RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780712|ref|YP_003065125.1| 30S ribosomal protein S16
[Candidatus Liberibacter asiaticus str. psy62]
(116 letters)
>gnl|CDD|178814 PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.
Length = 75
Score = 115 bits (292), Expect = 2e-27
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
+KIRLA GG+K R YRIVVA+SRSPRDG+FIE++G +NP L K ++ ER+ +W
Sbjct: 2 VKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERVGFYNP-LAKPAEEEVKLDEERVLYW 60
Query: 63 MSKGAQPTDRILFFL 77
+ +GAQPTD + L
Sbjct: 61 LGQGAQPTDTVRRLL 75
>gnl|CDD|129114 TIGR00002, S16, ribosomal protein S16. This model describes
ribosomal S16 of bacteria and organelles.
Length = 78
Score = 106 bits (268), Expect = 1e-24
Identities = 44/81 (54%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
+KIRL GG K R YRIVVA+SRS RDG++IE+LG +N P R +N ERI++W
Sbjct: 1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYN---PLTKESRVKLNVERIKYW 57
Query: 63 MSKGAQPTDRILFFLDKAGLI 83
+SKGAQPTD + L KAG+
Sbjct: 58 LSKGAQPTDTVRNLLKKAGVF 78
>gnl|CDD|184725 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 88.3 bits (219), Expect = 4e-19
Identities = 38/71 (53%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
M +KIRL G K + Y IV A+SR+PRDGKFIEK+GT+NP NP +NF+R
Sbjct: 1 MAVKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPN---TNPATVDLNFDRAV 57
Query: 61 HWMSKGAQPTD 71
+W+ GAQPTD
Sbjct: 58 YWLMNGAQPTD 68
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 81.7 bits (202), Expect = 3e-17
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
M +KI+L G YRIVVA+SR+ RDG+ IE++G ++ PKE P ++ ER Q
Sbjct: 1 MAVKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYH---PKEEPSLIEIDSERAQ 57
Query: 61 HWMSKGAQPTDRILFFLDKAG 81
+W+S GAQPT+ +L L G
Sbjct: 58 YWLSVGAQPTEPVLALLKITG 78
>gnl|CDD|172991 PRK14525, rpsP, 30S ribosomal protein S16; Provisional.
Length = 88
Score = 67.7 bits (165), Expect = 6e-13
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
M + +RL+ G+ Y +V +SR+ RDGK++E +G ++PT + P R + ERI+
Sbjct: 1 MAVVLRLSRAGTHKAPFYHVVATDSRNARDGKYLEDVGIYDPT---KRPERIELKVERIE 57
Query: 61 HWMSKGAQPTDRILFFLDKAGLIKRSP 87
HW+ GA+P+ + L +A
Sbjct: 58 HWLKAGAKPSQTVAMILKRAAKAAAPA 84
>gnl|CDD|172989 PRK14523, rpsP, 30S ribosomal protein S16; Provisional.
Length = 137
Score = 67.6 bits (164), Expect = 6e-13
Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 5/106 (4%)
Query: 5 IRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMS 64
IRLA GGSK Y IVVA+ R PRDG+FIE++G +NP + + +R + ERI HW++
Sbjct: 4 IRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNP-MARGQDIRLQLEKERISHWLN 62
Query: 65 KGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKNA 110
+GAQ + R+ + K +++SP+ +K +K +RL +++ A
Sbjct: 63 QGAQTSLRVKHLIKK---LEKSPE-EAQKGGMRKGEFKRLQAEQAA 104
>gnl|CDD|172990 PRK14524, rpsP, 30S ribosomal protein S16; Provisional.
Length = 94
Score = 66.0 bits (161), Expect = 2e-12
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
++IRL G + + YRIVV +SR RDG +IE LG +NP + P ++ ER W
Sbjct: 2 VRIRLTRMGKRKQPFYRIVVVDSRKRRDGAYIESLGYYNPL---KEPYEIKVDVERAVEW 58
Query: 63 MSKGAQPTDRILFFLDKAGLIKR 85
+ KGAQP+D + L K G++K+
Sbjct: 59 ILKGAQPSDTVRDILRKFGVMKK 81
>gnl|CDD|172988 PRK14522, rpsP, 30S ribosomal protein S16; Provisional.
Length = 116
Score = 59.2 bits (143), Expect = 2e-10
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
M LKIRL G ++ YR+V+A+ SPRDGK+IE LG ++P + + + ERI
Sbjct: 1 MALKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDP----HSEQNYQLKSERIF 56
Query: 61 HWMSKGAQPTDR 72
+W+++GA+ T++
Sbjct: 57 YWLNQGAELTEK 68
>gnl|CDD|177513 PHA03065, PHA03065, Hypothetical protein; Provisional.
Length = 438
Score = 26.1 bits (58), Expect = 2.1
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 56 FERIQHWMSKGAQPTDRILFFLDKAGLI----------KRSPQNNPKKSQPKKKALERLA 105
E +Q W+ K ++ F+D+ G I +++ +N K+ + + + LE
Sbjct: 56 EEYVQQWVKK----AGKVTLFVDR-GSIPIKQSLREKRRKASKNTIKRKREEIEKLEDDI 110
Query: 106 SKKNAD 111
+ D
Sbjct: 111 KNLDVD 116
>gnl|CDD|185047 PRK15091, PRK15091, ABC transporter outer membrane lipoprotein;
Provisional.
Length = 251
Score = 25.8 bits (57), Expect = 2.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 31 GKFIEKLGTWNPTLPKENPLRF 52
G I+ G NP L KE P RF
Sbjct: 112 GGLIDVAGMANPKLAKEEPHRF 133
>gnl|CDD|180144 PRK05580, PRK05580, primosome assembly protein PriA; Validated.
Length = 679
Score = 24.4 bits (54), Expect = 6.3
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 13 KSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPK 46
R+ Y++++ +SP + L W L K
Sbjct: 631 AGRYRYQLLL---KSPSRADLQKLLRAWLALLQK 661
>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus
type. This model represents tyrosine decarboxylases in
the family of the Enterococcus faecalis enzyme Tdc.
These enzymes often are encoded next to
tyrosine/tyramine antiporter, together comprising a
system in which tyrosine decarboxylation can protect
against exposure to acid conditions. This clade differs
from the archaeal tyrosine decarboxylases associated
with methanofuran biosynthesis.
Length = 608
Score = 24.4 bits (53), Expect = 6.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 25 SRSPRDGKFIEKLGTW 40
+ S R GK ++KLG W
Sbjct: 210 AHSARSGKDLQKLGKW 225
>gnl|CDD|130153 TIGR01081, mpl,
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
diaminopimelate ligase. Alternate name: murein
tripeptide ligase.
Length = 448
Score = 24.4 bits (53), Expect = 7.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 49 PLRFTMNFERIQHWMSKGAQPTDRIL 74
P + +F+ + K AQP D IL
Sbjct: 404 PANVSADFDAFVAMIVKNAQPGDHIL 429
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 24.3 bits (53), Expect = 7.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 2 TLKIRLACGGSKSRHHYRIVVANSRSPR 29
TL +RL GG + R ++A SP
Sbjct: 218 TLIVRLNDGGERVVAFDRCLIATGASPA 245
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.131 0.396
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,901,639
Number of extensions: 108187
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 21
Length of query: 116
Length of database: 5,994,473
Length adjustment: 81
Effective length of query: 35
Effective length of database: 4,244,225
Effective search space: 148547875
Effective search space used: 148547875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)