEL-----DLNAPSPLVIMLVGLQGS-GKTTTTAKIAYHLKT 126
V+ + VEV+G IEL +AP I + G+ GK+TTTA IA+ L+
Sbjct: 85 VVDLARAAGVEVIG--DIELFCRERRAHAPDAPFI---AITGTNGKSTTTALIAHILRE 138
>gnl|CDD|181727 PRK09249, PRK09249, coproporphyrinogen III oxidase; Provisional.
Length = 453
Score = 27.4 bits (62), Expect = 8.8
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 35/101 (34%)
Query: 22 LSETDISNTLREIRRTFL---EADVSLEV------------------------VQSFSKR 54
LS + + +R F +A++S+E+ VQ F
Sbjct: 116 LSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPE 175
Query: 55 VQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDL 95
VQ KA + R IQP + +V + E LG SI +DL
Sbjct: 176 VQ-KA----VNR-IQPFEFTFALV-EAARE-LGFTSINIDL 208
>gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD. This
model describes the bacterial and chloroplast form of
MinD, a multifunctional cell division protein that
guides correct placement of the septum. The homologous
archaeal MinD proteins, with many archaeal genomes
having two or more forms, are described by a separate
model.
Length = 261
Score = 27.3 bits (61), Expect = 9.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 107 GLQGSGKTTTTAKIAYHLKTLKKKKIL 133
G G GKTTTTA + L L KK +L
Sbjct: 9 GKGGVGKTTTTANLGTALARLGKKVVL 35
>gnl|CDD|131024 TIGR01969, minD_arch, cell division ATPase MinD, archaeal. This
model represents the archaeal branch of the MinD family.
MinD, a weak ATPase, works in bacteria with MinC as a
generalized cell division inhibitor and, through
interaction with MinE, prevents septum placement
inappropriate sites. Often several members of this
family are found in archaeal genomes, and the function
is uncharacterized. More distantly related proteins
include flagellar biosynthesis proteins and ParA
chromosome partitioning proteins. The exact roles of the
various archaeal MinD homologs are unknown.
Length = 251
Score = 27.0 bits (60), Expect = 9.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKK------KILMASL 137
+ + G G+GKTT TA + L L KK I MA+L
Sbjct: 3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANL 44
>gnl|CDD|180114 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 27.0 bits (61), Expect = 9.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD 138
P++I + G GSGKTT + I + L + I + D
Sbjct: 5 KPIIIGIAGGSGSGKTTVASTIY---EELGDESIAVIPQD 41
>gnl|CDD|179010 PRK00411, cdc6, cell division control protein 6; Reviewed.
Length = 394
Score = 27.1 bits (61), Expect = 10.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 99 SPLVIMLVGLQGSGKTTTTAKI 120
PL +++ G G+GKTTT K+
Sbjct: 54 RPLNVLIYGPPGTGKTTTVKKV 75
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.134 0.361
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,470,920
Number of extensions: 499799
Number of successful extensions: 1564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1527
Number of HSP's successfully gapped: 104
Length of query: 461
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,898,497
Effective search space: 1419052908
Effective search space used: 1419052908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)