RPSBLAST alignment for GI: 254780713 and conserved domain: TIGR02273

>gnl|CDD|162792 TIGR02273, 16S_RimM, 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. Length = 165
 Score =  122 bits (309), Expect = 5e-29
 Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 8/166 (4%)

Query: 7   LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRK---NKRFI 61
           L+++  IG  HG+ GEV + S+ + P  L  Y   L    +++ + +K+ R    N + I
Sbjct: 1   LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLILKGSKQWQTVKVARVRKQNNKLI 60

Query: 62  ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
             F GID+  +A  L+ L+L+  R+     ELEEDE++ TDL  +E    +G+  G+V  
Sbjct: 61  VKFEGIDDREAAEALKGLELFVPREAL--PELEEDEYYWTDLIGLEVVTEEGEELGKVVE 118

Query: 122 VYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
           +   GA  +L +++   +K  LIPF +  V E++L++  I +D   
Sbjct: 119 ILETGANDVLVVRSKKGKKEVLIPFVEEIVKEIDLEKKIITVDWPE 164