254780712

 Score =  198 bits (504), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/109 (84%), Positives = 102/109 (93%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           MTLKIRLACGGSK RHHYRIVVANSRSPRDG+FIEK+GTWNPTLPKE+P+RFTM+FERIQ
Sbjct: 1   MTLKIRLACGGSKKRHHYRIVVANSRSPRDGRFIEKIGTWNPTLPKESPMRFTMDFERIQ 60

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKN 109
           HW+SKGAQPTDRILFF+DKAGLIKR  +NNPKK+ PK KAL+RL SK N
Sbjct: 61  HWISKGAQPTDRILFFMDKAGLIKRPSRNNPKKAMPKDKALKRLESKNN 109

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 83/108 (76%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M  KIRLA GGSK R  YRIV A++RSPRDG+FIEKLGT+NP L K++P R TM+ ERIQ
Sbjct: 1   MATKIRLARGGSKKRPFYRIVAADTRSPRDGRFIEKLGTYNPLLAKDSPERVTMDAERIQ 60

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKK 108
           HW+  GA PTDR+  FLD AG+ KR  +NNP K++P KKA ER+A KK
Sbjct: 61  HWLDHGALPTDRVARFLDAAGIKKRDARNNPNKAKPGKKAEERVAEKK 108

Species: Ahrensia sp. R2A130
Genus: Ahrensia
Family: Rhodobacteraceae
Order: Rhodobacterales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 85/103 (82%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M LKIRLA GGSK R +Y+IVVA++RSPRDG+F+EKLG+WNP L K++  R  +N ER+Q
Sbjct: 1   MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQ 60

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALER 103
           HW+++GAQPTDR++ FLD+AGL KR  +NNP K+QP KKA ER
Sbjct: 61  HWIAQGAQPTDRVMRFLDQAGLAKRPARNNPTKAQPGKKAQER 103

Species: Sinorhizobium meliloti
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/109 (58%), Positives = 91/109 (83%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M+LKIRLA GGSK R +Y+IV+A++RSPRDG+F+EK+G+WNP L K+N  R  +N +RI+
Sbjct: 1   MSLKIRLARGGSKKRPYYQIVIADARSPRDGRFLEKVGSWNPMLGKDNEKRVELNADRIK 60

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKN 109
            W++KGAQPTDR+L FL +AGL +R+ ++NP+K++P K+A+ERLA KK 
Sbjct: 61  EWIAKGAQPTDRVLKFLAEAGLAERAARSNPEKAKPGKRAVERLAEKKQ 109

Species: Agrobacterium vitis
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 89/109 (81%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M LKIRLA GGSK R +Y+IVVA++RSPRDG+F+EK+G+WNP L K+NPLR  +  + I+
Sbjct: 1   MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKVGSWNPMLAKDNPLRVELKADLIK 60

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKN 109
            W++KGAQPTDR+L FL +AGL +R+ ++NP+K+ P K+ALER+A KK 
Sbjct: 61  EWIAKGAQPTDRVLRFLAEAGLAERAARSNPEKALPGKRALERVAEKKQ 109

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 85/109 (77%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M++KIRLA GGSK R  Y IV A+SR PRDG+FIEKLGT+NP LPK++  R  MN ER+Q
Sbjct: 1   MSMKIRLARGGSKKRPSYAIVAADSRMPRDGRFIEKLGTYNPQLPKDSEERVKMNVERVQ 60

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKN 109
           +WMSKGAQP+DR+  FL+ AGL+++  +NNPKK+ P KKA ER+  K +
Sbjct: 61  YWMSKGAQPSDRVSRFLEAAGLVEKKTRNNPKKAIPGKKAQERVQEKAD 109

Species: Rhodobacteraceae bacterium HTCC2150
Genus: 
Family: Rhodobacteraceae
Order: Rhodobacterales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 87/115 (75%), Gaps = 1/115 (0%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M LKIRL+ GGSK R +Y IVVA+ RSPRDG+F+E++G W+P LPK+   R  +N ERIQ
Sbjct: 1   MALKIRLSRGGSKKRPYYHIVVADVRSPRDGRFLERVGAWDPMLPKDGK-RVKLNEERIQ 59

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKNADEHAT 115
           +W+ +GAQPTDR+L FLD AGL KR  +NNP K +P KKA ER+A+ K A E A+
Sbjct: 60  YWLGQGAQPTDRVLRFLDAAGLKKRPARNNPHKGEPGKKAQERIAAAKQATEEAS 114

Species: Bartonella sp. AR 15-3
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 85/109 (77%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M LKIRLA GGSK R +Y+IVVA++RSPRDG+F+EK+G+WNP L K++  R  +N ER+ 
Sbjct: 1   MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKIGSWNPMLSKDDEKRIELNAERVS 60

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKN 109
           HW+++GAQPTDR+L FLD+AGL KR  ++NP K+ P KKA ER A  K 
Sbjct: 61  HWIAQGAQPTDRVLRFLDQAGLAKRPARSNPTKAVPGKKAQERAAEAKQ 109

Species: Sinorhizobium fredii
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 83/103 (80%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M LKIRLA GGSK R +Y+IVVA++RSPRDG+F+EKLG+WNP L K++  R  +N ER+Q
Sbjct: 1   MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQ 60

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALER 103
           HW+ +GAQPTDR+L FLD+AGL KR  ++NP K+ P KKA ER
Sbjct: 61  HWIDQGAQPTDRVLRFLDQAGLAKRPARSNPVKALPGKKAQER 103

Species: Sinorhizobium medicae
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  140 bits (354), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/109 (58%), Positives = 87/109 (79%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M LKIRLA GGSK R +Y+IVVA++RSPRDG+F+EK+G+WNP L K+NP R  +  + I+
Sbjct: 1   MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKVGSWNPMLAKDNPQRIELKADLIK 60

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKN 109
            W++KGAQPTDR+L FL +AGL  R+ ++NP+K+ P K+ALER+A KK 
Sbjct: 61  EWIAKGAQPTDRVLRFLAEAGLADRAARSNPEKALPGKRALERVAEKKQ 109

Species: Agrobacterium sp. H13-3
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  115 bits (292), Expect = 2e-27
 Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 1/75 (1%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          +KIRLA GG+K R  YRIVVA+SRSPRDG+FIE++G +NP L K       ++ ER+ +W
Sbjct: 2  VKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERVGFYNP-LAKPAEEEVKLDEERVLYW 60

Query: 63 MSKGAQPTDRILFFL 77
          + +GAQPTD +   L
Sbjct: 61 LGQGAQPTDTVRRLL 75

Length = 75

 Score =  106 bits (268), Expect = 1e-24
 Identities = 44/81 (54%), Positives = 56/81 (69%), Gaps = 3/81 (3%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          +KIRL  GG K R  YRIVVA+SRS RDG++IE+LG +N   P     R  +N ERI++W
Sbjct: 1  VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYN---PLTKESRVKLNVERIKYW 57

Query: 63 MSKGAQPTDRILFFLDKAGLI 83
          +SKGAQPTD +   L KAG+ 
Sbjct: 58 LSKGAQPTDTVRNLLKKAGVF 78

This model describes ribosomal S16 of bacteria and organelles. Length = 78

 Score = 92.9 bits (232), Expect = 2e-20
 Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 4/61 (6%)

Query: 10 GGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQP 69
          GG K R  YRIVVA+SRSPRDG+FIE+LGT+NP    E      ++ ERI++W+ KGAQP
Sbjct: 2  GGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPIANGE----VKLDVERIKYWLGKGAQP 57

Query: 70 T 70
          T
Sbjct: 58 T 58

Length = 58

 Score = 90.0 bits (223), Expect = 1e-19
 Identities = 45/106 (42%), Positives = 65/106 (61%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M +KIRLA  G K+R  YRIVVA+SR  RDGK IE+LGT++P   ++N     +NF+RI+
Sbjct: 1   MVVKIRLARFGCKNRPFYRIVVADSRKRRDGKPIEQLGTYDPLPNQDNEKLVALNFDRIK 60

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLAS 106
           +W+  GAQP+D +   L KAGL    P       + ++   E++  
Sbjct: 61  YWLGVGAQPSDTVEELLGKAGLFPIHPMTFMNAKRNRRLTAEQVLP 106

Length = 112

 Score = 88.3 bits (219), Expect = 4e-19
 Identities = 38/71 (53%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 1  MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
          M +KIRL   G K +  Y IV A+SR+PRDGKFIEK+GT+NP     NP    +NF+R  
Sbjct: 1  MAVKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPN---TNPATVDLNFDRAV 57

Query: 61 HWMSKGAQPTD 71
          +W+  GAQPTD
Sbjct: 58 YWLMNGAQPTD 68

Length = 186

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 1  MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
          M +KI+L   G      YRIVVA+SR+ RDG+ IE++G ++   PKE P    ++ ER Q
Sbjct: 1  MAVKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYH---PKEEPSLIEIDSERAQ 57

Query: 61 HWMSKGAQPTDRILFFLDKAG 81
          +W+S GAQPT+ +L  L   G
Sbjct: 58 YWLSVGAQPTEPVLALLKITG 78

Length = 155

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          +K+RL   G K +  YRIV  + RS R+G+ +EK+G ++P   +       +N   I ++
Sbjct: 2  VKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQ-----TYLNVPAILYF 56

Query: 63 MSKGAQPTDRILFFLDKAGLIK 84
          + KGAQPT+ +   L KA + K
Sbjct: 57 LEKGAQPTETVYDILKKAEVFK 78

Length = 82

 Score = 67.7 bits (165), Expect = 6e-13
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 1  MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
          M + +RL+  G+     Y +V  +SR+ RDGK++E +G ++PT   + P R  +  ERI+
Sbjct: 1  MAVVLRLSRAGTHKAPFYHVVATDSRNARDGKYLEDVGIYDPT---KRPERIELKVERIE 57

Query: 61 HWMSKGAQPTDRILFFLDKAGLIKRSP 87
          HW+  GA+P+  +   L +A       
Sbjct: 58 HWLKAGAKPSQTVAMILKRAAKAAAPA 84

Length = 88

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          ++IRL   G + +  YRIVV +SR  RDG +IE LG +NP    + P    ++ ER   W
Sbjct: 2  VRIRLTRMGKRKQPFYRIVVVDSRKRRDGAYIESLGYYNPL---KEPYEIKVDVERAVEW 58

Query: 63 MSKGAQPTDRILFFLDKAGLIKR 85
          + KGAQP+D +   L K G++K+
Sbjct: 59 ILKGAQPSDTVRDILRKFGVMKK 81

Length = 94

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 1  MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
          M LKIRL   G ++   YR+V+A+  SPRDGK+IE LG ++P     +   + +  ERI 
Sbjct: 1  MALKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDP----HSEQNYQLKSERIF 56

Query: 61 HWMSKGAQPTDR 72
          +W+++GA+ T++
Sbjct: 57 YWLNQGAELTEK 68

Length = 116

 Score =  106 bits (265), Expect = 2e-24
 Identities = 51/83 (61%), Positives = 64/83 (77%), Gaps = 2/83 (2%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          +KIRLA GGSK R  YRIVVA+SRSPRDG+FIE+LGT+NP L KE   R  ++ ERI +W
Sbjct: 2  VKIRLARGGSKKRPFYRIVVADSRSPRDGRFIERLGTYNPLLGKEE--RVKLDEERILYW 59

Query: 63 MSKGAQPTDRILFFLDKAGLIKR 85
          +S+GAQP+D +   L KAGL K+
Sbjct: 60 LSQGAQPSDTVRRLLKKAGLAKK 82

Length = 87

 Score = 67.6 bits (164), Expect = 6e-13
 Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 5/106 (4%)

Query: 5   IRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMS 64
           IRLA GGSK    Y IVVA+ R PRDG+FIE++G +NP + +   +R  +  ERI HW++
Sbjct: 4   IRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNP-MARGQDIRLQLEKERISHWLN 62

Query: 65  KGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKNA 110
           +GAQ + R+   + K   +++SP+   +K   +K   +RL +++ A
Sbjct: 63  QGAQTSLRVKHLIKK---LEKSPE-EAQKGGMRKGEFKRLQAEQAA 104

Length = 137

Probab=100.00  E-value=5.9e-39  Score=258.86  Aligned_cols=104  Identities=43%  Similarity=0.674  Sum_probs=97.3

Q ss_pred             CCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf             93014123066878882799992067877684102221215678788864479739999999841983568999999972
Q gi|254780712|r    1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKA   80 (116)
Q Consensus         1 M~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~   80 (116)
T Consensus         1 ~~vkIRLar~GcknRPfY~Ivva~~r~~rdgk~iE~lG~ydPlp~~~~~~~v~Ln~dRikyWl~~GAqpS~tv~~Ll~~a   80 (112)
T KOG3419           1 MVVKIRLARFGCKNRPFYRIVVADSRKRRDGKPIEQLGTYDPLPNQDNEKLVALNFDRIKYWLGVGAQPSDTVEELLGKA   80 (112)
T ss_pred             CEEEEEEHHCCCCCCCEEEEEEEECCCCCCCCCHHHEECCCCCCCCCCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf             91788623118667872699983044566688653223345788878873146318999999854884686899998754


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             986668000511225428898899
Q gi|254780712|r   81 GLIKRSPQNNPKKSQPKKKALERL  104 (116)
Q Consensus        81 Gl~~~~~~~~~~~~~~~kk~~e~~  104 (116)
T Consensus        81 Gl~p~~p~~~~~a~~~rr~~a~~~  104 (112)
T KOG3419          81 GLFPIHPMTFMNAKRNRRLTAEQV  104 (112)
T ss_pred             CCCCCCHHHHHCCCCCHHHHHHHC
T ss_conf             788886366512312235565530

Probab=100.00  E-value=6.5e-36  Score=240.34  Aligned_cols=80  Identities=35%  Similarity=0.530  Sum_probs=75.5

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG   81 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G   81 (116)
T Consensus         1 MVkIRL~R~G~kk~P~YrIVv~dsr~~RdGk~iE~lG~YnP~~-----~~~~l~~eri~~Wl~~GAqpT~tV~~Llk~~g   75 (82)
T CHL00005          1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVYDILKKAE   75 (82)
T ss_pred             CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCC-----CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             9178301289888982689987357778998536777757999-----86533899999999976988899999999837


Q ss_pred             CCCCC
Q ss_conf             86668
Q gi|254780712|r   82 LIKRS   86 (116)
Q Consensus        82 l~~~~   86 (116)
T Consensus        76 i~~~~   80 (82)
T CHL00005         76 VFKEL   80 (82)
T ss_pred             CHHHH
T ss_conf             37765

Probab=100.00  E-value=8.1e-36  Score=239.73  Aligned_cols=78  Identities=60%  Similarity=0.961  Sum_probs=75.6

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG   81 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G   81 (116)
T Consensus         1 ~vkIRL~R~G~kk~P~YrIVVaDsrs~RDGr~IE~lG~ynP~~--~~~~~v~l~~eri~~Wl~~GAqpSdtV~~ll~~~g   78 (87)
T COG0228           1 MVKIRLARGGSKKRPFYRIVVADSRSPRDGRFIERLGTYNPLL--GKEERVKLDEERILYWLSQGAQPSDTVRRLLKKAG   78 (87)
T ss_pred             CEEEEHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCC--CCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             9078530178766984799984168888986445400237887--87634788699999999859974489999999852

Probab=100.00  E-value=3.7e-35  Score=235.71  Aligned_cols=75  Identities=53%  Similarity=0.925  Sum_probs=71.8

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             301412306687888279999206787768410222121567878886447973999999984198356899999997
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDK   79 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~   79 (116)
T Consensus         1 mvkIRL~R~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~ydP~~---~~~~~~l~~eri~~Wl~~GAqpS~~V~~Llkk   75 (75)
T PRK00040          1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERVGFYNPLA---KPAEVKLDEERVLYWLGQGAQPTDTVARLLKK   75 (75)
T ss_pred             CEEEEHHCCCCCCCCEEEEEEEECCCCCCCCCHHEEEEECCCC---CCCEEEECHHHHHHHHHCCCCCCHHHHHHHCC
T ss_conf             9388120089989985899996266678886100004777989---98669984999999998789868999998639

Probab=99.97  E-value=1.5e-32  Score=219.80  Aligned_cols=81  Identities=56%  Similarity=0.948  Sum_probs=78.3

Q ss_pred             CHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf             01412306687888279999206787768410222121567878886447973999999984198356899999997298
Q gi|254780712|r    3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAGL   82 (116)
Q Consensus         3 vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~Gl   82 (116)
T Consensus         1 vkiRL~r~G~k~~p~Yrivv~d~~~~RdG~~ie~lG~y~P~~~~~~~~~~~l~~~~~~~wl~~Ga~pt~tv~~ll~~~g~   80 (81)
T TIGR00002         1 VKIRLKRGGRKKRPFYRIVVADSRSPRDGRYIEELGFYNPLLKEDDEERVKLDVERIKYWLSKGAQPTDTVRNLLKKAGV   80 (81)
T ss_pred             CEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf             91110237765686157886247897454123331544788889875246636799999986699857788999886147


Q ss_pred             C
Q ss_conf             6
Q gi|254780712|r   83 I   83 (116)
Q Consensus        83 ~   83 (116)
T Consensus        81 ~   81 (81)
T TIGR00002        81 F   81 (81)
T ss_pred             C
T ss_conf             9

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities , groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.

Probab=99.93  E-value=2.6e-26  Score=181.86  Aligned_cols=58  Identities=60%  Similarity=1.021  Sum_probs=55.3

Q ss_pred             HCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCC
Q ss_conf             06687888279999206787768410222121567878886447973999999984198356
Q gi|254780712|r    9 CGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPT   70 (116)
Q Consensus         9 r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS   70 (116)
T Consensus         1 R~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~YdP~~~----~~~~l~~eri~~Wl~~GAqPs   58 (58)
T pfam00886         1 RGGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPIAN----GEVKLDVERIKYWLGKGAQPT   58 (58)
T ss_pred             CCCCCCCCEEEEEEEECCCCCCCCCHHEEEEECCCCC----CEEEEEHHHHHHHHHCCCCCC
T ss_conf             9887789868999974777889976103545659998----558982899999998749993

 Score =  119 bits (300), Expect = 1e-28
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M ++IRLA  G K    YRIVV +++SPR+GK+I+ LGT++P           +  E+++
Sbjct: 1   MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKV----LINVYPEKVK 56

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKR-SPQNNPKKSQPKKKALERLASKKNADEHA 114
            W+ KG + + R    L   G++K   P+    K        E+  SKK+    A
Sbjct: 57  EWVLKGVELSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111

 Score =  106 bits (266), Expect = 2e-24
 Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          +KIRLA  GSK   HYRIVV ++R  RDGK+IEK+G ++P     + L+  ++ ER ++W
Sbjct: 2  VKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLK--VDVERARYW 59

Query: 63 MSKGAQPTDRILFFLDKAGLIKR 85
          +S GAQPTD     L +AG+ ++
Sbjct: 60 LSVGAQPTDTARRLLRQAGVFRQ 82

 Score = 98.3 bits (245), Expect = 4e-22
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          +K+RL   G K R  YRIV  + RS R+G+ ++K+G ++P   +       +N   I  +
Sbjct: 2  VKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQT-----YLNVPAILDF 56

Query: 63 MSKGAQPTDRILFFLDKAGLIKRSPQNNPKKS 94
          + KGAQPT+ +   L +A + K    N  K +
Sbjct: 57 LEKGAQPTETVYDILKRAEVFKEFRLNQTKFN 88

 Score =  111 bits (279), Expect = 4e-26
 Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          + IRLA  G+K R  Y++VVA+SR+ R+G+FIE++G +NP +  E      ++ +RI HW
Sbjct: 2  VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNP-IASEKEEGTRLDLDRIAHW 60

Query: 63 MSKGAQPTDRILFFLDKA 80
          + +GA  +DR+   + + 
Sbjct: 61 VGQGATISDRVAALIKEV 78

 Score =  100 bits (251), Expect = 7e-23
 Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          + IRLA  G+K R  Y++VVA+SR+ R+G+FIE++G +NP +  E      ++ +RI HW
Sbjct: 2  VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNP-IASEKEEGTRLDLDRIAHW 60

Query: 63 MSKGAQPTDRILFFLDKA 80
          + +GA  +DR+   + + 
Sbjct: 61 VGQGATISDRVAALIKEV 78

Probab=100.00  E-value=1e-40  Score=268.28  Aligned_cols=108  Identities=33%  Similarity=0.557  Sum_probs=88.0

Q ss_pred             CCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf             93014123066878882799992067877684102221215678788864479739999999841983568999999972
Q gi|254780712|r    1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKA   80 (116)
Q Consensus         1 M~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~   80 (116)
                      |+|+|||+|+||||+|||||||+|||+||||+|||+||||||+    ++++|.||.|||+|||++||||||+|.+||+.+
T Consensus         1 MavkIRL~r~G~k~~p~yriVv~d~r~~rdgk~iE~lG~YnP~----~~~~i~l~~eri~~Wl~~GAqps~~V~~lL~~~   76 (112)
T 3bn0_A            1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPK----RKVLINVYPEKVKEWVLKGVELSHRAKAILWNH   76 (112)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETT----TTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHT
T ss_pred             CCEEEEHHCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCC----CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf             9788703108888898578998436878899650232377587----642124689999999987897479999999985


Q ss_pred             CCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             986668-00051122542889889999874303
Q gi|254780712|r   81 GLIKRS-PQNNPKKSQPKKKALERLASKKNADE  112 (116)
Q Consensus        81 Gl~~~~-~~~~~~~~~~~kk~~e~~~~kk~~~e  112 (116)
                      |+++.. +.....+.....+..++.++++.+.+
T Consensus        77 Gll~~~~~~~~~~k~~~~~~~~ek~~~~~~~~~  109 (112)
T 3bn0_A           77 GILKEVVPEGYEMKRVGDYYVFEKRESKKSKGG  109 (112)
T ss_dssp             THHHHHCCTTEEEEEETTEEEEEECC-------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             986444544333243442100467999875341

Probab=100.00  E-value=3.2e-36  Score=240.90  Aligned_cols=85  Identities=34%  Similarity=0.554  Sum_probs=78.1

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG   81 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G   81 (116)
                      ||+|||+|+||||+|||||||+|||++|||+|||+||||||+++     .+.||.||++|||++||||||+|++||+++|
T Consensus         1 MvkIRL~R~G~k~~P~YrIVvadsr~~RdGk~iE~lG~ynP~~~-----~~~l~~eri~~Wl~~GAqpS~~V~~LL~~~g   75 (88)
T 3bbn_P            1 MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKS-----QTYLNVPAILDFLEKGAQPTETVYDILKRAE   75 (88)
T ss_dssp             CEEECCCCCSCTTCCCCCCCCEETTSCSSSCCSSCCCCBCTTSS-----CBCCCTTTSSSSTTSSCEECTTTSSSSTTTT
T ss_pred             CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCC-----CCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             92883134899899858999855688899970667500669998-----5414789999999969955899999999808


Q ss_pred             CCCCCCCCCC
Q ss_conf             8666800051
Q gi|254780712|r   82 LIKRSPQNNP   91 (116)
Q Consensus        82 l~~~~~~~~~   91 (116)
                      +++....+..
T Consensus        76 ~~~~~~~n~~   85 (88)
T 3bbn_P           76 VFKEFRLNQT   85 (88)
T ss_dssp             SSSCC-----
T ss_pred             CHHHHHCCCC
T ss_conf             3366624665

Probab=100.00  E-value=1.2e-36  Score=243.45  Aligned_cols=82  Identities=46%  Similarity=0.774  Sum_probs=78.4

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG   81 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G   81 (116)
                      ||+|||+|+||||+|||||||+|+|++|||+|||+||||||+.  .+++.+.||.||++|||++|||||++|.+||+++|
T Consensus         1 MvkIRL~R~G~k~~P~YrIVv~d~r~~rdgk~iE~lG~YnP~~--~~~~~i~i~~eRi~~WL~~GAqpS~~V~~Ll~~~g   78 (83)
T 3mr8_P            1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRK--TTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAG   78 (83)
T ss_dssp             CEEEEECCCSSTTCCCCCEEEEETTSCTTSCCSEECEEECTTC--CSTTSEEECHHHHHHHHHTCCCCCHHHHHHHHHHT
T ss_pred             CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCC--CCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             9288212489989986899997668788996467888889998--88501564699999999878906789999999838


Q ss_pred             CCCC
Q ss_conf             8666
Q gi|254780712|r   82 LIKR   85 (116)
Q Consensus        82 l~~~   85 (116)
                      +++.
T Consensus        79 i~~~   82 (83)
T 3mr8_P           79 VFRQ   82 (83)
T ss_dssp             SSCC
T ss_pred             CCCC
T ss_conf             8567

Probab=100.00  E-value=1.7e-35  Score=236.49  Aligned_cols=79  Identities=38%  Similarity=0.743  Sum_probs=74.6

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG   81 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G   81 (116)
                      ||+|||+|+||||+|||||||+|+|++|||+|||+||||||+++ .+++.+.||.|||+|||++|||||++|++||+++.
T Consensus         1 MVkIRL~R~G~k~rP~YrIVv~d~r~~RdGk~iE~lG~YnP~~~-~~~~~i~l~~eri~~Wl~~GAqps~~V~~llk~~~   79 (82)
T 3ofo_P            1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS-EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVN   79 (82)
T ss_dssp             CEEEEECCCCCTTSCCBCEEEEETTSCTTSCCSEECBCBCSCCC-SSSCCCCBCHHHHHHHHHHTCEECHHHHHHHTTSC
T ss_pred             CEEECCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCC-CCCCCEEECHHHHHHHHHCCCEECHHHHHHHHHHH
T ss_conf             93792336999999858999965788999983378615769268-98654564499999999880970899999999876

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]

 Score =  107 bits (268), Expect = 4e-25
 Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 2/83 (2%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          +KIRLA  GSK   HYRIVV ++R  RDGK+IEK+G ++P     + L+   + ER ++W
Sbjct: 2  VKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKV--DVERARYW 59

Query: 63 MSKGAQPTDRILFFLDKAGLIKR 85
          +S GAQPTD     L +AG+ ++
Sbjct: 60 LSVGAQPTDTARRLLRQAGVFRQ 82

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]

 Score =  106 bits (265), Expect = 6e-25
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 3   LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
           ++IRLA  G K    YRIVV +++SPR+GK+I+ LGT++P    +  +   +  E+++ W
Sbjct: 2   VRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDP----KRKVLINVYPEKVKEW 57

Query: 63  MSKGAQPTDRILFFLDKAGLIKR-SPQNNPKKSQPKKKALER 103
           + KG + + R    L   G++K   P+    K        E+
Sbjct: 58  VLKGVELSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEK 99

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]

 Score = 99.8 bits (249), Expect = 6e-23
 Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          + IRLA  G+K R  Y++VVA+SR+ R+G+FIE++G +NP +  E      ++ +RI HW
Sbjct: 2  VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNP-IASEKEEGTRLDLDRIAHW 60

Query: 63 MSKGAQPTDRILFFLDK 79
          + +GA  +DR+   + +
Sbjct: 61 VGQGATISDRVAALIKE 77

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.9e-37  Score=245.76  Aligned_cols=83  Identities=46%  Similarity=0.765  Sum_probs=79.0

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG   81 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G   81 (116)
                      ||+|||+|+||||+|||||||+|+|+||||+|||+||||||+.  .+++.+.||.||++|||++|||||++|..||+++|
T Consensus         1 MvkIRL~R~G~k~~P~yrIVv~d~r~~rdGk~IE~lG~YnP~~--~~~~~i~l~~eRi~~Wl~~GAqpS~tV~~ll~~~g   78 (83)
T d2uubp1           1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRK--TTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAG   78 (83)
T ss_dssp             CEEEEEEECSBTTBCCEEEEEEETTSCTTSCCSEEEEEECTTC--CSSCCEEECHHHHHHHHHHTCEECHHHHHHHHHTT
T ss_pred             CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCC--CCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             9388121589989985899997668888995651365787998--98744887799999999977977899999999838


Q ss_pred             CCCCC
Q ss_conf             86668
Q gi|254780712|r   82 LIKRS   86 (116)
Q Consensus        82 l~~~~   86 (116)
                      +++.+
T Consensus        79 i~~~e   83 (83)
T d2uubp1          79 VFRQE   83 (83)
T ss_dssp             SSCCC
T ss_pred             CCCCC
T ss_conf             97689

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=5e-37  Score=244.34  Aligned_cols=81  Identities=36%  Similarity=0.654  Sum_probs=77.0

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG   81 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G   81 (116)
                      +|+|||+|+||||+|||||||+|||+||||+|||+||||||+    +++.|.||.|||.|||++||||||+|.+||+.+|
T Consensus         1 AvkIRL~r~G~k~~p~yrIVv~d~r~~rdGk~iE~lG~ynP~----~~~~i~l~~eri~~Wl~~GAqpS~tV~~lL~~~g   76 (101)
T d3bn0a1           1 AVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPK----RKVLINVYPEKVKEWVLKGVELSHRAKAILWNHG   76 (101)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETT----TTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHTT
T ss_pred             CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC----CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             928800018998998368998436888888445106578789----7311223589999999869983899999999859


Q ss_pred             CCCCC
Q ss_conf             86668
Q gi|254780712|r   82 LIKRS   86 (116)
Q Consensus        82 l~~~~   86 (116)
                      +++..
T Consensus        77 ~~~~~   81 (101)
T d3bn0a1          77 ILKEV   81 (101)
T ss_dssp             HHHHH
T ss_pred             CCCCC
T ss_conf             86444

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-35  Score=236.35  Aligned_cols=77  Identities=38%  Similarity=0.749  Sum_probs=73.7

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             301412306687888279999206787768410222121567878886447973999999984198356899999997
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDK   79 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~   79 (116)
                      ||+|||+|+||||+|||||||+|+|++|||+|||+||||||++++ +++.+.||.||++|||++|||||++|..||++
T Consensus         1 MvkIRL~r~G~k~~P~YrIVv~d~r~~rdgk~iE~lG~YnP~~~~-~~~~i~l~~eri~~Wl~~GAqps~~V~~LLkk   77 (78)
T d2gy9p1           1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASE-KEEGTRLDLDRIAHWVGQGATISDRVAALIKE   77 (78)
T ss_dssp             CEEEEEEECCBTTBCCEEEEEEETTSCTTSCCSEECCEECSSCCS-CSCCEECCHHHHHHHTTTTCEECHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCC-CCCCEEECHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             948831138998998479998666888888442012168786789-86446766999999999759678999999850

 Score =  112 bits (283), Expect = 1e-26
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           M ++IRLA  G K    YRIVV +++SPR+GK+I+ LGT++P           +  E+++
Sbjct: 1   MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKV----LINVYPEKVK 56

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKAL--ERLASKKNADEHA 114
            W+ KG + + R    L   G++K       +  +     +  +R + K    E A
Sbjct: 57  EWVLKGVELSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEAA 112

 Score =  104 bits (262), Expect = 3e-24
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          +K+RL   G K R  YRIV  + RS R+G+ ++K+G ++P        +  +N   I  +
Sbjct: 2  VKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDP-----IKSQTYLNVPAILDF 56

Query: 63 MSKGAQPTDRILFFLDKAGLIKRSPQNNPKKS 94
          + KGAQPT+ +   L +A + K    N  K +
Sbjct: 57 LEKGAQPTETVYDILKRAEVFKEFRLNQTKFN 88

 Score =  107 bits (268), Expect = 7e-25
 Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          + IRLA  G+K R  Y++VVA+SR+ R+G+FIE++G +NP +  E      ++ +RI HW
Sbjct: 2  VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNP-IASEKEEGTRLDLDRIAHW 60

Query: 63 MSKGAQPTDRILFFLDKAGL 82
          + +GA  +DR+   + +   
Sbjct: 61 VGQGATISDRVAALIKEVNK 80

Probab=100.00  E-value=2.3e-39  Score=261.01  Aligned_cols=95  Identities=34%  Similarity=0.582  Sum_probs=84.8

Q ss_pred             CCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf             93014123066878882799992067877684102221215678788864479739999999841983568999999972
Q gi|254780712|r    1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKA   80 (116)
Q Consensus         1 M~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~   80 (116)
                      |+|+|||+|+||||+|||||||+|+|++|||+|||+||||||+    +++.+.||+||++|||++|||||++|..||+++
T Consensus         1 MavkIRL~r~G~k~~pfYrIVv~d~r~~rdgk~iE~iG~YdP~----~~k~~~l~~~ri~~Wl~~GAqpt~~V~~ll~~~   76 (112)
T 3bn0_A            1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPK----RKVLINVYPEKVKEWVLKGVELSHRAKAILWNH   76 (112)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETT----TTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHT
T ss_pred             CCEEEEHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC----CCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf             9688712008988898578998645777889742035562799----975423689999999997498479999999976


Q ss_pred             CCCCC-CCCCCCHHHHHHHH
Q ss_conf             98666-80005112254288
Q gi|254780712|r   81 GLIKR-SPQNNPKKSQPKKK   99 (116)
Q Consensus        81 Gl~~~-~~~~~~~~~~~~kk   99 (116)
                      |+++. ++.....+....+.
T Consensus        77 gi~~~~~~~~~~~~~~~~~~   96 (112)
T 3bn0_A           77 GILKEVVPEGYEMKRVGDYY   96 (112)
T ss_dssp             THHHHHCCTTEEEEEETTEE
T ss_pred             CCCCCCCCCCCCCCCCCHHH
T ss_conf             97400044555634434132

Probab=100.00  E-value=2.7e-36  Score=242.22  Aligned_cols=81  Identities=37%  Similarity=0.712  Sum_probs=78.2

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG   81 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G   81 (116)
                      ||+|||+|+||||+|||||||+|+|+||||+|||+||||||+++ .+++.+.||.|||+|||++|||||++|.+||+++|
T Consensus         1 mvkIRL~r~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~Y~P~~~-~~~~~i~l~~eri~~Wl~~GAqpt~~V~~ll~~~g   79 (82)
T 3i1m_P            1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS-EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVN   79 (82)
T ss_dssp             CEEEEEEECSCTTSCCEEEEEEETTSCTTSCCSEECEEECSCCC-SSSCCEEECHHHHHHHHHTCCEECTTHHHHHTTSC
T ss_pred             CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCC-CCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             94882113899899858999966788889857112537888778-98434566799999999975977899999999986


Q ss_pred             CC
Q ss_conf             86
Q gi|254780712|r   82 LI   83 (116)
Q Consensus        82 l~   83 (116)
                      ++
T Consensus        80 i~   81 (82)
T 3i1m_P           80 KA   81 (82)
T ss_dssp             SC
T ss_pred             HC
T ss_conf             31

Probab=100.00  E-value=3.5e-36  Score=241.57  Aligned_cols=87  Identities=34%  Similarity=0.531  Sum_probs=81.5

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG   81 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G   81 (116)
                      ||+|||+|+||||+|||||||||+|+||||+|||+||||||++     +.+.||.||++|||++|||||++|..||+++|
T Consensus         1 mvkIRL~r~G~k~~PfYrIVvad~r~~RdGk~iE~lG~YdP~~-----~~i~l~~eri~~WL~~GAqpt~~V~~lL~~~g   75 (88)
T 3bbn_P            1 MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIK-----SQTYLNVPAILDFLEKGAQPTETVYDILKRAE   75 (88)
T ss_dssp             CEEECCCCCSCTTCCCCCCCCEETTSCSSSCCSSCCCCBCTTS-----SCBCCCTTTSSSSTTSSCEECTTTSSSSTTTT
T ss_pred             CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCHHHCCEECCCC-----CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             9389533589989986899997368778997511327677999-----85404889999999859982899999999828


Q ss_pred             CCCCCCCCCCHH
Q ss_conf             866680005112
Q gi|254780712|r   82 LIKRSPQNNPKK   93 (116)
Q Consensus        82 l~~~~~~~~~~~   93 (116)
                      +++.++....++
T Consensus        76 ~~~~~~~~~~~k   87 (88)
T 3bbn_P           76 VFKEFRLNQTKF   87 (88)
T ss_dssp             SSSCC-------
T ss_pred             CCHHHHCCCCCC
T ss_conf             504554266578