Conserved Domains in CDD Database Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity Alignment graph Length
Definition
E-value
Target 116
30S ribosomal protein S16 [Candidatus Liberibacter asia
PRK00040 75
PRK00040, rpsP, 30S ribosomal protein S16; Reviewed
2e-27
TIGR00002 78
TIGR00002, S16, ribosomal protein S16
1e-24
pfam00886 58
pfam00886, Ribosomal_S16, Ribosomal protein S16
2e-20
KOG3419 112
KOG3419, KOG3419, KOG3419, Mitochondrial/chloroplast ri
1e-19
PRK14521 186
PRK14521, rpsP, 30S ribosomal protein S16; Provisional
4e-19
PRK14520 155
PRK14520, rpsP, 30S ribosomal protein S16; Provisional
3e-17
CHL00005 82
CHL00005, rps16, ribosomal protein S16
4e-13
PRK14525 88
PRK14525, rpsP, 30S ribosomal protein S16; Provisional
6e-13
PRK14524 94
PRK14524, rpsP, 30S ribosomal protein S16; Provisional
2e-12
PRK14522 116
PRK14522, rpsP, 30S ribosomal protein S16; Provisional
2e-10
COG0228 87
COG0228, RpsP, Ribosomal protein S16 [Translation, ribo
2e-24
PRK14523 137
PRK14523, rpsP, 30S ribosomal protein S16; Provisional
6e-13
>gnl|CDD|178814 PRK00040, rpsP, 30S ribosomal protein S16; Reviewed
Back Show alignment and domain information
Score = 115 bits (292), Expect = 2e-27
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
+KIRLA GG+K R YRIVVA+SRSPRDG+FIE++G +NP L K ++ ER+ +W
Sbjct: 2 VKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERVGFYNP-LAKPAEEEVKLDEERVLYW 60
Query: 63 MSKGAQPTDRILFFL 77
+ +GAQPTD + L
Sbjct: 61 LGQGAQPTDTVRRLL 75
>gnl|CDD|129114 TIGR00002, S16, ribosomal protein S16
Back Show alignment and domain information
Score = 106 bits (268), Expect = 1e-24
Identities = 44/81 (54%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
+KIRL GG K R YRIVVA+SRS RDG++IE+LG +N P R +N ERI++W
Sbjct: 1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYN---PLTKESRVKLNVERIKYW 57
Query: 63 MSKGAQPTDRILFFLDKAGLI 83
+SKGAQPTD + L KAG+
Sbjct: 58 LSKGAQPTDTVRNLLKKAGVF 78
This model describes ribosomal S16 of bacteria and organelles. Length = 78
>gnl|CDD|144471 pfam00886, Ribosomal_S16, Ribosomal protein S16
Back Show alignment and domain information
Score = 92.9 bits (232), Expect = 2e-20
Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 4/61 (6%)
Query: 10 GGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQP 69
GG K R YRIVVA+SRSPRDG+FIE+LGT+NP E ++ ERI++W+ KGAQP
Sbjct: 2 GGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPIANGE----VKLDVERIKYWLGKGAQP 57
Query: 70 T 70
T
Sbjct: 58 T 58
>gnl|CDD|38629 KOG3419, KOG3419, KOG3419, Mitochondrial/chloroplast ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 90.0 bits (223), Expect = 1e-19
Identities = 45/106 (42%), Positives = 65/106 (61%)
Query: 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
M +KIRLA G K+R YRIVVA+SR RDGK IE+LGT++P ++N +NF+RI+
Sbjct: 1 MVVKIRLARFGCKNRPFYRIVVADSRKRRDGKPIEQLGTYDPLPNQDNEKLVALNFDRIK 60
Query: 61 HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLAS 106
+W+ GAQP+D + L KAGL P + ++ E++
Sbjct: 61 YWLGVGAQPSDTVEELLGKAGLFPIHPMTFMNAKRNRRLTAEQVLP 106
>gnl|CDD|184725 PRK14521, rpsP, 30S ribosomal protein S16; Provisional
Back Show alignment and domain information
Score = 88.3 bits (219), Expect = 4e-19
Identities = 38/71 (53%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
M +KIRL G K + Y IV A+SR+PRDGKFIEK+GT+NP NP +NF+R
Sbjct: 1 MAVKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPN---TNPATVDLNFDRAV 57
Query: 61 HWMSKGAQPTD 71
+W+ GAQPTD
Sbjct: 58 YWLMNGAQPTD 68
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional
Back Show alignment and domain information
Score = 81.7 bits (202), Expect = 3e-17
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
M +KI+L G YRIVVA+SR+ RDG+ IE++G ++ PKE P ++ ER Q
Sbjct: 1 MAVKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYH---PKEEPSLIEIDSERAQ 57
Query: 61 HWMSKGAQPTDRILFFLDKAG 81
+W+S GAQPT+ +L L G
Sbjct: 58 YWLSVGAQPTEPVLALLKITG 78
>gnl|CDD|176950 CHL00005, rps16, ribosomal protein S16
Back Show alignment and domain information
Score = 68.5 bits (168), Expect = 4e-13
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
+K+RL G K + YRIV + RS R+G+ +EK+G ++P + +N I ++
Sbjct: 2 VKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQ-----TYLNVPAILYF 56
Query: 63 MSKGAQPTDRILFFLDKAGLIK 84
+ KGAQPT+ + L KA + K
Sbjct: 57 LEKGAQPTETVYDILKKAEVFK 78
>gnl|CDD|172991 PRK14525, rpsP, 30S ribosomal protein S16; Provisional
Back Show alignment and domain information
Score = 67.7 bits (165), Expect = 6e-13
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
M + +RL+ G+ Y +V +SR+ RDGK++E +G ++PT + P R + ERI+
Sbjct: 1 MAVVLRLSRAGTHKAPFYHVVATDSRNARDGKYLEDVGIYDPT---KRPERIELKVERIE 57
Query: 61 HWMSKGAQPTDRILFFLDKAGLIKRSP 87
HW+ GA+P+ + L +A
Sbjct: 58 HWLKAGAKPSQTVAMILKRAAKAAAPA 84
>gnl|CDD|172990 PRK14524, rpsP, 30S ribosomal protein S16; Provisional
Back Show alignment and domain information
Score = 66.0 bits (161), Expect = 2e-12
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
++IRL G + + YRIVV +SR RDG +IE LG +NP + P ++ ER W
Sbjct: 2 VRIRLTRMGKRKQPFYRIVVVDSRKRRDGAYIESLGYYNPL---KEPYEIKVDVERAVEW 58
Query: 63 MSKGAQPTDRILFFLDKAGLIKR 85
+ KGAQP+D + L K G++K+
Sbjct: 59 ILKGAQPSDTVRDILRKFGVMKK 81
>gnl|CDD|172988 PRK14522, rpsP, 30S ribosomal protein S16; Provisional
Back Show alignment and domain information
Score = 59.2 bits (143), Expect = 2e-10
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
M LKIRL G ++ YR+V+A+ SPRDGK+IE LG ++P + + + ERI
Sbjct: 1 MALKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDP----HSEQNYQLKSERIF 56
Query: 61 HWMSKGAQPTDR 72
+W+++GA+ T++
Sbjct: 57 YWLNQGAELTEK 68
>gnl|CDD|30577 COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 106 bits (265), Expect = 2e-24
Identities = 51/83 (61%), Positives = 64/83 (77%), Gaps = 2/83 (2%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
+KIRLA GGSK R YRIVVA+SRSPRDG+FIE+LGT+NP L KE R ++ ERI +W
Sbjct: 2 VKIRLARGGSKKRPFYRIVVADSRSPRDGRFIERLGTYNPLLGKEE--RVKLDEERILYW 59
Query: 63 MSKGAQPTDRILFFLDKAGLIKR 85
+S+GAQP+D + L KAGL K+
Sbjct: 60 LSQGAQPSDTVRRLLKKAGLAKK 82
>gnl|CDD|172989 PRK14523, rpsP, 30S ribosomal protein S16; Provisional
Back Show alignment and domain information
Score = 67.6 bits (164), Expect = 6e-13
Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 5/106 (4%)
Query: 5 IRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMS 64
IRLA GGSK Y IVVA+ R PRDG+FIE++G +NP + + +R + ERI HW++
Sbjct: 4 IRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNP-MARGQDIRLQLEKERISHWLN 62
Query: 65 KGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKNA 110
+GAQ + R+ + K +++SP+ +K +K +RL +++ A
Sbjct: 63 QGAQTSLRVKHLIKK---LEKSPE-EAQKGGMRKGEFKRLQAEQAA 104
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability
Target
116
30S ribosomal protein S16 [Candidatus Liberibacter asia
KOG3419 112
consensus
100.0
CHL00005 82
rps16 ribosomal protein S16
100.0
COG0228 87
RpsP Ribosomal protein S16 [Translation, ribosomal stru
100.0
PRK00040 75
rpsP 30S ribosomal protein S16; Reviewed
100.0
TIGR00002 81
S16 ribosomal protein S16; InterPro: IPR000307 Ribosome
99.97
pfam00886 58
Ribosomal_S16 Ribosomal protein S16.
99.93
>KOG3419 consensus
Back Show alignment and domain information
Probab=100.00 E-value=5.9e-39 Score=258.86 Aligned_cols=104 Identities=43% Similarity=0.674 Sum_probs=97.3
Q ss_pred CCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 93014123066878882799992067877684102221215678788864479739999999841983568999999972
Q gi|254780712|r 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKA 80 (116)
Q Consensus 1 M~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~ 80 (116)
T Consensus 1 ~~vkIRLar~GcknRPfY~Ivva~~r~~rdgk~iE~lG~ydPlp~~~~~~~v~Ln~dRikyWl~~GAqpS~tv~~Ll~~a 80 (112)
T KOG3419 1 MVVKIRLARFGCKNRPFYRIVVADSRKRRDGKPIEQLGTYDPLPNQDNEKLVALNFDRIKYWLGVGAQPSDTVEELLGKA 80 (112)
T ss_pred CEEEEEEHHCCCCCCCEEEEEEEECCCCCCCCCHHHEECCCCCCCCCCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf 91788623118667872699983044566688653223345788878873146318999999854884686899998754
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 986668000511225428898899
Q gi|254780712|r 81 GLIKRSPQNNPKKSQPKKKALERL 104 (116)
Q Consensus 81 Gl~~~~~~~~~~~~~~~kk~~e~~ 104 (116)
T Consensus 81 Gl~p~~p~~~~~a~~~rr~~a~~~ 104 (112)
T KOG3419 81 GLFPIHPMTFMNAKRNRRLTAEQV 104 (112)
T ss_pred CCCCCCHHHHHCCCCCHHHHHHHC
T ss_conf 788886366512312235565530
>CHL00005 rps16 ribosomal protein S16
Back Show alignment and domain information
Probab=100.00 E-value=6.5e-36 Score=240.34 Aligned_cols=80 Identities=35% Similarity=0.530 Sum_probs=75.5
Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG 81 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G 81 (116)
T Consensus 1 MVkIRL~R~G~kk~P~YrIVv~dsr~~RdGk~iE~lG~YnP~~-----~~~~l~~eri~~Wl~~GAqpT~tV~~Llk~~g 75 (82)
T CHL00005 1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVYDILKKAE 75 (82)
T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCC-----CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 9178301289888982689987357778998536777757999-----86533899999999976988899999999837
Q ss_pred CCCCC
Q ss_conf 86668
Q gi|254780712|r 82 LIKRS 86 (116)
Q Consensus 82 l~~~~ 86 (116)
T Consensus 76 i~~~~ 80 (82)
T CHL00005 76 VFKEL 80 (82)
T ss_pred CHHHH
T ss_conf 37765
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=100.00 E-value=8.1e-36 Score=239.73 Aligned_cols=78 Identities=60% Similarity=0.961 Sum_probs=75.6
Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG 81 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G 81 (116)
T Consensus 1 ~vkIRL~R~G~kk~P~YrIVVaDsrs~RDGr~IE~lG~ynP~~--~~~~~v~l~~eri~~Wl~~GAqpSdtV~~ll~~~g 78 (87)
T COG0228 1 MVKIRLARGGSKKRPFYRIVVADSRSPRDGRFIERLGTYNPLL--GKEERVKLDEERILYWLSQGAQPSDTVRRLLKKAG 78 (87)
T ss_pred CEEEEHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCC--CCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9078530178766984799984168888986445400237887--87634788699999999859974489999999852
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Back Show alignment and domain information
Probab=100.00 E-value=3.7e-35 Score=235.71 Aligned_cols=75 Identities=53% Similarity=0.925 Sum_probs=71.8
Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 301412306687888279999206787768410222121567878886447973999999984198356899999997
Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDK 79 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~ 79 (116)
T Consensus 1 mvkIRL~R~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~ydP~~---~~~~~~l~~eri~~Wl~~GAqpS~~V~~Llkk 75 (75)
T PRK00040 1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERVGFYNPLA---KPAEVKLDEERVLYWLGQGAQPTDTVARLLKK 75 (75)
T ss_pred CEEEEHHCCCCCCCCEEEEEEEECCCCCCCCCHHEEEEECCCC---CCCEEEECHHHHHHHHHCCCCCCHHHHHHHCC
T ss_conf 9388120089989985899996266678886100004777989---98669984999999998789868999998639
>TIGR00002 S16 ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms
Back Show alignment and domain information
Probab=99.97 E-value=1.5e-32 Score=219.80 Aligned_cols=81 Identities=56% Similarity=0.948 Sum_probs=78.3
Q ss_pred CHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf 01412306687888279999206787768410222121567878886447973999999984198356899999997298
Q gi|254780712|r 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAGL 82 (116)
Q Consensus 3 vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~Gl 82 (116)
T Consensus 1 vkiRL~r~G~k~~p~Yrivv~d~~~~RdG~~ie~lG~y~P~~~~~~~~~~~l~~~~~~~wl~~Ga~pt~tv~~ll~~~g~ 80 (81)
T TIGR00002 1 VKIRLKRGGRKKRPFYRIVVADSRSPRDGRYIEELGFYNPLLKEDDEERVKLDVERIKYWLSKGAQPTDTVRNLLKKAGV 80 (81)
T ss_pred CEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 91110237765686157886247897454123331544788889875246636799999986699857788999886147
Q ss_pred C
Q ss_conf 6
Q gi|254780712|r 83 I 83 (116)
Q Consensus 83 ~ 83 (116)
T Consensus 81 ~ 81 (81)
T TIGR00002 81 F 81 (81)
T ss_pred C
T ss_conf 9
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities , groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
>pfam00886 Ribosomal_S16 Ribosomal protein S16
Back Show alignment and domain information
Probab=99.93 E-value=2.6e-26 Score=181.86 Aligned_cols=58 Identities=60% Similarity=1.021 Sum_probs=55.3
Q ss_pred HCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCC
Q ss_conf 06687888279999206787768410222121567878886447973999999984198356
Q gi|254780712|r 9 CGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPT 70 (116)
Q Consensus 9 r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS 70 (116)
T Consensus 1 R~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~YdP~~~----~~~~l~~eri~~Wl~~GAqPs 58 (58)
T pfam00886 1 RGGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPIAN----GEVKLDVERIKYWLGKGAQPT 58 (58)
T ss_pred CCCCCCCCEEEEEEEECCCCCCCCCHHEEEEECCCCC----CEEEEEHHHHHHHHHCCCCCC
T ss_conf 9887789868999974777889976103545659998----558982899999998749993
Homologous Domains in SCOP and MMDB Database Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
E-value
Target
116
30S ribosomal protein S16 [Candidatus Liberibacter asia
d2uubp1 83
d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermo
4e-25
d3bn0a1 101
d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeoli
6e-25
d2gy9p1 78
d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia co
6e-23
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]} Length = 83
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]
Score = 107 bits (268), Expect = 4e-25
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
+KIRLA GSK HYRIVV ++R RDGK+IEK+G ++P + L+ + ER ++W
Sbjct: 2 VKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKV--DVERARYW 59
Query: 63 MSKGAQPTDRILFFLDKAGLIKR 85
+S GAQPTD L +AG+ ++
Sbjct: 60 LSVGAQPTDTARRLLRQAGVFRQ 82
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]} Length = 101
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]
Score = 106 bits (265), Expect = 6e-25
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
++IRLA G K YRIVV +++SPR+GK+I+ LGT++P + + + E+++ W
Sbjct: 2 VRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDP----KRKVLINVYPEKVKEW 57
Query: 63 MSKGAQPTDRILFFLDKAGLIKR-SPQNNPKKSQPKKKALER 103
+ KG + + R L G++K P+ K E+
Sbjct: 58 VLKGVELSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEK 99
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]} Length = 78
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]
Score = 99.8 bits (249), Expect = 6e-23
Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
+ IRLA G+K R Y++VVA+SR+ R+G+FIE++G +NP + E ++ +RI HW
Sbjct: 2 VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNP-IASEKEEGTRLDLDRIAHW 60
Query: 63 MSKGAQPTDRILFFLDK 79
+ +GA +DR+ + +
Sbjct: 61 VGQGATISDRVAALIKE 77
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
Probability
Target 116
30S ribosomal protein S16 [Candidatus Liberibacter asia
d2uubp1 83
Ribosomal protein S16 {Thermus thermophilus [TaxId: 274
100.0
d3bn0a1 101
Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}
100.0
d2gy9p1 78
Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
100.0
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.9e-37 Score=245.76 Aligned_cols=83 Identities=46% Similarity=0.765 Sum_probs=79.0
Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG 81 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G 81 (116)
||+|||+|+||||+|||||||+|+|+||||+|||+||||||+. .+++.+.||.||++|||++|||||++|..||+++|
T Consensus 1 MvkIRL~R~G~k~~P~yrIVv~d~r~~rdGk~IE~lG~YnP~~--~~~~~i~l~~eRi~~Wl~~GAqpS~tV~~ll~~~g 78 (83)
T d2uubp1 1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRK--TTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAG 78 (83)
T ss_dssp CEEEEEEECSBTTBCCEEEEEEETTSCTTSCCSEEEEEECTTC--CSSCCEEECHHHHHHHHHHTCEECHHHHHHHHHTT
T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCC--CCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 9388121589989985899997668888995651365787998--98744887799999999977977899999999838
Q ss_pred CCCCC
Q ss_conf 86668
Q gi|254780712|r 82 LIKRS 86 (116)
Q Consensus 82 l~~~~ 86 (116)
+++.+
T Consensus 79 i~~~e 83 (83)
T d2uubp1 79 VFRQE 83 (83)
T ss_dssp SSCCC
T ss_pred CCCCC
T ss_conf 97689
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=5e-37 Score=244.34 Aligned_cols=81 Identities=36% Similarity=0.654 Sum_probs=77.0
Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG 81 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G 81 (116)
+|+|||+|+||||+|||||||+|||+||||+|||+||||||+ +++.|.||.|||.|||++||||||+|.+||+.+|
T Consensus 1 AvkIRL~r~G~k~~p~yrIVv~d~r~~rdGk~iE~lG~ynP~----~~~~i~l~~eri~~Wl~~GAqpS~tV~~lL~~~g 76 (101)
T d3bn0a1 1 AVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPK----RKVLINVYPEKVKEWVLKGVELSHRAKAILWNHG 76 (101)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETT----TTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHTT
T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC----CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 928800018998998368998436888888445106578789----7311223589999999869983899999999859
Q ss_pred CCCCC
Q ss_conf 86668
Q gi|254780712|r 82 LIKRS 86 (116)
Q Consensus 82 l~~~~ 86 (116)
+++..
T Consensus 77 ~~~~~ 81 (101)
T d3bn0a1 77 ILKEV 81 (101)
T ss_dssp HHHHH
T ss_pred CCCCC
T ss_conf 86444
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-35 Score=236.35 Aligned_cols=77 Identities=38% Similarity=0.749 Sum_probs=73.7
Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 301412306687888279999206787768410222121567878886447973999999984198356899999997
Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDK 79 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~ 79 (116)
||+|||+|+||||+|||||||+|+|++|||+|||+||||||++++ +++.+.||.||++|||++|||||++|..||++
T Consensus 1 MvkIRL~r~G~k~~P~YrIVv~d~r~~rdgk~iE~lG~YnP~~~~-~~~~i~l~~eri~~Wl~~GAqps~~V~~LLkk 77 (78)
T d2gy9p1 1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASE-KEEGTRLDLDRIAHWVGQGATISDRVAALIKE 77 (78)
T ss_dssp CEEEEEEECCBTTBCCEEEEEEETTSCTTSCCSEECCEECSSCCS-CSCCEECCHHHHHHHTTTTCEECHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCC-CCCCEEECHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 948831138998998479998666888888442012168786789-86446766999999999759678999999850
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity Alignment graph Length
Definition
E-value
Target
116
30S ribosomal protein S16 [Candidatus Liberibacter
3bn0_A_ 112
(A:) 30S ribosomal protein S16; ribonucleoprotein,
1e-26
3bbn_P_ 88
(P:) Ribosomal protein S16; small ribosomal subuni
3e-24
1jgq_S_ 91
(S:) 30S ribosomal protein S16; ribosome assembly,
2e-23
3i1m_P_ 82
(P:) 30S ribosomal protein S16; ribosome structure
7e-25
>3bn0_A (A:) 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus}Length = 112
Back Hide alignment and structure
Score = 112 bits (283), Expect = 1e-26
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
M ++IRLA G K YRIVV +++SPR+GK+I+ LGT++P + E+++
Sbjct: 1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKV----LINVYPEKVK 56
Query: 61 HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKAL--ERLASKKNADEHA 114
W+ KG + + R L G++K + + + +R + K E A
Sbjct: 57 EWVLKGVELSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEAA 112
>3bbn_P (P:) Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 88
Back Show alignment and structure
Score = 104 bits (262), Expect = 3e-24
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
+K+RL G K R YRIV + RS R+G+ ++K+G ++P + +N I +
Sbjct: 2 VKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDP-----IKSQTYLNVPAILDF 56
Query: 63 MSKGAQPTDRILFFLDKAGLIKRSPQNNPKKS 94
+ KGAQPT+ + L +A + K N K +
Sbjct: 57 LEKGAQPTETVYDILKRAEVFKEFRLNQTKFN 88
>3i1m_P (P:) 30S ribosomal protein S16; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...Length = 82
Back Show alignment and structure
Score = 107 bits (268), Expect = 7e-25
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
+ IRLA G+K R Y++VVA+SR+ R+G+FIE++G +NP + E ++ +RI HW
Sbjct: 2 VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNP-IASEKEEGTRLDLDRIAHW 60
Query: 63 MSKGAQPTDRILFFLDKAGL 82
+ +GA +DR+ + +
Sbjct: 61 VGQGATISDRVAALIKEVNK 80
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity Alignment graph Length
Definition
Probability
Target 116
30S ribosomal protein S16 [Candidatus Liberibacter asia
3bn0_A_ 112
30S ribosomal protein S16; ribonucleoprotein, ribo
100.0
3i1m_P_ 82
30S ribosomal protein S16; ribosome structure, pro
100.0
1jgq_S_ 91
30S ribosomal protein S16; ribosome assembly, prot
100.0
3bbn_P_ 88
Ribosomal protein S16; small ribosomal subunit, sp
100.0
>3bn0_A (A:) 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus}
Back Hide alignment and structure
Probab=100.00 E-value=2.3e-39 Score=261.01 Aligned_cols=95 Identities=34% Similarity=0.582 Sum_probs=84.8
Q ss_pred CCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 93014123066878882799992067877684102221215678788864479739999999841983568999999972
Q gi|254780712|r 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKA 80 (116)
Q Consensus 1 M~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~ 80 (116)
|+|+|||+|+||||+|||||||+|+|++|||+|||+||||||+ +++.+.||+||++|||++|||||++|..||+++
T Consensus 1 MavkIRL~r~G~k~~pfYrIVv~d~r~~rdgk~iE~iG~YdP~----~~k~~~l~~~ri~~Wl~~GAqpt~~V~~ll~~~ 76 (112)
T 3bn0_A 1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPK----RKVLINVYPEKVKEWVLKGVELSHRAKAILWNH 76 (112)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETT----TTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHT
T ss_pred CCEEEEHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC----CCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf 9688712008988898578998645777889742035562799----975423689999999997498479999999976
Q ss_pred CCCCC-CCCCCCHHHHHHHH
Q ss_conf 98666-80005112254288
Q gi|254780712|r 81 GLIKR-SPQNNPKKSQPKKK 99 (116)
Q Consensus 81 Gl~~~-~~~~~~~~~~~~kk 99 (116)
|+++. ++.....+....+.
T Consensus 77 gi~~~~~~~~~~~~~~~~~~ 96 (112)
T 3bn0_A 77 GILKEVVPEGYEMKRVGDYY 96 (112)
T ss_dssp THHHHHCCTTEEEEEETTEE
T ss_pred CCCCCCCCCCCCCCCCCHHH
T ss_conf 97400044555634434132
>3i1m_P (P:) 30S ribosomal protein S16; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Back Show alignment and structure
Probab=100.00 E-value=2.7e-36 Score=242.22 Aligned_cols=81 Identities=37% Similarity=0.712 Sum_probs=78.2
Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG 81 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G 81 (116)
||+|||+|+||||+|||||||+|+|+||||+|||+||||||+++ .+++.+.||.|||+|||++|||||++|.+||+++|
T Consensus 1 mvkIRL~r~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~Y~P~~~-~~~~~i~l~~eri~~Wl~~GAqpt~~V~~ll~~~g 79 (82)
T 3i1m_P 1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS-EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVN 79 (82)
T ss_dssp CEEEEEEECSCTTSCCEEEEEEETTSCTTSCCSEECEEECSCCC-SSSCCEEECHHHHHHHHHTCCEECTTHHHHHTTSC
T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCC-CCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 94882113899899858999966788889857112537888778-98434566799999999975977899999999986
Q ss_pred CC
Q ss_conf 86
Q gi|254780712|r 82 LI 83 (116)
Q Consensus 82 l~ 83 (116)
++
T Consensus 80 i~ 81 (82)
T 3i1m_P 80 KA 81 (82)
T ss_dssp SC
T ss_pred HC
T ss_conf 31
>3bbn_P (P:) Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Back Show alignment and structure
Probab=100.00 E-value=3.5e-36 Score=241.57 Aligned_cols=87 Identities=34% Similarity=0.531 Sum_probs=81.5
Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG 81 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G 81 (116)
||+|||+|+||||+|||||||||+|+||||+|||+||||||++ +.+.||.||++|||++|||||++|..||+++|
T Consensus 1 mvkIRL~r~G~k~~PfYrIVvad~r~~RdGk~iE~lG~YdP~~-----~~i~l~~eri~~WL~~GAqpt~~V~~lL~~~g 75 (88)
T 3bbn_P 1 MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIK-----SQTYLNVPAILDFLEKGAQPTETVYDILKRAE 75 (88)
T ss_dssp CEEECCCCCSCTTCCCCCCCCEETTSCSSSCCSSCCCCBCTTS-----SCBCCCTTTSSSSTTSSCEECTTTSSSSTTTT
T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCHHHCCEECCCC-----CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 9389533589989986899997368778997511327677999-----85404889999999859982899999999828
Q ss_pred CCCCCCCCCCHH
Q ss_conf 866680005112
Q gi|254780712|r 82 LIKRSPQNNPKK 93 (116)
Q Consensus 82 l~~~~~~~~~~~ 93 (116)
+++.++....++
T Consensus 76 ~~~~~~~~~~~k 87 (88)
T 3bbn_P 76 VFKEFRLNQTKF 87 (88)
T ss_dssp SSSCC-------
T ss_pred CCHHHHCCCCCC
T ss_conf 504554266578