BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter asiaticus str. psy62] (461 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/461 (100%), Positives = 461/461 (100%) Query: 1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAK 60 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAK Sbjct: 1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAK 60 Query: 61 GEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKI 120 GEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKI Sbjct: 61 GEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKI 120 Query: 121 AYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 AYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR Sbjct: 121 AYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 Query: 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV Sbjct: 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240 Query: 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV 300 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV Sbjct: 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV 300 Query: 301 VSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLK 360 VSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLK Sbjct: 301 VSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLK 360 Query: 361 QNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTNAAKINKLLKLH 420 QNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTNAAKINKLLKLH Sbjct: 361 QNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTNAAKINKLLKLH 420 Query: 421 RQVAEMMHSTQGLGGNALTQQIMGRLKSKIGFGKNGRFPDF 461 RQVAEMMHSTQGLGGNALTQQIMGRLKSKIGFGKNGRFPDF Sbjct: 421 RQVAEMMHSTQGLGGNALTQQIMGRLKSKIGFGKNGRFPDF 461 >gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 108 bits (271), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 132/278 (47%), Gaps = 21/278 (7%) Query: 33 EIRRTFLEADVSLEVVQS-----FSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLG 87 E+ + +D+ + V Q +KR + +++L + +++H L+ + Sbjct: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL-- 99 Query: 88 KESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ 147 + D + P VI++VG+ G GKTT K++ + K+++A+ D R AA +Q Sbjct: 100 SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQ 157 Query: 148 LRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISE 207 L+ ++ D + +A A + A+ D +I+DTAGR H N LM I + Sbjct: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 Query: 208 IKSLTN------PHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALS 261 + + PH +L V DA TGQ+A+ F + TG+I+T+MDG RGG + Sbjct: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 Query: 262 MRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGD 299 + P+ +G GE INDLE F + I G D Sbjct: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 28.1 bits (61), Expect = 0.29, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Query: 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMA 135 V +L+G+ GSGKT T AK+ ++ +++ I+MA Sbjct: 170 VQLLLGVTGSGKTFTMAKV---IEAMQRPAIVMA 200 >gi|254780383|ref|YP_003064796.1| endonuclease III [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 26.6 bits (57), Expect = 0.90, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 11/77 (14%) Query: 232 LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIA 291 L FD + T LTR+ G GR GA + + G P IG I RI+ Sbjct: 115 LINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIP--TIGVDTHI--------FRIS 164 Query: 292 NRI-LGMGDVVSLVEKA 307 NRI L G + VE++ Sbjct: 165 NRIGLAPGKTPNKVEQS 181 >gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 463 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 25/50 (50%) Query: 88 KESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASL 137 KE+I+L LN LV L G + AK A+H T K++ + + L Sbjct: 395 KENIQLSLNRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGL 444 >gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 24.6 bits (52), Expect = 3.7, Method: Compositional matrix adjust. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 102 VIMLVGLQGSGKTTTTAKI 120 V + GL G+GKTT +A + Sbjct: 220 VALFFGLSGTGKTTLSASV 238 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 92 ELDLNAPSPLVIMLVGLQGSGKTT 115 +++L P + L+GL G+GK+T Sbjct: 30 DVNLFIPENTITALIGLNGAGKST 53 >gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 Score = 23.5 bits (49), Expect = 8.4, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 15/91 (16%) Query: 64 ILRSIQPGQMVIKIVHDELVEVLGKESIELD-----LNAPSPLVI--------MLVGLQG 110 IL ++Q G ++ +V+ ++V +G SI + L A + L + ++ + G Sbjct: 57 ILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 Query: 111 S-GKTTTTAKIAYHLKTLKKKKILMASLDVH 140 S GKTTT + L ++KK + S + H Sbjct: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.134 0.361 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 274,030 Number of Sequences: 1233 Number of extensions: 11276 Number of successful extensions: 64 Number of sequences better than 100.0: 17 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 17 length of query: 461 length of database: 328,796 effective HSP length: 77 effective length of query: 384 effective length of database: 233,855 effective search space: 89800320 effective search space used: 89800320 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)