HHsearch alignment of GI: 254780712 and MMDB domain: 1jgq_S_
>1jgq_S (S:) 30S ribosomal protein S16; ribosome assembly, protein synthesis, LIFE; HET: 2MG H2U M2G OMC OMG YG PSU 5MC 7MG 5MU 1MA 4SU; 5.00A {Thermus thermophilus}
Probab=100.00 E-value=4e-36 Score=241.24 Aligned_cols=86 Identities=44% Similarity=0.749 Sum_probs=81.8
Q ss_pred CCHHHHHHCCCCCCCEE---EEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 30141230668788827---999920678776841022212156787888644797399999998419835689999999
Q gi|254780712|r 2 TLKIRLACGGSKSRHHY---RIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLD 78 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~y---rIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~ 78 (116)
||+|||+|+||||+||| ||||||||++|||+|||+||||||+. +++++|.||.||++|||++|||||++|+.||+
T Consensus 1 mvkIRL~r~G~k~~pfY~~~rIVv~dsr~~RdGk~iE~lG~Y~P~~--~~~~~i~l~~eri~~WL~~GAqpT~tV~~ll~ 78 (91)
T 1jgq_S 1 MVKIRLARFGSKHNPHYPHYRIVVTDARRKRDGKYIEKIGYYDPRK--TTPDWLKVDVERARYWLSVGAQPTDTARRLLR 78 (91)
T ss_pred CEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHCEEEECCCC--CCCHHHHCCHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 9589442177889999997999997778788898500036764988--88113122899999999878976899999999
Q ss_pred HCCCCCCCCCC
Q ss_conf 72986668000
Q gi|254780712|r 79 KAGLIKRSPQN 89 (116)
Q Consensus 79 ~~Gl~~~~~~~ 89 (116)
++|+++.++..
T Consensus 79 ~~g~~~~~~~~ 89 (91)
T 1jgq_S 79 QAGVFRQEARE 89 (91)
T ss_pred HCCCCCCCCCC
T ss_conf 85987651002