BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780713|ref|YP_003065126.1| 16S rRNA-processing protein
[Candidatus Liberibacter asiaticus str. psy62]
         (190 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780713|ref|YP_003065126.1| 16S rRNA-processing protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 190

 Score =  393 bits (1010), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
           MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF
Sbjct: 1   MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60

Query: 61  IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
           IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC
Sbjct: 61  IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120

Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
           GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD
Sbjct: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180

Query: 181 CPLDSAGKKS 190
           CPLDSAGKKS
Sbjct: 181 CPLDSAGKKS 190


>gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 246

 Score = 24.6 bits (52), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 118 QVCGVYNFGAGSILEIKNTMEK 139
            VCG+Y +  G+IL+I   + K
Sbjct: 221 SVCGIYLYSIGAILQIFPNLGK 242


>gi|254780386|ref|YP_003064799.1| Type I secretion membrane fusion protein, HlyD [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 440

 Score = 23.5 bits (49), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 105 EMETFDRQGKYWGQVCGVYNFGAGSI 130
           E +  D  GKY      V+N+G  S+
Sbjct: 135 EEQLLDFLGKYHSTCSKVFNYGISSV 160


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1386

 Score = 23.5 bits (49), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 23  VYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF-IATFS 65
           +Y+DS  NN    N  V   N +R+  +L +YR  +   ++TFS
Sbjct: 347 LYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFS 390


>gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 172

 Score = 23.1 bits (48), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 28  YANNPIDLNRY-VLYSNDNRELRIL 51
           Y+++P+   +  V +SNDN E R+L
Sbjct: 82  YSDSPVIAPKISVSFSNDNNEFRVL 106


>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score = 21.9 bits (45), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
           C +   G G  L+  N +EK  +   T      ++L   KIL + ++A
Sbjct: 122 CAIIEVGLGGSLDATNIIEKVAVSVIT-----SISLDHEKILGNTVSA 164


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.137    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,964
Number of Sequences: 1233
Number of extensions: 5375
Number of successful extensions: 17
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 10
length of query: 190
length of database: 328,796
effective HSP length: 69
effective length of query: 121
effective length of database: 243,719
effective search space: 29489999
effective search space used: 29489999
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)