HHsearch alignment for GI: 254780713 and conserved domain: pfam01782
>pfam01782 RimM RimM N-terminal domain. The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.
Probab=99.76 E-value=2.4e-18 Score=123.07 Aligned_cols=79 Identities=30% Similarity=0.529 Sum_probs=69.3
Q ss_pred EEEEEECCCEEEEEEEEEECCCCHHHHHHCCEE---CC--CCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEE
Q ss_conf 999994463050599999418997787630102---07--9837999999973997999963877845567634968774
Q gi|254780713|r 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---SN--DNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYA 83 (190)
Q Consensus 9 ~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~---~~--~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i~i 83 (190)
T Consensus 1 ~iG~I~~~hGlkG~vki~~~td~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~gi~~re~A~~l~g~~i~i 80 (84)
T pfam01782 1 LVGKIVGTHGLKGEVKVKSFTDFPEAIFDYGPWFLLKKKGEWKPLTVESVRLHKKGLIVKFEGVDDRDAAEALKGAELYV 80 (84)
T ss_pred CEEEECCCCCCCEEEEEEECCCCHHHHCCCCCEEEECCCCCEEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEE
T ss_conf 98998775221288999975799899608671999869995788999999997999999977989989999737999999
Q ss_pred CHHH
Q ss_conf 1777
Q gi|254780713|r 84 KRQD 87 (190)
Q Consensus 84 ~~~~ 87 (190)
T Consensus 81 ~r~~ 84 (84)
T pfam01782 81 PRSD 84 (84)
T ss_pred ECCC
T ss_conf 7899