HHsearch alignment for GI: 254780713 and conserved domain: pfam05239
>pfam05239 PRC PRC-barrel domain. The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.
Probab=98.91 E-value=3.7e-09 Score=71.43 Aligned_cols=70 Identities=37% Similarity=0.643 Sum_probs=60.8
Q ss_pred CCCCHHHHHCCEEEEECCCEEEEEEEE-EECCCCEEEEEECCCC-----CEEEEECHHHHCCEEECCCCEEEEECCCCC
Q ss_conf 002145240113675258431199886-6579950899974998-----289987503100105633979999528100
Q gi|254780713|r 96 DEFFNTDLEEMETFDRQGKYWGQVCGV-YNFGAGSILEIKNTME-----KTFLIPFTKFAVLEVNLQENKILIDPIAAG 168 (190)
Q Consensus 96 ~e~Y~~dLiG~~V~d~~~~~iG~V~~v-~~~~a~dil~V~~~~~-----ke~lIP~v~~~I~~ID~~~k~I~v~~p~Gl 168 (190)
T Consensus 2 ~~~~~~~l~G~~V~~~~G~~lG~V~Dv~id~~~g~i~~i~~~~g~~~~~~~~~vP~~~---~~~~~~~~~i~v~~~~~~ 77 (77)
T pfam05239 2 DEFYASDLIGLEVYTEDGEKLGKVKDVVIDEGEGDVLYLVVSVGGFLGDKEVLIPFTK---LEVDLGKDRIIVDAPKEL 77 (77)
T ss_pred CCEEEEEEECCEEECCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCC---CEEECCCCEEEECCCCCC
T ss_conf 8279789748887999999998999999978999599999876887788249951116---669876999997999999