Query gi|254780712|ref|YP_003065125.1| 30S ribosomal protein S16 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 116 No_of_seqs 112 out of 1084 Neff 5.9 Searched_HMMs 33803 Date Wed Jun 1 14:35:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780712.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3bn0_A 30S ribosomal protein 100.0 2.3E-39 6.7E-44 261.0 -0.5 95 1-99 1-96 (112) 2 >3i1m_P 30S ribosomal protein 100.0 2.7E-36 8.1E-41 242.2 7.0 81 2-83 1-81 (82) 3 >1jgq_S 30S ribosomal protein 100.0 4E-36 1.2E-40 241.2 7.1 86 2-89 1-89 (91) 4 >3bbn_P Ribosomal protein S16; 100.0 3.5E-36 1E-40 241.6 -5.5 87 2-93 1-87 (88) 5 >1vbv_A Hypothetical protein B 55.8 8.1 0.00024 20.1 2.4 16 13-28 47-62 (105) 6 >1dw0_A Cytochrome C; asparagi 31.9 29 0.00086 16.7 2.1 32 28-66 57-88 (112) 7 >3cps_A Glyceraldehyde 3-phosp 26.8 34 0.001 16.3 1.7 28 14-41 139-166 (166) 8 >3cmc_O GAPDH, glyceraldehyde- 25.9 39 0.0012 16.0 1.9 29 13-41 135-163 (163) 9 >3f62_A Interleukin 18 binding 25.3 31 0.00091 16.6 1.3 20 20-39 37-56 (109) 10 >3doc_A Glyceraldehyde 3-phosp 24.9 43 0.0013 15.7 1.9 29 13-41 136-164 (165) 11 >1hdg_O Holo-D-glyceraldehyde- 24.8 41 0.0012 15.8 1.8 29 13-41 135-163 (163) 12 >1u8f_O GAPDH, glyceraldehyde- 24.6 38 0.0011 16.1 1.6 29 13-41 136-164 (164) 13 >3h9e_A Glyceraldehyde-3-phosp 24.5 38 0.0011 16.0 1.6 28 14-41 137-164 (165) 14 >2d2i_A Glyceraldehyde 3-phosp 24.4 44 0.0013 15.6 1.9 29 13-41 136-164 (165) 15 >1e8e_A Cytochrome C''; oxidor 24.1 28 0.00083 16.8 0.9 32 28-66 11-42 (49) 16 >1gad_O D-glyceraldehyde-3-pho 22.6 42 0.0012 15.8 1.6 28 14-41 137-164 (165) 17 >1rm4_O Glyceraldehyde 3-phosp 22.5 49 0.0015 15.3 1.9 29 13-41 135-163 (164) 18 >3hja_A GAPDH, glyceraldehyde- 22.4 59 0.0017 14.9 2.3 28 14-41 139-166 (167) 19 >2hi0_A Putative phosphoglycol 21.2 28 0.00082 16.9 0.4 28 54-83 21-48 (88) 20 >3e5r_O PP38, glyceraldehyde-3 20.0 53 0.0016 15.2 1.6 28 14-41 137-164 (164) No 1 >>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} (A:) Probab=100.00 E-value=2.3e-39 Score=261.01 Aligned_cols=95 Identities=34% Similarity=0.582 Sum_probs=84.8 Q ss_pred CCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 93014123066878882799992067877684102221215678788864479739999999841983568999999972 Q gi|254780712|r 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKA 80 (116) Q Consensus 1 M~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~ 80 (116) |+|+|||+|+||||+|||||||+|+|++|||+|||+||||||+ +++.+.||+||++|||++|||||++|..||+++ T Consensus 1 MavkIRL~r~G~k~~pfYrIVv~d~r~~rdgk~iE~iG~YdP~----~~k~~~l~~~ri~~Wl~~GAqpt~~V~~ll~~~ 76 (112) T 3bn0_A 1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPK----RKVLINVYPEKVKEWVLKGVELSHRAKAILWNH 76 (112) T ss_dssp -CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETT----TTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHT T ss_pred CCEEEEHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC----CCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHC T ss_conf 9688712008988898578998645777889742035562799----975423689999999997498479999999976 Q ss_pred CCCCC-CCCCCCHHHHHHHH Q ss_conf 98666-80005112254288 Q gi|254780712|r 81 GLIKR-SPQNNPKKSQPKKK 99 (116) Q Consensus 81 Gl~~~-~~~~~~~~~~~~kk 99 (116) |+++. ++.....+....+. T Consensus 77 gi~~~~~~~~~~~~~~~~~~ 96 (112) T 3bn0_A 77 GILKEVVPEGYEMKRVGDYY 96 (112) T ss_dssp THHHHHCCTTEEEEEETTEE T ss_pred CCCCCCCCCCCCCCCCCHHH T ss_conf 97400044555634434132 No 2 >>3i1m_P 30S ribosomal protein S16; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ... (P:) Probab=100.00 E-value=2.7e-36 Score=242.22 Aligned_cols=81 Identities=37% Similarity=0.712 Sum_probs=78.2 Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 30141230668788827999920678776841022212156787888644797399999998419835689999999729 Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG 81 (116) Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G 81 (116) ||+|||+|+||||+|||||||+|+|+||||+|||+||||||+++ .+++.+.||.|||+|||++|||||++|.+||+++| T Consensus 1 mvkIRL~r~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~Y~P~~~-~~~~~i~l~~eri~~Wl~~GAqpt~~V~~ll~~~g 79 (82) T 3i1m_P 1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS-EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVN 79 (82) T ss_dssp CEEEEEEECSCTTSCCEEEEEEETTSCTTSCCSEECEEECSCCC-SSSCCEEECHHHHHHHHHTCCEECTTHHHHHTTSC T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCC-CCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 94882113899899858999966788889857112537888778-98434566799999999975977899999999986 Q ss_pred CC Q ss_conf 86 Q gi|254780712|r 82 LI 83 (116) Q Consensus 82 l~ 83 (116) ++ T Consensus 80 i~ 81 (82) T 3i1m_P 80 KA 81 (82) T ss_dssp SC T ss_pred HC T ss_conf 31 No 3 >>1jgq_S 30S ribosomal protein S16; ribosome assembly, protein synthesis, LIFE; HET: 2MG H2U M2G OMC OMG YG PSU 5MC 7MG 5MU 1MA 4SU; 5.00A {Thermus thermophilus} (S:) Probab=100.00 E-value=4e-36 Score=241.24 Aligned_cols=86 Identities=44% Similarity=0.749 Sum_probs=81.8 Q ss_pred CCHHHHHHCCCCCCCEE---EEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 30141230668788827---999920678776841022212156787888644797399999998419835689999999 Q gi|254780712|r 2 TLKIRLACGGSKSRHHY---RIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLD 78 (116) Q Consensus 2 ~vkIRL~r~G~k~rp~y---rIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~ 78 (116) ||+|||+|+||||+||| ||||||||++|||+|||+||||||+. +++++|.||.||++|||++|||||++|+.||+ T Consensus 1 mvkIRL~r~G~k~~pfY~~~rIVv~dsr~~RdGk~iE~lG~Y~P~~--~~~~~i~l~~eri~~WL~~GAqpT~tV~~ll~ 78 (91) T 1jgq_S 1 MVKIRLARFGSKHNPHYPHYRIVVTDARRKRDGKYIEKIGYYDPRK--TTPDWLKVDVERARYWLSVGAQPTDTARRLLR 78 (91) T ss_pred CEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHCEEEECCCC--CCCHHHHCCHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 9589442177889999997999997778788898500036764988--88113122899999999878976899999999 Q ss_pred HCCCCCCCCCC Q ss_conf 72986668000 Q gi|254780712|r 79 KAGLIKRSPQN 89 (116) Q Consensus 79 ~~Gl~~~~~~~ 89 (116) ++|+++.++.. T Consensus 79 ~~g~~~~~~~~ 89 (91) T 1jgq_S 79 QAGVFRQEARE 89 (91) T ss_pred HCCCCCCCCCC T ss_conf 85987651002 No 4 >>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (P:) Probab=100.00 E-value=3.5e-36 Score=241.57 Aligned_cols=87 Identities=34% Similarity=0.531 Sum_probs=81.5 Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 30141230668788827999920678776841022212156787888644797399999998419835689999999729 Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG 81 (116) Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G 81 (116) ||+|||+|+||||+|||||||||+|+||||+|||+||||||++ +.+.||.||++|||++|||||++|..||+++| T Consensus 1 mvkIRL~r~G~k~~PfYrIVvad~r~~RdGk~iE~lG~YdP~~-----~~i~l~~eri~~WL~~GAqpt~~V~~lL~~~g 75 (88) T 3bbn_P 1 MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIK-----SQTYLNVPAILDFLEKGAQPTETVYDILKRAE 75 (88) T ss_dssp CEEECCCCCSCTTCCCCCCCCEETTSCSSSCCSSCCCCBCTTS-----SCBCCCTTTSSSSTTSSCEECTTTSSSSTTTT T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCHHHCCEECCCC-----CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC T ss_conf 9389533589989986899997368778997511327677999-----85404889999999859982899999999828 Q ss_pred CCCCCCCCCCHH Q ss_conf 866680005112 Q gi|254780712|r 82 LIKRSPQNNPKK 93 (116) Q Consensus 82 l~~~~~~~~~~~ 93 (116) +++.++....++ T Consensus 76 ~~~~~~~~~~~k 87 (88) T 3bbn_P 76 VFKEFRLNQTKF 87 (88) T ss_dssp SSSCC------- T ss_pred CCHHHHCCCCCC T ss_conf 504554266578 No 5 >>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} (A:) Probab=55.79 E-value=8.1 Score=20.12 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=13.1 Q ss_pred CCCCEEEEEEEECCCC Q ss_conf 7888279999206787 Q gi|254780712|r 13 KSRHHYRIVVANSRSP 28 (116) Q Consensus 13 k~rp~yrIVvadsr~~ 28 (116) +++|||++.|.|...+ T Consensus 47 k~qPfY~vLv~~~~~~ 62 (105) T 1vbv_A 47 RAAPWYHVVMEDDNGL 62 (105) T ss_dssp -CCCEEEEEEECSSCC T ss_pred CCCCEEEEEEECCCCC T ss_conf 7897058999848986 No 6 >>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} (A:) Probab=31.94 E-value=29 Score=16.75 Aligned_cols=32 Identities=38% Similarity=0.789 Sum_probs=25.5 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCC Q ss_conf 776841022212156787888644797399999998419 Q gi|254780712|r 28 PRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKG 66 (116) Q Consensus 28 ~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~G 66 (116) -+.||.|| ||.|.-||+++. |..+|..|+... T Consensus 57 ~~TGK~I~------PlAps~Np~Rft-D~akvEKWF~RN 88 (112) T 1dw0_A 57 TRTGKEIA------PLAPSATPDRFT-DSARVEKWLGRN 88 (112) T ss_dssp CTTSCEEC------CSSTTTSTTTTC-CHHHHHHHHHHH T ss_pred CCCCCCCC------CCCCCCCHHHCC-CHHHHHHHHHHH T ss_conf 66688856------668766966507-889999999710 No 7 >>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics, oxidoreductase; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* (A:168-333) Probab=26.81 E-value=34 Score=16.32 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=19.9 Q ss_pred CCCEEEEEEEECCCCCCCCCEEEEEEEC Q ss_conf 8882799992067877684102221215 Q gi|254780712|r 14 SRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116) Q Consensus 14 ~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116) +.|+=-|+-+.+..-.+|.++-.++||| T Consensus 139 ~~~~S~i~D~~~t~v~~~~~vKv~aWYD 166 (166) T 3cps_A 139 GCKYSSIFDKNACIALNDSFVKLISWYD 166 (166) T ss_dssp TCCCSEEEEGGGCEEEETTEEEEEEEEC T ss_pred CCCCHHEEEHHHCEEECCCEEEEEEEEC T ss_conf 9995114884008897898999999988 No 8 >>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} (O:151-313) Probab=25.90 E-value=39 Score=15.97 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=21.3 Q ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEEEC Q ss_conf 78882799992067877684102221215 Q gi|254780712|r 13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116) Q Consensus 13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116) .+.|+=-|+-+.+....+|.++-.++||| T Consensus 135 ~~~~~Ssi~D~~~t~v~~~~~vKi~aWYD 163 (163) T 3cmc_O 135 NGSTVSSTIDALSTMVIDGKMVKVVSWYD 163 (163) T ss_dssp TTCCSSEEEEGGGCEEETTTEEEEEEEEC T ss_pred CCCCCCEEEECCCCEEECCCEEEEEEEEC T ss_conf 89994337880448897798899999988 No 9 >>3f62_A Interleukin 18 binding protein; immunoglobulin, IL-18, beta trefoil, cytokine, secreted; 2.00A {Ectromelia virus} (A:) Probab=25.25 E-value=31 Score=16.60 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=17.3 Q ss_pred EEEEECCCCCCCCCEEEEEE Q ss_conf 99920678776841022212 Q gi|254780712|r 20 IVVANSRSPRDGKFIEKLGT 39 (116) Q Consensus 20 IVvadsr~~Rdgk~iE~lG~ 39 (116) -.+-|-++--|-+|||.||- T Consensus 37 wlakdm~sdedtkfiehlgd 56 (109) T 3f62_A 37 WLAKDMKSDEDTKFIEHLGD 56 (109) T ss_dssp EEEEETTSCCCCEEGGGSCT T ss_pred HHHHHHCCCCHHHHHHHHCC T ss_conf 66644145421458998646 No 10 >>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} (A:152-316) Probab=24.92 E-value=43 Score=15.73 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=22.6 Q ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEEEC Q ss_conf 78882799992067877684102221215 Q gi|254780712|r 13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116) Q Consensus 13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116) .+.|+=-|+-+.+..-.+|.++-.++||| T Consensus 136 ~~~~~S~i~D~~~t~v~~~~~vKi~~WYD 164 (165) T 3doc_A 136 NHDSHSSVFHTDQTKVMDGTMVRILSWYD 164 (165) T ss_dssp TTCCCSEEEEGGGCEEETTTEEEEEEEEC T ss_pred CCCCCHHEEEHHHCEEECCCEEEEEEEEC T ss_conf 88994042873030896798899999988 No 11 >>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} (O:151-313) Probab=24.81 E-value=41 Score=15.85 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=21.3 Q ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEEEC Q ss_conf 78882799992067877684102221215 Q gi|254780712|r 13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116) Q Consensus 13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116) .+.|+=-||-+.+....+|.++-.++||| T Consensus 135 ~~~~~Ssi~D~~~t~v~~~~~vKi~aWYD 163 (163) T 1hdg_O 135 IGTTFSGIFDATITNVIGGKLVKVASWYD 163 (163) T ss_dssp TTCCCSEEEETTTCEEETTTEEEEEEEEC T ss_pred CCCCCCEEEEHHHCEEECCCEEEEEEEEC T ss_conf 89984027880031997898899999987 No 12 >>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} (O:152-315) Probab=24.55 E-value=38 Score=16.06 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=21.2 Q ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEEEC Q ss_conf 78882799992067877684102221215 Q gi|254780712|r 13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116) Q Consensus 13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116) .+.|+=-|+-+.+..-.+|.++-.++||| T Consensus 136 ~~~~~s~i~D~~~t~v~~~~~vKv~aWYD 164 (164) T 1u8f_O 136 NSDTHSSTFDAGAGIALNDHFVKLISWYD 164 (164) T ss_dssp TTCCCSEEEETTTCEEEETTEEEEEEEEC T ss_pred CCCCCCEEEECCCCEEECCCEEEEEEEEC T ss_conf 89985027982436898897899999977 No 13 >>3h9e_A Glyceraldehyde-3-phosphate dehydrogenase, testis- specific; oxidoreductase, structural genomics, structural genomics consortium, SGC, cytoplasm; HET: NAD; 1.72A {Homo sapiens} PDB: 2vyn_D* 2vyv_D* (A:156-320) Probab=24.47 E-value=38 Score=16.04 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=21.2 Q ss_pred CCCEEEEEEEECCCCCCCCCEEEEEEEC Q ss_conf 8882799992067877684102221215 Q gi|254780712|r 14 SRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116) Q Consensus 14 ~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116) +.|+=-|+-+.+..-.+|.++-.++||| T Consensus 137 ~~~~Ssi~D~~~t~v~~~~~vKv~aWYD 164 (165) T 3h9e_A 137 GDTHSSIFDAKAGIALNDNFVKLISWYD 164 (165) T ss_dssp TCCCSEEEETTTCEEEETTEEEEEEEEC T ss_pred CCCCCEEEECCCCEEECCCEEEEEEEEC T ss_conf 8985217981218897899899999987 No 14 >>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A (A:154-318) Probab=24.39 E-value=44 Score=15.63 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=22.7 Q ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEEEC Q ss_conf 78882799992067877684102221215 Q gi|254780712|r 13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116) Q Consensus 13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116) .+.|+=-|+-+.+....+|.++-.++||| T Consensus 136 ~~~~~S~i~D~~~t~v~~~~~vKi~~WYD 164 (165) T 2d2i_A 136 RGTDESSIVDSSLTLVMDGDLVKVIAWYD 164 (165) T ss_dssp TTCCCSEEEEGGGCEEETTTEEEEEEEEC T ss_pred CCCCCHHEEECCCCEEECCCEEEEEEEEC T ss_conf 89982543851105897798899999988 No 15 >>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} (A:54-102) Probab=24.14 E-value=28 Score=16.82 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=25.0 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCC Q ss_conf 776841022212156787888644797399999998419 Q gi|254780712|r 28 PRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKG 66 (116) Q Consensus 28 ~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~G 66 (116) .+.||.|| ||.+.-+++++. |...|..|+... T Consensus 11 ~~TgK~I~------PmAps~np~Rft-D~akVEKwF~RN 42 (49) T 1e8e_A 11 IVTGKEIP------PLAPRVNTKRFT-DIDKVEDEFTKH 42 (49) T ss_dssp TTTCCCBC------CCCTTTSTTSSC-CSTTHHHHHHHH T ss_pred CCCCCCCC------CCCCCCCHHHCC-CHHHHHHHHHCC T ss_conf 65788646------668766956407-889999999710 No 16 >>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} (O:149-313) Probab=22.64 E-value=42 Score=15.75 Aligned_cols=28 Identities=7% Similarity=0.152 Sum_probs=21.3 Q ss_pred CCCEEEEEEEECCCCCCCCCEEEEEEEC Q ss_conf 8882799992067877684102221215 Q gi|254780712|r 14 SRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116) Q Consensus 14 ~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116) +.|+=-|+-+.+..-.+|.++-.++||| T Consensus 137 g~~~Ssi~d~~~t~v~~~~~vKv~~WYD 164 (165) T 1gad_O 137 GEVCTSVFDAKAGIALNDNFVKLVSWYD 164 (165) T ss_dssp TCCSSEEEETTTCEEEETTEEEEEEEEC T ss_pred CCCCCEEEECCCCEEECCCEEEEEEEEC T ss_conf 9985248980317998898899999998 No 17 >>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} (O:153-316) Probab=22.51 E-value=49 Score=15.33 Aligned_cols=29 Identities=0% Similarity=0.052 Sum_probs=21.8 Q ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEEEC Q ss_conf 78882799992067877684102221215 Q gi|254780712|r 13 KSRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116) Q Consensus 13 k~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116) .+.|+=-|+-+.+..-.+|.++-.++||| T Consensus 135 ~~~~~Ssi~D~~~t~v~~~~~vKv~aWYD 163 (164) T 1rm4_O 135 RCTDVSSTIDSSLTMVMGDDMVKVIAWYD 163 (164) T ss_dssp TTCCSSEEEEGGGCEEETTTEEEEEEEEC T ss_pred CCCCCCEEEECCCCEEECCCEEEEEEEEC T ss_conf 89997548891207896897899999988 No 18 >>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} (A:173-339) Probab=22.38 E-value=59 Score=14.88 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=20.8 Q ss_pred CCCEEEEEEEECCCCCCCCCEEEEEEEC Q ss_conf 8882799992067877684102221215 Q gi|254780712|r 14 SRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116) Q Consensus 14 ~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116) +.|+=-|+-+.+..-.+|.++-.++||| T Consensus 139 ~~~~S~i~D~~~t~v~~~~~vKi~~WYD 166 (167) T 3hja_A 139 GNSHSSIVDGLETMVLENGFAKILSWYD 166 (167) T ss_dssp TCCCSEEEEGGGCEECSTTEEEEEEEEC T ss_pred CCCCHHEEECCCCEEECCCEEEEEEEEC T ss_conf 9984314871128896799899999988 No 19 >>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} (A:19-106) Probab=21.17 E-value=28 Score=16.85 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=20.2 Q ss_pred ECHHHHHHHHHCCCCCCHHHHHHHHHCCCC Q ss_conf 739999999841983568999999972986 Q gi|254780712|r 54 MNFERIQHWMSKGAQPTDRILFFLDKAGLI 83 (116) Q Consensus 54 l~~eRi~yWL~~GAqpS~~V~~LL~~~Gl~ 83 (116) ...|.|+.|+|+||.. =|.+.|...|.. T Consensus 21 ~~~e~vr~~VG~Ga~~--LieRaL~~~~~~ 48 (88) T 2hi0_A 21 FTVEDIKNFFGSGVVV--AVTRALAYEAGS 48 (88) T ss_dssp CCHHHHHHHCSSCHHH--HHHHHHHHHTTC T ss_pred CCHHHHHHHHCCCHHH--HHHHHHHHHCCH T ss_conf 9999999995775377--899998750330 No 20 >>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O (O:154-317) Probab=20.04 E-value=53 Score=15.16 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=17.1 Q ss_pred CCCEEEEEEEECCCCCCCCCEEEEEEEC Q ss_conf 8882799992067877684102221215 Q gi|254780712|r 14 SRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116) Q Consensus 14 ~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116) +.|+=-|+-+.+....+|.++-.++||| T Consensus 137 ~~~~Ssi~D~~~t~v~~~~~vKv~aWYD 164 (164) T 3e5r_O 137 GDSRSSIFDAKAGIALNDNFVKLVAWYD 164 (164) T ss_dssp TCCCSEEEETTTCEEEETTEEEEEEEEC T ss_pred CCCCCEEEECCCCEEECCCEEEEEEEEC T ss_conf 8996237981337897899999999988 Done!