Query gi|254780713|ref|YP_003065126.1| 16S rRNA-processing protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 190
No_of_seqs 117 out of 1571
Neff 6.9
Searched_HMMs 33803
Date Wed Jun 1 14:33:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780713.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3h9n_A Ribosome maturation fa 99.9 2.2E-23 6.6E-28 151.1 9.7 78 97-174 1-84 (84)
2 >2f1l_A 16S rRNA processing pr 99.9 4.9E-23 1.5E-27 149.1 9.9 94 1-96 14-111 (111)
3 >2qgg_A 16S rRNA-processing pr 99.9 4E-23 1.2E-27 149.7 8.7 94 1-96 5-102 (102)
4 >2f1l_A 16S rRNA processing pr 99.9 1.2E-22 3.6E-27 146.9 8.4 72 97-168 1-76 (76)
5 >2qgg_A 16S rRNA-processing pr 99.9 2.1E-22 6.3E-27 145.6 8.2 72 97-168 1-80 (80)
6 >3h9n_A Ribosome maturation fa 99.9 1E-21 3.1E-26 141.7 7.6 89 6-96 1-93 (93)
7 >2dyi_A Probable 16S rRNA-proc 99.8 1.3E-20 3.8E-25 135.5 9.3 86 6-96 2-87 (87)
8 >2dyi_A Probable 16S rRNA-proc 99.8 2.1E-20 6.1E-25 134.4 6.9 70 97-170 1-75 (75)
9 >1rzh_H Reaction center protei 96.8 0.002 5.8E-08 38.8 5.1 67 100-171 30-100 (145)
10 >1pm3_A MTH1895; unknown funct 96.0 0.036 1.1E-06 31.7 7.6 57 95-153 19-86 (97)
11 >1eys_H Photosynthetic reactio 96.0 0.019 5.6E-07 33.3 6.1 70 99-170 30-103 (142)
12 >2wjn_H Reaction center protei 95.6 0.02 5.8E-07 33.2 4.7 68 99-170 36-107 (146)
13 >3htr_A Uncharacterized PRC-ba 95.5 0.054 1.6E-06 30.7 6.8 66 103-171 1-74 (101)
14 >1sqr_A 50S ribosomal protein 82.4 1.5 4.5E-05 22.6 3.6 27 57-83 19-45 (95)
15 >2ey4_C Small nucleolar RNP si 69.2 7.3 0.00022 18.8 4.1 36 103-138 32-67 (82)
16 >2hvy_B GAR1, small nucleolar 59.1 12 0.00036 17.5 4.5 35 104-138 33-67 (104)
17 >2eqn_A Hypothetical protein L 51.3 17 0.00049 16.7 4.1 34 104-137 52-85 (103)
18 >2oqe_A Peroxisomal copper ami 37.9 25 0.00075 15.7 2.6 52 65-126 41-93 (99)
19 >2zy9_A Mg2+ transporter MGTE; 30.2 27 0.00081 15.5 1.7 25 97-121 18-42 (68)
20 >3icy_A Sensor protein; sensor 30.0 32 0.00094 15.2 2.0 33 92-124 43-75 (77)
21 >3ddj_A CBS domain-containing 25.4 40 0.0012 14.6 1.9 23 98-120 28-50 (51)
22 >1u6z_A Exopolyphosphatase; al 24.0 42 0.0012 14.5 1.8 23 152-174 8-30 (62)
23 >1y79_1 Peptidyl-dipeptidase D 22.4 40 0.0012 14.6 1.4 34 93-126 7-41 (77)
24 >2ef7_A Hypothetical protein S 21.5 53 0.0016 13.9 1.9 24 98-121 16-39 (56)
25 >2oqk_A Putative translation i 21.3 55 0.0016 13.8 4.7 55 110-167 29-84 (117)
26 >1pvm_A Conserved hypothetical 21.1 54 0.0016 13.9 1.9 25 98-122 42-66 (92)
27 >2b78_A Hypothetical protein S 21.1 55 0.0016 13.8 2.6 43 69-119 7-49 (67)
28 >2yvy_A MGTE, Mg2+ transporter 20.2 55 0.0016 13.8 1.7 24 98-121 22-45 (75)
No 1
>>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae} (A:94-177)
Probab=99.90 E-value=2.2e-23 Score=151.06 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=72.6
Q ss_pred CCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEEC-----CCCCEEEEECHH-HHCCEEECCCCEEEEECCCCCCC
Q ss_conf 021452401136752584311998866579950899974-----998289987503-10010563397999952810038
Q gi|254780713|r 97 EFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKN-----TMEKTFLIPFTK-FAVLEVNLQENKILIDPIAAGLN 170 (190)
Q Consensus 97 e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~-----~~~ke~lIP~v~-~~I~~ID~~~k~I~v~~p~Glld 170 (190)
||||+||+||+|++.+|+.+|+|.+|+++||||+|+|++ .++|++||||++ .||++||.++|+|.|+||+||||
T Consensus 1 Efy~~dLiG~~V~d~~g~~iG~V~~v~~~~a~dll~I~~~~~~~~~gke~liPfv~e~~V~~iD~e~~~I~v~~p~Glld 80 (84)
T 3h9n_A 1 DYYWHDLIGCTVVNLEGYTXGTVTEXXETGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAGFLE 80 (84)
T ss_dssp CGGGGGTTTCEEEETTCCEEEEEEEEEESSSCEEEEEECCTTCTTCCSEEEEECCBTTTEEEEEGGGTEEEECCCSSTTC
T ss_pred CEEHHHHEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCEEEECCCCEEEEECCCCHHH
T ss_conf 20221010008997079624799398106992599998288667798289974376467517967899999988812644
Q ss_pred CCCC
Q ss_conf 8865
Q gi|254780713|r 171 NTTM 174 (190)
Q Consensus 171 ~~~~ 174 (190)
++.+
T Consensus 81 ~~~e 84 (84)
T 3h9n_A 81 HHHH 84 (84)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 4489
No 2
>>2f1l_A 16S rRNA processing protein; 9949912, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: UNL; 2.46A {Pseudomonas aeruginosa} (A:1-111)
Probab=99.89 E-value=4.9e-23 Score=149.12 Aligned_cols=94 Identities=22% Similarity=0.367 Sum_probs=83.2
Q ss_pred CCCCCCEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEE--CC--CCEEEEEEEEEEECCEEEEEECCCCCHHHHHHH
Q ss_conf 99820079999994463050599999418997787630102--07--983799999997399799996387784556763
Q gi|254780713|r 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SN--DNRELRILKMYRKNKRFIATFSGIDNIHSASEL 76 (190)
Q Consensus 1 M~k~~~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~--~~--~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l 76 (190)
|..|++|+.||+|++|||||||+|++++|+.++.+..+..+ .. ...++.++.++.+++.++++|+||+||++|++|
T Consensus 14 ~~~~~~~i~iGkI~~~hGlkG~vkv~~~td~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~lvkf~gi~~~e~Ae~L 93 (111)
T 2f1l_A 14 PTPADDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTF 93 (111)
T ss_dssp -----CEEEEEEEEEEETTTTEEEEEECSSSGGGGGGCCEEEEEETTEEEEEEEEEEEEETTEEEEEETTCCSHHHHHTT
T ss_pred CCCCCCEEEEEEEECCEEECEEEEEEECCCCHHHHHCCCEEEEECCCCEEEEEEEEEEECCCEEEEEECCCCCHHHHHHH
T ss_conf 87978889999992989436699999987997996187748994499168899998871386899996256876688863
Q ss_pred CCCEEEECHHHCCCCCCCCC
Q ss_conf 49687741777886556410
Q gi|254780713|r 77 RDLKLYAKRQDFKDEELEED 96 (190)
Q Consensus 77 ~g~~i~i~~~~lp~~~l~~~ 96 (190)
+|+.||+++++|| +|++|
T Consensus 94 ~g~~i~v~~~~lp--~l~eG 111 (111)
T 2f1l_A 94 TGYEICIPRSELP--SLEEG 111 (111)
T ss_dssp TTCEEEEEGGGSC--C----
T ss_pred CCCEEECCHHHCC--CCCCC
T ss_conf 1976544653487--63221
No 3
>>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus} (A:1-102)
Probab=99.89 E-value=4e-23 Score=149.65 Aligned_cols=94 Identities=12% Similarity=0.262 Sum_probs=83.7
Q ss_pred CCCCCCEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEE----CCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHH
Q ss_conf 99820079999994463050599999418997787630102----07983799999997399799996387784556763
Q gi|254780713|r 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDNIHSASEL 76 (190)
Q Consensus 1 M~k~~~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l 76 (190)
|.+.++|+.||+|++|||+|||+||+++|+.++.+.++..+ .....++.++.++.+++.++++|+||+||++|++|
T Consensus 5 m~~~~~~i~iGkI~~~hGlkG~vkv~~~td~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~ivkf~gi~~re~Ae~l 84 (102)
T 2qgg_A 5 QNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPXSNXFDYLPWYIETKAGWQTVDVKRWKPHGKGLVVSLKGVSDRTGAESL 84 (102)
T ss_dssp -CCCSSEEEEEEEEEEETTTTEEEEEECSSSGGGGGGSSSEEEEETTEEEEECEEEEEEETTEEEEEETTCCSHHHHHTT
T ss_pred CCCCCCEEEEEEEECCEEECEEEEEEECCCCHHHHHCCCEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHH
T ss_conf 68986669999990989426699999988897996087729986389807999999741475799997167856677753
Q ss_pred CCCEEEECHHHCCCCCCCCC
Q ss_conf 49687741777886556410
Q gi|254780713|r 77 RDLKLYAKRQDFKDEELEED 96 (190)
Q Consensus 77 ~g~~i~i~~~~lp~~~l~~~ 96 (190)
+|+.||+++++|| +|++|
T Consensus 85 ~g~~i~i~~~~lp--~l~eD 102 (102)
T 2qgg_A 85 VASNIWIAKSQLP--KADVD 102 (102)
T ss_dssp TTCEEEEETTCCC--CCHHH
T ss_pred CCCEEEEEHHHCC--CCCCC
T ss_conf 1858997444515--55334
No 4
>>2f1l_A 16S rRNA processing protein; 9949912, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: UNL; 2.46A {Pseudomonas aeruginosa} (A:112-187)
Probab=99.88 E-value=1.2e-22 Score=146.93 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=69.1
Q ss_pred CCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECC----CCCEEEEECHHHHCCEEECCCCEEEEECCCCC
Q ss_conf 0214524011367525843119988665799508999749----98289987503100105633979999528100
Q gi|254780713|r 97 EFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168 (190)
Q Consensus 97 e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~----~~ke~lIP~v~~~I~~ID~~~k~I~v~~p~Gl 168 (190)
||||+|||||+|+|.+|+.+|+|.+|+++||||+|+|+++ ++|++||||+++||++||.++++|+|+||+||
T Consensus 1 Efy~~dLiG~~V~~~~g~~lG~V~~v~~~~a~dil~I~~~~~~~~~ke~liP~~~~fV~~VD~~~~~I~v~~p~G~ 76 (76)
T 2f1l_A 1 EYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVXVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEXRVDWDADF 76 (76)
T ss_dssp -CCHHHHTTCEEEETTSCEEEEEEEEECCSSSCEEEEECCTTSSSSCCEEEECSTTTEEEEETTTTEEEECCCTTC
T ss_pred HHHHHHHCCEEEEEECCCEEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEECCHHHCCEEECCCCEEEEECCCCC
T ss_conf 0003654780899807945899969954899409999716788898199998564305879778999999589999
No 5
>>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus} (A:103-182)
Probab=99.87 E-value=2.1e-22 Score=145.56 Aligned_cols=72 Identities=22% Similarity=0.372 Sum_probs=68.2
Q ss_pred CCCHHHHHCCEEEE----ECCCEEEEEEEEEECCCCEEEEEECC----CCCEEEEECHHHHCCEEECCCCEEEEECCCCC
Q ss_conf 02145240113675----25843119988665799508999749----98289987503100105633979999528100
Q gi|254780713|r 97 EFFNTDLEEMETFD----RQGKYWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168 (190)
Q Consensus 97 e~Y~~dLiG~~V~d----~~~~~iG~V~~v~~~~a~dil~V~~~----~~ke~lIP~v~~~I~~ID~~~k~I~v~~p~Gl 168 (190)
||||+|||||+|+| .+|+.+|+|.+|+++||||+|+|+++ ++|++||||+++||.+||.++|+|.|+||+||
T Consensus 1 EfY~~dLiG~~V~d~~~~e~g~~lG~V~~v~~~ga~dvl~I~~~~~~~~gk~~LIPfv~~~V~~VD~~~~~I~v~~peG~ 80 (80)
T 2qgg_A 1 EYYWSDLKGLTVLGLDDEEQEVNLGQIHELFETGANDVXVVRATPDSIDSEERXIPWHKDVVQRVDLEAGRIYVNWGVDY 80 (80)
T ss_dssp HCCHHHHTTCEEEEECTTSCEEEEEEEEEEEECSSCEEEEEECCSSSSSSCCEEEECCTTTEEEEETTTTEEEESCCCC-
T ss_pred CEEHHHHEEEEEEECCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCHHCCCEEECCCCEEEEECCCCC
T ss_conf 24434301028996236647739999988842799429999705768899599998654303879778999999189999
No 6
>>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae} (A:1-93)
Probab=99.85 E-value=1e-21 Score=141.68 Aligned_cols=89 Identities=20% Similarity=0.344 Sum_probs=79.5
Q ss_pred CEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEE----CCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEE
Q ss_conf 079999994463050599999418997787630102----0798379999999739979999638778455676349687
Q gi|254780713|r 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKL 81 (190)
Q Consensus 6 ~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i 81 (190)
||+.+|+|++|||+|||+|++|+|++|+.+.++..+ .....++.+++++.+++.++++|++|+||++|++|+|+.+
T Consensus 1 d~i~iG~I~~~hGikG~vkv~~~td~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~i~kf~~i~~~~~A~~l~g~~i 80 (93)
T 3h9n_A 1 HIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKLKGVDDREAAQILANVEI 80 (93)
T ss_dssp CEEEEEEEEEECSSSSCEEEEECSSSSGGGGGCCSEEEEETTEEEEECEEEEEESSSCEEEEESSCCSHHHHHTTTTCEE
T ss_pred CEEEEEEEECCEEECEEEEEEECCCCHHHHHCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHEE
T ss_conf 95999999099951669999997899899727883786037983166789999809879999648897668988654210
Q ss_pred EECHHHCCCCCCCCC
Q ss_conf 741777886556410
Q gi|254780713|r 82 YAKRQDFKDEELEED 96 (190)
Q Consensus 82 ~i~~~~lp~~~l~~~ 96 (190)
|+++++|| +|++|
T Consensus 81 ~i~~~~lp--~l~eG 93 (93)
T 3h9n_A 81 GVDLSVFP--ELEEG 93 (93)
T ss_dssp EEECCCCC--CCSSS
T ss_pred EHHHHCCC--CCCCC
T ss_conf 00022044--54345
No 7
>>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, structural genomics, NPPSFA; 2.00A {Thermus thermophilus HB8} PDB: 2dog_A (A:1-87)
Probab=99.84 E-value=1.3e-20 Score=135.55 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=77.2
Q ss_pred CEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEECCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEECH
Q ss_conf 07999999446305059999941899778763010207983799999997399799996387784556763496877417
Q gi|254780713|r 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKR 85 (190)
Q Consensus 6 ~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i~i~~ 85 (190)
+|+.+|+|++|||+|||+|+.|+||.++. ...+....++++|++++.+++.++++|+||+||++|++|+|+.+|+++
T Consensus 2 d~i~iG~I~~~hGikG~lkv~~~td~~~~---~~~~~~~~~~~~i~~~~~~~~~~iikf~gi~~~e~Ae~l~g~~l~i~~ 78 (87)
T 2dyi_A 2 RLVEIGRFGAPYALKGGLRFRGEPVVLHL---ERVYVEGHGWRAIEDLYRVGEELVVHLAGVTDRTLAEALVGLRVYAEV 78 (87)
T ss_dssp CEEEEEEEEEECSSSSCEEEEECGGGGGC---SEEEETTTEEEEEEEEEEETTEEEEEETTCCSHHHHHTTTTCEEEEEG
T ss_pred EEEEEEEEECCEEEEEEEEEECCHHHCCC---CCEEEECCCEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEEEE
T ss_conf 29999999399966349999867664666---516996996699999999899799998578977898863697899730
Q ss_pred HHCCCCCCCCC
Q ss_conf 77886556410
Q gi|254780713|r 86 QDFKDEELEED 96 (190)
Q Consensus 86 ~~lp~~~l~~~ 96 (190)
+++| +|++|
T Consensus 79 ~~lp--~L~eG 87 (87)
T 2dyi_A 79 ADLP--PLEEG 87 (87)
T ss_dssp GGSC--CCCTT
T ss_pred CCCC--CCCCC
T ss_conf 3478--74234
No 8
>>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, structural genomics, NPPSFA; 2.00A {Thermus thermophilus HB8} PDB: 2dog_A (A:88-162)
Probab=99.82 E-value=2.1e-20 Score=134.35 Aligned_cols=70 Identities=23% Similarity=0.439 Sum_probs=65.1
Q ss_pred CCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECC-----CCCEEEEECHHHHCCEEECCCCEEEEECCCCCCC
Q ss_conf 0214524011367525843119988665799508999749-----9828998750310010563397999952810038
Q gi|254780713|r 97 EFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170 (190)
Q Consensus 97 e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~-----~~ke~lIP~v~~~I~~ID~~~k~I~v~~p~Glld 170 (190)
||||+||+||+|++ +|+.+|+|.+|+++||||+|+|+++ ++|++|||| +|.+||+++++|.|+||+||||
T Consensus 1 E~Y~~DLiGl~V~d-eg~~iG~V~~V~~~ga~dvl~I~~~~~~~~~~k~~lIP~---vV~~Vd~~~~~i~v~~peGLld 75 (75)
T 2dyi_A 1 RYYYFALIGLPVYV-EGRQVGEVVDILDAGAQDVLIIRGVGERLRDRAERLVPL---QAPYVRVEEGSIHVDPIPGLFD 75 (75)
T ss_dssp CCCHHHHTTCEEEE-TTEEEEEEEEEEEETTEEEEEEEECCSSGGGSTTEEEET---TCTTEEECSSCEEECCCTTTCC
T ss_pred CCHHHHHHHHHHCC-CCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEC---CCCEEECCCCEEEEECCCCCCC
T ss_conf 40087776223022-444445898971159950999975875577996899545---4888956699999979997779
No 9
>>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} (H:116-260)
Probab=96.84 E-value=0.002 Score=38.84 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=46.6
Q ss_pred HHHHHCCEEEEECCCEEEEEEEEE-ECC-CC-EEEEEECCCCCEEEEECHHHHCCEEECCCC-EEEEECCCCCCCC
Q ss_conf 452401136752584311998866-579-95-089997499828998750310010563397-9999528100388
Q gi|254780713|r 100 NTDLEEMETFDRQGKYWGQVCGVY-NFG-AG-SILEIKNTMEKTFLIPFTKFAVLEVNLQEN-KILIDPIAAGLNN 171 (190)
Q Consensus 100 ~~dLiG~~V~d~~~~~iG~V~~v~-~~~-a~-dil~V~~~~~ke~lIP~v~~~I~~ID~~~k-~I~v~~p~Glld~ 171 (190)
-.+|+|+.|++.+|+.||+|.+++ +.. .. ..++|..-.+|.++||+-. +..... .++++...-.|.+
T Consensus 30 a~~l~G~~V~~~~ge~IG~V~dl~id~~~g~v~~~vV~~Gg~k~v~vP~~~-----~~~~~~~~~v~~~tke~l~~ 100 (145)
T 1rzh_H 30 GKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQM-----VKVQSNRVHVNALSSDLFAG 100 (145)
T ss_dssp SCCCTTCEEEETTSCEEEEEEEEEEETTTTEEEEEEEECTTSCEEEEEGGG-----CEECSSCEEESSCCGGGSTT
T ss_pred CCCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCEEEECCEE-----EEECCCEEEEECCCHHHHCC
T ss_conf 888567844868998512788989818878588999996998389833114-----46079849993367767626
No 10
>>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} (A:)
Probab=96.05 E-value=0.036 Score=31.75 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=40.2
Q ss_pred CCCCCHHHHHCCEEEEECCCEEEEEEEEEE-CCCCE--EEEEECC--------CCCEEEEECHHHHCCEE
Q ss_conf 100214524011367525843119988665-79950--8999749--------98289987503100105
Q gi|254780713|r 95 EDEFFNTDLEEMETFDRQGKYWGQVCGVYN-FGAGS--ILEIKNT--------MEKTFLIPFTKFAVLEV 153 (190)
Q Consensus 95 ~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~-~~a~d--il~V~~~--------~~ke~lIP~v~~~I~~I 153 (190)
...+..++|+|.+|++.+|..+|+|.++.= ...+- -++|... .++.+.||| +.|..+
T Consensus 19 ~~~~~~s~L~gk~V~~~~G~~iG~V~Dv~iD~~~G~i~~lvv~~~g~~~~l~~~~~~v~IP~--~~V~~v 86 (97)
T 1pm3_A 19 SHMRIVEEMVGKEVLDSSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPY--EMVKKI 86 (97)
T ss_dssp -CEETTTTSSSCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEG--GGEEEE
T ss_pred CCEEEHHHHCCCEEECCCCCEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEH--HHEEEE
T ss_conf 62478898289977999998988998899978999999999916984031002894799996--874498
No 11
>>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} (H:118-259)
Probab=96.04 E-value=0.019 Score=33.33 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=46.4
Q ss_pred CHHHHHCCEEEEECCCEEEEEEEEE-ECC-CC-EEEEEEC-CCCCEEEEECHHHHCCEEECCCCEEEEECCCCCCC
Q ss_conf 1452401136752584311998866-579-95-0899974-99828998750310010563397999952810038
Q gi|254780713|r 99 FNTDLEEMETFDRQGKYWGQVCGVY-NFG-AG-SILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170 (190)
Q Consensus 99 Y~~dLiG~~V~d~~~~~iG~V~~v~-~~~-a~-dil~V~~-~~~ke~lIP~v~~~I~~ID~~~k~I~v~~p~Glld 170 (190)
-..+|+|+.|++.+|+.||+|.+++ +.. +. ..++|.. -.+|.++||+- .+.-.+-..+.+.++...--|.
T Consensus 30 ~a~~l~G~~V~~~dge~IG~V~div~d~~~g~v~~vvv~~G~~~k~v~vP~~--~~~~~~~~~~~~~~~~t~~~l~ 103 (142)
T 1eys_H 30 GDPDPRGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEVEVAANKKKVLLPIG--FSRFDKKARKVKVDAIKAAHFA 103 (142)
T ss_dssp TSCCCTTCEEECSSSCEEEEEEEEEEETTTTEEEEEEEEETTTCCEEEEEGG--GCEEEGGGTEEECSSSCGGGGG
T ss_pred CCCCCCCCEEECCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCEEEECCC--CCEECCCCCEEEECCCCHHHHH
T ss_conf 9989998986868999677898999989989288999980688864896100--2311678787997554799982
No 12
>>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 3d38_H* 3prc_H* 5prc_H* 6prc_H* 7prc_H* 3g7f_H* (H:113-258)
Probab=95.60 E-value=0.02 Score=33.22 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=44.2
Q ss_pred CHHHHHCCEEEEECCCEEEEEEEEE-EC-CCC-EEEEEEC-CCCCEEEEECHHHHCCEEECCCCEEEEECCCCCCC
Q ss_conf 1452401136752584311998866-57-995-0899974-99828998750310010563397999952810038
Q gi|254780713|r 99 FNTDLEEMETFDRQGKYWGQVCGVY-NF-GAG-SILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170 (190)
Q Consensus 99 Y~~dLiG~~V~d~~~~~iG~V~~v~-~~-~a~-dil~V~~-~~~ke~lIP~v~~~I~~ID~~~k~I~v~~p~Glld 170 (190)
-..+|+|++|++.+|+.||+|.+++ +. .++ ..++|.. -.+|.++||+..- .++ ..+.++++...--|.
T Consensus 36 ~~~~l~G~~V~~~~G~~iG~V~dv~~d~~~g~v~~~Vv~~Ggf~k~v~vp~~~~---~~~-~~~~~~~~~t~~~i~ 107 (146)
T 2wjn_H 36 GDVDPRGLPVVAADGVEAGTVTDLWVDRSEHYFRYLELSVAGSARTALIPLGFC---DVK-KDKIVVTSILSEQFA 107 (146)
T ss_dssp TSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEEETTTTEEEEEEGGGC---EEC-SSCEECCSSCGGGGG
T ss_pred CCCCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCEEECCHHHC---EEC-CCEEEECCCCHHHHH
T ss_conf 889855673486899860457689997898848999999389783177167894---776-880898124688872
No 13
>>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris} (A:20-120)
Probab=95.53 E-value=0.054 Score=30.74 Aligned_cols=66 Identities=12% Similarity=0.213 Sum_probs=49.6
Q ss_pred HHCCEEEEECCCEEEEEEEEE-EC-CCC-EEEEEECC-----CCCEEEEECHHHHCCEEECCCCEEEEECCCCCCCC
Q ss_conf 401136752584311998866-57-995-08999749-----98289987503100105633979999528100388
Q gi|254780713|r 103 LEEMETFDRQGKYWGQVCGVY-NF-GAG-SILEIKNT-----MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171 (190)
Q Consensus 103 LiG~~V~d~~~~~iG~V~~v~-~~-~a~-dil~V~~~-----~~ke~lIP~v~~~I~~ID~~~k~I~v~~p~Glld~ 171 (190)
|+|++|++.+|+.+|+|.++. +. ... ..++|... .++.+.||+- ...++...+.+.++...--+..
T Consensus 1 L~G~~V~~~dge~iG~V~dv~id~~~g~v~~~vv~~gg~lg~g~~~v~vp~~---~~~~~~~~~~~~l~~t~~~~~~ 74 (101)
T 3htr_A 1 VQGTAVYGPDGEKIGSIERVXIEKVSGRVSYAVLSFGGFLGIGDDHYPLPWP---ALKYNVELGGYQVXVTVDQLER 74 (101)
T ss_dssp HTTCEEECTTSCEEEEEEEEEEETTTCBEEEEEEEESSBTTBSCEEEEECGG---GCEEETTTTEEECCCCHHHHHT
T ss_pred CCCCEEECCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCHH---HEEEECCCCEEECCCCHHHHHC
T ss_conf 3488889899898888889999889897889999828855588878865735---5476066898982589999942
No 14
>>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} (A:)
Probab=82.42 E-value=1.5 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=24.5
Q ss_pred CCEEEEEECCCCCHHHHHHHCCCEEEE
Q ss_conf 997999963877845567634968774
Q gi|254780713|r 57 NKRFIATFSGIDNIHSASELRDLKLYA 83 (190)
Q Consensus 57 ~~~~iikf~gi~s~~~A~~l~g~~i~i 83 (190)
.+..++|++|++++++|+.+.|+.+..
T Consensus 19 ~~~aLlKiegV~~~~ea~fylGKrvay 45 (95)
T 1sqr_A 19 NNVMIIKPLDVNSREEASKLIGRLVLW 45 (95)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHCCCEEEE
T ss_conf 987999986857879988634528999
No 15
>>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structure initiative; 2.11A {Pyrococcus furiosus dsm 3638} (C:)
Probab=69.21 E-value=7.3 Score=18.77 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=30.3
Q ss_pred HHCCEEEEECCCEEEEEEEEEECCCCEEEEEECCCC
Q ss_conf 401136752584311998866579950899974998
Q gi|254780713|r 103 LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTME 138 (190)
Q Consensus 103 LiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~~~ 138 (190)
-+|.-|++++...+|+|.+++-.-.++.+.|+...+
T Consensus 32 ~~~s~v~~e~~~~IGkV~evfGpv~~Pyy~V~~~~~ 67 (82)
T 2ey4_C 32 SLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVS 67 (82)
T ss_dssp CTTCEEECTTCCCCEEEEEEEEESSSCEEEEEECSS
T ss_pred CCCCEEECCCCCEEEEEEEEECCCCCCEEEEEECCC
T ss_conf 899998946884988998987888886899987887
No 16
>>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase/biosynthetic protein/RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} (B:)
Probab=59.13 E-value=12 Score=17.50 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=28.4
Q ss_pred HCCEEEEECCCEEEEEEEEEECCCCEEEEEECCCC
Q ss_conf 01136752584311998866579950899974998
Q gi|254780713|r 104 EEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTME 138 (190)
Q Consensus 104 iG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~~~ 138 (190)
+|.-|++++...||.|.+|+-.-.++.+.|+..++
T Consensus 33 ~~s~v~~e~~~~iG~V~evFGpV~~Pyy~V~~~~~ 67 (104)
T 2hvy_B 33 LNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVS 67 (104)
T ss_dssp TTCEEECTTCCEEEEEEEEEEESSSCEEEEEECSS
T ss_pred CCCEEEECCCCEEEEEEEEECCCCCCEEEEEECCC
T ss_conf 99999933996989999998888986899996878
No 17
>>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=51.27 E-value=17 Score=16.75 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=27.8
Q ss_pred HCCEEEEECCCEEEEEEEEEECCCCEEEEEECCC
Q ss_conf 0113675258431199886657995089997499
Q gi|254780713|r 104 EEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTM 137 (190)
Q Consensus 104 iG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~~ 137 (190)
+|--|++++...||+|.+++-.-.++.+.|+.+.
T Consensus 52 ~~s~v~~e~r~~IG~V~evFGpv~~P~y~Vk~~~ 85 (103)
T 2eqn_A 52 EETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNS 85 (103)
T ss_dssp TTCEEECTTSBEEEEEEEEESCSSSCEEEECCSS
T ss_pred CCCEEEECCCCEEEEEEEEECCCCCCEEEEEECC
T ss_conf 8898995899586899881189888689998286
No 18
>>2oqe_A Peroxisomal copper amine oxidase; protein-derived cofactor, TPQ, XE, xenon complex, oxidoreductase; HET: TPQ; 1.60A {Pichia angusta} (A:106-204)
Probab=37.95 E-value=25 Score=15.71 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=38.1
Q ss_pred CCCCCH-HHHHHHCCCEEEECHHHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEECC
Q ss_conf 387784-55676349687741777886556410021452401136752584311998866579
Q gi|254780713|r 65 SGIDNI-HSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126 (190)
Q Consensus 65 ~gi~s~-~~A~~l~g~~i~i~~~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~ 126 (190)
.|..++ ++.+.+..+..|...+ +.+.+|-+-|-|+.|+|-+. ++|+.|...+
T Consensus 41 ~G~~~~~e~~rRl~~~~~y~r~~-------~~~N~Ya~Pieg~~vvDl~~---~kVi~id~~~ 93 (99)
T 2oqe_A 41 IGYDERWGTGKRLQQALVYYRSD-------EDDSQYSHPLDFCPIVDTEE---KKVIFIDIPN 93 (99)
T ss_dssp CCCCTTTTTSSCEEEEEEEECSS-------TTSCGGGCBCSCEEEEETTT---TEEEEEECCS
T ss_pred ECCCCCCCCCCEEEEEEEEEECC-------CCCCCCCCCCCEEEEEECCC---CEEEEEECCC
T ss_conf 33778788876799999999538-------99875556214079983676---4899998688
No 19
>>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:227-294)
Probab=30.17 E-value=27 Score=15.53 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.9
Q ss_pred CCCHHHHHCCEEEEECCCEEEEEEE
Q ss_conf 0214524011367525843119988
Q gi|254780713|r 97 EFFNTDLEEMETFDRQGKYWGQVCG 121 (190)
Q Consensus 97 e~Y~~dLiG~~V~d~~~~~iG~V~~ 121 (190)
.+..+.+-++.|+|.+|+.+|.|+.
T Consensus 18 ~m~~~~i~~lPVvd~~gklvGiiT~ 42 (68)
T 2zy9_A 18 LMADYDFTVLPVVDEEGRLVGIVTV 42 (68)
T ss_dssp HHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred HHHCCCCCEECCCCCCCCEEEEEEH
T ss_conf 9750487211001236947877559
No 20
>>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} (A:1-14,A:56-118)
Probab=29.99 E-value=32 Score=15.17 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=25.7
Q ss_pred CCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEE
Q ss_conf 564100214524011367525843119988665
Q gi|254780713|r 92 ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124 (190)
Q Consensus 92 ~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~ 124 (190)
..++|+++|..+.+..++|.+|+.+|.+.-+.+
T Consensus 43 ~~kdG~~~Wv~~~~~pi~d~~G~i~~~iGi~~D 75 (77)
T 3icy_A 43 VTPEGKLHWIEDHXRSSFSDDGLFSGIDGILCE 75 (77)
T ss_dssp ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 825997999999999999999799999999997
No 21
>>3ddj_A CBS domain-containing protein; NP_344512.1, structural genomics, joint center for structural genomics, JCSG; HET: AMP; 1.80A {Sulfolobus solfataricus} (A:155-205)
Probab=25.41 E-value=40 Score=14.60 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=18.8
Q ss_pred CCHHHHHCCEEEEECCCEEEEEE
Q ss_conf 21452401136752584311998
Q gi|254780713|r 98 FFNTDLEEMETFDRQGKYWGQVC 120 (190)
Q Consensus 98 ~Y~~dLiG~~V~d~~~~~iG~V~ 120 (190)
+.-+.+-++.|.|++|..+|.|+
T Consensus 28 m~~~~i~~lPVVD~~g~lvGiiT 50 (51)
T 3ddj_A 28 XLRRGFRRLPVIDDDNKVVGIVT 50 (51)
T ss_dssp HHHHTCSEEEEECTTSCEEEEEE
T ss_pred HHHHCCCEEEEECCCCCEEEEEE
T ss_conf 98737640578727896799995
No 22
>>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} (A:452-513)
Probab=24.02 E-value=42 Score=14.50 Aligned_cols=23 Identities=0% Similarity=-0.025 Sum_probs=18.0
Q ss_pred EEECCCCEEEEECCCCCCCCCCC
Q ss_conf 05633979999528100388865
Q gi|254780713|r 152 EVNLQENKILIDPIAAGLNNTTM 174 (190)
Q Consensus 152 ~ID~~~k~I~v~~p~Glld~~~~ 174 (190)
.+...++.+.+..|+|||++...
T Consensus 8 ~L~a~~~~l~LtfP~gWL~~nPL 30 (62)
T 1u6z_A 8 TLITDDSHWTLRFPHDWFSQNAL 30 (62)
T ss_dssp EEEEETTEEEEEECTTGGGGCHH
T ss_pred EEEECCCEEEEEECCCHHHHCCH
T ss_conf 99965988999988601331908
No 23
>>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase, neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia coli} (1:378-454)
Probab=22.38 E-value=40 Score=14.64 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=26.3
Q ss_pred CCCCCCCHHHHHCCEEEEECCCEEEEE-EEEEECC
Q ss_conf 641002145240113675258431199-8866579
Q gi|254780713|r 93 LEEDEFFNTDLEEMETFDRQGKYWGQV-CGVYNFG 126 (190)
Q Consensus 93 l~~~e~Y~~dLiG~~V~d~~~~~iG~V-~~v~~~~ 126 (190)
.++.+-|..|+.=+.|+|.+++.+|.+ .|.+..+
T Consensus 7 ~~~~~~wh~dV~~~~V~d~~g~~lG~~YlDl~~R~ 41 (77)
T 1y79_1 7 RFDIPVYHPDVRVWEIFDHNGVGLALFYGDFFARD 41 (77)
T ss_dssp ESSSCCSSTTCEEEEEECTTSCEEEEEEEEEECCT
T ss_pred CCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 57777436870699998048972037873046520
No 24
>>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Sulfolobus tokodaii str} (A:78-133)
Probab=21.51 E-value=53 Score=13.91 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=19.0
Q ss_pred CCHHHHHCCEEEEECCCEEEEEEE
Q ss_conf 214524011367525843119988
Q gi|254780713|r 98 FFNTDLEEMETFDRQGKYWGQVCG 121 (190)
Q Consensus 98 ~Y~~dLiG~~V~d~~~~~iG~V~~ 121 (190)
+.-+.+-++.|+|++|..+|.|+.
T Consensus 16 m~~~~i~~lPVVD~~~~lvGiiT~ 39 (56)
T 2ef7_A 16 XRQFNIRHLPVVDDKGNLKGIISI 39 (56)
T ss_dssp HHHHTCSEEEEECTTSCEEEEEEH
T ss_pred HHHCCCCEEEEEECCCEEEEEEEH
T ss_conf 988496189999389969999999
No 25
>>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation factor (EIF), SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} (A:)
Probab=21.26 E-value=55 Score=13.84 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=36.5
Q ss_pred EECCCEEEEEEEEEECCCCEEEEEECCCCCEEEEECHHHHCCEEEC-CCCEEEEECCCC
Q ss_conf 5258431199886657995089997499828998750310010563-397999952810
Q gi|254780713|r 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNL-QENKILIDPIAA 167 (190)
Q Consensus 110 d~~~~~iG~V~~v~~~~a~dil~V~~~~~ke~lIP~v~~~I~~ID~-~~k~I~v~~p~G 167 (190)
...++.+|.|+...- +.+++|.+.+|+++|.-+-.-|=..|=. ..-.+.|+|-++
T Consensus 29 ~~~~e~~g~V~~~~G---~~~~~V~~~dg~~~l~~ipgK~Rk~iwI~~GD~VlVe~~~~ 84 (117)
T 2oqk_A 29 KEEGQEYGQVQRXLG---NGRLDAYCFDGQKRLCHIRGKXRKKVWVNPGDIVLVSLRDF 84 (117)
T ss_dssp CCTTEEEEEEEEEEE---TTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTT
T ss_pred CCCCEEEEEEEEECC---CCEEEEEECCCCEEEEEECCCCCCEEEEECCCEEEEECCCC
T ss_conf 999828999999739---97899998899999999742120117980899999943257
No 26
>>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} (A:1-16,A:76-151)
Probab=21.15 E-value=54 Score=13.87 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=20.2
Q ss_pred CCHHHHHCCEEEEECCCEEEEEEEE
Q ss_conf 2145240113675258431199886
Q gi|254780713|r 98 FFNTDLEEMETFDRQGKYWGQVCGV 122 (190)
Q Consensus 98 ~Y~~dLiG~~V~d~~~~~iG~V~~v 122 (190)
+..+.+-++.|+|++|..+|.|..-
T Consensus 42 m~~~~i~~lPVvD~~~~lvGiit~~ 66 (92)
T 1pvm_A 42 LSENGLERCAVVDDPGRVVGIVTLT 66 (92)
T ss_dssp HHHHTCSEEEEECTTCCEEEEEEHH
T ss_pred HHHCCCCEEEEEECCCEEEEEEEHH
T ss_conf 9983981999994799699999999
No 27
>>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} (A:1-67)
Probab=21.11 E-value=55 Score=13.82 Aligned_cols=43 Identities=7% Similarity=0.200 Sum_probs=31.7
Q ss_pred CHHHHHHHCCCEEEECHHHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEE
Q ss_conf 845567634968774177788655641002145240113675258431199
Q gi|254780713|r 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119 (190)
Q Consensus 69 s~~~A~~l~g~~i~i~~~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V 119 (190)
.+..++.++...-||-++++.. ..++++. .+|+|.+|+.||.=
T Consensus 7 ~~~~~~~l~~ghPwi~~~~i~~-~~~~G~~-------V~v~d~~g~~lg~g 49 (67)
T 2b78_A 7 GSFAEKKLKRGVQLLSSRDYPN-LNLDNQV-------VQLYSDADIFLGTA 49 (67)
T ss_dssp CHHHHHHHHHTCCEEEGGGSTT-CCCCSEE-------EEEECTTCCEEEEE
T ss_pred CHHHHHHHHCCCCEEECCCCCC-CCCCCCE-------EEEECCCCCEEEEE
T ss_conf 6789888865993687023788-7789988-------99995899889999
No 28
>>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:204-278)
Probab=20.15 E-value=55 Score=13.82 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=19.9
Q ss_pred CCHHHHHCCEEEEECCCEEEEEEE
Q ss_conf 214524011367525843119988
Q gi|254780713|r 98 FFNTDLEEMETFDRQGKYWGQVCG 121 (190)
Q Consensus 98 ~Y~~dLiG~~V~d~~~~~iG~V~~ 121 (190)
+..+.+-++.|+|.+|..+|.|+.
T Consensus 22 m~~~~~~~lpVvD~~g~lvGiit~ 45 (75)
T 2yvy_A 22 MADYDFTVLPVVDEEGRLVGIVTV 45 (75)
T ss_dssp HHHHTCSEEEEECTTSBEEEEEEH
T ss_pred HHHCCCEEEEEECCCCEEEEEEEH
T ss_conf 997498089898689969999789
Done!