Query gi|254780712|ref|YP_003065125.1| 30S ribosomal protein S16 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 116
No_of_seqs 112 out of 1084
Neff 5.9
Searched_HMMs 13730
Date Wed Jun 1 08:52:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780712.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uubp1 d.27.1.1 (P:1-83) Ribo 100.0 2.9E-37 2.1E-41 245.8 8.6 83 2-86 1-83 (83)
2 d3bn0a1 d.27.1.1 (A:2-102) Rib 100.0 5E-37 3.6E-41 244.3 3.4 81 2-86 1-81 (101)
3 d2gy9p1 d.27.1.1 (P:1-78) Ribo 100.0 1E-35 7.5E-40 236.3 7.1 77 2-79 1-77 (78)
4 d1vbva1 b.34.17.1 (A:3-97) Hyp 50.5 4.3 0.00031 19.4 2.3 17 9-26 42-58 (95)
5 d1dw0a_ a.3.1.1 (A:) SHP, an o 29.7 14 0.00099 16.4 2.1 32 29-67 58-89 (112)
6 d3cmco2 d.81.1.1 (O:149-312) G 27.9 14 0.001 16.3 1.9 28 14-41 136-163 (163)
7 d1gu2a_ a.3.1.1 (A:) Cytochrom 22.1 19 0.0014 15.5 1.7 33 28-67 64-96 (124)
8 d1wxxa1 b.122.1.9 (A:1-64) Hyp 17.1 33 0.0024 14.0 2.3 13 30-43 40-52 (64)
9 d1u8fo2 d.81.1.1 (O:152-315) G 16.0 30 0.0022 14.2 1.6 26 16-41 139-164 (164)
10 d1e44b_ b.101.1.1 (B:) Ribonuc 15.7 36 0.0026 13.8 1.9 16 27-45 65-80 (96)
No 1
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=2.9e-37 Score=245.76 Aligned_cols=83 Identities=46% Similarity=0.765 Sum_probs=79.0
Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG 81 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G 81 (116)
||+|||+|+||||+|||||||+|+|+||||+|||+||||||+. .+++.+.||.||++|||++|||||++|..||+++|
T Consensus 1 MvkIRL~R~G~k~~P~yrIVv~d~r~~rdGk~IE~lG~YnP~~--~~~~~i~l~~eRi~~Wl~~GAqpS~tV~~ll~~~g 78 (83)
T d2uubp1 1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRK--TTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAG 78 (83)
T ss_dssp CEEEEEEECSBTTBCCEEEEEEETTSCTTSCCSEEEEEECTTC--CSSCCEEECHHHHHHHHHHTCEECHHHHHHHHHTT
T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCC--CCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 9388121589989985899997668888995651365787998--98744887799999999977977899999999838
Q ss_pred CCCCC
Q ss_conf 86668
Q gi|254780712|r 82 LIKRS 86 (116)
Q Consensus 82 l~~~~ 86 (116)
+++.+
T Consensus 79 i~~~e 83 (83)
T d2uubp1 79 VFRQE 83 (83)
T ss_dssp SSCCC
T ss_pred CCCCC
T ss_conf 97689
No 2
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00 E-value=5e-37 Score=244.34 Aligned_cols=81 Identities=36% Similarity=0.654 Sum_probs=77.0
Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 30141230668788827999920678776841022212156787888644797399999998419835689999999729
Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAG 81 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~~G 81 (116)
+|+|||+|+||||+|||||||+|||+||||+|||+||||||+ +++.|.||.|||.|||++||||||+|.+||+.+|
T Consensus 1 AvkIRL~r~G~k~~p~yrIVv~d~r~~rdGk~iE~lG~ynP~----~~~~i~l~~eri~~Wl~~GAqpS~tV~~lL~~~g 76 (101)
T d3bn0a1 1 AVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPK----RKVLINVYPEKVKEWVLKGVELSHRAKAILWNHG 76 (101)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETT----TTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHTT
T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC----CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 928800018998998368998436888888445106578789----7311223589999999869983899999999859
Q ss_pred CCCCC
Q ss_conf 86668
Q gi|254780712|r 82 LIKRS 86 (116)
Q Consensus 82 l~~~~ 86 (116)
+++..
T Consensus 77 ~~~~~ 81 (101)
T d3bn0a1 77 ILKEV 81 (101)
T ss_dssp HHHHH
T ss_pred CCCCC
T ss_conf 86444
No 3
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1e-35 Score=236.35 Aligned_cols=77 Identities=38% Similarity=0.749 Sum_probs=73.7
Q ss_pred CCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 301412306687888279999206787768410222121567878886447973999999984198356899999997
Q gi|254780712|r 2 TLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDK 79 (116)
Q Consensus 2 ~vkIRL~r~G~k~rp~yrIVvadsr~~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GAqpS~~V~~LL~~ 79 (116)
||+|||+|+||||+|||||||+|+|++|||+|||+||||||++++ +++.+.||.||++|||++|||||++|..||++
T Consensus 1 MvkIRL~r~G~k~~P~YrIVv~d~r~~rdgk~iE~lG~YnP~~~~-~~~~i~l~~eri~~Wl~~GAqps~~V~~LLkk 77 (78)
T d2gy9p1 1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASE-KEEGTRLDLDRIAHWVGQGATISDRVAALIKE 77 (78)
T ss_dssp CEEEEEEECCBTTBCCEEEEEEETTSCTTSCCSEECCEECSSCCS-CSCCEECCHHHHHHHTTTTCEECHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCC-CCCCEEECHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 948831138998998479998666888888442012168786789-86446766999999999759678999999850
No 4
>d1vbva1 b.34.17.1 (A:3-97) Hypothetical protein YccV {Escherichia coli [TaxId: 562]}
Probab=50.49 E-value=4.3 Score=19.43 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=12.9
Q ss_pred HCCCCCCCEEEEEEEECC
Q ss_conf 066878882799992067
Q gi|254780712|r 9 CGGSKSRHHYRIVVANSR 26 (116)
Q Consensus 9 r~G~k~rp~yrIVvadsr 26 (116)
+.+ ++.|||+|.|.|+.
T Consensus 42 ~~~-r~QPfYhvLv~~~~ 58 (95)
T d1vbva1 42 DEL-RAAPWYHVVMEDDN 58 (95)
T ss_dssp -----CCCEEEEEEECSS
T ss_pred CCC-CCCCCEEEEEECCC
T ss_conf 787-78983799998698
No 5
>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=29.69 E-value=14 Score=16.38 Aligned_cols=32 Identities=38% Similarity=0.794 Sum_probs=25.0
Q ss_pred CCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCC
Q ss_conf 768410222121567878886447973999999984198
Q gi|254780712|r 29 RDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGA 67 (116)
Q Consensus 29 Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GA 67 (116)
+.||.|| |+.+.-||+++. |..+|..|+...+
T Consensus 58 ~TgK~I~------PlAps~np~Rft-D~akVEKWF~RNC 89 (112)
T d1dw0a_ 58 RTGKEIA------PLAPSATPDRFT-DSARVEKWLGRNC 89 (112)
T ss_dssp TTSCEEC------CSSTTTSTTTTC-CHHHHHHHHHHHH
T ss_pred CCCCCCC------CCCCCCCHHHHC-CHHHHHHHHHHHC
T ss_conf 6788756------668766866515-8999999997204
No 6
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=27.95 E-value=14 Score=16.33 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=17.7
Q ss_pred CCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 8882799992067877684102221215
Q gi|254780712|r 14 SRHHYRIVVANSRSPRDGKFIEKLGTWN 41 (116)
Q Consensus 14 ~rp~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116)
+.|+--|+-+.+..--+|.++-.++|||
T Consensus 136 g~~~SsI~D~~~t~v~~~~~vKv~aWYD 163 (163)
T d3cmco2 136 GSTVSSTIDALSTMVIDGKMVKVVSWYD 163 (163)
T ss_dssp TCCSSEEEEGGGCEEETTTEEEEEEEEC
T ss_pred CCCCCEEEECCCCEEECCCEEEEEEEEC
T ss_conf 9986388880218898898899999709
No 7
>d1gu2a_ a.3.1.1 (A:) Cytochrome c'' {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
Probab=22.10 E-value=19 Score=15.48 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=25.0
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCC
Q ss_conf 7768410222121567878886447973999999984198
Q gi|254780712|r 28 PRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGA 67 (116)
Q Consensus 28 ~Rdgk~iE~lG~YnP~~~k~~~~~i~l~~eRi~yWL~~GA 67 (116)
.+.||.|| |+.+.-||+++. |..+|..|+...+
T Consensus 64 ~~TgK~I~------PlAps~np~Rft-D~akvEKWf~RNC 96 (124)
T d1gu2a_ 64 IVTGKEIP------PLAPRVNTKRFT-DIDKVEDEFTKHC 96 (124)
T ss_dssp TTTCCEEC------CSCTTTSTTTTT-CHHHHHHHHHHHH
T ss_pred CCCCCCCC------CCCCCCCHHHHC-CHHHHHHHHHHHC
T ss_conf 65788556------668766866515-8999999997204
No 8
>d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=17.12 E-value=33 Score=14.04 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=10.3
Q ss_pred CCCCEEEEEEECCC
Q ss_conf 68410222121567
Q gi|254780712|r 30 DGKFIEKLGTWNPT 43 (116)
Q Consensus 30 dgk~iE~lG~YnP~ 43 (116)
+|+|| -.|+|||.
T Consensus 40 ~~~~l-g~g~~np~ 52 (64)
T d1wxxa1 40 GRRFL-ALALYNPH 52 (64)
T ss_dssp TTEEE-EEEEECTT
T ss_pred CCCEE-EEEEECCC
T ss_conf 99689-99998999
No 9
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}
Probab=15.96 E-value=30 Score=14.24 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=12.6
Q ss_pred CEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 82799992067877684102221215
Q gi|254780712|r 16 HHYRIVVANSRSPRDGKFIEKLGTWN 41 (116)
Q Consensus 16 p~yrIVvadsr~~Rdgk~iE~lG~Yn 41 (116)
|+=-||-+.+..--+|.++-.++|||
T Consensus 139 ~~S~IvD~~~T~v~~~~~vKv~aWYD 164 (164)
T d1u8fo2 139 THSSTFDAGAGIALNDHFVKLISWYD 164 (164)
T ss_dssp CCSEEEETTTCEEEETTEEEEEEEEC
T ss_pred CCCEEEECCCCEEECCCEEEEEEECC
T ss_conf 86289985679898899899999709
No 10
>d1e44b_ b.101.1.1 (B:) Ribonuclease domain of colicin E3 {Escherichia coli [TaxId: 562]}
Probab=15.71 E-value=36 Score=13.82 Aligned_cols=16 Identities=31% Similarity=0.754 Sum_probs=12.1
Q ss_pred CCCCCCCEEEEEEECCCCC
Q ss_conf 8776841022212156787
Q gi|254780712|r 27 SPRDGKFIEKLGTWNPTLP 45 (116)
Q Consensus 27 ~~Rdgk~iE~lG~YnP~~~ 45 (116)
.++|| +.||.|||.+.
T Consensus 65 ~~~dG---~HLGafDp~TG 80 (96)
T d1e44b_ 65 RASDG---QHLGSFDPKTG 80 (96)
T ss_dssp ETTTC---BEEEEECTTTC
T ss_pred CCCCC---CCCCCCCCCCC
T ss_conf 27786---30244477640
Done!