>TIGR02273 16S_RimM 16S rRNA processing protein RimM; InterPro: IPR011961 This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterised in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. This entry represents the full-length model. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide .; GO: 0043022 ribosome binding, 0006364 rRNA processing, 0005840 ribosome.

Probab=100.00 E-value=0 Score=306.16 Aligned_cols=160 Identities=30% Similarity=0.552 Sum_probs=146.1 Q ss_pred EEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEE---CC----CC--EEEEEEEEEEECCEEEEEECCCCCHHHHHHHC Q ss_conf 79999994463050599999418997787630102---07----98--37999999973997999963877845567634 Q gi|254780713|r 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---SN----DN--RELRILKMYRKNKRFIATFSGIDNIHSASELR 77 (190) Q Consensus 7 ~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~---~~----~~--~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~ 77 (190) T Consensus 1 ~~~~G~i~~~hG~~GevKv~~~Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fegi~~r~~Ae~L~ 80 (179) T TIGR02273 1 LLVVGKIGGAHGIRGEVKVKSFTDFPESIFDYGPWLILKDSKSSQWKLVEVKVASVRKQKNKLIVKFEGIDDREAAEALK 80 (179) T ss_pred CEEEEEEECCEECCEEEEEEECCCCHHHHCCCCCEEEEECCCCCCEEEEEEEEEEEEECCCEEEEEECCCCCHHHHHHHC T ss_conf 97879993673200169998707985885388618999589887137999999999832885899966989979998636 Q ss_pred CCEEEECHHHCCCCCCC---CCCCCHHHHHCCEEE--EECCCEEEEEEEEEECCCCEEEEEEC----CCCCEEEEECHH- Q ss_conf 96877417778865564---100214524011367--52584311998866579950899974----998289987503- Q gi|254780713|r 78 DLKLYAKRQDFKDEELE---EDEFFNTDLEEMETF--DRQGKYWGQVCGVYNFGAGSILEIKN----TMEKTFLIPFTK- 147 (190) Q Consensus 78 g~~i~i~~~~lp~~~l~---~~e~Y~~dLiG~~V~--d~~~~~iG~V~~v~~~~a~dil~V~~----~~~ke~lIP~v~- 147 (190) T Consensus 81 g~~l~v~~~~lp--~l~~lkedEyY~~DLiGl~V~d~~~~G~~LG~V~~~~~tganDvlvv~~~~~~~~~~~~LiPf~~~ 158 (179) T TIGR02273 81 GLELFVPREALP--ELEKLKEDEYYWTDLIGLEVVDVTTEGEELGKVVEILETGANDVLVVRSNVGKKGKKEVLIPFVEK 158 (179) T ss_pred CCEEEEEHHHCC--CCCCCCCCCEEEEEEECCEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCC T ss_conf 948989488848--755788975264303277898701589455689872555996599997478986771698655899 Q ss_pred HHCCEEECCCCEEEEECCCCC Q ss_conf 100105633979999528100 Q gi|254780713|r 148 FAVLEVNLQENKILIDPIAAG 168 (190) Q Consensus 148 ~~I~~ID~~~k~I~v~~p~Gl 168 (190) T Consensus 159 ~~v~~id~~~k~i~v~~~~~~ 179 (179) T TIGR02273 159 EIVKEIDLEKKIITVDWPEGL 179 (179) T ss_pred CEEEEEECCCCEEEEEECCCC T ss_conf 557765734778989617779

HHsearch alignment for GI: 254780713 and conserved domain: TIGR02273