Query         gi|254780712|ref|YP_003065125.1| 30S ribosomal protein S16 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 116
No_of_seqs    112 out of 1084
Neff          5.9 
Searched_HMMs 33803
Date          Wed Jun  1 14:35:51 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780712.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3bn0_A 30S ribosomal protein  100.0 2.3E-39 6.7E-44  261.0  -0.5   95    1-99      1-96  (112)
  2 >3i1m_P 30S ribosomal protein  100.0 2.7E-36 8.1E-41  242.2   7.0   81    2-83      1-81  (82)
  3 >1jgq_S 30S ribosomal protein  100.0   4E-36 1.2E-40  241.2   7.1   86    2-89      1-89  (91)
  4 >3bbn_P Ribosomal protein S16; 100.0 3.5E-36   1E-40  241.6  -5.5   87    2-93      1-87  (88)
  5 >1vbv_A Hypothetical protein B  55.8     8.1 0.00024   20.1   2.4   16   13-28     47-62  (105)
  6 >1dw0_A Cytochrome C; asparagi  31.9      29 0.00086   16.7   2.1   32   28-66     57-88  (112)
  7 >3cps_A Glyceraldehyde 3-phosp  26.8      34   0.001   16.3   1.7   28   14-41    139-166 (166)
  8 >3cmc_O GAPDH, glyceraldehyde-  25.9      39  0.0012   16.0   1.9   29   13-41    135-163 (163)
  9 >3f62_A Interleukin 18 binding  25.3      31 0.00091   16.6   1.3   20   20-39     37-56  (109)
 10 >3doc_A Glyceraldehyde 3-phosp  24.9      43  0.0013   15.7   1.9   29   13-41    136-164 (165)
 11 >1hdg_O Holo-D-glyceraldehyde-  24.8      41  0.0012   15.8   1.8   29   13-41    135-163 (163)
 12 >1u8f_O GAPDH, glyceraldehyde-  24.6      38  0.0011   16.1   1.6   29   13-41    136-164 (164)
 13 >3h9e_A Glyceraldehyde-3-phosp  24.5      38  0.0011   16.0   1.6   28   14-41    137-164 (165)
 14 >2d2i_A Glyceraldehyde 3-phosp  24.4      44  0.0013   15.6   1.9   29   13-41    136-164 (165)
 15 >1e8e_A Cytochrome C''; oxidor  24.1      28 0.00083   16.8   0.9   32   28-66     11-42  (49)
 16 >1gad_O D-glyceraldehyde-3-pho  22.6      42  0.0012   15.8   1.6   28   14-41    137-164 (165)
 17 >1rm4_O Glyceraldehyde 3-phosp  22.5      49  0.0015   15.3   1.9   29   13-41    135-163 (164)
 18 >3hja_A GAPDH, glyceraldehyde-  22.4      59  0.0017   14.9   2.3   28   14-41    139-166 (167)
 19 >2hi0_A Putative phosphoglycol  21.2      28 0.00082   16.9   0.4   28   54-83     21-48  (88)
 20 >3e5r_O PP38, glyceraldehyde-3  20.0      53  0.0016   15.2   1.6   28   14-41    137-164 (164)

No 1  
>>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} (A:)
Probab=100.00  E-value=2.3e-39  Score=261.01  Aligned_cols=95  Identities=34%  Similarity=0.582  Sum_probs=84.8

Q ss_pred             CCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf             93014123066878882799992067877684102221215678788864479739999999841983568999999972
Q gi|254780712|r    1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKA   80 (116)
Q Consensus         1 M~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~   80 (116)
                      |+|+|||+|+||||+|||||||+|+|++|||+|||+||||||+    +++.+.||+||++|||++|||||++|..||+++
T Consensus         1 MavkIRL~r~G~k~~pfYrIVv~d~r~~rdgk~iE~iG~YdP~----~~k~~~l~~~ri~~Wl~~GAqpt~~V~~ll~~~   76 (112)
T 3bn0_A            1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPK----RKVLINVYPEKVKEWVLKGVELSHRAKAILWNH   76 (112)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETT----TTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHT
T ss_pred             CCEEEEHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC----CCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf             9688712008988898578998645777889742035562799----975423689999999997498479999999976


Q ss_pred             CCCCC-CCCCCCHHHHHHHH
Q ss_conf             98666-80005112254288
Q gi|254780712|r   81 GLIKR-SPQNNPKKSQPKKK   99 (116)
Q Consensus        81 Gl~~~-~~~~~~~~~~~~kk   99 (116)
                      |+++. ++.....+....+.
T Consensus        77 gi~~~~~~~~~~~~~~~~~~   96 (112)
T 3bn0_A           77 GILKEVVPEGYEMKRVGDYY   96 (112)
T ss_dssp             THHHHHCCTTEEEEEETTEE
T ss_pred             CCCCCCCCCCCCCCCCCHHH
T ss_conf             97400044555634434132


No 2  
>>3i1m_P 30S ribosomal protein S16; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ... (P:)
Probab=100.00  E-value=2.7e-36  Score=242.22  Aligned_cols=81  Identities=37%  Similarity=0.712  Sum_probs=78.2

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG   81 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G   81 (116)
                      ||+|||+|+||||+|||||||+|+|+||||+|||+||||||+++ .+++.+.||.|||+|||++|||||++|.+||+++|
T Consensus         1 mvkIRL~r~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~Y~P~~~-~~~~~i~l~~eri~~Wl~~GAqpt~~V~~ll~~~g   79 (82)
T 3i1m_P            1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS-EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVN   79 (82)
T ss_dssp             CEEEEEEECSCTTSCCEEEEEEETTSCTTSCCSEECEEECSCCC-SSSCCEEECHHHHHHHHHTCCEECTTHHHHHTTSC
T ss_pred             CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCC-CCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             94882113899899858999966788889857112537888778-98434566799999999975977899999999986


Q ss_pred             CC
Q ss_conf             86
Q gi|254780712|r   82 LI   83 (116)
Q Consensus        82 l~   83 (116)
                      ++
T Consensus        80 i~   81 (82)
T 3i1m_P           80 KA   81 (82)
T ss_dssp             SC
T ss_pred             HC
T ss_conf             31


No 3  
>>1jgq_S 30S ribosomal protein S16; ribosome assembly, protein synthesis, LIFE; HET: 2MG H2U M2G OMC OMG YG PSU 5MC 7MG 5MU 1MA 4SU; 5.00A {Thermus thermophilus} (S:)
Probab=100.00  E-value=4e-36  Score=241.24  Aligned_cols=86  Identities=44%  Similarity=0.749  Sum_probs=81.8

Q ss_pred             CCHHHHHHCCCCCCCEE---EEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             30141230668788827---999920678776841022212156787888644797399999998419835689999999
Q gi|254780712|r    2 TLKIRLACGGSKSRHHY---RIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLD   78 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~y---rIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~   78 (116)
                      ||+|||+|+||||+|||   ||||||||++|||+|||+||||||+.  +++++|.||.||++|||++|||||++|+.||+
T Consensus         1 mvkIRL~r~G~k~~pfY~~~rIVv~dsr~~RdGk~iE~lG~Y~P~~--~~~~~i~l~~eri~~WL~~GAqpT~tV~~ll~   78 (91)
T 1jgq_S            1 MVKIRLARFGSKHNPHYPHYRIVVTDARRKRDGKYIEKIGYYDPRK--TTPDWLKVDVERARYWLSVGAQPTDTARRLLR   78 (91)
T ss_pred             CEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHCEEEECCCC--CCCHHHHCCHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             9589442177889999997999997778788898500036764988--88113122899999999878976899999999


Q ss_pred             HCCCCCCCCCC
Q ss_conf             72986668000
Q gi|254780712|r   79 KAGLIKRSPQN   89 (116)
Q Consensus        79 ~~Gl~~~~~~~   89 (116)
                      ++|+++.++..
T Consensus        79 ~~g~~~~~~~~   89 (91)
T 1jgq_S           79 QAGVFRQEARE   89 (91)
T ss_pred             HCCCCCCCCCC
T ss_conf             85987651002


No 4  
>>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (P:)
Probab=100.00  E-value=3.5e-36  Score=241.57  Aligned_cols=87  Identities=34%  Similarity=0.531  Sum_probs=81.5

Q ss_pred             CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r    2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG   81 (116)
Q Consensus         2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G   81 (116)
                      ||+|||+|+||||+|||||||||+|+||||+|||+||||||++     +.+.||.||++|||++|||||++|..||+++|
T Consensus         1 mvkIRL~r~G~k~~PfYrIVvad~r~~RdGk~iE~lG~YdP~~-----~~i~l~~eri~~WL~~GAqpt~~V~~lL~~~g   75 (88)
T 3bbn_P            1 MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIK-----SQTYLNVPAILDFLEKGAQPTETVYDILKRAE   75 (88)
T ss_dssp             CEEECCCCCSCTTCCCCCCCCEETTSCSSSCCSSCCCCBCTTS-----SCBCCCTTTSSSSTTSSCEECTTTSSSSTTTT
T ss_pred             CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCHHHCCEECCCC-----CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             9389533589989986899997368778997511327677999-----85404889999999859982899999999828


Q ss_pred             CCCCCCCCCCHH
Q ss_conf             866680005112
Q gi|254780712|r   82 LIKRSPQNNPKK   93 (116)
Q Consensus        82 l~~~~~~~~~~~   93 (116)
                      +++.++....++
T Consensus        76 ~~~~~~~~~~~k   87 (88)
T 3bbn_P           76 VFKEFRLNQTKF   87 (88)
T ss_dssp             SSSCC-------
T ss_pred             CCHHHHCCCCCC
T ss_conf             504554266578


No 5  
>>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} (A:)
Probab=55.79  E-value=8.1  Score=20.12  Aligned_cols=16  Identities=13%  Similarity=0.395  Sum_probs=13.1

Q ss_pred             CCCCEEEEEEEECCCC
Q ss_conf             7888279999206787
Q gi|254780712|r   13 KSRHHYRIVVANSRSP   28 (116)
Q Consensus        13 k~rp~yrIVvadsr~~   28 (116)
                      +++|||++.|.|...+
T Consensus        47 k~qPfY~vLv~~~~~~   62 (105)
T 1vbv_A           47 RAAPWYHVVMEDDNGL   62 (105)
T ss_dssp             -CCCEEEEEEECSSCC
T ss_pred             CCCCEEEEEEECCCCC
T ss_conf             7897058999848986


No 6  
>>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} (A:)
Probab=31.94  E-value=29  Score=16.75  Aligned_cols=32  Identities=38%  Similarity=0.789  Sum_probs=25.5

Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCC
Q ss_conf             776841022212156787888644797399999998419
Q gi|254780712|r   28 PRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKG   66 (116)
Q Consensus        28 ~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~G   66 (116)
                      -+.||.||      ||.|.-||+++. |..+|..|+...
T Consensus        57 ~~TGK~I~------PlAps~Np~Rft-D~akvEKWF~RN   88 (112)
T 1dw0_A           57 TRTGKEIA------PLAPSATPDRFT-DSARVEKWLGRN   88 (112)
T ss_dssp             CTTSCEEC------CSSTTTSTTTTC-CHHHHHHHHHHH
T ss_pred             CCCCCCCC------CCCCCCCHHHCC-CHHHHHHHHHHH
T ss_conf             66688856------668766966507-889999999710


No 7  
>>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics, oxidoreductase; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* (A:168-333)
Probab=26.81  E-value=34  Score=16.32  Aligned_cols=28  Identities=11%  Similarity=0.144  Sum_probs=19.9

Q ss_pred             CCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             8882799992067877684102221215
Q gi|254780712|r   14 SRHHYRIVVANSRSPRDGKFIEKLGTWN   41 (116)
Q Consensus        14 ~rp~yrIVvadsr~~Rdgk~iE~lG~Yn   41 (116)
                      +.|+=-|+-+.+..-.+|.++-.++|||
T Consensus       139 ~~~~S~i~D~~~t~v~~~~~vKv~aWYD  166 (166)
T 3cps_A          139 GCKYSSIFDKNACIALNDSFVKLISWYD  166 (166)
T ss_dssp             TCCCSEEEEGGGCEEEETTEEEEEEEEC
T ss_pred             CCCCHHEEEHHHCEEECCCEEEEEEEEC
T ss_conf             9995114884008897898999999988


No 8  
>>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} (O:151-313)
Probab=25.90  E-value=39  Score=15.97  Aligned_cols=29  Identities=17%  Similarity=0.182  Sum_probs=21.3

Q ss_pred             CCCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             78882799992067877684102221215
Q gi|254780712|r   13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN   41 (116)
Q Consensus        13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn   41 (116)
                      .+.|+=-|+-+.+....+|.++-.++|||
T Consensus       135 ~~~~~Ssi~D~~~t~v~~~~~vKi~aWYD  163 (163)
T 3cmc_O          135 NGSTVSSTIDALSTMVIDGKMVKVVSWYD  163 (163)
T ss_dssp             TTCCSSEEEEGGGCEEETTTEEEEEEEEC
T ss_pred             CCCCCCEEEECCCCEEECCCEEEEEEEEC
T ss_conf             89994337880448897798899999988


No 9  
>>3f62_A Interleukin 18 binding protein; immunoglobulin, IL-18, beta trefoil, cytokine, secreted; 2.00A {Ectromelia virus} (A:)
Probab=25.25  E-value=31  Score=16.60  Aligned_cols=20  Identities=40%  Similarity=0.629  Sum_probs=17.3

Q ss_pred             EEEEECCCCCCCCCEEEEEE
Q ss_conf             99920678776841022212
Q gi|254780712|r   20 IVVANSRSPRDGKFIEKLGT   39 (116)
Q Consensus        20 IVvadsr~~Rdgk~iE~lG~   39 (116)
                      -.+-|-++--|-+|||.||-
T Consensus        37 wlakdm~sdedtkfiehlgd   56 (109)
T 3f62_A           37 WLAKDMKSDEDTKFIEHLGD   56 (109)
T ss_dssp             EEEEETTSCCCCEEGGGSCT
T ss_pred             HHHHHHCCCCHHHHHHHHCC
T ss_conf             66644145421458998646


No 10 
>>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} (A:152-316)
Probab=24.92  E-value=43  Score=15.73  Aligned_cols=29  Identities=14%  Similarity=0.303  Sum_probs=22.6

Q ss_pred             CCCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             78882799992067877684102221215
Q gi|254780712|r   13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN   41 (116)
Q Consensus        13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn   41 (116)
                      .+.|+=-|+-+.+..-.+|.++-.++|||
T Consensus       136 ~~~~~S~i~D~~~t~v~~~~~vKi~~WYD  164 (165)
T 3doc_A          136 NHDSHSSVFHTDQTKVMDGTMVRILSWYD  164 (165)
T ss_dssp             TTCCCSEEEEGGGCEEETTTEEEEEEEEC
T ss_pred             CCCCCHHEEEHHHCEEECCCEEEEEEEEC
T ss_conf             88994042873030896798899999988


No 11 
>>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} (O:151-313)
Probab=24.81  E-value=41  Score=15.85  Aligned_cols=29  Identities=14%  Similarity=0.118  Sum_probs=21.3

Q ss_pred             CCCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             78882799992067877684102221215
Q gi|254780712|r   13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN   41 (116)
Q Consensus        13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn   41 (116)
                      .+.|+=-||-+.+....+|.++-.++|||
T Consensus       135 ~~~~~Ssi~D~~~t~v~~~~~vKi~aWYD  163 (163)
T 1hdg_O          135 IGTTFSGIFDATITNVIGGKLVKVASWYD  163 (163)
T ss_dssp             TTCCCSEEEETTTCEEETTTEEEEEEEEC
T ss_pred             CCCCCCEEEEHHHCEEECCCEEEEEEEEC
T ss_conf             89984027880031997898899999987


No 12 
>>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} (O:152-315)
Probab=24.55  E-value=38  Score=16.06  Aligned_cols=29  Identities=14%  Similarity=0.234  Sum_probs=21.2

Q ss_pred             CCCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             78882799992067877684102221215
Q gi|254780712|r   13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN   41 (116)
Q Consensus        13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn   41 (116)
                      .+.|+=-|+-+.+..-.+|.++-.++|||
T Consensus       136 ~~~~~s~i~D~~~t~v~~~~~vKv~aWYD  164 (164)
T 1u8f_O          136 NSDTHSSTFDAGAGIALNDHFVKLISWYD  164 (164)
T ss_dssp             TTCCCSEEEETTTCEEEETTEEEEEEEEC
T ss_pred             CCCCCCEEEECCCCEEECCCEEEEEEEEC
T ss_conf             89985027982436898897899999977


No 13 
>>3h9e_A Glyceraldehyde-3-phosphate dehydrogenase, testis- specific; oxidoreductase, structural genomics, structural genomics consortium, SGC, cytoplasm; HET: NAD; 1.72A {Homo sapiens} PDB: 2vyn_D* 2vyv_D* (A:156-320)
Probab=24.47  E-value=38  Score=16.04  Aligned_cols=28  Identities=14%  Similarity=0.273  Sum_probs=21.2

Q ss_pred             CCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             8882799992067877684102221215
Q gi|254780712|r   14 SRHHYRIVVANSRSPRDGKFIEKLGTWN   41 (116)
Q Consensus        14 ~rp~yrIVvadsr~~Rdgk~iE~lG~Yn   41 (116)
                      +.|+=-|+-+.+..-.+|.++-.++|||
T Consensus       137 ~~~~Ssi~D~~~t~v~~~~~vKv~aWYD  164 (165)
T 3h9e_A          137 GDTHSSIFDAKAGIALNDNFVKLISWYD  164 (165)
T ss_dssp             TCCCSEEEETTTCEEEETTEEEEEEEEC
T ss_pred             CCCCCEEEECCCCEEECCCEEEEEEEEC
T ss_conf             8985217981218897899899999987


No 14 
>>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A (A:154-318)
Probab=24.39  E-value=44  Score=15.63  Aligned_cols=29  Identities=14%  Similarity=0.263  Sum_probs=22.7

Q ss_pred             CCCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             78882799992067877684102221215
Q gi|254780712|r   13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN   41 (116)
Q Consensus        13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn   41 (116)
                      .+.|+=-|+-+.+....+|.++-.++|||
T Consensus       136 ~~~~~S~i~D~~~t~v~~~~~vKi~~WYD  164 (165)
T 2d2i_A          136 RGTDESSIVDSSLTLVMDGDLVKVIAWYD  164 (165)
T ss_dssp             TTCCCSEEEEGGGCEEETTTEEEEEEEEC
T ss_pred             CCCCCHHEEECCCCEEECCCEEEEEEEEC
T ss_conf             89982543851105897798899999988


No 15 
>>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} (A:54-102)
Probab=24.14  E-value=28  Score=16.82  Aligned_cols=32  Identities=31%  Similarity=0.508  Sum_probs=25.0

Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCC
Q ss_conf             776841022212156787888644797399999998419
Q gi|254780712|r   28 PRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKG   66 (116)
Q Consensus        28 ~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~G   66 (116)
                      .+.||.||      ||.+.-+++++. |...|..|+...
T Consensus        11 ~~TgK~I~------PmAps~np~Rft-D~akVEKwF~RN   42 (49)
T 1e8e_A           11 IVTGKEIP------PLAPRVNTKRFT-DIDKVEDEFTKH   42 (49)
T ss_dssp             TTTCCCBC------CCCTTTSTTSSC-CSTTHHHHHHHH
T ss_pred             CCCCCCCC------CCCCCCCHHHCC-CHHHHHHHHHCC
T ss_conf             65788646------668766956407-889999999710


No 16 
>>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} (O:149-313)
Probab=22.64  E-value=42  Score=15.75  Aligned_cols=28  Identities=7%  Similarity=0.152  Sum_probs=21.3

Q ss_pred             CCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             8882799992067877684102221215
Q gi|254780712|r   14 SRHHYRIVVANSRSPRDGKFIEKLGTWN   41 (116)
Q Consensus        14 ~rp~yrIVvadsr~~Rdgk~iE~lG~Yn   41 (116)
                      +.|+=-|+-+.+..-.+|.++-.++|||
T Consensus       137 g~~~Ssi~d~~~t~v~~~~~vKv~~WYD  164 (165)
T 1gad_O          137 GEVCTSVFDAKAGIALNDNFVKLVSWYD  164 (165)
T ss_dssp             TCCSSEEEETTTCEEEETTEEEEEEEEC
T ss_pred             CCCCCEEEECCCCEEECCCEEEEEEEEC
T ss_conf             9985248980317998898899999998


No 17 
>>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} (O:153-316)
Probab=22.51  E-value=49  Score=15.33  Aligned_cols=29  Identities=0%  Similarity=0.052  Sum_probs=21.8

Q ss_pred             CCCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             78882799992067877684102221215
Q gi|254780712|r   13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN   41 (116)
Q Consensus        13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn   41 (116)
                      .+.|+=-|+-+.+..-.+|.++-.++|||
T Consensus       135 ~~~~~Ssi~D~~~t~v~~~~~vKv~aWYD  163 (164)
T 1rm4_O          135 RCTDVSSTIDSSLTMVMGDDMVKVIAWYD  163 (164)
T ss_dssp             TTCCSSEEEEGGGCEEETTTEEEEEEEEC
T ss_pred             CCCCCCEEEECCCCEEECCCEEEEEEEEC
T ss_conf             89997548891207896897899999988


No 18 
>>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} (A:173-339)
Probab=22.38  E-value=59  Score=14.88  Aligned_cols=28  Identities=18%  Similarity=0.187  Sum_probs=20.8

Q ss_pred             CCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             8882799992067877684102221215
Q gi|254780712|r   14 SRHHYRIVVANSRSPRDGKFIEKLGTWN   41 (116)
Q Consensus        14 ~rp~yrIVvadsr~~Rdgk~iE~lG~Yn   41 (116)
                      +.|+=-|+-+.+..-.+|.++-.++|||
T Consensus       139 ~~~~S~i~D~~~t~v~~~~~vKi~~WYD  166 (167)
T 3hja_A          139 GNSHSSIVDGLETMVLENGFAKILSWYD  166 (167)
T ss_dssp             TCCCSEEEEGGGCEECSTTEEEEEEEEC
T ss_pred             CCCCHHEEECCCCEEECCCEEEEEEEEC
T ss_conf             9984314871128896799899999988


No 19 
>>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} (A:19-106)
Probab=21.17  E-value=28  Score=16.85  Aligned_cols=28  Identities=14%  Similarity=0.156  Sum_probs=20.2

Q ss_pred             ECHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf             739999999841983568999999972986
Q gi|254780712|r   54 MNFERIQHWMSKGAQPTDRILFFLDKAGLI   83 (116)
Q Consensus        54 l~~eRi~yWL~~GAqpS~~V~~LL~~~Gl~   83 (116)
                      ...|.|+.|+|+||..  =|.+.|...|..
T Consensus        21 ~~~e~vr~~VG~Ga~~--LieRaL~~~~~~   48 (88)
T 2hi0_A           21 FTVEDIKNFFGSGVVV--AVTRALAYEAGS   48 (88)
T ss_dssp             CCHHHHHHHCSSCHHH--HHHHHHHHHTTC
T ss_pred             CCHHHHHHHHCCCHHH--HHHHHHHHHCCH
T ss_conf             9999999995775377--899998750330


No 20 
>>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O (O:154-317)
Probab=20.04  E-value=53  Score=15.16  Aligned_cols=28  Identities=11%  Similarity=0.200  Sum_probs=17.1

Q ss_pred             CCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             8882799992067877684102221215
Q gi|254780712|r   14 SRHHYRIVVANSRSPRDGKFIEKLGTWN   41 (116)
Q Consensus        14 ~rp~yrIVvadsr~~Rdgk~iE~lG~Yn   41 (116)
                      +.|+=-|+-+.+....+|.++-.++|||
T Consensus       137 ~~~~Ssi~D~~~t~v~~~~~vKv~aWYD  164 (164)
T 3e5r_O          137 GDSRSSIFDAKAGIALNDNFVKLVAWYD  164 (164)
T ss_dssp             TCCCSEEEETTTCEEEETTEEEEEEEEC
T ss_pred             CCCCCEEEECCCCEEECCCEEEEEEEEC
T ss_conf             8996237981337897899999999988


Done!