Query gi|254780714|ref|YP_003065127.1| tRNA (guanine-N(1)-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 236 No_of_seqs 141 out of 1853 Neff 4.7 Searched_HMMs 33803 Date Wed Jun 1 14:25:10 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780714.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ual_A TRNA (guanine-N(1)-)-m 100.0 0 0 545.2 14.5 170 2-172 20-189 (189) 2 >3ky7_A TRNA (guanine-N(1)-)-m 100.0 0 0 546.0 12.9 169 2-173 24-192 (192) 3 >3knu_A TRNA (guanine-N(1)-)-m 100.0 0 0 541.6 14.1 168 2-171 21-188 (188) 4 >3ief_A TRNA (guanine-N(1)-)-m 100.0 0 0 542.3 13.4 167 1-172 2-168 (168) 5 >1oy5_A TRNA (guanine-N(1)-)-m 100.0 0 0 521.0 14.9 167 2-173 5-171 (171) 6 >1ual_A TRNA (guanine-N(1)-)-m 99.9 1.5E-26 4.3E-31 196.9 4.5 63 173-235 1-63 (85) 7 >3ief_A TRNA (guanine-N(1)-)-m 99.9 3.5E-26 1E-30 194.4 5.3 64 173-236 1-64 (65) 8 >3knu_A TRNA (guanine-N(1)-)-m 99.9 2.8E-25 8.3E-30 188.5 1.7 64 172-236 1-64 (65) 9 >1oy5_A TRNA (guanine-N(1)-)-m 99.8 3.7E-21 1.1E-25 161.2 -1.1 50 174-223 1-50 (50) 10 >3ky7_A TRNA (guanine-N(1)-)-m 99.1 6.6E-11 1.9E-15 93.3 3.6 36 200-235 1-36 (51) 11 >2v3j_A Essential for mitotic 96.8 0.002 5.8E-08 43.9 4.5 80 82-164 172-253 (258) 12 >1ns5_A Hypothetical protein Y 95.1 0.047 1.4E-06 34.7 5.3 111 31-159 29-144 (155) 13 >1to0_A Hypothetical UPF0247 p 95.1 0.091 2.7E-06 32.8 6.7 76 82-159 68-149 (167) 14 >1o6d_A Hypothetical UPF0247 p 94.9 0.082 2.4E-06 33.1 6.1 136 1-159 1-143 (163) 15 >1vh0_A Hypothetical UPF0247 p 94.2 0.089 2.6E-06 32.9 5.0 137 1-158 1-150 (161) 16 >2a5l_A Trp repressor binding 68.6 5.7 0.00017 21.0 3.5 52 1-53 4-55 (200) 17 >1k3r_A Conserved protein MT00 65.0 3.5 0.0001 22.3 1.8 84 41-132 71-159 (192) 18 >3hq2_A Bacillus subtilis M32 48.3 7.2 0.00021 20.3 1.1 85 143-231 88-184 (187) 19 >3d3r_A Hydrogenase assembly c 48.2 5.5 0.00016 21.0 0.5 25 118-142 44-68 (73) 20 >2vzf_A NADH-dependent FMN red 42.1 27 0.00079 16.5 4.6 77 1-93 1-79 (197) 21 >1d4a_A DT-diaphorase, quinone 41.4 27 0.00081 16.4 6.6 49 1-50 1-51 (225) 22 >1huf_A Tyrosine phosphatase Y 40.6 17 0.00051 17.7 2.1 29 57-85 1-29 (140) 23 >3jsz_A LGT1, putative unchara 39.1 30 0.00088 16.2 4.6 103 56-166 31-133 (303) 24 >1oy0_A Ketopantoate hydroxyme 37.9 28 0.00082 16.4 2.8 74 84-157 8-88 (234) 25 >2ot2_A Hydrogenase isoenzymes 31.7 14 0.00041 18.4 0.4 13 132-144 40-52 (75) 26 >1xew_Y SMC protein; structura 30.3 25 0.00073 16.7 1.5 22 139-160 62-85 (85) 27 >2yzk_A OPRT, oprtase, orotate 28.1 15 0.00045 18.1 0.1 12 135-146 3-14 (24) 28 >1rcu_A Conserved hypothetical 26.7 47 0.0014 14.9 3.0 35 95-129 40-77 (195) 29 >2z06_A Putative uncharacteriz 26.5 47 0.0014 14.9 3.7 54 66-121 121-174 (252) 30 >2pyg_A Poly(beta-D-mannuronat 26.4 48 0.0014 14.8 3.7 44 37-97 2-45 (377) 31 >2d7u_A Adenylosuccinate synth 24.2 52 0.0015 14.6 4.5 126 53-189 65-193 (339) 32 >2v40_A Adenylosuccinate synth 23.8 53 0.0016 14.5 6.1 133 55-189 95-272 (459) 33 >1td6_A F10_ORF294, hypothetic 23.5 20 0.00059 17.4 0.0 69 56-131 7-85 (116) 34 >2k1k_A Ephrin type-A receptor 23.4 23 0.00069 16.9 0.4 11 141-151 8-18 (38) 35 >1h80_A IOTA-carrageenase; hyd 22.4 57 0.0017 14.3 3.8 49 34-98 19-67 (182) 36 >1p9b_A Adenylosuccinate synth 21.5 59 0.0017 14.2 5.3 131 53-189 76-246 (442) 37 >1d9n_A Methyl-CPG-binding pro 21.0 60 0.0018 14.2 2.3 18 83-100 29-46 (75) 38 >3l83_A Glutamine amido transf 20.3 62 0.0018 14.1 4.1 72 1-77 1-75 (250) 39 >2fnu_A Aminotransferase; prot 20.2 63 0.0019 14.1 2.0 65 86-150 115-185 (238) No 1 >>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} (A:1-189) Probab=100.00 E-value=0 Score=545.22 Aligned_cols=170 Identities=44% Similarity=0.749 Sum_probs=165.2 Q ss_pred CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 54589985183564456403367999974965999960256358985135311306888617750588999998753114 Q gi|254780714|r 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT 81 (236) Q Consensus 2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~ 81 (236) .|+|+|+|||||||++++++||+|||+++|+|++++||||||+.||||+|||+||||||||||||||+++|+++++++. T Consensus 20 ~M~i~vlTLFPe~f~~~l~~siigrA~~~gl~~i~~~nlRdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~- 98 (189) T 1ual_A 20 HMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAA- 98 (189) T ss_dssp CEEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSCCEECHHHHHHHHHHHHHHH- T ss_pred CCEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHC- T ss_conf 7889999988564011222348999998797689988826608898866467857899863152256788999987404- Q ss_pred CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC Q ss_conf 77830899879987604899999730287599941501144899974045310033401117327799999999985057 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG 161 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG 161 (236) .++++||||||||++|||++|++||++++|+|||||||||||||+|+++|+|||||||||||||+||||++|||+||+|| T Consensus 99 ~~~~~vi~lsP~G~~f~Q~~a~~La~~~~liliCGrYEGiDeRv~~~~vd~EiSIGDyVLtGGElaAmviiDav~RliPG 178 (189) T 1ual_A 99 GEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPG 178 (189) T ss_dssp CTTCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHTTSTT T ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEECCEEHHHHHHHHHHCCEEEECCCEEEECCCHHHHHHHHHHHHHHCC T ss_conf 88984662476515550799997513563899965554076688875312363421488736645665568999988447 Q ss_pred CCCCCCCCCCC Q ss_conf 46782223344 Q gi|254780714|r 162 VLGNQQSTIHE 172 (236) Q Consensus 162 vlg~~~S~~~e 172 (236) ||||++|+++| T Consensus 179 VLg~~~S~~~e 189 (189) T 1ual_A 179 VLGKQASAEED 189 (189) T ss_dssp CC--------- T ss_pred CCCCCCCCCCC T ss_conf 46773222102 No 2 >>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp} (A:1-192) Probab=100.00 E-value=0 Score=546.05 Aligned_cols=169 Identities=40% Similarity=0.724 Sum_probs=164.9 Q ss_pred CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 54589985183564456403367999974965999960256358985135311306888617750588999998753114 Q gi|254780714|r 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT 81 (236) Q Consensus 2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~ 81 (236) .|+|+|+|||||||++++++||+|||+++|+|+++++|+|||+.||||+|||+||||||||||||||+++|++++++. T Consensus 24 ~Mri~vlTLFPe~f~~~l~~siigrA~~~gli~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~ai~~~~~~-- 101 (192) T 3ky7_A 24 AMKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVT-- 101 (192) T ss_dssp -CEEEEEESCGGGGHHHHHHTTTHHHHHTTSCEEEEEEGGGGC-CCSCCSEECCTTCCSSCEECHHHHHHHHHHTTCC-- T ss_pred CEEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCC-- T ss_conf 608999998857502032154899999869658998773651789887657886799984089711677877754403-- Q ss_pred CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC Q ss_conf 77830899879987604899999730287599941501144899974045310033401117327799999999985057 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG 161 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG 161 (236) ++++||||||||++|||++|++||++++|+|+|||||||||||+++++|+|||||||||||||+||||++||++||+|| T Consensus 102 -~~~~vi~lSP~G~~~~Q~~a~eLs~~~~liliCGrYEGiDeRv~~~~vd~EiSIGDyVLsGGElaAmviiDav~RllPG 180 (192) T 3ky7_A 102 -EQARVILMXPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPG 180 (192) T ss_dssp -TTSEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCCSCBCHHHHHHTCCEEEESSSSCCSCSHHHHHHHHHHHHTTSCC T ss_pred -CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEECCCEEECCCHHHHHHHHHHHHHHHHC T ss_conf -6775577899987842878999867998699966634565888876065476402389708569999999999999743 Q ss_pred CCCCCCCCCCCC Q ss_conf 467822233440 Q gi|254780714|r 162 VLGNQQSTIHES 173 (236) Q Consensus 162 vlg~~~S~~~eS 173 (236) ||||++|+.+|| T Consensus 181 VLg~~~S~~~eS 192 (192) T 3ky7_A 181 VLGNEQSHQDDS 192 (192) T ss_dssp ------------ T ss_pred CCCCCCCCCCCH T ss_conf 458842034022 No 3 >>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} (A:1-188) Probab=100.00 E-value=0 Score=541.57 Aligned_cols=168 Identities=46% Similarity=0.880 Sum_probs=163.5 Q ss_pred CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 54589985183564456403367999974965999960256358985135311306888617750588999998753114 Q gi|254780714|r 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT 81 (236) Q Consensus 2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~ 81 (236) .|+|+|+|||||||++++++||+|||+++|+|++++||+|||+.||||+|||+||||||||||||||+++|+++++++ T Consensus 21 ~M~i~vlTLFPe~f~~~l~~si~grA~~~gl~~i~~~n~Rdf~~dkhr~VDD~PyGGG~GMvmk~ePi~~al~~~~~~-- 98 (188) T 3knu_A 21 SMIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFANNKHNTVDDTPYGGGPGMLLRADVLGRCIDEVLSL-- 98 (188) T ss_dssp CEEEEEEESCGGGCSGGGGSHHHHHHHHHTSEEEEEEEGGGGC-----CCEECCTTCCSSCEECHHHHHHHHHHHHHH-- T ss_pred CEEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHC-- T ss_conf 549999998857613030051899999869668998881553789997775565789987255669999999987622-- Q ss_pred CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC Q ss_conf 77830899879987604899999730287599941501144899974045310033401117327799999999985057 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG 161 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG 161 (236) .++.+||||||||++|||++|++||++++|+|||||||||||||+|+++|+|||||||||||||+||||++||++||+|| T Consensus 99 ~~~~~vi~lSP~Gk~f~Q~~a~eLa~~~~liliCGrYEGiDeRv~e~~vdeEiSIGDyVLsGGElaAmvliDav~RliPG 178 (188) T 3knu_A 99 HPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGIDERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVPG 178 (188) T ss_dssp CTTCEEEEEEEEEEECCHHHHHHHHTCSEEEEEECCTTCBCHHHHHHHTCEEEESSSSCCSSSHHHHHHHHHHHHTTSTT T ss_pred CCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECEEEECHHHHHCCCCCEEEECCEEEECCCCEEEEHHHHHHHHCCC T ss_conf 78865998358985201300000125773699971301000344513565156403689845761143217889874777 Q ss_pred CCCCCCCCCC Q ss_conf 4678222334 Q gi|254780714|r 162 VLGNQQSTIH 171 (236) Q Consensus 162 vlg~~~S~~~ 171 (236) ||||++|+++ T Consensus 179 VLg~~~S~~E 188 (188) T 3knu_A 179 VIGNAESLKQ 188 (188) T ss_dssp TC-------- T ss_pred CCCCCCCCCH T ss_conf 6766554410 No 4 >>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} (A:1-168) Probab=100.00 E-value=0 Score=542.31 Aligned_cols=167 Identities=65% Similarity=1.106 Sum_probs=162.9 Q ss_pred CCEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHC Q ss_conf 95458998518356445640336799997496599996025635898513531130688861775058899999875311 Q gi|254780714|r 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQY 80 (236) Q Consensus 1 M~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~ 80 (236) |.|+|+|+|||||||++++++||+|||+++|+|++++||+|||+.|||++|||+||||||||||||||+++|++++++ T Consensus 2 M~m~i~vlTlFPe~f~~~l~~sI~grA~~~gl~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~-- 79 (168) T 3ief_A 2 MKFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFALDKHHSVDDTPAGGGAGMVMRADVLAAALDSCPN-- 79 (168) T ss_dssp -CEEEEEEESCGGGSSGGGGSHHHHHHHHTTSEEEEEEEGGGGC-----CCEECCTTCCSSCEECHHHHHHHHTTSCC-- T ss_pred CCCCCEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCC-- T ss_conf 844323888774552112011289999987975899875022258878766888779997638628999999996434-- Q ss_pred CCCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHC Q ss_conf 47783089987998760489999973028759994150114489997404531003340111732779999999998505 Q gi|254780714|r 81 THEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLP 160 (236) Q Consensus 81 ~~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~Rlip 160 (236) +.++|||||||++|||+.|++||+++||+|+|||||||||||+++++|+|||||||||||||+||||++||++||+| T Consensus 80 ---~~~vi~lSP~G~~f~Q~~a~ela~~~~liliCGrYEGiDeRv~~~~vd~EiSiGDyVLsGGElaAmviiDav~RliP 156 (168) T 3ief_A 80 ---DSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLP 156 (168) T ss_dssp ---CSCEEEEEEEEEECCHHHHHHHTTSSEEEEEECCSSCBBHHHHHHTTCEEEESSSSCCSCHHHHHHHHHHHHHTTST T ss_pred ---CCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCEEECCCHHHHHHHHHHHHHHCC T ss_conf ---89889989999807999999987799979981564354699986328578750447742852899999999998576 Q ss_pred CCCCCCCCCCCC Q ss_conf 746782223344 Q gi|254780714|r 161 GVLGNQQSTIHE 172 (236) Q Consensus 161 Gvlg~~~S~~~e 172 (236) |||||++|+.+| T Consensus 157 GVLg~~~S~~~e 168 (168) T 3ief_A 157 GVMGNEISAKCE 168 (168) T ss_dssp TSSSGGGCCSSC T ss_pred CCCCCCCCCCCC T ss_conf 755886414415 No 5 >>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} (A:1-171) Probab=100.00 E-value=0 Score=521.01 Aligned_cols=167 Identities=38% Similarity=0.601 Sum_probs=160.3 Q ss_pred CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 54589985183564456403367999974965999960256358985135311306888617750588999998753114 Q gi|254780714|r 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT 81 (236) Q Consensus 2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~ 81 (236) .|+|+|+|||||||++++++||+|||+++|+|+++++|+|||+. ||+|||+||||||||||||||+++|+++++++ T Consensus 5 ~m~~~vlTlFPe~f~~~l~~sii~rA~~~gl~~i~~~n~Rd~~k--~k~VDD~pyGGG~GMvm~~ePi~~al~~~~~~-- 80 (171) T 1oy5_A 5 PLRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAP--KGQVDDVPYGGLPGMVLKPEPIYEAYDYVVEN-- 80 (171) T ss_dssp CEEEEEEESCHHHHHHHTTSHHHHHHHHHTSEEEEEEEGGGGCT--TSCCEECBSSCCSSCEECHHHHHHHHHHHHHH-- T ss_pred CEEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCC--CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHC-- T ss_conf 85899999885652203224389999986974899854177467--99867785589984289515999999998642-- Q ss_pred CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC Q ss_conf 77830899879987604899999730287599941501144899974045310033401117327799999999985057 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG 161 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG 161 (236) .+++++|||||||++|||++|++||+++||+|||||||||||||+++ +|+|||||||||||||+||||++||++||+|| T Consensus 81 ~~~~~vi~lsP~G~~f~Q~~a~~La~~~~liliCGrYEGiDeRv~~~-~d~EiSIGDyVLtGGElaA~viiDav~RllpG 159 (171) T 1oy5_A 81 YGKPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGVDERVKKI-VDMEISLGDFILSGGEIVALAVIDAVSRVLPG 159 (171) T ss_dssp HCCCEEEEECTTBCCCCHHHHHHHHTCSEEEEEECBTTCBCGGGGGG-CCEECCBCSSCCSBSHHHHHHHHHHHHHTSTT T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHC-CCEEEEECCEEECCCCHHHHHHHHHHHHHCCC T ss_conf 68974997075201034887787635997799953632588998745-87498742689708608999999999985788 Q ss_pred CCCCCCCCCCCC Q ss_conf 467822233440 Q gi|254780714|r 162 VLGNQQSTIHES 173 (236) Q Consensus 162 vlg~~~S~~~eS 173 (236) ||||++|+.+|| T Consensus 160 Vlg~~~S~~~eS 171 (171) T 1oy5_A 160 VLSEPQSIQEDS 171 (171) T ss_dssp TSSCC------- T ss_pred CCCCCCCCCCCC T ss_conf 548976553033 No 6 >>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} (A:190-274) Probab=99.93 E-value=1.5e-26 Score=196.94 Aligned_cols=63 Identities=49% Similarity=0.902 Sum_probs=60.9 Q ss_pred CHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC Q ss_conf 011488462111672540898898434189989999999999999998768626863056346 Q gi|254780714|r 173 SFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNT 235 (236) Q Consensus 173 Sf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~ 235 (236) ||++|||||||||||++|+|++||+|||||||++|++||+++|+.+|+.+|||||++..++.+ T Consensus 1 SF~~gLLe~P~YTRP~~~~g~~VP~vLlSGnH~~I~~WR~~~sl~rT~~~RPDLl~~~~l~~~ 63 (85) T 1ual_A 1 SFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDE 63 (85) T ss_dssp CCSSSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTCCCCHH T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHH T ss_conf 454897672003473301799999521259869999999999999998769789976689999 No 7 >>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} (A:169-233) Probab=99.92 E-value=3.5e-26 Score=194.42 Aligned_cols=64 Identities=52% Similarity=0.943 Sum_probs=61.8 Q ss_pred CHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC Q ss_conf 0114884621116725408988984341899899999999999999987686268630563469 Q gi|254780714|r 173 SFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ 236 (236) Q Consensus 173 Sf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~e 236 (236) ||++|||||||||||++|+|++||+|||||||++|++||+++|+++|+++|||||++..++.+| T Consensus 1 SF~~~LLe~P~YTrP~~~~g~~VP~vLlsGnH~~I~~wr~~~sl~~T~~~RPDL~~~~~~~~~e 64 (65) T 3ief_A 1 SFENGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYALYNKNRQK 64 (65) T ss_dssp GGGGTCCCCCBCCSSSEETTEECCGGGGSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTC- T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC T ss_conf 2358988898779965648997896660788899999999999999987796899987540205 No 8 >>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} (A:189-253) Probab=99.90 E-value=2.8e-25 Score=188.45 Aligned_cols=64 Identities=45% Similarity=0.912 Sum_probs=60.2 Q ss_pred CCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC Q ss_conf 40114884621116725408988984341899899999999999999987686268630563469 Q gi|254780714|r 172 ESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ 236 (236) Q Consensus 172 eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~e 236 (236) ||| +|||||||||||++|+|++||+|||||||++|++||+++|+++|+++||||+++..++.+| T Consensus 1 eSF-~gLLe~P~YTRP~~~~g~~VP~vLlsGnH~~I~~wr~~~sl~~T~~~RPDL~~~~~~~~~~ 64 (65) T 3knu_A 1 ESM-EGSLEYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASLSITAARRPDLLKDRYGENDV 64 (65) T ss_dssp --------CCCCCCSCSEETTEECCGGGGTTCHHHHHHHHHHHCC-------------------- T ss_pred HHH-CCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC T ss_conf 443-3898898868943128997993321799799999999999999987692998863034557 No 9 >>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} (A:172-221) Probab=99.79 E-value=3.7e-21 Score=161.17 Aligned_cols=50 Identities=38% Similarity=0.698 Sum_probs=49.2 Q ss_pred HHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 11488462111672540898898434189989999999999999998768 Q gi|254780714|r 174 FENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHR 223 (236) Q Consensus 174 f~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~R 223 (236) |+||||||||||||++|+|++||+|||||||++|++||+++|+++|+.+| T Consensus 1 F~~gLLe~P~YTrP~~~~g~~VP~vLlSGnH~~I~~wr~~~a~~~T~~~R 50 (50) T 1oy5_A 1 FQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKR 50 (50) T ss_dssp -------CCCCBSCSEETTEECCGGGTSCSSSTTTHHHHHHHTTTGGGSC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 45897789866996623999798544079879999999999999998769 No 10 >>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp} (A:219-269) Probab=99.08 E-value=6.6e-11 Score=93.34 Aligned_cols=36 Identities=42% Similarity=0.652 Sum_probs=33.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC Q ss_conf 189989999999999999998768626863056346 Q gi|254780714|r 200 NSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNT 235 (236) Q Consensus 200 lSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~ 235 (236) |||||++|++||+++|+++|+.+|||||++..++.+ T Consensus 1 LSG~H~~I~~WR~~~sl~rT~~rRPDLl~~~~l~~~ 36 (51) T 3ky7_A 1 LSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNA 36 (51) T ss_dssp GSCCHHHHHHHHHHHHHHHHHHHCHHHHHTSCCCHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHH T ss_conf 379879999999999999998669789986699999 No 11 >>2v3j_A Essential for mitotic growth 1; EMG1, rRNA processing, nuclear protein, ribonucleoprotein, ribosome biogenesis; 2.00A {Saccharomyces cerevisiae} (A:) Probab=96.75 E-value=0.002 Score=43.86 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=61.7 Q ss_pred CCCCCEEEECCCCCEECHH-HHHHHHHCCCEEEEECC-CHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHH Q ss_conf 7783089987998760489-99997302875999415-011448999740453100334011173277999999999850 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQK-RVRQLSQKLGVIIVCGR-FEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLL 159 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~-~a~~ls~~~~liliCGr-YEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~Rli 159 (236) ..+..+|.||+.|+.++-. .|+.+.+..++++++|= ..|.++.+. .++++.|||++|.||. +++.+.+++++-|.. T Consensus 172 ~~~~~~I~Ls~~Gk~~~s~efa~~l~~~~~i~~~IGG~~~G~~~~~~-~~ad~~iSLS~~tLsh-~lv~~~L~eqlyRa~ 249 (258) T 2v3j_A 172 PTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAXARGKDNFAD-EYVDEKVGLSNYPLSA-SVACSKFCHGAEDAW 249 (258) T ss_dssp CSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSCCTTTTT-TTCSCEEBSCSSCCCH-HHHHHHHHHHHHHHT T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCC-CCCEEEEEECCCCHHH-HHHHHHHHHHHHHHH T ss_conf 78987999899876357999998724369869999335589855210-0040589960876689-999999999999985 Q ss_pred CCCCC Q ss_conf 57467 Q gi|254780714|r 160 PGVLG 164 (236) Q Consensus 160 pGvlg 164 (236) +++. T Consensus 250 -~Il~ 253 (258) T 2v3j_A 250 -NILH 253 (258) T ss_dssp -TC-- T ss_pred -CCCE T ss_conf -8530 No 12 >>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} (A:) Probab=95.08 E-value=0.047 Score=34.74 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=77.0 Q ss_pred CCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECHHHHHHHH-H-- Q ss_conf 9659999602563589851353113068886177505889999987531147783089987998760489999973-0-- Q gi|254780714|r 31 NLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLS-Q-- 107 (236) Q Consensus 31 gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q~~a~~ls-~-- 107 (236) +...++++.+++-...++..++ ....+--+.+.++. ++..+|.|.+.|+.++-....++- + T Consensus 29 ~~~~~e~~e~~~~~~~~~~~~~--------------~~~~kE~~~il~~~--~~~~~V~LDe~Gk~l~S~efa~~l~~~~ 92 (155) T 1ns5_A 29 KDXPFELIEIPAGKRGKNADIK--------------RILDKEGEQXLAAA--GKNRIVTLDIPGKPWDTPQLAAELERWK 92 (155) T ss_dssp TTSCEEEEEECCCCCCTTCCHH--------------HHHHHHHHHHHHHH--TTSEEEEEEEEEECCCHHHHHHHHHHHH T ss_pred CCCCEEEEEECCCCCCCCCCHH--------------HHHHHHHHHHHHHC--CCCCEEEECCCCCCCCHHHHHHHHHHHH T ss_conf 7687379994676677622399--------------99999999998618--8884899778997367699999999999 Q ss_pred --CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHH Q ss_conf --2875999415011448999740453100334011173277999999999850 Q gi|254780714|r 108 --KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLL 159 (236) Q Consensus 108 --~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~Rli 159 (236) ..+++|+-|==.|+++.+... ++..+|+|...++ -|++.++++|-+-|-. T Consensus 93 ~~g~~i~F~IGG~~G~~~~v~~~-a~~~lSls~mTfp-H~larvvL~EQiYRa~ 144 (155) T 1ns5_A 93 LDGRDVSLLIGGPEGLSPACKAA-AEQSWSLSALTLP-HPLVRVLVAESLYRAW 144 (155) T ss_dssp HHCSCEEEEECBTTBCCHHHHHH-CSEEECCCSSCCC-HHHHHHHHHHHHHHHH T ss_pred HCCCCEEEEEECCCCCCHHHHHH-CCCEEECCCCCCC-HHHHHHHHHHHHHHHH T ss_conf 72997799997787658889974-1907866688870-8999999999999999 No 13 >>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} (A:) Probab=95.05 E-value=0.091 Score=32.84 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=62.3 Q ss_pred CCCCCEEEECCCCCEECHHH-HHHHHH-----CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHH Q ss_conf 77830899879987604899-999730-----287599941501144899974045310033401117327799999999 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQKR-VRQLSQ-----KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAV 155 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~~-a~~ls~-----~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai 155 (236) .++..+|.|.++|+.++-.. |..+.+ ..+|+|+-|==.|+|+.+... ++..+|+|...++ =|++.++++|-+ T Consensus 68 ~~~~~~V~LDe~Gk~lsS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~~~~~-a~~~lSLS~mT~p-H~larviL~EQl 145 (167) T 1to0_A 68 SPDAHVIALAIEGKXKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVXKR-ADEKLSFSKXTFP-HQLXRLILVEQI 145 (167) T ss_dssp CTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHH-CSEEEESCSSCCC-HHHHHHHHHHHH T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH-CCCEEECCCCCCH-HHHHHHHHHHHH T ss_conf 99984898504011358999999999998558862599976888789889961-4837765567735-799999999999 Q ss_pred HHHH Q ss_conf 9850 Q gi|254780714|r 156 VRLL 159 (236) Q Consensus 156 ~Rli 159 (236) -|-. T Consensus 146 YRA~ 149 (167) T 1to0_A 146 YRAF 149 (167) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 14 >>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} (A:) Probab=94.91 E-value=0.082 Score=33.13 Aligned_cols=136 Identities=14% Similarity=0.239 Sum_probs=91.9 Q ss_pred CCEEEEEEEEC--HHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHH Q ss_conf 95458998518--3564456403367999974965999960256358985135311306888617750588999998753 Q gi|254780714|r 1 MTFHASILTLY--PEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVS 78 (236) Q Consensus 1 M~Mki~IITlF--Pe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~ 78 (236) |+|+|.|+++= +.++....+. -.+| =++...++++.+++-...... ....+.-+.+.+ T Consensus 1 m~Mki~Ii~vGK~~~~~~~~i~e-Y~kR--l~~~~~~e~~ei~~~k~~~~~-----------------~~~~~E~~~il~ 60 (163) T 1o6d_A 1 MSLRVRIAVIGKLDGFIKEGIKH-YEKF--LRRFCKPEVLEIKRVHRGSIE-----------------EIVRKETEDLTN 60 (163) T ss_dssp --CEEEEEEESCCCHHHHHHHHH-HHHH--HTTTCEEEEEEECCCCCSCHH-----------------HHHHHHHHHHHT T ss_pred CCCEEEEEEECCCCHHHHHHHHH-HHHH--HCCCCCCEEEEECCCCCCCHH-----------------HHHHHHHHHHHH T ss_conf 96579999972808999999999-9998--377688427873146777999-----------------999999999996 Q ss_pred HCCCCCCCEEEECCCCCEECHHHH-HHHH----HCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHH Q ss_conf 114778308998799876048999-9973----02875999415011448999740453100334011173277999999 Q gi|254780714|r 79 QYTHEDIPRILMSPRGKTLTQKRV-RQLS----QKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLD 153 (236) Q Consensus 79 ~~~~~~~~vI~lSP~Gk~l~Q~~a-~~ls----~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~d 153 (236) +. .++..+|.|.++|+.++-... +.+. +..+++|+-|==.|+++.+.+. ++.-+|++...++ -+++.++++| T Consensus 61 ~i-~~~~~~V~LDe~Gk~lsS~efA~~i~~~~~~g~~i~FiIGG~~Gl~~~v~~~-a~~~lSlS~mTfp-H~LarliL~E 137 (163) T 1o6d_A 61 RI-LPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFAK-AHRVFSLSKMTFT-HGMTVLIVLE 137 (163) T ss_dssp TC-CTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGGG-CSEEEECCSSCCC-HHHHHHHHHH T ss_pred CC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH-CCCEEECCCCCCH-HHHHHHHHHH T ss_conf 07-9999899974787877829999999999955996799996788889899974-0858957757664-7999999999 Q ss_pred HHHHHH Q ss_conf 999850 Q gi|254780714|r 154 AVVRLL 159 (236) Q Consensus 154 ai~Rli 159 (236) -+-|-. T Consensus 138 QiYRA~ 143 (163) T 1o6d_A 138 QIFRAF 143 (163) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 15 >>1vh0_A Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} (A:) Probab=94.22 E-value=0.089 Score=32.89 Aligned_cols=137 Identities=15% Similarity=0.251 Sum_probs=89.3 Q ss_pred CCEEEEEEEEC---HHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHH----H Q ss_conf 95458998518---3564456403367999974965999960256358985135311306888617750588999----9 Q gi|254780714|r 1 MTFHASILTLY---PEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKA----I 73 (236) Q Consensus 1 M~Mki~IITlF---Pe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~a----i 73 (236) |+|+|.|+++= +.++..-.+. -.+| =+....++++.+.+--..+..+ .-.+... - T Consensus 1 ~~Mki~Ii~vGk~~~~~~~~~i~e-Y~kR--l~~~~~~e~~ei~~~k~~~~~~---------------~~~~~~~~~~E~ 62 (161) T 1vh0_A 1 MSLKITILAVGKLKEKYWKQAIAE-YEKR--LGPYTKIDIIEVPDEKAPENMS---------------DKEIEQVKEKEG 62 (161) T ss_dssp --CEEEEEEESCCCCHHHHHHHHH-HHHH--HGGGSEEEEEEECCCCCCSSCC---------------HHHHHHHHHHHH T ss_pred CCCEEEEEEECCCCCHHHHHHHHH-HHHH--CCCCCCEEEEEECCCCCCCCCC---------------HHHHHHHHHHHH T ss_conf 934799999627596799999999-9987--4742482489953545643323---------------544999999988 Q ss_pred HHHHHHCCCCCCCEEEECCCCCEECHHHHHH-HHH-----CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHH Q ss_conf 9875311477830899879987604899999-730-----2875999415011448999740453100334011173277 Q gi|254780714|r 74 DHAVSQYTHEDIPRILMSPRGKTLTQKRVRQ-LSQ-----KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPA 147 (236) Q Consensus 74 ~~~~~~~~~~~~~vI~lSP~Gk~l~Q~~a~~-ls~-----~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~ 147 (236) +.+.++. .++..+|.|.+.|+.++-....+ +.+ ..+++|+-|==.|+++.+... ++.-+|++...++ -+++ T Consensus 63 ~~il~~l-~~~~~vi~LD~~Gk~~sS~efA~~i~~~~~~g~~~i~F~IGG~~G~~~~~~~r-a~~~lSlS~mTfp-H~la 139 (161) T 1vh0_A 63 QRILAKI-KPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR-SNYALSFSKMTFP-HQMM 139 (161) T ss_dssp HHHHHTS-CTTSEEEEEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHHH-CSEEECSCSSCCC-HHHH T ss_pred HHHHHHC-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH-HHHEEECCCCCCC-HHHH T ss_conf 9999861-89983899742545678699999999999734785499946866568789987-6560302126662-8999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999985 Q gi|254780714|r 148 ALILLDAVVRL 158 (236) Q Consensus 148 a~v~~dai~Rl 158 (236) .++++|-+-|- T Consensus 140 rliL~EQiYRA 150 (161) T 1vh0_A 140 RVVLIEQVYRA 150 (161) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 16 >>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} (A:) Probab=68.61 E-value=5.7 Score=20.96 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=37.0 Q ss_pred CCEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEE Q ss_conf 95458998518356445640336799997496599996025635898513531 Q gi|254780714|r 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDD 53 (236) Q Consensus 1 M~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD 53 (236) |||||-||.==|.-....+-..+.. ++++.-++++++|++++..+.....++ T Consensus 4 ~mmKilvi~gS~~g~t~~la~~~~~-~l~~~g~~v~~i~l~~~~~~~~~~~~~ 55 (200) T 2a5l_A 4 SSPYILVLYYSRHGATAEXARQIAR-GVEQGGFEARVRTVPAVSTECEAVAPD 55 (200) T ss_dssp -CCEEEEEECCSSSHHHHHHHHHHH-HHHHTTCEEEEEBCCCEEC-------- T ss_pred CCCCEEEEEECCCCHHHHHHHHHHH-HHHHCCCEEEEEECCCCCHHHHHHHHC T ss_conf 9882899994898189999999999-885449768987436621688998640 No 17 >>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} (A:1-84,A:161-268) Probab=65.05 E-value=3.5 Score=22.34 Aligned_cols=84 Identities=13% Similarity=0.072 Sum_probs=51.5 Q ss_pred HHHCCCCCCEEEECCCCCCCCEEEE-CHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECH---HHHHHHHHCCCEEEEEC Q ss_conf 5635898513531130688861775-0588999998753114778308998799876048---99999730287599941 Q gi|254780714|r 41 RNFSTDRHHSVDDTPAGGGAGMVLR-VDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQ---KRVRQLSQKLGVIIVCG 116 (236) Q Consensus 41 Rdfs~~kh~~VDD~PyGGG~GMVlk-~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q---~~a~~ls~~~~liliCG 116 (236) |+.--.+|+..-=.+|=|-. |-. +.-+.+.+..+ .. -.+|-.|+.|+.++. .+..+..+.+|+.++-| T Consensus 71 Rk~lfp~~~~Lk~a~YWGy~--Vr~~~~sL~~v~~~~----~~--dl~IgTS~~G~~i~~~~~~l~~~~~~~~~~lvvFG 142 (192) T 1k3r_A 71 RRKVFPIMRELKHVRYWGYE--VLDTRRNLAESLKTV----GA--DVVVATSRNASPITSILDEVKTRMRGAREAAILFG 142 (192) T ss_dssp HHHHCCCCGGGGGGSCCCCE--EEEEEEEHHHHHHHH----CC--SEEEEECTTSCBTTTSHHHHHHHHTTCSEEEEECC T ss_pred HHHHCCCCCCCCEECCCCEE--EEEEECCHHHCCCCC----CC--CEEEEECCCCCCCHHHCCCCCCCCCCCCCEEEEEC T ss_conf 87536898563230667769--997623176563136----99--85999799988520101221234567870899989 Q ss_pred -CCHHHHHHHHHHCCCC Q ss_conf -5011448999740453 Q gi|254780714|r 117 -RFEGIDERIIEARDLE 132 (236) Q Consensus 117 -rYEGiDeRvid~~~d~ 132 (236) -.+|+++...|.+++- T Consensus 143 gP~~Gl~~~lfD~~iNt 159 (192) T 1k3r_A 143 GPYKGLPEIDADIWVNT 159 (192) T ss_dssp CSSSCCCSCCCSEEEBS T ss_pred CCCCCCHHHHCCEEEEC T ss_conf 86568743426848973 No 18 >>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc; 2.90A {Bacillus subtilis} (A:198-308,A:406-481) Probab=48.28 E-value=7.2 Score=20.26 Aligned_cols=85 Identities=15% Similarity=0.353 Sum_probs=61.9 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCC-CCCCCHHHCC----------CCCCCHHHCCCCHHHHHHHH Q ss_conf 732779999999998505746782223344011488462-1116725408----------98898434189989999999 Q gi|254780714|r 143 GGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLEF-PQYTRPQIWE----------GLAIPPILNSGDHERIKKWR 211 (236) Q Consensus 143 GGEl~a~v~~dai~RlipGvlg~~~S~~~eSf~~~lLe~-P~YTrP~~~~----------g~~VP~VLlSGnH~~I~~Wr 211 (236) =|+-++|-|-||-+||....+|-.+-+ .+.|...| |.||-=..+- --.|.+.+.+||-+.|..|- T Consensus 88 l~~~~smgiHESQSrf~En~vgRSDvH----Ws~G~fGYFPtY~LG~~~AAQl~~a~~~~~~d~~~~i~~G~~~~i~~WL 163 (187) T 3hq2_A 88 LSDGASMGIHESQSLFYENFIGRNDVH----WAGGDFGYFPSYALGYMYAAQLKQKMLEDLPEFDALLERGEFHPIKQWL 163 (187) T ss_dssp SSSCSCHHHHHHHHHHHHTTTTTSCST----TTTTCTTCTHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTCCHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCE----EECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHH T ss_conf 777776205338899999997388532----2067647624899999999999999998677877777518869999999 Q ss_pred HHHHHHHHHHHCHH-HHHHHC Q ss_conf 99999999876862-686305 Q gi|254780714|r 212 KEQSFALTKKHRPD-LLSKKG 231 (236) Q Consensus 212 ~~~s~~~T~~~RPD-L~~~~~ 231 (236) +++=-..-...-|+ |+++.. T Consensus 164 ~e~Ih~~G~~~~~~eLi~~~T 184 (187) T 3hq2_A 164 TEKVHIHGKRKKPLDIIKDAT 184 (187) T ss_dssp HHHTTTTTTSSCHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHH T ss_conf 999986225899899999986 No 19 >>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein structure initiative; 1.85A {Shewanella oneidensis mr-1} (A:1-73) Probab=48.20 E-value=5.5 Score=21.02 Aligned_cols=25 Identities=24% Similarity=0.483 Sum_probs=17.5 Q ss_pred CHHHHHHHHHHCCCCCEEEHHEEEC Q ss_conf 0114489997404531003340111 Q gi|254780714|r 118 FEGIDERIIEARDLEEISVGDYILS 142 (236) Q Consensus 118 YEGiDeRvid~~~d~eiSiGDyVLs 142 (236) +-|+-.++--.++++++.+|||||- T Consensus 44 ~~Gv~ReVsl~Lv~e~v~vGDyVLV 68 (73) T 3d3r_A 44 TLGVRRDVSSHLXTEPLAIGDYVLI 68 (73) T ss_dssp ETTEEEEEECTTBSSCCCTTCEEEE T ss_pred CCCEEEEEEHHHCCCCCCCCCEEEE T ss_conf 7995999982124588889979999 No 20 >>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* (A:) Probab=42.06 E-value=27 Score=16.50 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=46.2 Q ss_pred CCEEEEEEEECHH--HHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHH Q ss_conf 9545899851835--64456403367999974965999960256358985135311306888617750588999998753 Q gi|254780714|r 1 MTFHASILTLYPE--MFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVS 78 (236) Q Consensus 1 M~Mki~IITlFPe--~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~ 78 (236) ||||+-+|.-=|. =...-+-.-+...+.+..-++++++|++|+..+... +..+ .++.+...++.+.. T Consensus 1 MmmkilvI~gS~r~~s~t~~l~~~~~~~l~~~~g~~v~~i~l~~~~~~~~~---~~~~--------~~d~~~~~~e~i~~ 69 (197) T 2vzf_A 1 MTYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALL---RGDL--------SNAKLKEAVDATCN 69 (197) T ss_dssp CCEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHH---HTCT--------TSHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC---CCCC--------CCHHHHHHHHHHHC T ss_conf 997099998989967679999999999877655986999973457776542---3568--------98899999999970 Q ss_pred HCCCCCCCEEEECCC Q ss_conf 114778308998799 Q gi|254780714|r 79 QYTHEDIPRILMSPR 93 (236) Q Consensus 79 ~~~~~~~~vI~lSP~ 93 (236) . + .+|+-||- T Consensus 70 A----D-~iI~~sP~ 79 (197) T 2vzf_A 70 A----D-GLIVATPI 79 (197) T ss_dssp C----S-EEEEEEEC T ss_pred C----C-EEEEEECH T ss_conf 9----9-79998301 No 21 >>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} (A:1-225) Probab=41.37 E-value=27 Score=16.43 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=33.2 Q ss_pred CCEEEEEEEECHH--HHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCE Q ss_conf 9545899851835--6445640336799997496599996025635898513 Q gi|254780714|r 1 MTFHASILTLYPE--MFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHS 50 (236) Q Consensus 1 M~Mki~IITlFPe--~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~ 50 (236) ||||+-||.-=|. -+..-+-.-++..+.+. -++++.+||+|+..+.... T Consensus 1 mmmkiLiI~gSpr~~s~t~~l~~~~~~~l~~~-g~~~~~i~l~~~~~~~~~~ 51 (225) T 1d4a_A 1 VGRRALIVLAHSERTSFNYAMKEAAAAALKKK-GWEVVESDLYAMNFNPIIS 51 (225) T ss_dssp CCCEEEEEECCSCTTSHHHHHHHHHHHHHHHT-TCEEEEEETTTTTCCCCCC T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCC T ss_conf 98659999818998656999986207899978-8979999871158886578 No 22 >>1huf_A Tyrosine phosphatase YOPH; helical bundle, beta hairpin, hydrolase; 2.00A {Yersinia pestis} (A:) Probab=40.57 E-value=17 Score=17.75 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=23.3 Q ss_pred CCCCCEEEECHHHHHHHHHHHHHCCCCCC Q ss_conf 68886177505889999987531147783 Q gi|254780714|r 57 GGGAGMVLRVDILGKAIDHAVSQYTHEDI 85 (236) Q Consensus 57 GGG~GMVlk~epi~~ai~~~~~~~~~~~~ 85 (236) |||.||.|+..-+..-+..+.+..+++.. T Consensus 1 ~~~~gm~l~i~~Lh~qvs~laq~~~G~~~ 29 (140) T 1huf_A 1 GGGGGMNLSLSDLHRQVSRLVQQESGDCT 29 (140) T ss_dssp -------CCHHHHHHHHHHHHHTTTTTSB T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 97320226689999999999887537864 No 23 >>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A* (A:110-328,A:442-525) Probab=39.09 E-value=30 Score=16.20 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=67.8 Q ss_pred CCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEE Q ss_conf 06888617750588999998753114778308998799876048999997302875999415011448999740453100 Q gi|254780714|r 56 AGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEIS 135 (236) Q Consensus 56 yGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiS 135 (236) |.--|--- |+.-....+....++..+.+.+.||=|-.=..=-+...++|+++.+|++|--.-.--|.-....+- .|++ T Consensus 31 FSn~P~~f-m~~e~q~~L~e~reqNp~~~i~LVYsSt~Ln~~a~~ql~~faken~IsllDids~e~e~~L~nlak-aEL~ 108 (303) T 3jsz_A 31 FSIKPELF-XPSKQQEALKRRREQYPGCKIRLIYSSSLLNPEANRQXKAFAKKQNISLIDIDSVKTDSPLYPLIK-AELA 108 (303) T ss_dssp CCSSTTCS-SCHHHHHHHHHHHHHCTTCEEEEEECSTTSCHHHHHHHHHHHHHTTEEEEEGGGCCCCCTHHHHHH-HHHH T ss_pred EECCHHHH-CCHHHHHHHHHHHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HHHH T ss_conf 73786674-267789999999975899829999611323889999999998756933763211332177887789-9999 Q ss_pred EHHEEECCCCHHHHHHHHHHHHHHCCCCCCC Q ss_conf 3340111732779999999998505746782 Q gi|254780714|r 136 VGDYILSGGEPAALILLDAVVRLLPGVLGNQ 166 (236) Q Consensus 136 iGDyVLsGGEl~a~v~~dai~RlipGvlg~~ 166 (236) - .=+||-+||+- -++|-++++.+.. T Consensus 109 n---Lg~GGN~AaAS---DIvRWispi~~~g 133 (303) T 3jsz_A 109 N---LGXGGNPAAAS---DLCRWIPELFNEG 133 (303) T ss_dssp T---TTTTCCHHHHH---HHHTTCTTTCSSE T ss_pred H---HCCCCCHHHHH---HHHHHHHHHCCCC T ss_conf 7---33689778777---7888647762666 No 24 >>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} (A:1-234) Probab=37.87 E-value=28 Score=16.38 Aligned_cols=74 Identities=11% Similarity=0.008 Sum_probs=58.5 Q ss_pred CCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEEC-------CCCHHHHHHHHHHH Q ss_conf 83089987998760489999973028759994150114489997404531003340111-------73277999999999 Q gi|254780714|r 84 DIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILS-------GGEPAALILLDAVV 156 (236) Q Consensus 84 ~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLs-------GGEl~a~v~~dai~ 156 (236) ...+++.++.-+.-+-+..+++.+....+.+.|=|.+.-.|+.+..-..-+.+|++..+ +|.++---+++.+- T Consensus 8 ~~~~~~~~~~~~~~~~~~lr~~~~~~~~i~~~~~~D~~sA~i~~~~g~~ai~~s~~~~a~~~G~~D~~~l~~~e~~~~~~ 87 (234) T 1oy0_A 8 GANTPGGSGPRTKIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVR 87 (234) T ss_dssp ----------CCCCCHHHHHHHHHHTCCEEEEECCSHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHH T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCCCCCHHHHHHHHH T ss_conf 99999888998774699999998679948999568999999999759988997674486405776777678899999999 Q ss_pred H Q ss_conf 8 Q gi|254780714|r 157 R 157 (236) Q Consensus 157 R 157 (236) | T Consensus 88 ~ 88 (234) T 1oy0_A 88 G 88 (234) T ss_dssp H T ss_pred H T ss_conf 9 No 25 >>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} (A:1-75) Probab=31.66 E-value=14 Score=18.37 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=10.3 Q ss_pred CCEEEHHEEECCC Q ss_conf 3100334011173 Q gi|254780714|r 132 EEISVGDYILSGG 144 (236) Q Consensus 132 ~eiSiGDyVLsGG 144 (236) .|+++|||||.-- T Consensus 40 ~ev~vGD~VLVH~ 52 (75) T 2ot2_A 40 GQPRVGQWVLVHV 52 (75) T ss_dssp SCBCTTCEEEEET T ss_pred CCCCCCCEEEEEH T ss_conf 6467688999963 No 26 >>1xew_Y SMC protein; structural maintenance of chromosomes, ABC-atpases, condensin, cohesin, cell cycle; 2.00A {Pyrococcus furiosus} (Y:1-85) Probab=30.25 E-value=25 Score=16.73 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=17.1 Q ss_pred EEECCCC--HHHHHHHHHHHHHHC Q ss_conf 0111732--779999999998505 Q gi|254780714|r 139 YILSGGE--PAALILLDAVVRLLP 160 (236) Q Consensus 139 yVLsGGE--l~a~v~~dai~Rlip 160 (236) ..||||| ++|++++=|+-+.-| T Consensus 62 ~~lSGGEKsl~alallfAl~~~~P 85 (85) T 1xew_Y 62 EAMSGGEKALTALAFVFAIQKFKP 85 (85) T ss_dssp GGSCHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHCCCHHHHHHHHHHHHHCCCC T ss_conf 665132047999999999970388 No 27 >>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix} (A:11-34) Probab=28.14 E-value=15 Score=18.12 Aligned_cols=12 Identities=42% Similarity=0.781 Sum_probs=8.7 Q ss_pred EEHHEEECCCCH Q ss_conf 033401117327 Q gi|254780714|r 135 SVGDYILSGGEP 146 (236) Q Consensus 135 SiGDyVLsGGEl 146 (236) --||||||.|.- T Consensus 3 lrgdfvlssgrr 14 (24) T 2yzk_A 3 LRGDFVLSSGRR 14 (24) T ss_dssp EEEEEECTTSCE T ss_pred EECEEEECCCCC T ss_conf 928689787463 No 28 >>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} (A:) Probab=26.66 E-value=47 Score=14.87 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=24.4 Q ss_pred CEECHHHHHHHHH---CCCEEEEECCCHHHHHHHHHHC Q ss_conf 7604899999730---2875999415011448999740 Q gi|254780714|r 95 KTLTQKRVRQLSQ---KLGVIIVCGRFEGIDERIIEAR 129 (236) Q Consensus 95 k~l~Q~~a~~ls~---~~~liliCGrYEGiDeRvid~~ 129 (236) .+-..+.|++|.+ +.+.+++||-+.|+|+=+-+.. T Consensus 40 ~~~~~~~a~~lg~~La~~g~~ivsGg~~Gim~aa~~ga 77 (195) T 1rcu_A 40 VSELRDICLELGRTLAKKGYLVFNGGRDGVXELVSQGV 77 (195) T ss_dssp TGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHH T ss_conf 58999999999999998799999487274889999988 No 29 >>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8} (A:) Probab=26.53 E-value=47 Score=14.86 Aligned_cols=54 Identities=7% Similarity=-0.059 Sum_probs=38.7 Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHH Q ss_conf 05889999987531147783089987998760489999973028759994150114 Q gi|254780714|r 66 VDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI 121 (236) Q Consensus 66 ~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGi 121 (236) ++...+.+.....+. +...+|.++=+|-..+++.+..+....--+++|||.-.. T Consensus 121 ~~~~~~~~~~~~~~~--~~d~iIvl~H~g~~~~~~~~~~~~~~giDlvl~GH~H~~ 174 (252) T 2z06_A 121 LDDPFRALDRLLEEE--KADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVP 174 (252) T ss_dssp CCCHHHHHHHHHHHC--CCSEEEEEEECSCHHHHHHHHHHHBTTBSEEEEESSCSC T ss_pred CCCHHHHHHHHHHHC--CCCEEEEECCCCHHHHHEEEEEECCCCEEEEEECCCCCC T ss_conf 789899999998616--786699983552154332124760797899971675455 No 30 >>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* (A:) Probab=26.41 E-value=48 Score=14.84 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=31.4 Q ss_pred EECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEE Q ss_conf 9602563589851353113068886177505889999987531147783089987998760 Q gi|254780714|r 37 AIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTL 97 (236) Q Consensus 37 ~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l 97 (236) ++|.|||+-.--...||++ .|.+||+++.+... .+||+ |.|+-+ T Consensus 2 vvnV~dfGA~gDG~tDdt~------------Aiq~Ai~~a~~~gg----g~v~i-P~GtY~ 45 (377) T 2pyg_A 2 DYNVKDFGALGDGVSDDRA------------SIQAAIDAAYAAGG----GTVYL-PAGEYR 45 (377) T ss_dssp CEEGGGGTCCCEEEEECHH------------HHHHHHHHHHHTTS----EEEEE-CSEEEE T ss_pred EECCHHCCCCCCCCHHHHH------------HHHHHHHHHHHCCC----CEEEE-CCCEEE T ss_conf 7330305968989777899------------99999998875699----89999-997789 No 31 >>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved hypothetical protein, NPPSFA; 2.50A {Pyrococcus horikoshii OT3} (A:) Probab=24.19 E-value=52 Score=14.57 Aligned_cols=126 Identities=13% Similarity=0.071 Sum_probs=83.6 Q ss_pred ECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECH--HHHHHHHHC-CCEEEEECCCHHHHHHHHHHC Q ss_conf 11306888617750588999998753114778308998799876048--999997302-875999415011448999740 Q gi|254780714|r 53 DTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQ--KRVRQLSQK-LGVIIVCGRFEGIDERIIEAR 129 (236) Q Consensus 53 D~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q--~~a~~ls~~-~~liliCGrYEGiDeRvid~~ 129 (236) +.+.==|+|||+-|+.+.+-++.+.+.... ..++.|++...... ..+..+... ..=|==||+ ||-.-..|+. T Consensus 65 ~~~~~ig~Gvvi~p~~l~~Ei~~l~~~gv~---~~l~is~ra~iv~p~h~~~d~~~E~~~g~iGTtg~--GIGpay~dk~ 139 (339) T 2d7u_A 65 KARLLIGAGVLVDPEVFFHELEQLKDFNVK---DRVGIDYRCAIIEEKHKQLDRTNGYLHGKIGTTGS--GCGPANADRV 139 (339) T ss_dssp SSBEEECTTSCBCHHHHHHHHHHTGGGTGG---GTEEEETTCBBCCHHHHC----------------C--CHHHHHHHHT T ss_pred CCEEEECCCEECCHHHHHHHHHHHHHCCCC---CCEEECCHHCCCCCHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHH T ss_conf 836964896043999999999998641566---73675612214885078875654764468775444--3116788865 Q ss_pred CCCCEEEHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCHHH Q ss_conf 453100334011173277999999999850574678222334401148846211167254 Q gi|254780714|r 130 DLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLEFPQYTRPQI 189 (236) Q Consensus 130 ~d~eiSiGDyVLsGGEl~a~v~~dai~RlipGvlg~~~S~~~eSf~~~lLe~P~YTrP~~ 189 (236) .-..+-++|+-.---.+ .-+.+++..++.+.+++.-|.=+.-||+--+=|-|.+ T Consensus 140 ~R~~ir~~D~~~l~~~i------~D~~~~l~~al~~g~~vlfEGaQG~lLDid~GtYP~V 193 (339) T 2d7u_A 140 MRKAKQAKDVKELEPYL------TDVAQEINDALDEGSLVLVEGTQGFGLSLYYGTYPYV 193 (339) T ss_dssp TTCSCBGGGCSSSSTTE------ECHHHHHHHHHHTTCCEEEEEEEEGGGCTTTSSTTSS T ss_pred HCCCCEECHHHCCCCCC------CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC T ss_conf 10011200100236443------6379999999877983998501466413458963114 No 32 >>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis, metal- binding, purine metabolism, nucleotide-binding, GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens} PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A* 1mf0_A* 1mf1_A* 2dgn_A* (A:) Probab=23.78 E-value=53 Score=14.52 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=76.4 Q ss_pred CCCCCCCEEEECHHHHHHHHHHHHHCCC--CCCCEEEECCCCCEECH-----HHHHHHHHCCCE---EEEECCCHHHHHH Q ss_conf 3068886177505889999987531147--78308998799876048-----999997302875---9994150114489 Q gi|254780714|r 55 PAGGGAGMVLRVDILGKAIDHAVSQYTH--EDIPRILMSPRGKTLTQ-----KRVRQLSQKLGV---IIVCGRFEGIDER 124 (236) Q Consensus 55 PyGGG~GMVlk~epi~~ai~~~~~~~~~--~~~~vI~lSP~Gk~l~Q-----~~a~~ls~~~~l---iliCGrYEGiDeR 124 (236) +-==|+|||+-|+-+.+-++.+.++.-. .....++.|++...... ..+.|....++. +==||| ||-+- T Consensus 95 ~~~ig~GvVidp~~L~~Ei~~L~~~gi~v~~~~~rL~Is~ra~ii~P~H~~lD~~~E~~rg~~~~~~iGTTg~--GIGpa 172 (459) T 2v40_A 95 TAFIGNGVVIHLPGLFEEAEKNVQKGKGLEGWEKRLIISDRAHIVFDFHQAADGIQEQQRQEQAGKNLGTTKK--GIGPV 172 (459) T ss_dssp EEEECTTBEEEHHHHHHHHHHHHHHCGGGTTGGGSEEEETTCEEECHHHHHHHHHHHHC------------CC--CHHHH T ss_pred EEEECCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC--CCHHH T ss_conf 0898997898099999999999862998656630032056631278613766798873200234676454465--21366 Q ss_pred HHHHCCCCCEEEHHEEEC--------------------CCC--HHHHH--HHHHH----------HHHHCCCC-CCCCCC Q ss_conf 997404531003340111--------------------732--77999--99999----------98505746-782223 Q gi|254780714|r 125 IIEARDLEEISVGDYILS--------------------GGE--PAALI--LLDAV----------VRLLPGVL-GNQQST 169 (236) Q Consensus 125 vid~~~d~eiSiGDyVLs--------------------GGE--l~a~v--~~dai----------~RlipGvl-g~~~S~ 169 (236) ..|+..-.-|.++|..=- .-+ +.+++ +.... +.++...+ .+.+++ T Consensus 173 y~dk~~r~gir~~DL~~d~~~l~~kl~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~i~D~~~~l~~al~~~gk~v 252 (459) T 2v40_A 173 YSSKAARSGLRMCDLVSDFDGFSERFKVLANQYKSIYPTLEIDIEGELQKLKGYMEKIKPMVRDGVYFLYEALHGPPKKI 252 (459) T ss_dssp HHHHHHTCCCBHHHHTSCHHHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHSSCCCE T ss_pred HHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEE T ss_conf 77654000000244403477899999999887765324332018899999999998740220220899999997189869 Q ss_pred CCCCHHCCCCCCCCCCCHHH Q ss_conf 34401148846211167254 Q gi|254780714|r 170 IHESFENGLLEFPQYTRPQI 189 (236) Q Consensus 170 ~~eSf~~~lLe~P~YTrP~~ 189 (236) .-|.=+.-||+--+=|-|.+ T Consensus 253 LfEGaQG~lLDid~GtyP~V 272 (459) T 2v40_A 253 LVEGANAALLDIDFGTYPFV 272 (459) T ss_dssp EEECCSCGGGCTTTSSTTSS T ss_pred EEHHHHHHHHHCCCCCCCCC T ss_conf 98112467774026736763 No 33 >>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} (A:1-116) Probab=23.48 E-value=20 Score=17.36 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=35.5 Q ss_pred CCCCCCEEEECHHHHHHHHHHHHHCCC----CCCCEEEECCCCCEECHHH------HHHHHHCCCEEEEECCCHHHHHHH Q ss_conf 068886177505889999987531147----7830899879987604899------999730287599941501144899 Q gi|254780714|r 56 AGGGAGMVLRVDILGKAIDHAVSQYTH----EDIPRILMSPRGKTLTQKR------VRQLSQKLGVIIVCGRFEGIDERI 125 (236) Q Consensus 56 yGGG~GMVlk~epi~~ai~~~~~~~~~----~~~~vI~lSP~Gk~l~Q~~------a~~ls~~~~liliCGrYEGiDeRv 125 (236) -|||.||+-+|.-+.+-++.+++-.+. .++..-|+|-.|..+|.=. +.+|.+.+. +.--.+|- T Consensus 7 hgggggminkpnqf~nhl~~lk~hf~~y~~l~~~f~~y~~~n~~el~~ff~~qf~ki~~lvk~k~-------fktaq~rc 79 (116) T 1td6_A 7 HGGGGGMINKPNQFVNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFLHQFDKVMELVKQKD-------FKTAQSRC 79 (116) T ss_dssp ----------CCCSSTTCSBCCCCCSSHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHTTC-------HHHHHHHH T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH T ss_conf 03678873681889999999998612299999999886216622689999999999999997500-------78999999 Q ss_pred HHHCCC Q ss_conf 974045 Q gi|254780714|r 126 IEARDL 131 (236) Q Consensus 126 id~~~d 131 (236) .++++. T Consensus 80 eeela~ 85 (116) T 1td6_A 80 EEELAA 85 (116) T ss_dssp HHHTTC T ss_pred HHHHCC T ss_conf 987358 No 34 >>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A (A:) Probab=23.38 E-value=23 Score=16.91 Aligned_cols=11 Identities=55% Similarity=0.909 Sum_probs=9.1 Q ss_pred ECCCCHHHHHH Q ss_conf 11732779999 Q gi|254780714|r 141 LSGGEPAALIL 151 (236) Q Consensus 141 LsGGEl~a~v~ 151 (236) |||||+.|.++ T Consensus 8 ltggeivavif 18 (38) T 2k1k_A 8 LTGGEIVAVIF 18 (38) T ss_dssp CCHHHHHHHHH T ss_pred CCCCEEHHHHH T ss_conf 76763089999 No 35 >>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} (A:1-182) Probab=22.37 E-value=57 Score=14.34 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=33.4 Q ss_pred EEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEC Q ss_conf 99996025635898513531130688861775058899999875311477830899879987604 Q gi|254780714|r 34 SMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLT 98 (236) Q Consensus 34 ~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~ 98 (236) .-.++|.+||+-..-...||++ .+.+||+++.+... ..+++-|.|.-+. T Consensus 19 ~~~~~nV~~fGA~gDG~tDdt~------------Aiq~Ai~~~~~~~g----g~~v~~p~G~y~~ 67 (182) T 1h80_A 19 DVNYDLVDDFGANGNDTSDDSN------------ALQRAINAISRKPN----GGTLLIPNGTYHF 67 (182) T ss_dssp SEEEEHHHHHCCCTTSSSBCHH------------HHHHHHHHHHTSTT----CEEEEECSSEEEE T ss_pred CCCCCHHHHHCCCCCCCCCCHH------------HHHHHHHHHCCCCC----CCEEEECCCCEEE T ss_conf 4661003220567887765258------------99999887502899----9648843872478 No 36 >>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A {Plasmodium falciparum} (A:) Probab=21.53 E-value=59 Score=14.23 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=71.1 Q ss_pred ECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECH-----HHHHHH--HHCCCEEEEECCCHHHHHHH Q ss_conf 11306888617750588999998753114778308998799876048-----999997--30287599941501144899 Q gi|254780714|r 53 DTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQ-----KRVRQL--SQKLGVIIVCGRFEGIDERI 125 (236) Q Consensus 53 D~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q-----~~a~~l--s~~~~liliCGrYEGiDeRv 125 (236) +.+.==|+|||+-|+.+.+-++.+++.. ...++.|++...... ..+.|. ++..+=+=-||| ||-.-. T Consensus 76 ~~~~vig~GvVidp~~l~~Ei~~L~~~g----~~rl~Is~ra~ii~p~H~~lD~~~E~~r~~g~~~iGTTg~--GIGpay 149 (442) T 1p9b_A 76 NNISVLGNGMVIHVKSLMEEIESVGGKL----LDRLYLSNKAHILFDIHQIIDSIQETKKLKEGKQIGTTKR--GIGPCY 149 (442) T ss_dssp TCEEEECTTCEECHHHHHHHHHHHCTTG----GGGEEEETTSEECCHHHHHHHHHHHHHHHHTTCCCCCCSS--SHHHHH T ss_pred CCEEEECCCEEEEHHHHHHHHHHHCCCC----CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCHHHH T ss_conf 9728988988980999999999850568----8876886986567857887667776541147765566888--786988 Q ss_pred HHHCCCCCEEEHHEEEC-------------------CCCHHH----HHHHHHHHHH----------HCCCCCCCCCCCCC Q ss_conf 97404531003340111-------------------732779----9999999985----------05746782223344 Q gi|254780714|r 126 IEARDLEEISVGDYILS-------------------GGEPAA----LILLDAVVRL----------LPGVLGNQQSTIHE 172 (236) Q Consensus 126 id~~~d~eiSiGDyVLs-------------------GGEl~a----~v~~dai~Rl----------ipGvlg~~~S~~~e 172 (236) .|+..-.-|-++|..-. .-++.. --+.+..-++ +...+...+++.-| T Consensus 150 ~dk~~R~gir~~DL~~~~~l~~kl~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfE 229 (442) T 1p9b_A 150 STKASRIGIRLGTLKNFENFKNMYSKLIDHLMDLYNITEYDKEKELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIE 229 (442) T ss_dssp HHHHTTCCCBGGGGGSHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHTTCCEEEE T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 97654014412211586789999999998775531233111688999998778985170556899999999879947986 Q ss_pred CHHCCCCCCCCCCCHHH Q ss_conf 01148846211167254 Q gi|254780714|r 173 SFENGLLEFPQYTRPQI 189 (236) Q Consensus 173 Sf~~~lLe~P~YTrP~~ 189 (236) .=+.-||+--+=|-|.+ T Consensus 230 GaQG~lLDid~GtYP~V 246 (442) T 1p9b_A 230 GANAAMLDIDFGTYPYV 246 (442) T ss_dssp CCSCGGGCTTTSSTTSS T ss_pred CCCEEEECCCCCCCCCC T ss_conf 14304760466878702 No 37 >>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain; NMR {Homo sapiens} (A:) Probab=21.03 E-value=60 Score=14.17 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=14.4 Q ss_pred CCCCEEEECCCCCEECHH Q ss_conf 783089987998760489 Q gi|254780714|r 83 EDIPRILMSPRGKTLTQK 100 (236) Q Consensus 83 ~~~~vI~lSP~Gk~l~Q~ 100 (236) .+.-|+|.||+|+.|-.. T Consensus 29 ~k~DvyY~sP~Gkk~RS~ 46 (75) T 1d9n_A 29 GRSDTYYQSPTGDRIRSK 46 (75) T ss_dssp CCCCEEEECSSSCEECST T ss_pred CCEEEEEECCCCCEEECH T ss_conf 722689988999778769 No 38 >>3l83_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2, protein structure initiative; 1.50A {Methylobacillus flagellatus} (A:) Probab=20.25 E-value=62 Score=14.06 Aligned_cols=72 Identities=10% Similarity=-0.001 Sum_probs=50.1 Q ss_pred CCE-EEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCC--CCEEEECCCCCCCCEEEECHHHHHHHHHHH Q ss_conf 954-58998518356445640336799997496599996025635898--513531130688861775058899999875 Q gi|254780714|r 1 MTF-HASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDR--HHSVDDTPAGGGAGMVLRVDILGKAIDHAV 77 (236) Q Consensus 1 M~M-ki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~k--h~~VDD~PyGGG~GMVlk~epi~~ai~~~~ 77 (236) |+| +|-||--.. ...++.+.+++++.-+++.++..-+.+.+. -...|---..|||+.+-...++...+..+. T Consensus 1 M~~~~iliid~~~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DgiIi~GGp~~~~~~~~~~~~~~~li 75 (250) T 3l83_A 1 MSLKPVMIIQFSA-----SEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALI 75 (250) T ss_dssp ----CEEEEECSS-----SCCCTHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHH T ss_pred CCCCEEEEEECCC-----CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHH T ss_conf 9986499996789-----99805999999848987999978999878778645999999099997778786689999999 No 39 >>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} (A:10-247) Probab=20.18 E-value=63 Score=14.05 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=37.3 Q ss_pred CEEEECCCCCEECHHHHHHHHHCCCEEEEEC-CCH-HH---HHHHH-HHCCCCCEEEHHEEECCCCHHHHH Q ss_conf 0899879987604899999730287599941-501-14---48999-740453100334011173277999 Q gi|254780714|r 86 PRILMSPRGKTLTQKRVRQLSQKLGVIIVCG-RFE-GI---DERII-EARDLEEISVGDYILSGGEPAALI 150 (236) Q Consensus 86 ~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCG-rYE-Gi---DeRvi-d~~~d~eiSiGDyVLsGGEl~a~v 150 (236) .++..+|.|...+.+...+++++.++.+++= =|- |. +.... ....+--+.-+...++|+....++ T Consensus 115 ~~~~~~~~g~~~~~~~i~~la~~~g~~iivD~a~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~g~~~G~~~ 185 (238) T 2fnu_A 115 AIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVV 185 (238) T ss_dssp EEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEE T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE T ss_conf 11000135643234532121102211110104441486301100476521331134676444210450366 Done!