BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780711|ref|YP_003065124.1| signal recognition particle
protein [Candidatus Liberibacter asiaticus str. psy62]
(461 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 461
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/461 (100%), Positives = 461/461 (100%)
Query: 1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAK 60
MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAK
Sbjct: 1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAK 60
Query: 61 GEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKI 120
GEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKI
Sbjct: 61 GEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKI 120
Query: 121 AYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180
AYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR
Sbjct: 121 AYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180
Query: 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240
DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV
Sbjct: 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240
Query: 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV 300
DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV
Sbjct: 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV 300
Query: 301 VSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLK 360
VSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLK
Sbjct: 301 VSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLK 360
Query: 361 QNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTNAAKINKLLKLH 420
QNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTNAAKINKLLKLH
Sbjct: 361 QNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTNAAKINKLLKLH 420
Query: 421 RQVAEMMHSTQGLGGNALTQQIMGRLKSKIGFGKNGRFPDF 461
RQVAEMMHSTQGLGGNALTQQIMGRLKSKIGFGKNGRFPDF
Sbjct: 421 RQVAEMMHSTQGLGGNALTQQIMGRLKSKIGFGKNGRFPDF 461
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 108 bits (271), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 132/278 (47%), Gaps = 21/278 (7%)
Query: 33 EIRRTFLEADVSLEVVQS-----FSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLG 87
E+ + +D+ + V Q +KR + +++L + +++H L+ +
Sbjct: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL-- 99
Query: 88 KESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ 147
+ D + P VI++VG+ G GKTT K++ + K+++A+ D R AA +Q
Sbjct: 100 SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQ 157
Query: 148 LRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISE 207
L+ ++ D + +A A + A+ D +I+DTAGR H N LM I +
Sbjct: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
Query: 208 IKSLTN------PHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALS 261
+ + PH +L V DA TGQ+A+ F + TG+I+T+MDG RGG +
Sbjct: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
Query: 262 MRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGD 299
+ P+ +G GE INDLE F + I G D
Sbjct: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
psy62]
Length = 805
Score = 28.1 bits (61), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMA 135
V +L+G+ GSGKT T AK+ ++ +++ I+MA
Sbjct: 170 VQLLLGVTGSGKTFTMAKV---IEAMQRPAIVMA 200
>gi|254780383|ref|YP_003064796.1| endonuclease III [Candidatus Liberibacter asiaticus str. psy62]
Length = 227
Score = 26.6 bits (57), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 232 LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIA 291
L FD + T LTR+ G GR GA + + G P IG I RI+
Sbjct: 115 LINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIP--TIGVDTHI--------FRIS 164
Query: 292 NRI-LGMGDVVSLVEKA 307
NRI L G + VE++
Sbjct: 165 NRIGLAPGKTPNKVEQS 181
>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
Length = 463
Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 88 KESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASL 137
KE+I+L LN LV L G + AK A+H T K++ + + L
Sbjct: 395 KENIQLSLNRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGL 444
>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 509
Score = 24.6 bits (52), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 102 VIMLVGLQGSGKTTTTAKI 120
V + GL G+GKTT +A +
Sbjct: 220 VALFFGLSGTGKTTLSASV 238
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 92 ELDLNAPSPLVIMLVGLQGSGKTT 115
+++L P + L+GL G+GK+T
Sbjct: 30 DVNLFIPENTITALIGLNGAGKST 53
>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 472
Score = 23.5 bits (49), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 64 ILRSIQPGQMVIKIVHDELVEVLGKESIELD-----LNAPSPLVI--------MLVGLQG 110
IL ++Q G ++ +V+ ++V +G SI + L A + L + ++ + G
Sbjct: 57 ILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
Query: 111 S-GKTTTTAKIAYHLKTLKKKKILMASLDVH 140
S GKTTT + L ++KK + S + H
Sbjct: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.134 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274,030
Number of Sequences: 1233
Number of extensions: 11276
Number of successful extensions: 64
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 17
length of query: 461
length of database: 328,796
effective HSP length: 77
effective length of query: 384
effective length of database: 233,855
effective search space: 89800320
effective search space used: 89800320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)