HHSEARCH alignment of GI: 254780713 and SCOP domain: d2f1la2

Alignment
>d2f1la2 b.43.3.4 (A:7-95) 16S rRNA processing protein RimM, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.84  E-value=3.6e-21  Score=136.41  Aligned_cols=85  Identities=20%  Similarity=0.367  Sum_probs=76.2

Q ss_pred             CEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEEC----CCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEE
Q ss_conf             0799999944630505999994189977876301020----798379999999739979999638778455676349687
Q gi|254780713|r    6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKL   81 (190)
Q Consensus         6 ~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i   81 (190)
                      |++.||+|++|||+|||++|++||++++.+..+..+.    ....++.+++.+.++++++++|+|++||++|++|+|+.|
T Consensus         1 d~i~iGki~~~hGlkG~vki~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vk~~~i~~r~~Ae~l~g~~i   80 (89)
T d2f1la2           1 DLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTFTGYEI   80 (89)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEECSSSGGGGGGCCEEEEEETTEEEEEEEEEEEEETTEEEEEETTCCSHHHHHTTTTCEE
T ss_pred             CEEEEEEEECCEEEEEEEEEEECCCCHHHHHCCCEEEEECCCEEEEEEEEEEEECCCEEEEEECCCCCHHHHHHHCCCEE
T ss_conf             97999999088700189999987889889837884998009958999999988406279999908899899997579999


Q ss_pred             EECHHHCCC
Q ss_conf             741777886
Q gi|254780713|r   82 YAKRQDFKD   90 (190)
Q Consensus        82 ~i~~~~lp~   90 (190)
                      |+++++||.
T Consensus        81 ~i~~~~LPs   89 (89)
T d2f1la2          81 CIPRSELPS   89 (89)
T ss_dssp             EEEGGGSCC
T ss_pred             EEEHHHCCC
T ss_conf             999999999


SCOP domain information

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: RimM N-terminal domain-like
domain: 16S rRNA processing protein RimM, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]