HHsearch alignment for GI: 254780713 and conserved domain: COG1873
>COG1873 Protein implicated in RNA metabolism, contains PRC-barrel domain [General function prediction only].
Probab=96.41 E-value=0.014 Score=34.44 Aligned_cols=64 Identities=25% Similarity=0.365 Sum_probs=42.6
Q ss_pred CCCCHHHHHCCEEEEECCCEEEEEEEEE-ECCCC--EEEEEECC--------CCCEEEEECHHHHCCEEECCCCEEEEEC
Q ss_conf 0021452401136752584311998866-57995--08999749--------9828998750310010563397999952
Q gi|254780713|r 96 DEFFNTDLEEMETFDRQGKYWGQVCGVY-NFGAG--SILEIKNT--------MEKTFLIPFTKFAVLEVNLQENKILIDP 164 (190)
Q Consensus 96 ~e~Y~~dLiG~~V~d~~~~~iG~V~~v~-~~~a~--dil~V~~~--------~~ke~lIP~v~~~I~~ID~~~k~I~v~~ 164 (190)
T Consensus 4 ~~~~~s~l~gk~V~~~~G~~vG~V~dv~ld~~~g~i~~l~v~~~~~~l~~~~k~~~v~IP~--~~V~aI---Gd~III~~ 78 (87)
T COG1873 4 EMMRLSELLGKEVITNDGKYVGTVSDVVLDIKEGKITGLLVIPTNKGLFLFGKGKEVIVPY--EYVKAI---GDIIIIKD 78 (87)
T ss_pred HHHEHHHHCCCEEECCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEH--HHEEEE---CCEEEEEC
T ss_conf 1214877429689847884999997389984689389999956885200057796899754--575785---57999945