HHsearch alignment for GI: 254780713 and conserved domain: pfam01782

>pfam01782 RimM RimM N-terminal domain. The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.
Probab=99.76  E-value=2.4e-18  Score=123.07  Aligned_cols=79  Identities=30%  Similarity=0.529  Sum_probs=69.3

Q ss_pred             EEEEEECCCEEEEEEEEEECCCCHHHHHHCCEE---CC--CCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEE
Q ss_conf             999994463050599999418997787630102---07--9837999999973997999963877845567634968774
Q gi|254780713|r    9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---SN--DNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYA   83 (190)
Q Consensus         9 ~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~---~~--~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i~i   83 (190)
T Consensus         1 ~iG~I~~~hGlkG~vki~~~td~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~gi~~re~A~~l~g~~i~i   80 (84)
T pfam01782         1 LVGKIVGTHGLKGEVKVKSFTDFPEAIFDYGPWFLLKKKGEWKPLTVESVRLHKKGLIVKFEGVDDRDAAEALKGAELYV   80 (84)
T ss_pred             CEEEECCCCCCCEEEEEEECCCCHHHHCCCCCEEEECCCCCEEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEE
T ss_conf             98998775221288999975799899608671999869995788999999997999999977989989999737999999


Q ss_pred             CHHH
Q ss_conf             1777
Q gi|254780713|r   84 KRQD   87 (190)
Q Consensus        84 ~~~~   87 (190)
T Consensus        81 ~r~~   84 (84)
T pfam01782        81 PRSD   84 (84)
T ss_pred             ECCC
T ss_conf             7899