Query         gi|254780714|ref|YP_003065127.1| tRNA (guanine-N(1)-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 236
No_of_seqs    141 out of 1853
Neff          4.7 
Searched_HMMs 33803
Date          Wed Jun  1 14:25:10 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780714.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1ual_A TRNA (guanine-N(1)-)-m 100.0       0       0  545.2  14.5  170    2-172    20-189 (189)
  2 >3ky7_A TRNA (guanine-N(1)-)-m 100.0       0       0  546.0  12.9  169    2-173    24-192 (192)
  3 >3knu_A TRNA (guanine-N(1)-)-m 100.0       0       0  541.6  14.1  168    2-171    21-188 (188)
  4 >3ief_A TRNA (guanine-N(1)-)-m 100.0       0       0  542.3  13.4  167    1-172     2-168 (168)
  5 >1oy5_A TRNA (guanine-N(1)-)-m 100.0       0       0  521.0  14.9  167    2-173     5-171 (171)
  6 >1ual_A TRNA (guanine-N(1)-)-m  99.9 1.5E-26 4.3E-31  196.9   4.5   63  173-235     1-63  (85)
  7 >3ief_A TRNA (guanine-N(1)-)-m  99.9 3.5E-26   1E-30  194.4   5.3   64  173-236     1-64  (65)
  8 >3knu_A TRNA (guanine-N(1)-)-m  99.9 2.8E-25 8.3E-30  188.5   1.7   64  172-236     1-64  (65)
  9 >1oy5_A TRNA (guanine-N(1)-)-m  99.8 3.7E-21 1.1E-25  161.2  -1.1   50  174-223     1-50  (50)
 10 >3ky7_A TRNA (guanine-N(1)-)-m  99.1 6.6E-11 1.9E-15   93.3   3.6   36  200-235     1-36  (51)
 11 >2v3j_A Essential for mitotic   96.8   0.002 5.8E-08   43.9   4.5   80   82-164   172-253 (258)
 12 >1ns5_A Hypothetical protein Y  95.1   0.047 1.4E-06   34.7   5.3  111   31-159    29-144 (155)
 13 >1to0_A Hypothetical UPF0247 p  95.1   0.091 2.7E-06   32.8   6.7   76   82-159    68-149 (167)
 14 >1o6d_A Hypothetical UPF0247 p  94.9   0.082 2.4E-06   33.1   6.1  136    1-159     1-143 (163)
 15 >1vh0_A Hypothetical UPF0247 p  94.2   0.089 2.6E-06   32.9   5.0  137    1-158     1-150 (161)
 16 >2a5l_A Trp repressor binding   68.6     5.7 0.00017   21.0   3.5   52    1-53      4-55  (200)
 17 >1k3r_A Conserved protein MT00  65.0     3.5  0.0001   22.3   1.8   84   41-132    71-159 (192)
 18 >3hq2_A Bacillus subtilis M32   48.3     7.2 0.00021   20.3   1.1   85  143-231    88-184 (187)
 19 >3d3r_A Hydrogenase assembly c  48.2     5.5 0.00016   21.0   0.5   25  118-142    44-68  (73)
 20 >2vzf_A NADH-dependent FMN red  42.1      27 0.00079   16.5   4.6   77    1-93      1-79  (197)
 21 >1d4a_A DT-diaphorase, quinone  41.4      27 0.00081   16.4   6.6   49    1-50      1-51  (225)
 22 >1huf_A Tyrosine phosphatase Y  40.6      17 0.00051   17.7   2.1   29   57-85      1-29  (140)
 23 >3jsz_A LGT1, putative unchara  39.1      30 0.00088   16.2   4.6  103   56-166    31-133 (303)
 24 >1oy0_A Ketopantoate hydroxyme  37.9      28 0.00082   16.4   2.8   74   84-157     8-88  (234)
 25 >2ot2_A Hydrogenase isoenzymes  31.7      14 0.00041   18.4   0.4   13  132-144    40-52  (75)
 26 >1xew_Y SMC protein; structura  30.3      25 0.00073   16.7   1.5   22  139-160    62-85  (85)
 27 >2yzk_A OPRT, oprtase, orotate  28.1      15 0.00045   18.1   0.1   12  135-146     3-14  (24)
 28 >1rcu_A Conserved hypothetical  26.7      47  0.0014   14.9   3.0   35   95-129    40-77  (195)
 29 >2z06_A Putative uncharacteriz  26.5      47  0.0014   14.9   3.7   54   66-121   121-174 (252)
 30 >2pyg_A Poly(beta-D-mannuronat  26.4      48  0.0014   14.8   3.7   44   37-97      2-45  (377)
 31 >2d7u_A Adenylosuccinate synth  24.2      52  0.0015   14.6   4.5  126   53-189    65-193 (339)
 32 >2v40_A Adenylosuccinate synth  23.8      53  0.0016   14.5   6.1  133   55-189    95-272 (459)
 33 >1td6_A F10_ORF294, hypothetic  23.5      20 0.00059   17.4   0.0   69   56-131     7-85  (116)
 34 >2k1k_A Ephrin type-A receptor  23.4      23 0.00069   16.9   0.4   11  141-151     8-18  (38)
 35 >1h80_A IOTA-carrageenase; hyd  22.4      57  0.0017   14.3   3.8   49   34-98     19-67  (182)
 36 >1p9b_A Adenylosuccinate synth  21.5      59  0.0017   14.2   5.3  131   53-189    76-246 (442)
 37 >1d9n_A Methyl-CPG-binding pro  21.0      60  0.0018   14.2   2.3   18   83-100    29-46  (75)
 38 >3l83_A Glutamine amido transf  20.3      62  0.0018   14.1   4.1   72    1-77      1-75  (250)
 39 >2fnu_A Aminotransferase; prot  20.2      63  0.0019   14.1   2.0   65   86-150   115-185 (238)

No 1  
>>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} (A:1-189)
Probab=100.00  E-value=0  Score=545.22  Aligned_cols=170  Identities=44%  Similarity=0.749  Sum_probs=165.2

Q ss_pred             CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC
Q ss_conf             54589985183564456403367999974965999960256358985135311306888617750588999998753114
Q gi|254780714|r    2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT   81 (236)
Q Consensus         2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~   81 (236)
                      .|+|+|+|||||||++++++||+|||+++|+|++++||||||+.||||+|||+||||||||||||||+++|+++++++. 
T Consensus        20 ~M~i~vlTLFPe~f~~~l~~siigrA~~~gl~~i~~~nlRdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~-   98 (189)
T 1ual_A           20 HMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAA-   98 (189)
T ss_dssp             CEEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSCCEECHHHHHHHHHHHHHHH-
T ss_pred             CCEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHC-
T ss_conf             7889999988564011222348999998797689988826608898866467857899863152256788999987404-


Q ss_pred             CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf             77830899879987604899999730287599941501144899974045310033401117327799999999985057
Q gi|254780714|r   82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG  161 (236)
Q Consensus        82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG  161 (236)
                      .++++||||||||++|||++|++||++++|+|||||||||||||+|+++|+|||||||||||||+||||++|||+||+||
T Consensus        99 ~~~~~vi~lsP~G~~f~Q~~a~~La~~~~liliCGrYEGiDeRv~~~~vd~EiSIGDyVLtGGElaAmviiDav~RliPG  178 (189)
T 1ual_A           99 GEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPG  178 (189)
T ss_dssp             CTTCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHTTSTT
T ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEECCEEHHHHHHHHHHCCEEEECCCEEEECCCHHHHHHHHHHHHHHCC
T ss_conf             88984662476515550799997513563899965554076688875312363421488736645665568999988447


Q ss_pred             CCCCCCCCCCC
Q ss_conf             46782223344
Q gi|254780714|r  162 VLGNQQSTIHE  172 (236)
Q Consensus       162 vlg~~~S~~~e  172 (236)
                      ||||++|+++|
T Consensus       179 VLg~~~S~~~e  189 (189)
T 1ual_A          179 VLGKQASAEED  189 (189)
T ss_dssp             CC---------
T ss_pred             CCCCCCCCCCC
T ss_conf             46773222102


No 2  
>>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp} (A:1-192)
Probab=100.00  E-value=0  Score=546.05  Aligned_cols=169  Identities=40%  Similarity=0.724  Sum_probs=164.9

Q ss_pred             CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC
Q ss_conf             54589985183564456403367999974965999960256358985135311306888617750588999998753114
Q gi|254780714|r    2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT   81 (236)
Q Consensus         2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~   81 (236)
                      .|+|+|+|||||||++++++||+|||+++|+|+++++|+|||+.||||+|||+||||||||||||||+++|++++++.  
T Consensus        24 ~Mri~vlTLFPe~f~~~l~~siigrA~~~gli~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~ai~~~~~~--  101 (192)
T 3ky7_A           24 AMKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVT--  101 (192)
T ss_dssp             -CEEEEEESCGGGGHHHHHHTTTHHHHHTTSCEEEEEEGGGGC-CCSCCSEECCTTCCSSCEECHHHHHHHHHHTTCC--
T ss_pred             CEEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCC--
T ss_conf             608999998857502032154899999869658998773651789887657886799984089711677877754403--


Q ss_pred             CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf             77830899879987604899999730287599941501144899974045310033401117327799999999985057
Q gi|254780714|r   82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG  161 (236)
Q Consensus        82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG  161 (236)
                       ++++||||||||++|||++|++||++++|+|+|||||||||||+++++|+|||||||||||||+||||++||++||+||
T Consensus       102 -~~~~vi~lSP~G~~~~Q~~a~eLs~~~~liliCGrYEGiDeRv~~~~vd~EiSIGDyVLsGGElaAmviiDav~RllPG  180 (192)
T 3ky7_A          102 -EQARVILMXPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPG  180 (192)
T ss_dssp             -TTSEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCCSCBCHHHHHHTCCEEEESSSSCCSCSHHHHHHHHHHHHTTSCC
T ss_pred             -CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEECCCEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             -6775577899987842878999867998699966634565888876065476402389708569999999999999743


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             467822233440
Q gi|254780714|r  162 VLGNQQSTIHES  173 (236)
Q Consensus       162 vlg~~~S~~~eS  173 (236)
                      ||||++|+.+||
T Consensus       181 VLg~~~S~~~eS  192 (192)
T 3ky7_A          181 VLGNEQSHQDDS  192 (192)
T ss_dssp             ------------
T ss_pred             CCCCCCCCCCCH
T ss_conf             458842034022


No 3  
>>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} (A:1-188)
Probab=100.00  E-value=0  Score=541.57  Aligned_cols=168  Identities=46%  Similarity=0.880  Sum_probs=163.5

Q ss_pred             CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC
Q ss_conf             54589985183564456403367999974965999960256358985135311306888617750588999998753114
Q gi|254780714|r    2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT   81 (236)
Q Consensus         2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~   81 (236)
                      .|+|+|+|||||||++++++||+|||+++|+|++++||+|||+.||||+|||+||||||||||||||+++|+++++++  
T Consensus        21 ~M~i~vlTLFPe~f~~~l~~si~grA~~~gl~~i~~~n~Rdf~~dkhr~VDD~PyGGG~GMvmk~ePi~~al~~~~~~--   98 (188)
T 3knu_A           21 SMIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFANNKHNTVDDTPYGGGPGMLLRADVLGRCIDEVLSL--   98 (188)
T ss_dssp             CEEEEEEESCGGGCSGGGGSHHHHHHHHHTSEEEEEEEGGGGC-----CCEECCTTCCSSCEECHHHHHHHHHHHHHH--
T ss_pred             CEEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHC--
T ss_conf             549999998857613030051899999869668998881553789997775565789987255669999999987622--


Q ss_pred             CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf             77830899879987604899999730287599941501144899974045310033401117327799999999985057
Q gi|254780714|r   82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG  161 (236)
Q Consensus        82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG  161 (236)
                      .++.+||||||||++|||++|++||++++|+|||||||||||||+|+++|+|||||||||||||+||||++||++||+||
T Consensus        99 ~~~~~vi~lSP~Gk~f~Q~~a~eLa~~~~liliCGrYEGiDeRv~e~~vdeEiSIGDyVLsGGElaAmvliDav~RliPG  178 (188)
T 3knu_A           99 HPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGIDERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVPG  178 (188)
T ss_dssp             CTTCEEEEEEEEEEECCHHHHHHHHTCSEEEEEECCTTCBCHHHHHHHTCEEEESSSSCCSSSHHHHHHHHHHHHTTSTT
T ss_pred             CCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECEEEECHHHHHCCCCCEEEECCEEEECCCCEEEEHHHHHHHHCCC
T ss_conf             78865998358985201300000125773699971301000344513565156403689845761143217889874777


Q ss_pred             CCCCCCCCCC
Q ss_conf             4678222334
Q gi|254780714|r  162 VLGNQQSTIH  171 (236)
Q Consensus       162 vlg~~~S~~~  171 (236)
                      ||||++|+++
T Consensus       179 VLg~~~S~~E  188 (188)
T 3knu_A          179 VIGNAESLKQ  188 (188)
T ss_dssp             TC--------
T ss_pred             CCCCCCCCCH
T ss_conf             6766554410


No 4  
>>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} (A:1-168)
Probab=100.00  E-value=0  Score=542.31  Aligned_cols=167  Identities=65%  Similarity=1.106  Sum_probs=162.9

Q ss_pred             CCEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHC
Q ss_conf             95458998518356445640336799997496599996025635898513531130688861775058899999875311
Q gi|254780714|r    1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQY   80 (236)
Q Consensus         1 M~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~   80 (236)
                      |.|+|+|+|||||||++++++||+|||+++|+|++++||+|||+.|||++|||+||||||||||||||+++|++++++  
T Consensus         2 M~m~i~vlTlFPe~f~~~l~~sI~grA~~~gl~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~--   79 (168)
T 3ief_A            2 MKFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFALDKHHSVDDTPAGGGAGMVMRADVLAAALDSCPN--   79 (168)
T ss_dssp             -CEEEEEEESCGGGSSGGGGSHHHHHHHHTTSEEEEEEEGGGGC-----CCEECCTTCCSSCEECHHHHHHHHTTSCC--
T ss_pred             CCCCCEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCC--
T ss_conf             844323888774552112011289999987975899875022258878766888779997638628999999996434--


Q ss_pred             CCCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHC
Q ss_conf             47783089987998760489999973028759994150114489997404531003340111732779999999998505
Q gi|254780714|r   81 THEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLP  160 (236)
Q Consensus        81 ~~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~Rlip  160 (236)
                         +.++|||||||++|||+.|++||+++||+|+|||||||||||+++++|+|||||||||||||+||||++||++||+|
T Consensus        80 ---~~~vi~lSP~G~~f~Q~~a~ela~~~~liliCGrYEGiDeRv~~~~vd~EiSiGDyVLsGGElaAmviiDav~RliP  156 (168)
T 3ief_A           80 ---DSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLP  156 (168)
T ss_dssp             ---CSCEEEEEEEEEECCHHHHHHHTTSSEEEEEECCSSCBBHHHHHHTTCEEEESSSSCCSCHHHHHHHHHHHHHTTST
T ss_pred             ---CCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCEEECCCHHHHHHHHHHHHHHCC
T ss_conf             ---89889989999807999999987799979981564354699986328578750447742852899999999998576


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             746782223344
Q gi|254780714|r  161 GVLGNQQSTIHE  172 (236)
Q Consensus       161 Gvlg~~~S~~~e  172 (236)
                      |||||++|+.+|
T Consensus       157 GVLg~~~S~~~e  168 (168)
T 3ief_A          157 GVMGNEISAKCE  168 (168)
T ss_dssp             TSSSGGGCCSSC
T ss_pred             CCCCCCCCCCCC
T ss_conf             755886414415


No 5  
>>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} (A:1-171)
Probab=100.00  E-value=0  Score=521.01  Aligned_cols=167  Identities=38%  Similarity=0.601  Sum_probs=160.3

Q ss_pred             CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC
Q ss_conf             54589985183564456403367999974965999960256358985135311306888617750588999998753114
Q gi|254780714|r    2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT   81 (236)
Q Consensus         2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~   81 (236)
                      .|+|+|+|||||||++++++||+|||+++|+|+++++|+|||+.  ||+|||+||||||||||||||+++|+++++++  
T Consensus         5 ~m~~~vlTlFPe~f~~~l~~sii~rA~~~gl~~i~~~n~Rd~~k--~k~VDD~pyGGG~GMvm~~ePi~~al~~~~~~--   80 (171)
T 1oy5_A            5 PLRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAP--KGQVDDVPYGGLPGMVLKPEPIYEAYDYVVEN--   80 (171)
T ss_dssp             CEEEEEEESCHHHHHHHTTSHHHHHHHHHTSEEEEEEEGGGGCT--TSCCEECBSSCCSSCEECHHHHHHHHHHHHHH--
T ss_pred             CEEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCC--CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHC--
T ss_conf             85899999885652203224389999986974899854177467--99867785589984289515999999998642--


Q ss_pred             CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf             77830899879987604899999730287599941501144899974045310033401117327799999999985057
Q gi|254780714|r   82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG  161 (236)
Q Consensus        82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG  161 (236)
                      .+++++|||||||++|||++|++||+++||+|||||||||||||+++ +|+|||||||||||||+||||++||++||+||
T Consensus        81 ~~~~~vi~lsP~G~~f~Q~~a~~La~~~~liliCGrYEGiDeRv~~~-~d~EiSIGDyVLtGGElaA~viiDav~RllpG  159 (171)
T 1oy5_A           81 YGKPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGVDERVKKI-VDMEISLGDFILSGGEIVALAVIDAVSRVLPG  159 (171)
T ss_dssp             HCCCEEEEECTTBCCCCHHHHHHHHTCSEEEEEECBTTCBCGGGGGG-CCEECCBCSSCCSBSHHHHHHHHHHHHHTSTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHC-CCEEEEECCEEECCCCHHHHHHHHHHHHHCCC
T ss_conf             68974997075201034887787635997799953632588998745-87498742689708608999999999985788


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             467822233440
Q gi|254780714|r  162 VLGNQQSTIHES  173 (236)
Q Consensus       162 vlg~~~S~~~eS  173 (236)
                      ||||++|+.+||
T Consensus       160 Vlg~~~S~~~eS  171 (171)
T 1oy5_A          160 VLSEPQSIQEDS  171 (171)
T ss_dssp             TSSCC-------
T ss_pred             CCCCCCCCCCCC
T ss_conf             548976553033


No 6  
>>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} (A:190-274)
Probab=99.93  E-value=1.5e-26  Score=196.94  Aligned_cols=63  Identities=49%  Similarity=0.902  Sum_probs=60.9

Q ss_pred             CHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC
Q ss_conf             011488462111672540898898434189989999999999999998768626863056346
Q gi|254780714|r  173 SFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNT  235 (236)
Q Consensus       173 Sf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~  235 (236)
                      ||++|||||||||||++|+|++||+|||||||++|++||+++|+.+|+.+|||||++..++.+
T Consensus         1 SF~~gLLe~P~YTRP~~~~g~~VP~vLlSGnH~~I~~WR~~~sl~rT~~~RPDLl~~~~l~~~   63 (85)
T 1ual_A            1 SFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDE   63 (85)
T ss_dssp             CCSSSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTCCCCHH
T ss_pred             CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHH
T ss_conf             454897672003473301799999521259869999999999999998769789976689999


No 7  
>>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} (A:169-233)
Probab=99.92  E-value=3.5e-26  Score=194.42  Aligned_cols=64  Identities=52%  Similarity=0.943  Sum_probs=61.8

Q ss_pred             CHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC
Q ss_conf             0114884621116725408988984341899899999999999999987686268630563469
Q gi|254780714|r  173 SFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ  236 (236)
Q Consensus       173 Sf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~e  236 (236)
                      ||++|||||||||||++|+|++||+|||||||++|++||+++|+++|+++|||||++..++.+|
T Consensus         1 SF~~~LLe~P~YTrP~~~~g~~VP~vLlsGnH~~I~~wr~~~sl~~T~~~RPDL~~~~~~~~~e   64 (65)
T 3ief_A            1 SFENGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYALYNKNRQK   64 (65)
T ss_dssp             GGGGTCCCCCBCCSSSEETTEECCGGGGSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTC-
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC
T ss_conf             2358988898779965648997896660788899999999999999987796899987540205


No 8  
>>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} (A:189-253)
Probab=99.90  E-value=2.8e-25  Score=188.45  Aligned_cols=64  Identities=45%  Similarity=0.912  Sum_probs=60.2

Q ss_pred             CCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC
Q ss_conf             40114884621116725408988984341899899999999999999987686268630563469
Q gi|254780714|r  172 ESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ  236 (236)
Q Consensus       172 eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~e  236 (236)
                      ||| +|||||||||||++|+|++||+|||||||++|++||+++|+++|+++||||+++..++.+|
T Consensus         1 eSF-~gLLe~P~YTRP~~~~g~~VP~vLlsGnH~~I~~wr~~~sl~~T~~~RPDL~~~~~~~~~~   64 (65)
T 3knu_A            1 ESM-EGSLEYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASLSITAARRPDLLKDRYGENDV   64 (65)
T ss_dssp             --------CCCCCCSCSEETTEECCGGGGTTCHHHHHHHHHHHCC--------------------
T ss_pred             HHH-CCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC
T ss_conf             443-3898898868943128997993321799799999999999999987692998863034557


No 9  
>>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} (A:172-221)
Probab=99.79  E-value=3.7e-21  Score=161.17  Aligned_cols=50  Identities=38%  Similarity=0.698  Sum_probs=49.2

Q ss_pred             HHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             11488462111672540898898434189989999999999999998768
Q gi|254780714|r  174 FENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHR  223 (236)
Q Consensus       174 f~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~R  223 (236)
                      |+||||||||||||++|+|++||+|||||||++|++||+++|+++|+.+|
T Consensus         1 F~~gLLe~P~YTrP~~~~g~~VP~vLlSGnH~~I~~wr~~~a~~~T~~~R   50 (50)
T 1oy5_A            1 FQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKR   50 (50)
T ss_dssp             -------CCCCBSCSEETTEECCGGGTSCSSSTTTHHHHHHHTTTGGGSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             45897789866996623999798544079879999999999999998769


No 10 
>>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp} (A:219-269)
Probab=99.08  E-value=6.6e-11  Score=93.34  Aligned_cols=36  Identities=42%  Similarity=0.652  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC
Q ss_conf             189989999999999999998768626863056346
Q gi|254780714|r  200 NSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNT  235 (236)
Q Consensus       200 lSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~  235 (236)
                      |||||++|++||+++|+++|+.+|||||++..++.+
T Consensus         1 LSG~H~~I~~WR~~~sl~rT~~rRPDLl~~~~l~~~   36 (51)
T 3ky7_A            1 LSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNA   36 (51)
T ss_dssp             GSCCHHHHHHHHHHHHHHHHHHHCHHHHHTSCCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHH
T ss_conf             379879999999999999998669789986699999


No 11 
>>2v3j_A Essential for mitotic growth 1; EMG1, rRNA processing, nuclear protein, ribonucleoprotein, ribosome biogenesis; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=96.75  E-value=0.002  Score=43.86  Aligned_cols=80  Identities=14%  Similarity=0.169  Sum_probs=61.7

Q ss_pred             CCCCCEEEECCCCCEECHH-HHHHHHHCCCEEEEECC-CHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHH
Q ss_conf             7783089987998760489-99997302875999415-011448999740453100334011173277999999999850
Q gi|254780714|r   82 HEDIPRILMSPRGKTLTQK-RVRQLSQKLGVIIVCGR-FEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLL  159 (236)
Q Consensus        82 ~~~~~vI~lSP~Gk~l~Q~-~a~~ls~~~~liliCGr-YEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~Rli  159 (236)
                      ..+..+|.||+.|+.++-. .|+.+.+..++++++|= ..|.++.+. .++++.|||++|.||. +++.+.+++++-|..
T Consensus       172 ~~~~~~I~Ls~~Gk~~~s~efa~~l~~~~~i~~~IGG~~~G~~~~~~-~~ad~~iSLS~~tLsh-~lv~~~L~eqlyRa~  249 (258)
T 2v3j_A          172 PTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAXARGKDNFAD-EYVDEKVGLSNYPLSA-SVACSKFCHGAEDAW  249 (258)
T ss_dssp             CSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSCCTTTTT-TTCSCEEBSCSSCCCH-HHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCC-CCCEEEEEECCCCHHH-HHHHHHHHHHHHHHH
T ss_conf             78987999899876357999998724369869999335589855210-0040589960876689-999999999999985


Q ss_pred             CCCCC
Q ss_conf             57467
Q gi|254780714|r  160 PGVLG  164 (236)
Q Consensus       160 pGvlg  164 (236)
                       +++.
T Consensus       250 -~Il~  253 (258)
T 2v3j_A          250 -NILH  253 (258)
T ss_dssp             -TC--
T ss_pred             -CCCE
T ss_conf             -8530


No 12 
>>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} (A:)
Probab=95.08  E-value=0.047  Score=34.74  Aligned_cols=111  Identities=14%  Similarity=0.160  Sum_probs=77.0

Q ss_pred             CCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECHHHHHHHH-H--
Q ss_conf             9659999602563589851353113068886177505889999987531147783089987998760489999973-0--
Q gi|254780714|r   31 NLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLS-Q--  107 (236)
Q Consensus        31 gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q~~a~~ls-~--  107 (236)
                      +...++++.+++-...++..++              ....+--+.+.++.  ++..+|.|.+.|+.++-....++- +  
T Consensus        29 ~~~~~e~~e~~~~~~~~~~~~~--------------~~~~kE~~~il~~~--~~~~~V~LDe~Gk~l~S~efa~~l~~~~   92 (155)
T 1ns5_A           29 KDXPFELIEIPAGKRGKNADIK--------------RILDKEGEQXLAAA--GKNRIVTLDIPGKPWDTPQLAAELERWK   92 (155)
T ss_dssp             TTSCEEEEEECCCCCCTTCCHH--------------HHHHHHHHHHHHHH--TTSEEEEEEEEEECCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCCCCCHH--------------HHHHHHHHHHHHHC--CCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             7687379994676677622399--------------99999999998618--8884899778997367699999999999


Q ss_pred             --CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHH
Q ss_conf             --2875999415011448999740453100334011173277999999999850
Q gi|254780714|r  108 --KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLL  159 (236)
Q Consensus       108 --~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~Rli  159 (236)
                        ..+++|+-|==.|+++.+... ++..+|+|...++ -|++.++++|-+-|-.
T Consensus        93 ~~g~~i~F~IGG~~G~~~~v~~~-a~~~lSls~mTfp-H~larvvL~EQiYRa~  144 (155)
T 1ns5_A           93 LDGRDVSLLIGGPEGLSPACKAA-AEQSWSLSALTLP-HPLVRVLVAESLYRAW  144 (155)
T ss_dssp             HHCSCEEEEECBTTBCCHHHHHH-CSEEECCCSSCCC-HHHHHHHHHHHHHHHH
T ss_pred             HCCCCEEEEEECCCCCCHHHHHH-CCCEEECCCCCCC-HHHHHHHHHHHHHHHH
T ss_conf             72997799997787658889974-1907866688870-8999999999999999


No 13 
>>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} (A:)
Probab=95.05  E-value=0.091  Score=32.84  Aligned_cols=76  Identities=21%  Similarity=0.321  Sum_probs=62.3

Q ss_pred             CCCCCEEEECCCCCEECHHH-HHHHHH-----CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHH
Q ss_conf             77830899879987604899-999730-----287599941501144899974045310033401117327799999999
Q gi|254780714|r   82 HEDIPRILMSPRGKTLTQKR-VRQLSQ-----KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAV  155 (236)
Q Consensus        82 ~~~~~vI~lSP~Gk~l~Q~~-a~~ls~-----~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai  155 (236)
                      .++..+|.|.++|+.++-.. |..+.+     ..+|+|+-|==.|+|+.+... ++..+|+|...++ =|++.++++|-+
T Consensus        68 ~~~~~~V~LDe~Gk~lsS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~~~~~-a~~~lSLS~mT~p-H~larviL~EQl  145 (167)
T 1to0_A           68 SPDAHVIALAIEGKXKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVXKR-ADEKLSFSKXTFP-HQLXRLILVEQI  145 (167)
T ss_dssp             CTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHH-CSEEEESCSSCCC-HHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH-CCCEEECCCCCCH-HHHHHHHHHHHH
T ss_conf             99984898504011358999999999998558862599976888789889961-4837765567735-799999999999


Q ss_pred             HHHH
Q ss_conf             9850
Q gi|254780714|r  156 VRLL  159 (236)
Q Consensus       156 ~Rli  159 (236)
                      -|-.
T Consensus       146 YRA~  149 (167)
T 1to0_A          146 YRAF  149 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999


No 14 
>>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} (A:)
Probab=94.91  E-value=0.082  Score=33.13  Aligned_cols=136  Identities=14%  Similarity=0.239  Sum_probs=91.9

Q ss_pred             CCEEEEEEEEC--HHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             95458998518--3564456403367999974965999960256358985135311306888617750588999998753
Q gi|254780714|r    1 MTFHASILTLY--PEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVS   78 (236)
Q Consensus         1 M~Mki~IITlF--Pe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~   78 (236)
                      |+|+|.|+++=  +.++....+. -.+|  =++...++++.+++-......                 ....+.-+.+.+
T Consensus         1 m~Mki~Ii~vGK~~~~~~~~i~e-Y~kR--l~~~~~~e~~ei~~~k~~~~~-----------------~~~~~E~~~il~   60 (163)
T 1o6d_A            1 MSLRVRIAVIGKLDGFIKEGIKH-YEKF--LRRFCKPEVLEIKRVHRGSIE-----------------EIVRKETEDLTN   60 (163)
T ss_dssp             --CEEEEEEESCCCHHHHHHHHH-HHHH--HTTTCEEEEEEECCCCCSCHH-----------------HHHHHHHHHHHT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHH-HHHH--HCCCCCCEEEEECCCCCCCHH-----------------HHHHHHHHHHHH
T ss_conf             96579999972808999999999-9998--377688427873146777999-----------------999999999996


Q ss_pred             HCCCCCCCEEEECCCCCEECHHHH-HHHH----HCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHH
Q ss_conf             114778308998799876048999-9973----02875999415011448999740453100334011173277999999
Q gi|254780714|r   79 QYTHEDIPRILMSPRGKTLTQKRV-RQLS----QKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLD  153 (236)
Q Consensus        79 ~~~~~~~~vI~lSP~Gk~l~Q~~a-~~ls----~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~d  153 (236)
                      +. .++..+|.|.++|+.++-... +.+.    +..+++|+-|==.|+++.+.+. ++.-+|++...++ -+++.++++|
T Consensus        61 ~i-~~~~~~V~LDe~Gk~lsS~efA~~i~~~~~~g~~i~FiIGG~~Gl~~~v~~~-a~~~lSlS~mTfp-H~LarliL~E  137 (163)
T 1o6d_A           61 RI-LPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFAK-AHRVFSLSKMTFT-HGMTVLIVLE  137 (163)
T ss_dssp             TC-CTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGGG-CSEEEECCSSCCC-HHHHHHHHHH
T ss_pred             CC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH-CCCEEECCCCCCH-HHHHHHHHHH
T ss_conf             07-9999899974787877829999999999955996799996788889899974-0858957757664-7999999999


Q ss_pred             HHHHHH
Q ss_conf             999850
Q gi|254780714|r  154 AVVRLL  159 (236)
Q Consensus       154 ai~Rli  159 (236)
                      -+-|-.
T Consensus       138 QiYRA~  143 (163)
T 1o6d_A          138 QIFRAF  143 (163)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999


No 15 
>>1vh0_A Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} (A:)
Probab=94.22  E-value=0.089  Score=32.89  Aligned_cols=137  Identities=15%  Similarity=0.251  Sum_probs=89.3

Q ss_pred             CCEEEEEEEEC---HHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHH----H
Q ss_conf             95458998518---3564456403367999974965999960256358985135311306888617750588999----9
Q gi|254780714|r    1 MTFHASILTLY---PEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKA----I   73 (236)
Q Consensus         1 M~Mki~IITlF---Pe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~a----i   73 (236)
                      |+|+|.|+++=   +.++..-.+. -.+|  =+....++++.+.+--..+..+               .-.+...    -
T Consensus         1 ~~Mki~Ii~vGk~~~~~~~~~i~e-Y~kR--l~~~~~~e~~ei~~~k~~~~~~---------------~~~~~~~~~~E~   62 (161)
T 1vh0_A            1 MSLKITILAVGKLKEKYWKQAIAE-YEKR--LGPYTKIDIIEVPDEKAPENMS---------------DKEIEQVKEKEG   62 (161)
T ss_dssp             --CEEEEEEESCCCCHHHHHHHHH-HHHH--HGGGSEEEEEEECCCCCCSSCC---------------HHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHH-HHHH--CCCCCCEEEEEECCCCCCCCCC---------------HHHHHHHHHHHH
T ss_conf             934799999627596799999999-9987--4742482489953545643323---------------544999999988


Q ss_pred             HHHHHHCCCCCCCEEEECCCCCEECHHHHHH-HHH-----CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHH
Q ss_conf             9875311477830899879987604899999-730-----2875999415011448999740453100334011173277
Q gi|254780714|r   74 DHAVSQYTHEDIPRILMSPRGKTLTQKRVRQ-LSQ-----KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPA  147 (236)
Q Consensus        74 ~~~~~~~~~~~~~vI~lSP~Gk~l~Q~~a~~-ls~-----~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~  147 (236)
                      +.+.++. .++..+|.|.+.|+.++-....+ +.+     ..+++|+-|==.|+++.+... ++.-+|++...++ -+++
T Consensus        63 ~~il~~l-~~~~~vi~LD~~Gk~~sS~efA~~i~~~~~~g~~~i~F~IGG~~G~~~~~~~r-a~~~lSlS~mTfp-H~la  139 (161)
T 1vh0_A           63 QRILAKI-KPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR-SNYALSFSKMTFP-HQMM  139 (161)
T ss_dssp             HHHHHTS-CTTSEEEEEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHHH-CSEEECSCSSCCC-HHHH
T ss_pred             HHHHHHC-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH-HHHEEECCCCCCC-HHHH
T ss_conf             9999861-89983899742545678699999999999734785499946866568789987-6560302126662-8999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999985
Q gi|254780714|r  148 ALILLDAVVRL  158 (236)
Q Consensus       148 a~v~~dai~Rl  158 (236)
                      .++++|-+-|-
T Consensus       140 rliL~EQiYRA  150 (161)
T 1vh0_A          140 RVVLIEQVYRA  150 (161)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 16 
>>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} (A:)
Probab=68.61  E-value=5.7  Score=20.96  Aligned_cols=52  Identities=10%  Similarity=0.021  Sum_probs=37.0

Q ss_pred             CCEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEE
Q ss_conf             95458998518356445640336799997496599996025635898513531
Q gi|254780714|r    1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDD   53 (236)
Q Consensus         1 M~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD   53 (236)
                      |||||-||.==|.-....+-..+.. ++++.-++++++|++++..+.....++
T Consensus         4 ~mmKilvi~gS~~g~t~~la~~~~~-~l~~~g~~v~~i~l~~~~~~~~~~~~~   55 (200)
T 2a5l_A            4 SSPYILVLYYSRHGATAEXARQIAR-GVEQGGFEARVRTVPAVSTECEAVAPD   55 (200)
T ss_dssp             -CCEEEEEECCSSSHHHHHHHHHHH-HHHHTTCEEEEEBCCCEEC--------
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHH-HHHHCCCEEEEEECCCCCHHHHHHHHC
T ss_conf             9882899994898189999999999-885449768987436621688998640


No 17 
>>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} (A:1-84,A:161-268)
Probab=65.05  E-value=3.5  Score=22.34  Aligned_cols=84  Identities=13%  Similarity=0.072  Sum_probs=51.5

Q ss_pred             HHHCCCCCCEEEECCCCCCCCEEEE-CHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECH---HHHHHHHHCCCEEEEEC
Q ss_conf             5635898513531130688861775-0588999998753114778308998799876048---99999730287599941
Q gi|254780714|r   41 RNFSTDRHHSVDDTPAGGGAGMVLR-VDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQ---KRVRQLSQKLGVIIVCG  116 (236)
Q Consensus        41 Rdfs~~kh~~VDD~PyGGG~GMVlk-~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q---~~a~~ls~~~~liliCG  116 (236)
                      |+.--.+|+..-=.+|=|-.  |-. +.-+.+.+..+    ..  -.+|-.|+.|+.++.   .+..+..+.+|+.++-|
T Consensus        71 Rk~lfp~~~~Lk~a~YWGy~--Vr~~~~sL~~v~~~~----~~--dl~IgTS~~G~~i~~~~~~l~~~~~~~~~~lvvFG  142 (192)
T 1k3r_A           71 RRKVFPIMRELKHVRYWGYE--VLDTRRNLAESLKTV----GA--DVVVATSRNASPITSILDEVKTRMRGAREAAILFG  142 (192)
T ss_dssp             HHHHCCCCGGGGGGSCCCCE--EEEEEEEHHHHHHHH----CC--SEEEEECTTSCBTTTSHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHCCCCCCCCEECCCCEE--EEEEECCHHHCCCCC----CC--CEEEEECCCCCCCHHHCCCCCCCCCCCCCEEEEEC
T ss_conf             87536898563230667769--997623176563136----99--85999799988520101221234567870899989


Q ss_pred             -CCHHHHHHHHHHCCCC
Q ss_conf             -5011448999740453
Q gi|254780714|r  117 -RFEGIDERIIEARDLE  132 (236)
Q Consensus       117 -rYEGiDeRvid~~~d~  132 (236)
                       -.+|+++...|.+++-
T Consensus       143 gP~~Gl~~~lfD~~iNt  159 (192)
T 1k3r_A          143 GPYKGLPEIDADIWVNT  159 (192)
T ss_dssp             CSSSCCCSCCCSEEEBS
T ss_pred             CCCCCCHHHHCCEEEEC
T ss_conf             86568743426848973


No 18 
>>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc; 2.90A {Bacillus subtilis} (A:198-308,A:406-481)
Probab=48.28  E-value=7.2  Score=20.26  Aligned_cols=85  Identities=15%  Similarity=0.353  Sum_probs=61.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCC-CCCCCHHHCC----------CCCCCHHHCCCCHHHHHHHH
Q ss_conf             732779999999998505746782223344011488462-1116725408----------98898434189989999999
Q gi|254780714|r  143 GGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLEF-PQYTRPQIWE----------GLAIPPILNSGDHERIKKWR  211 (236)
Q Consensus       143 GGEl~a~v~~dai~RlipGvlg~~~S~~~eSf~~~lLe~-P~YTrP~~~~----------g~~VP~VLlSGnH~~I~~Wr  211 (236)
                      =|+-++|-|-||-+||....+|-.+-+    .+.|...| |.||-=..+-          --.|.+.+.+||-+.|..|-
T Consensus        88 l~~~~smgiHESQSrf~En~vgRSDvH----Ws~G~fGYFPtY~LG~~~AAQl~~a~~~~~~d~~~~i~~G~~~~i~~WL  163 (187)
T 3hq2_A           88 LSDGASMGIHESQSLFYENFIGRNDVH----WAGGDFGYFPSYALGYMYAAQLKQKMLEDLPEFDALLERGEFHPIKQWL  163 (187)
T ss_dssp             SSSCSCHHHHHHHHHHHHTTTTTSCST----TTTTCTTCTHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCE----EECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHH
T ss_conf             777776205338899999997388532----2067647624899999999999999998677877777518869999999


Q ss_pred             HHHHHHHHHHHCHH-HHHHHC
Q ss_conf             99999999876862-686305
Q gi|254780714|r  212 KEQSFALTKKHRPD-LLSKKG  231 (236)
Q Consensus       212 ~~~s~~~T~~~RPD-L~~~~~  231 (236)
                      +++=-..-...-|+ |+++..
T Consensus       164 ~e~Ih~~G~~~~~~eLi~~~T  184 (187)
T 3hq2_A          164 TEKVHIHGKRKKPLDIIKDAT  184 (187)
T ss_dssp             HHHTTTTTTSSCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHH
T ss_conf             999986225899899999986


No 19 
>>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein structure initiative; 1.85A {Shewanella oneidensis mr-1} (A:1-73)
Probab=48.20  E-value=5.5  Score=21.02  Aligned_cols=25  Identities=24%  Similarity=0.483  Sum_probs=17.5

Q ss_pred             CHHHHHHHHHHCCCCCEEEHHEEEC
Q ss_conf             0114489997404531003340111
Q gi|254780714|r  118 FEGIDERIIEARDLEEISVGDYILS  142 (236)
Q Consensus       118 YEGiDeRvid~~~d~eiSiGDyVLs  142 (236)
                      +-|+-.++--.++++++.+|||||-
T Consensus        44 ~~Gv~ReVsl~Lv~e~v~vGDyVLV   68 (73)
T 3d3r_A           44 TLGVRRDVSSHLXTEPLAIGDYVLI   68 (73)
T ss_dssp             ETTEEEEEECTTBSSCCCTTCEEEE
T ss_pred             CCCEEEEEEHHHCCCCCCCCCEEEE
T ss_conf             7995999982124588889979999


No 20 
>>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* (A:)
Probab=42.06  E-value=27  Score=16.50  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=46.2

Q ss_pred             CCEEEEEEEECHH--HHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             9545899851835--64456403367999974965999960256358985135311306888617750588999998753
Q gi|254780714|r    1 MTFHASILTLYPE--MFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVS   78 (236)
Q Consensus         1 M~Mki~IITlFPe--~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~   78 (236)
                      ||||+-+|.-=|.  =...-+-.-+...+.+..-++++++|++|+..+...   +..+        .++.+...++.+..
T Consensus         1 MmmkilvI~gS~r~~s~t~~l~~~~~~~l~~~~g~~v~~i~l~~~~~~~~~---~~~~--------~~d~~~~~~e~i~~   69 (197)
T 2vzf_A            1 MTYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALL---RGDL--------SNAKLKEAVDATCN   69 (197)
T ss_dssp             CCEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHH---HTCT--------TSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC---CCCC--------CCHHHHHHHHHHHC
T ss_conf             997099998989967679999999999877655986999973457776542---3568--------98899999999970


Q ss_pred             HCCCCCCCEEEECCC
Q ss_conf             114778308998799
Q gi|254780714|r   79 QYTHEDIPRILMSPR   93 (236)
Q Consensus        79 ~~~~~~~~vI~lSP~   93 (236)
                      .    + .+|+-||-
T Consensus        70 A----D-~iI~~sP~   79 (197)
T 2vzf_A           70 A----D-GLIVATPI   79 (197)
T ss_dssp             C----S-EEEEEEEC
T ss_pred             C----C-EEEEEECH
T ss_conf             9----9-79998301


No 21 
>>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} (A:1-225)
Probab=41.37  E-value=27  Score=16.43  Aligned_cols=49  Identities=14%  Similarity=0.094  Sum_probs=33.2

Q ss_pred             CCEEEEEEEECHH--HHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCE
Q ss_conf             9545899851835--6445640336799997496599996025635898513
Q gi|254780714|r    1 MTFHASILTLYPE--MFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHS   50 (236)
Q Consensus         1 M~Mki~IITlFPe--~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~   50 (236)
                      ||||+-||.-=|.  -+..-+-.-++..+.+. -++++.+||+|+..+....
T Consensus         1 mmmkiLiI~gSpr~~s~t~~l~~~~~~~l~~~-g~~~~~i~l~~~~~~~~~~   51 (225)
T 1d4a_A            1 VGRRALIVLAHSERTSFNYAMKEAAAAALKKK-GWEVVESDLYAMNFNPIIS   51 (225)
T ss_dssp             CCCEEEEEECCSCTTSHHHHHHHHHHHHHHHT-TCEEEEEETTTTTCCCCCC
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCC
T ss_conf             98659999818998656999986207899978-8979999871158886578


No 22 
>>1huf_A Tyrosine phosphatase YOPH; helical bundle, beta hairpin, hydrolase; 2.00A {Yersinia pestis} (A:)
Probab=40.57  E-value=17  Score=17.75  Aligned_cols=29  Identities=31%  Similarity=0.484  Sum_probs=23.3

Q ss_pred             CCCCCEEEECHHHHHHHHHHHHHCCCCCC
Q ss_conf             68886177505889999987531147783
Q gi|254780714|r   57 GGGAGMVLRVDILGKAIDHAVSQYTHEDI   85 (236)
Q Consensus        57 GGG~GMVlk~epi~~ai~~~~~~~~~~~~   85 (236)
                      |||.||.|+..-+..-+..+.+..+++..
T Consensus         1 ~~~~gm~l~i~~Lh~qvs~laq~~~G~~~   29 (140)
T 1huf_A            1 GGGGGMNLSLSDLHRQVSRLVQQESGDCT   29 (140)
T ss_dssp             -------CCHHHHHHHHHHHHHTTTTTSB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             97320226689999999999887537864


No 23 
>>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A* (A:110-328,A:442-525)
Probab=39.09  E-value=30  Score=16.20  Aligned_cols=103  Identities=16%  Similarity=0.179  Sum_probs=67.8

Q ss_pred             CCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEE
Q ss_conf             06888617750588999998753114778308998799876048999997302875999415011448999740453100
Q gi|254780714|r   56 AGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEIS  135 (236)
Q Consensus        56 yGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiS  135 (236)
                      |.--|--- |+.-....+....++..+.+.+.||=|-.=..=-+...++|+++.+|++|--.-.--|.-....+- .|++
T Consensus        31 FSn~P~~f-m~~e~q~~L~e~reqNp~~~i~LVYsSt~Ln~~a~~ql~~faken~IsllDids~e~e~~L~nlak-aEL~  108 (303)
T 3jsz_A           31 FSIKPELF-XPSKQQEALKRRREQYPGCKIRLIYSSSLLNPEANRQXKAFAKKQNISLIDIDSVKTDSPLYPLIK-AELA  108 (303)
T ss_dssp             CCSSTTCS-SCHHHHHHHHHHHHHCTTCEEEEEECSTTSCHHHHHHHHHHHHHTTEEEEEGGGCCCCCTHHHHHH-HHHH
T ss_pred             EECCHHHH-CCHHHHHHHHHHHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HHHH
T ss_conf             73786674-267789999999975899829999611323889999999998756933763211332177887789-9999


Q ss_pred             EHHEEECCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             3340111732779999999998505746782
Q gi|254780714|r  136 VGDYILSGGEPAALILLDAVVRLLPGVLGNQ  166 (236)
Q Consensus       136 iGDyVLsGGEl~a~v~~dai~RlipGvlg~~  166 (236)
                      -   .=+||-+||+-   -++|-++++.+..
T Consensus       109 n---Lg~GGN~AaAS---DIvRWispi~~~g  133 (303)
T 3jsz_A          109 N---LGXGGNPAAAS---DLCRWIPELFNEG  133 (303)
T ss_dssp             T---TTTTCCHHHHH---HHHTTCTTTCSSE
T ss_pred             H---HCCCCCHHHHH---HHHHHHHHHCCCC
T ss_conf             7---33689778777---7888647762666


No 24 
>>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} (A:1-234)
Probab=37.87  E-value=28  Score=16.38  Aligned_cols=74  Identities=11%  Similarity=0.008  Sum_probs=58.5

Q ss_pred             CCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEEC-------CCCHHHHHHHHHHH
Q ss_conf             83089987998760489999973028759994150114489997404531003340111-------73277999999999
Q gi|254780714|r   84 DIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILS-------GGEPAALILLDAVV  156 (236)
Q Consensus        84 ~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLs-------GGEl~a~v~~dai~  156 (236)
                      ...+++.++.-+.-+-+..+++.+....+.+.|=|.+.-.|+.+..-..-+.+|++..+       +|.++---+++.+-
T Consensus         8 ~~~~~~~~~~~~~~~~~~lr~~~~~~~~i~~~~~~D~~sA~i~~~~g~~ai~~s~~~~a~~~G~~D~~~l~~~e~~~~~~   87 (234)
T 1oy0_A            8 GANTPGGSGPRTKIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVR   87 (234)
T ss_dssp             ----------CCCCCHHHHHHHHHHTCCEEEEECCSHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             99999888998774699999998679948999568999999999759988997674486405776777678899999999


Q ss_pred             H
Q ss_conf             8
Q gi|254780714|r  157 R  157 (236)
Q Consensus       157 R  157 (236)
                      |
T Consensus        88 ~   88 (234)
T 1oy0_A           88 G   88 (234)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 25 
>>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} (A:1-75)
Probab=31.66  E-value=14  Score=18.37  Aligned_cols=13  Identities=23%  Similarity=0.373  Sum_probs=10.3

Q ss_pred             CCEEEHHEEECCC
Q ss_conf             3100334011173
Q gi|254780714|r  132 EEISVGDYILSGG  144 (236)
Q Consensus       132 ~eiSiGDyVLsGG  144 (236)
                      .|+++|||||.--
T Consensus        40 ~ev~vGD~VLVH~   52 (75)
T 2ot2_A           40 GQPRVGQWVLVHV   52 (75)
T ss_dssp             SCBCTTCEEEEET
T ss_pred             CCCCCCCEEEEEH
T ss_conf             6467688999963


No 26 
>>1xew_Y SMC protein; structural maintenance of chromosomes, ABC-atpases, condensin, cohesin, cell cycle; 2.00A {Pyrococcus furiosus} (Y:1-85)
Probab=30.25  E-value=25  Score=16.73  Aligned_cols=22  Identities=36%  Similarity=0.542  Sum_probs=17.1

Q ss_pred             EEECCCC--HHHHHHHHHHHHHHC
Q ss_conf             0111732--779999999998505
Q gi|254780714|r  139 YILSGGE--PAALILLDAVVRLLP  160 (236)
Q Consensus       139 yVLsGGE--l~a~v~~dai~Rlip  160 (236)
                      ..|||||  ++|++++=|+-+.-|
T Consensus        62 ~~lSGGEKsl~alallfAl~~~~P   85 (85)
T 1xew_Y           62 EAMSGGEKALTALAFVFAIQKFKP   85 (85)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf             665132047999999999970388


No 27 
>>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix} (A:11-34)
Probab=28.14  E-value=15  Score=18.12  Aligned_cols=12  Identities=42%  Similarity=0.781  Sum_probs=8.7

Q ss_pred             EEHHEEECCCCH
Q ss_conf             033401117327
Q gi|254780714|r  135 SVGDYILSGGEP  146 (236)
Q Consensus       135 SiGDyVLsGGEl  146 (236)
                      --||||||.|.-
T Consensus         3 lrgdfvlssgrr   14 (24)
T 2yzk_A            3 LRGDFVLSSGRR   14 (24)
T ss_dssp             EEEEEECTTSCE
T ss_pred             EECEEEECCCCC
T ss_conf             928689787463


No 28 
>>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} (A:)
Probab=26.66  E-value=47  Score=14.87  Aligned_cols=35  Identities=17%  Similarity=0.280  Sum_probs=24.4

Q ss_pred             CEECHHHHHHHHH---CCCEEEEECCCHHHHHHHHHHC
Q ss_conf             7604899999730---2875999415011448999740
Q gi|254780714|r   95 KTLTQKRVRQLSQ---KLGVIIVCGRFEGIDERIIEAR  129 (236)
Q Consensus        95 k~l~Q~~a~~ls~---~~~liliCGrYEGiDeRvid~~  129 (236)
                      .+-..+.|++|.+   +.+.+++||-+.|+|+=+-+..
T Consensus        40 ~~~~~~~a~~lg~~La~~g~~ivsGg~~Gim~aa~~ga   77 (195)
T 1rcu_A           40 VSELRDICLELGRTLAKKGYLVFNGGRDGVXELVSQGV   77 (195)
T ss_dssp             TGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHH
T ss_conf             58999999999999998799999487274889999988


No 29 
>>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8} (A:)
Probab=26.53  E-value=47  Score=14.86  Aligned_cols=54  Identities=7%  Similarity=-0.059  Sum_probs=38.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf             05889999987531147783089987998760489999973028759994150114
Q gi|254780714|r   66 VDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI  121 (236)
Q Consensus        66 ~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGi  121 (236)
                      ++...+.+.....+.  +...+|.++=+|-..+++.+..+....--+++|||.-..
T Consensus       121 ~~~~~~~~~~~~~~~--~~d~iIvl~H~g~~~~~~~~~~~~~~giDlvl~GH~H~~  174 (252)
T 2z06_A          121 LDDPFRALDRLLEEE--KADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVP  174 (252)
T ss_dssp             CCCHHHHHHHHHHHC--CCSEEEEEEECSCHHHHHHHHHHHBTTBSEEEEESSCSC
T ss_pred             CCCHHHHHHHHHHHC--CCCEEEEECCCCHHHHHEEEEEECCCCEEEEEECCCCCC
T ss_conf             789899999998616--786699983552154332124760797899971675455


No 30 
>>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* (A:)
Probab=26.41  E-value=48  Score=14.84  Aligned_cols=44  Identities=20%  Similarity=0.297  Sum_probs=31.4

Q ss_pred             EECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEE
Q ss_conf             9602563589851353113068886177505889999987531147783089987998760
Q gi|254780714|r   37 AIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTL   97 (236)
Q Consensus        37 ~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l   97 (236)
                      ++|.|||+-.--...||++            .|.+||+++.+...    .+||+ |.|+-+
T Consensus         2 vvnV~dfGA~gDG~tDdt~------------Aiq~Ai~~a~~~gg----g~v~i-P~GtY~   45 (377)
T 2pyg_A            2 DYNVKDFGALGDGVSDDRA------------SIQAAIDAAYAAGG----GTVYL-PAGEYR   45 (377)
T ss_dssp             CEEGGGGTCCCEEEEECHH------------HHHHHHHHHHHTTS----EEEEE-CSEEEE
T ss_pred             EECCHHCCCCCCCCHHHHH------------HHHHHHHHHHHCCC----CEEEE-CCCEEE
T ss_conf             7330305968989777899------------99999998875699----89999-997789


No 31 
>>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved hypothetical protein, NPPSFA; 2.50A {Pyrococcus horikoshii OT3} (A:)
Probab=24.19  E-value=52  Score=14.57  Aligned_cols=126  Identities=13%  Similarity=0.071  Sum_probs=83.6

Q ss_pred             ECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECH--HHHHHHHHC-CCEEEEECCCHHHHHHHHHHC
Q ss_conf             11306888617750588999998753114778308998799876048--999997302-875999415011448999740
Q gi|254780714|r   53 DTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQ--KRVRQLSQK-LGVIIVCGRFEGIDERIIEAR  129 (236)
Q Consensus        53 D~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q--~~a~~ls~~-~~liliCGrYEGiDeRvid~~  129 (236)
                      +.+.==|+|||+-|+.+.+-++.+.+....   ..++.|++......  ..+..+... ..=|==||+  ||-.-..|+.
T Consensus        65 ~~~~~ig~Gvvi~p~~l~~Ei~~l~~~gv~---~~l~is~ra~iv~p~h~~~d~~~E~~~g~iGTtg~--GIGpay~dk~  139 (339)
T 2d7u_A           65 KARLLIGAGVLVDPEVFFHELEQLKDFNVK---DRVGIDYRCAIIEEKHKQLDRTNGYLHGKIGTTGS--GCGPANADRV  139 (339)
T ss_dssp             SSBEEECTTSCBCHHHHHHHHHHTGGGTGG---GTEEEETTCBBCCHHHHC----------------C--CHHHHHHHHT
T ss_pred             CCEEEECCCEECCHHHHHHHHHHHHHCCCC---CCEEECCHHCCCCCHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHH
T ss_conf             836964896043999999999998641566---73675612214885078875654764468775444--3116788865


Q ss_pred             CCCCEEEHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCHHH
Q ss_conf             453100334011173277999999999850574678222334401148846211167254
Q gi|254780714|r  130 DLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLEFPQYTRPQI  189 (236)
Q Consensus       130 ~d~eiSiGDyVLsGGEl~a~v~~dai~RlipGvlg~~~S~~~eSf~~~lLe~P~YTrP~~  189 (236)
                      .-..+-++|+-.---.+      .-+.+++..++.+.+++.-|.=+.-||+--+=|-|.+
T Consensus       140 ~R~~ir~~D~~~l~~~i------~D~~~~l~~al~~g~~vlfEGaQG~lLDid~GtYP~V  193 (339)
T 2d7u_A          140 MRKAKQAKDVKELEPYL------TDVAQEINDALDEGSLVLVEGTQGFGLSLYYGTYPYV  193 (339)
T ss_dssp             TTCSCBGGGCSSSSTTE------ECHHHHHHHHHHTTCCEEEEEEEEGGGCTTTSSTTSS
T ss_pred             HCCCCEECHHHCCCCCC------CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf             10011200100236443------6379999999877983998501466413458963114


No 32 
>>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis, metal- binding, purine metabolism, nucleotide-binding, GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens} PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A* 1mf0_A* 1mf1_A* 2dgn_A* (A:)
Probab=23.78  E-value=53  Score=14.52  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=76.4

Q ss_pred             CCCCCCCEEEECHHHHHHHHHHHHHCCC--CCCCEEEECCCCCEECH-----HHHHHHHHCCCE---EEEECCCHHHHHH
Q ss_conf             3068886177505889999987531147--78308998799876048-----999997302875---9994150114489
Q gi|254780714|r   55 PAGGGAGMVLRVDILGKAIDHAVSQYTH--EDIPRILMSPRGKTLTQ-----KRVRQLSQKLGV---IIVCGRFEGIDER  124 (236)
Q Consensus        55 PyGGG~GMVlk~epi~~ai~~~~~~~~~--~~~~vI~lSP~Gk~l~Q-----~~a~~ls~~~~l---iliCGrYEGiDeR  124 (236)
                      +-==|+|||+-|+-+.+-++.+.++.-.  .....++.|++......     ..+.|....++.   +==|||  ||-+-
T Consensus        95 ~~~ig~GvVidp~~L~~Ei~~L~~~gi~v~~~~~rL~Is~ra~ii~P~H~~lD~~~E~~rg~~~~~~iGTTg~--GIGpa  172 (459)
T 2v40_A           95 TAFIGNGVVIHLPGLFEEAEKNVQKGKGLEGWEKRLIISDRAHIVFDFHQAADGIQEQQRQEQAGKNLGTTKK--GIGPV  172 (459)
T ss_dssp             EEEECTTBEEEHHHHHHHHHHHHHHCGGGTTGGGSEEEETTCEEECHHHHHHHHHHHHC------------CC--CHHHH
T ss_pred             EEEECCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC--CCHHH
T ss_conf             0898997898099999999999862998656630032056631278613766798873200234676454465--21366


Q ss_pred             HHHHCCCCCEEEHHEEEC--------------------CCC--HHHHH--HHHHH----------HHHHCCCC-CCCCCC
Q ss_conf             997404531003340111--------------------732--77999--99999----------98505746-782223
Q gi|254780714|r  125 IIEARDLEEISVGDYILS--------------------GGE--PAALI--LLDAV----------VRLLPGVL-GNQQST  169 (236)
Q Consensus       125 vid~~~d~eiSiGDyVLs--------------------GGE--l~a~v--~~dai----------~RlipGvl-g~~~S~  169 (236)
                      ..|+..-.-|.++|..=-                    .-+  +.+++  +....          +.++...+ .+.+++
T Consensus       173 y~dk~~r~gir~~DL~~d~~~l~~kl~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~i~D~~~~l~~al~~~gk~v  252 (459)
T 2v40_A          173 YSSKAARSGLRMCDLVSDFDGFSERFKVLANQYKSIYPTLEIDIEGELQKLKGYMEKIKPMVRDGVYFLYEALHGPPKKI  252 (459)
T ss_dssp             HHHHHHTCCCBHHHHTSCHHHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHSSCCCE
T ss_pred             HHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEE
T ss_conf             77654000000244403477899999999887765324332018899999999998740220220899999997189869


Q ss_pred             CCCCHHCCCCCCCCCCCHHH
Q ss_conf             34401148846211167254
Q gi|254780714|r  170 IHESFENGLLEFPQYTRPQI  189 (236)
Q Consensus       170 ~~eSf~~~lLe~P~YTrP~~  189 (236)
                      .-|.=+.-||+--+=|-|.+
T Consensus       253 LfEGaQG~lLDid~GtyP~V  272 (459)
T 2v40_A          253 LVEGANAALLDIDFGTYPFV  272 (459)
T ss_dssp             EEECCSCGGGCTTTSSTTSS
T ss_pred             EEHHHHHHHHHCCCCCCCCC
T ss_conf             98112467774026736763


No 33 
>>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} (A:1-116)
Probab=23.48  E-value=20  Score=17.36  Aligned_cols=69  Identities=19%  Similarity=0.255  Sum_probs=35.5

Q ss_pred             CCCCCCEEEECHHHHHHHHHHHHHCCC----CCCCEEEECCCCCEECHHH------HHHHHHCCCEEEEECCCHHHHHHH
Q ss_conf             068886177505889999987531147----7830899879987604899------999730287599941501144899
Q gi|254780714|r   56 AGGGAGMVLRVDILGKAIDHAVSQYTH----EDIPRILMSPRGKTLTQKR------VRQLSQKLGVIIVCGRFEGIDERI  125 (236)
Q Consensus        56 yGGG~GMVlk~epi~~ai~~~~~~~~~----~~~~vI~lSP~Gk~l~Q~~------a~~ls~~~~liliCGrYEGiDeRv  125 (236)
                      -|||.||+-+|.-+.+-++.+++-.+.    .++..-|+|-.|..+|.=.      +.+|.+.+.       +.--.+|-
T Consensus         7 hgggggminkpnqf~nhl~~lk~hf~~y~~l~~~f~~y~~~n~~el~~ff~~qf~ki~~lvk~k~-------fktaq~rc   79 (116)
T 1td6_A            7 HGGGGGMINKPNQFVNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFLHQFDKVMELVKQKD-------FKTAQSRC   79 (116)
T ss_dssp             ----------CCCSSTTCSBCCCCCSSHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHTTC-------HHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_conf             03678873681889999999998612299999999886216622689999999999999997500-------78999999


Q ss_pred             HHHCCC
Q ss_conf             974045
Q gi|254780714|r  126 IEARDL  131 (236)
Q Consensus       126 id~~~d  131 (236)
                      .++++.
T Consensus        80 eeela~   85 (116)
T 1td6_A           80 EEELAA   85 (116)
T ss_dssp             HHHTTC
T ss_pred             HHHHCC
T ss_conf             987358


No 34 
>>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A (A:)
Probab=23.38  E-value=23  Score=16.91  Aligned_cols=11  Identities=55%  Similarity=0.909  Sum_probs=9.1

Q ss_pred             ECCCCHHHHHH
Q ss_conf             11732779999
Q gi|254780714|r  141 LSGGEPAALIL  151 (236)
Q Consensus       141 LsGGEl~a~v~  151 (236)
                      |||||+.|.++
T Consensus         8 ltggeivavif   18 (38)
T 2k1k_A            8 LTGGEIVAVIF   18 (38)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCCCEEHHHHH
T ss_conf             76763089999


No 35 
>>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} (A:1-182)
Probab=22.37  E-value=57  Score=14.34  Aligned_cols=49  Identities=18%  Similarity=0.294  Sum_probs=33.4

Q ss_pred             EEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEC
Q ss_conf             99996025635898513531130688861775058899999875311477830899879987604
Q gi|254780714|r   34 SMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLT   98 (236)
Q Consensus        34 ~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~   98 (236)
                      .-.++|.+||+-..-...||++            .+.+||+++.+...    ..+++-|.|.-+.
T Consensus        19 ~~~~~nV~~fGA~gDG~tDdt~------------Aiq~Ai~~~~~~~g----g~~v~~p~G~y~~   67 (182)
T 1h80_A           19 DVNYDLVDDFGANGNDTSDDSN------------ALQRAINAISRKPN----GGTLLIPNGTYHF   67 (182)
T ss_dssp             SEEEEHHHHHCCCTTSSSBCHH------------HHHHHHHHHHTSTT----CEEEEECSSEEEE
T ss_pred             CCCCCHHHHHCCCCCCCCCCHH------------HHHHHHHHHCCCCC----CCEEEECCCCEEE
T ss_conf             4661003220567887765258------------99999887502899----9648843872478


No 36 
>>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A {Plasmodium falciparum} (A:)
Probab=21.53  E-value=59  Score=14.23  Aligned_cols=131  Identities=18%  Similarity=0.203  Sum_probs=71.1

Q ss_pred             ECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECH-----HHHHHH--HHCCCEEEEECCCHHHHHHH
Q ss_conf             11306888617750588999998753114778308998799876048-----999997--30287599941501144899
Q gi|254780714|r   53 DTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQ-----KRVRQL--SQKLGVIIVCGRFEGIDERI  125 (236)
Q Consensus        53 D~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q-----~~a~~l--s~~~~liliCGrYEGiDeRv  125 (236)
                      +.+.==|+|||+-|+.+.+-++.+++..    ...++.|++......     ..+.|.  ++..+=+=-|||  ||-.-.
T Consensus        76 ~~~~vig~GvVidp~~l~~Ei~~L~~~g----~~rl~Is~ra~ii~p~H~~lD~~~E~~r~~g~~~iGTTg~--GIGpay  149 (442)
T 1p9b_A           76 NNISVLGNGMVIHVKSLMEEIESVGGKL----LDRLYLSNKAHILFDIHQIIDSIQETKKLKEGKQIGTTKR--GIGPCY  149 (442)
T ss_dssp             TCEEEECTTCEECHHHHHHHHHHHCTTG----GGGEEEETTSEECCHHHHHHHHHHHHHHHHTTCCCCCCSS--SHHHHH
T ss_pred             CCEEEECCCEEEEHHHHHHHHHHHCCCC----CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCHHHH
T ss_conf             9728988988980999999999850568----8876886986567857887667776541147765566888--786988


Q ss_pred             HHHCCCCCEEEHHEEEC-------------------CCCHHH----HHHHHHHHHH----------HCCCCCCCCCCCCC
Q ss_conf             97404531003340111-------------------732779----9999999985----------05746782223344
Q gi|254780714|r  126 IEARDLEEISVGDYILS-------------------GGEPAA----LILLDAVVRL----------LPGVLGNQQSTIHE  172 (236)
Q Consensus       126 id~~~d~eiSiGDyVLs-------------------GGEl~a----~v~~dai~Rl----------ipGvlg~~~S~~~e  172 (236)
                      .|+..-.-|-++|..-.                   .-++..    --+.+..-++          +...+...+++.-|
T Consensus       150 ~dk~~R~gir~~DL~~~~~l~~kl~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfE  229 (442)
T 1p9b_A          150 STKASRIGIRLGTLKNFENFKNMYSKLIDHLMDLYNITEYDKEKELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIE  229 (442)
T ss_dssp             HHHHTTCCCBGGGGGSHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             97654014412211586789999999998775531233111688999998778985170556899999999879947986


Q ss_pred             CHHCCCCCCCCCCCHHH
Q ss_conf             01148846211167254
Q gi|254780714|r  173 SFENGLLEFPQYTRPQI  189 (236)
Q Consensus       173 Sf~~~lLe~P~YTrP~~  189 (236)
                      .=+.-||+--+=|-|.+
T Consensus       230 GaQG~lLDid~GtYP~V  246 (442)
T 1p9b_A          230 GANAAMLDIDFGTYPYV  246 (442)
T ss_dssp             CCSCGGGCTTTSSTTSS
T ss_pred             CCCEEEECCCCCCCCCC
T ss_conf             14304760466878702


No 37 
>>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain; NMR {Homo sapiens} (A:)
Probab=21.03  E-value=60  Score=14.17  Aligned_cols=18  Identities=22%  Similarity=0.316  Sum_probs=14.4

Q ss_pred             CCCCEEEECCCCCEECHH
Q ss_conf             783089987998760489
Q gi|254780714|r   83 EDIPRILMSPRGKTLTQK  100 (236)
Q Consensus        83 ~~~~vI~lSP~Gk~l~Q~  100 (236)
                      .+.-|+|.||+|+.|-..
T Consensus        29 ~k~DvyY~sP~Gkk~RS~   46 (75)
T 1d9n_A           29 GRSDTYYQSPTGDRIRSK   46 (75)
T ss_dssp             CCCCEEEECSSSCEECST
T ss_pred             CCEEEEEECCCCCEEECH
T ss_conf             722689988999778769


No 38 
>>3l83_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2, protein structure initiative; 1.50A {Methylobacillus flagellatus} (A:)
Probab=20.25  E-value=62  Score=14.06  Aligned_cols=72  Identities=10%  Similarity=-0.001  Sum_probs=50.1

Q ss_pred             CCE-EEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCC--CCEEEECCCCCCCCEEEECHHHHHHHHHHH
Q ss_conf             954-58998518356445640336799997496599996025635898--513531130688861775058899999875
Q gi|254780714|r    1 MTF-HASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDR--HHSVDDTPAGGGAGMVLRVDILGKAIDHAV   77 (236)
Q Consensus         1 M~M-ki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~k--h~~VDD~PyGGG~GMVlk~epi~~ai~~~~   77 (236)
                      |+| +|-||--..     ...++.+.+++++.-+++.++..-+.+.+.  -...|---..|||+.+-...++...+..+.
T Consensus         1 M~~~~iliid~~~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DgiIi~GGp~~~~~~~~~~~~~~~li   75 (250)
T 3l83_A            1 MSLKPVMIIQFSA-----SEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALI   75 (250)
T ss_dssp             ----CEEEEECSS-----SCCCTHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHH
T ss_pred             CCCCEEEEEECCC-----CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             9986499996789-----99805999999848987999978999878778645999999099997778786689999999


No 39 
>>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} (A:10-247)
Probab=20.18  E-value=63  Score=14.05  Aligned_cols=65  Identities=14%  Similarity=0.119  Sum_probs=37.3

Q ss_pred             CEEEECCCCCEECHHHHHHHHHCCCEEEEEC-CCH-HH---HHHHH-HHCCCCCEEEHHEEECCCCHHHHH
Q ss_conf             0899879987604899999730287599941-501-14---48999-740453100334011173277999
Q gi|254780714|r   86 PRILMSPRGKTLTQKRVRQLSQKLGVIIVCG-RFE-GI---DERII-EARDLEEISVGDYILSGGEPAALI  150 (236)
Q Consensus        86 ~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCG-rYE-Gi---DeRvi-d~~~d~eiSiGDyVLsGGEl~a~v  150 (236)
                      .++..+|.|...+.+...+++++.++.+++= =|- |.   +.... ....+--+.-+...++|+....++
T Consensus       115 ~~~~~~~~g~~~~~~~i~~la~~~g~~iivD~a~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~g~~~G~~~  185 (238)
T 2fnu_A          115 AIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVV  185 (238)
T ss_dssp             EEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEE
T ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             11000135643234532121102211110104441486301100476521331134676444210450366


Done!