Query gi|254780713|ref|YP_003065126.1| 16S rRNA-processing protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 190
No_of_seqs 117 out of 1571
Neff 6.9
Searched_HMMs 13730
Date Wed Jun 1 09:08:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780713.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f1la2 b.43.3.4 (A:7-95) 16S 99.8 3.6E-21 2.6E-25 136.4 9.7 85 6-90 1-89 (89)
2 d2f1la1 b.41.1.4 (A:101-175) 1 99.8 3.5E-21 2.6E-25 136.5 8.4 71 98-168 1-75 (75)
3 d1eysh1 b.41.1.1 (H:59-259) Ph 97.0 0.00083 6.1E-08 38.7 6.1 90 78-170 54-162 (201)
4 d1rzhh1 b.41.1.1 (H:36-248) Ph 96.8 0.0016 1.2E-07 37.2 6.5 58 101-163 111-171 (213)
5 d2i5nh1 b.41.1.1 (H:37-258) Ph 95.5 0.01 7.3E-07 32.7 4.9 82 77-163 76-175 (222)
6 d1pm3a_ b.41.1.2 (A:) MTH1895 91.3 0.2 1.5E-05 25.3 5.4 52 100-153 5-67 (78)
7 d1sqra_ b.43.3.3 (A:) Ribosoma 80.6 0.78 5.7E-05 22.0 3.6 27 57-83 19-45 (87)
8 d2ey4c1 b.43.3.5 (C:1-73) Gar1 70.6 2.7 0.00019 19.0 4.1 35 104-138 26-60 (73)
9 d2b78a1 b.122.1.9 (A:1-68) Hyp 41.0 8.4 0.00061 16.2 2.5 43 69-119 7-49 (68)
10 d1bywa_ d.110.3.6 (A:) Erg pot 23.5 20 0.0014 14.1 2.0 31 93-123 75-105 (110)
No 1
>d2f1la2 b.43.3.4 (A:7-95) 16S rRNA processing protein RimM, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.84 E-value=3.6e-21 Score=136.41 Aligned_cols=85 Identities=20% Similarity=0.367 Sum_probs=76.2
Q ss_pred CEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEEC----CCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEE
Q ss_conf 0799999944630505999994189977876301020----798379999999739979999638778455676349687
Q gi|254780713|r 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKL 81 (190)
Q Consensus 6 ~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i 81 (190)
|++.||+|++|||+|||++|++||++++.+..+..+. ....++.+++.+.++++++++|+|++||++|++|+|+.|
T Consensus 1 d~i~iGki~~~hGlkG~vki~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vk~~~i~~r~~Ae~l~g~~i 80 (89)
T d2f1la2 1 DLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTFTGYEI 80 (89)
T ss_dssp CEEEEEEEEEEETTTTEEEEEECSSSGGGGGGCCEEEEEETTEEEEEEEEEEEEETTEEEEEETTCCSHHHHHTTTTCEE
T ss_pred CEEEEEEEECCEEEEEEEEEEECCCCHHHHHCCCEEEEECCCEEEEEEEEEEEECCCEEEEEECCCCCHHHHHHHCCCEE
T ss_conf 97999999088700189999987889889837884998009958999999988406279999908899899997579999
Q ss_pred EECHHHCCC
Q ss_conf 741777886
Q gi|254780713|r 82 YAKRQDFKD 90 (190)
Q Consensus 82 ~i~~~~lp~ 90 (190)
|+++++||.
T Consensus 81 ~i~~~~LPs 89 (89)
T d2f1la2 81 CIPRSELPS 89 (89)
T ss_dssp EEEGGGSCC
T ss_pred EEEHHHCCC
T ss_conf 999999999
No 2
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.84 E-value=3.5e-21 Score=136.49 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=66.6
Q ss_pred CCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECC----CCCEEEEECHHHHCCEEECCCCEEEEECCCCC
Q ss_conf 214524011367525843119988665799508999749----98289987503100105633979999528100
Q gi|254780713|r 98 FFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168 (190)
Q Consensus 98 ~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~----~~ke~lIP~v~~~I~~ID~~~k~I~v~~p~Gl 168 (190)
|||+|||||+|+|.+|+.+|+|.+|+++||||+|+|++. +++++||||+++||.+||+++|+|+|++|+++
T Consensus 1 fY~~dLiG~~V~d~~g~~lG~V~~v~~~ga~dll~I~~~~~~~~~keiLIP~v~~~V~~ID~~~k~I~Vdw~~d~ 75 (75)
T d2f1la1 1 YYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVDWDADF 75 (75)
T ss_dssp CCHHHHTTCEEEETTSCEEEEEEEEECCSSSCEEEEECCTTSSSSCCEEEECSTTTEEEEETTTTEEEECCCTTC
T ss_pred CCHHHCCCCEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCC
T ss_conf 987994897999489999899989810699329999827888898099998572202489678999999579998
No 3
>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre {Thermochromatium tepidum [TaxId: 1050]}
Probab=96.98 E-value=0.00083 Score=38.75 Aligned_cols=90 Identities=21% Similarity=0.256 Sum_probs=60.4
Q ss_pred CCEEEECHHHCCCCCC----------CCCCCCH----HHHHCCEEEEECCCEEEEEEEEE-ECCCC--EEEEEECCC-CC
Q ss_conf 9687741777886556----------4100214----52401136752584311998866-57995--089997499-82
Q gi|254780713|r 78 DLKLYAKRQDFKDEEL----------EEDEFFN----TDLEEMETFDRQGKYWGQVCGVY-NFGAG--SILEIKNTM-EK 139 (190)
Q Consensus 78 g~~i~i~~~~lp~~~l----------~~~e~Y~----~dLiG~~V~d~~~~~iG~V~~v~-~~~a~--dil~V~~~~-~k 139 (190)
|---|.+|.+.|+... ....|.+ .|++|+.|++.+|+.+|+|.+++ +...+ -.++|.+.. ++
T Consensus 54 Gp~~wa~R~d~P~l~~~g~~~i~p~~~~~~~~v~~g~~DprG~~V~~~DG~~vGtV~Dv~vD~~e~~vRYleVdtg~ggk 133 (201)
T d1eysh1 54 GPAASPDRPKHCDLTFEGLPKIVPMRVAKEFSIAEGDPDPRGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEVEVAANKK 133 (201)
T ss_dssp GGGCCCCCCSSCCBCSSCSBSSEETTTSTTCEECTTSCCCTTCEEECSSSCEEEEEEEEEEETTTTEEEEEEEEETTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCEEECCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 77556445678655568980587632368726625889854574583899878788889997888928899999558995
Q ss_pred EEEEECHHHHCCEEECCCCEEEEE-CCCCCCC
Q ss_conf 899875031001056339799995-2810038
Q gi|254780713|r 140 TFLIPFTKFAVLEVNLQENKILID-PIAAGLN 170 (190)
Q Consensus 140 e~lIP~v~~~I~~ID~~~k~I~v~-~p~Glld 170 (190)
.+|||+. ...||...+.+.|+ +-.--+.
T Consensus 134 ~vLvP~~---~a~id~~~~~V~V~altk~q~~ 162 (201)
T d1eysh1 134 KVLLPIG---FSRFDKKARKVKVDAIKAAHFA 162 (201)
T ss_dssp EEEEEGG---GCEEEGGGTEEECSSSCGGGGG
T ss_pred EEEEEEE---EEEECCCCCEEEEECCCHHHHH
T ss_conf 7997620---0276388888999222789983
No 4
>d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=96.82 E-value=0.0016 Score=37.18 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=44.0
Q ss_pred HHHHCCEEEEECCCEEEEEEEEE-ECCCC--EEEEEECCCCCEEEEECHHHHCCEEECCCCEEEEE
Q ss_conf 52401136752584311998866-57995--08999749982899875031001056339799995
Q gi|254780713|r 101 TDLEEMETFDRQGKYWGQVCGVY-NFGAG--SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163 (190)
Q Consensus 101 ~dLiG~~V~d~~~~~iG~V~~v~-~~~a~--dil~V~~~~~ke~lIP~v~~~I~~ID~~~k~I~v~ 163 (190)
.|++|+.|++.+|+.+|+|.+++ +...+ -.|+|++..++++|+|+.-. .++ ...+.|.
T Consensus 111 ~DprG~~V~~~DG~kIGtV~DvwvD~~e~~vRYleV~tgggk~vLvP~~~a---~i~--~d~V~V~ 171 (213)
T d1rzhh1 111 KNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMV---KVQ--SNRVHVN 171 (213)
T ss_dssp CCCTTCEEEETTSCEEEEEEEEEEETTTTEEEEEEEECTTSCEEEEEGGGC---EEC--SSCEEES
T ss_pred CCCCCCEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCEEEECHHHE---EEC--CCEEEEC
T ss_conf 885678438689985307889999788785889999928985897034525---866--9928983
No 5
>d2i5nh1 b.41.1.1 (H:37-258) Photosynthetic reaction centre {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=95.48 E-value=0.01 Score=32.66 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=51.7
Q ss_pred CCCEEEECHHHCCCCCCC----------CCCCCH----HHHHCCEEEEECCCEEEEEEEEE-ECCCC--EEEEEECC-CC
Q ss_conf 496877417778865564----------100214----52401136752584311998866-57995--08999749-98
Q gi|254780713|r 77 RDLKLYAKRQDFKDEELE----------EDEFFN----TDLEEMETFDRQGKYWGQVCGVY-NFGAG--SILEIKNT-ME 138 (190)
Q Consensus 77 ~g~~i~i~~~~lp~~~l~----------~~e~Y~----~dLiG~~V~d~~~~~iG~V~~v~-~~~a~--dil~V~~~-~~ 138 (190)
+|---|.+|.+.|+.... ...|.+ .|++|+.|+..+|+.+|+|.+++ +...+ -.|+|++. .+
T Consensus 76 vGp~s~a~R~d~p~l~~~g~~~i~Pmr~~~~~~v~~~~~DprG~~V~g~DGekIGtV~DvwVD~~e~~vRYleVetg~gg 155 (222)
T d2i5nh1 76 VGPASYAERAEVVDATVDGKAKIVPLRVATDFSIAEGDVDPRGLPVVAADGVEAGTVTDLWVDRSEHYFRYLELSVAGSA 155 (222)
T ss_dssp CGGGCCCCCCSCBCBCTTSSBSEEETTTCTTCEECTTSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEEETTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCEEECCCCCEEEEEEEEEEECCCCEEEEEEEEECCCC
T ss_conf 47533555578876678998568762026882661688875567458689986127889899688885999999828988
Q ss_pred CEEEEECHHHHCCEEECCCCEEEEE
Q ss_conf 2899875031001056339799995
Q gi|254780713|r 139 KTFLIPFTKFAVLEVNLQENKILID 163 (190)
Q Consensus 139 ke~lIP~v~~~I~~ID~~~k~I~v~ 163 (190)
+.+|||+.-. .++. ..+.|.
T Consensus 156 k~vLvP~~~a---~i~~--d~v~V~ 175 (222)
T d2i5nh1 156 RTALIPLGFC---DVKK--DKIVVT 175 (222)
T ss_dssp EEEEEEGGGC---EECS--SCEECC
T ss_pred CEEEEEHHHC---EECC--CCEEEC
T ss_conf 5576320211---6558--938982
No 6
>d1pm3a_ b.41.1.2 (A:) MTH1895 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=91.26 E-value=0.2 Score=25.30 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=37.4
Q ss_pred HHHHHCCEEEEECCCEEEEEEEEE---ECCCCEEEEEECC--------CCCEEEEECHHHHCCEE
Q ss_conf 452401136752584311998866---5799508999749--------98289987503100105
Q gi|254780713|r 100 NTDLEEMETFDRQGKYWGQVCGVY---NFGAGSILEIKNT--------MEKTFLIPFTKFAVLEV 153 (190)
Q Consensus 100 ~~dLiG~~V~d~~~~~iG~V~~v~---~~~a~dil~V~~~--------~~ke~lIP~v~~~I~~I 153 (190)
..||+|.+|.|.+.+.+|+|.++- ++++-.-|+|... .+.|..+|+ +.|..|
T Consensus 5 ~~dliGk~VlD~~A~~IGkV~DvEiD~esg~vtsLiI~k~Gis~~igl~~~e~~Vp~--e~V~~I 67 (78)
T d1pm3a_ 5 VEEMVGKEVLDSSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPY--EMVKKI 67 (78)
T ss_dssp TTTSSSCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEG--GGEEEE
T ss_pred HHHHHCCHHCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCHHHCCCCCEEECCH--HHHHHH
T ss_conf 875728500066410112354579867778068999737641101000487088179--997432
No 7
>d1sqra_ b.43.3.3 (A:) Ribosomal protein L35ae {Pyrococcus furiosus [TaxId: 2261]}
Probab=80.64 E-value=0.78 Score=22.02 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=24.7
Q ss_pred CCEEEEEECCCCCHHHHHHHCCCEEEE
Q ss_conf 997999963877845567634968774
Q gi|254780713|r 57 NKRFIATFSGIDNIHSASELRDLKLYA 83 (190)
Q Consensus 57 ~~~~iikf~gi~s~~~A~~l~g~~i~i 83 (190)
.+..+++++|++++++|+.+.|+.+..
T Consensus 19 ~~~~Llkiegv~~k~~a~fylGKrv~y 45 (87)
T d1sqra_ 19 NNVMIIKPLDVNSREEASKLIGRLVLW 45 (87)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHCCCEEEE
T ss_conf 987999986857889988646727999
No 8
>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=70.58 E-value=2.7 Score=19.03 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=29.9
Q ss_pred HCCEEEEECCCEEEEEEEEEECCCCEEEEEECCCC
Q ss_conf 01136752584311998866579950899974998
Q gi|254780713|r 104 EEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTME 138 (190)
Q Consensus 104 iG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~~~ 138 (190)
+|..|++++...+|+|.+++-.-.++.+.|+...+
T Consensus 26 ~~~~v~~~~~~~iG~v~evfGpv~~P~~~v~~~~~ 60 (73)
T d2ey4c1 26 LNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVS 60 (73)
T ss_dssp TTCEEECTTCCCCEEEEEEEEESSSCEEEEEECSS
T ss_pred CCCEEECCCCCEEEEEEEEECCCCCCEEEEEECCC
T ss_conf 99996976895878999988888985899997899
No 9
>d2b78a1 b.122.1.9 (A:1-68) Hypothetical protein SMu776, N-terminal domain {Streptococcus mutans [TaxId: 1309]}
Probab=40.99 E-value=8.4 Score=16.23 Aligned_cols=43 Identities=7% Similarity=0.230 Sum_probs=30.9
Q ss_pred CHHHHHHHCCCEEEECHHHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEE
Q ss_conf 845567634968774177788655641002145240113675258431199
Q gi|254780713|r 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119 (190)
Q Consensus 69 s~~~A~~l~g~~i~i~~~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V 119 (190)
++...+++++..-.+.++++..+. .++++ .+++|.++++||+=
T Consensus 7 ~~~~ekK~k~GypLl~~ed~~~~~-~eg~~-------v~l~~~~~~flg~g 49 (68)
T d2b78a1 7 GSFAEKKLKRGVQLLSSRDYPNLN-LDNQV-------VQLYSDADIFLGTA 49 (68)
T ss_dssp CHHHHHHHHHTCCEEEGGGSTTCC-CCSEE-------EEEECTTCCEEEEE
T ss_pred CHHHHHHHHCCCCEEEHHHCCCCC-CCCCE-------EEEECCCCCEEEEE
T ss_conf 367877765598158788802853-47979-------99996789599998
No 10
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.46 E-value=20 Score=14.13 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHCCEEEEECCCEEEEEEEEE
Q ss_conf 6410021452401136752584311998866
Q gi|254780713|r 93 LEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123 (190)
Q Consensus 93 l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~ 123 (190)
-.+++.+|.++-...++|.+|+.+|.|.-+.
T Consensus 75 ~~~g~~~w~~~~~~pi~d~~G~v~~~i~~~~ 105 (110)
T d1bywa_ 75 RKDGSCFLCLVDVVPVKNEDGAVIMFILNFE 105 (110)
T ss_dssp CTTSCEEEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred ECCCCEEEEEEEEEEEECCCCCEEEEEEEEE
T ss_conf 0132201123367789989999999999999
Done!