HHsearch results for GI: 254780714 and protein with PDBid: 3knu_A
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ}
Probab=100.00 E-value=0 Score=749.98 Aligned_cols=232 Identities=46% Similarity=0.881 Sum_probs=220.1
Q ss_pred CCEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHC
Q ss_conf 95458998518356445640336799997496599996025635898513531130688861775058899999875311
Q gi|254780714|r 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQY 80 (236)
Q Consensus 1 M~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~ 80 (236)
..|+|+|||||||||++++++||+|||+++|+|+++++|||||+.|||++|||+||||||||||||||+++|+++++..
T Consensus 20 ~~M~f~IiTLFPe~f~~~l~~sIigrA~~~glv~i~~~nlRdfs~~kh~~VDD~PyGGGpGMVmk~ePl~~Ai~~~~~~- 98 (253)
T 3knu_A 20 GSMIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFANNKHNTVDDTPYGGGPGMLLRADVLGRCIDEVLSL- 98 (253)
T ss_dssp -CEEEEEEESCGGGCSGGGGSHHHHHHHHHTSEEEEEEEGGGGC-----CCEECCTTCCSSCEECHHHHHHHHHHHHHH-
T ss_pred CCEEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-
T ss_conf 8539999998967623142141799999869658998772652799998635673799983078528999999999850-
Q ss_pred CCCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHC
Q ss_conf 47783089987998760489999973028759994150114489997404531003340111732779999999998505
Q gi|254780714|r 81 THEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLP 160 (236)
Q Consensus 81 ~~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~Rlip 160 (236)
.++.++||+||||++|||++|++||++++|||||||||||||||+|+++|+|||||||||||||+|||+++||++||+|
T Consensus 99 -~~~~~vI~lSP~G~~~~q~~a~~ls~~~~liliCGrYEGiDeRvid~~vd~EiSiGDyVLsGGEl~A~~iiDav~RllP 177 (253)
T 3knu_A 99 -HPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGIDERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVP 177 (253)
T ss_dssp -CTTCEEEEEEEEEEECCHHHHHHHHTCSEEEEEECCTTCBCHHHHHHHTCEEEESSSSCCSSSHHHHHHHHHHHHTTST
T ss_pred -CCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCEEEECCCHHHHHHHHHHHHHCC
T ss_conf -8986699879999607799998751368679996240134478885178638984288985753899999999998443
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC
Q ss_conf 746782223344011488462111672540898898434189989999999999999998768626863056346
Q gi|254780714|r 161 GVLGNQQSTIHESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNT 235 (236)
Q Consensus 161 Gvlg~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~ 235 (236)
|||||++|+.+|| +++||||||||||++|+|++||+|||||||++|++||++||+++|+++|||||+++...++
T Consensus 178 GvLg~~~s~~e~s-~~~lLe~P~YTRP~~~~g~~VPeVLlSGnH~~I~~WR~~~sl~~T~~~RPDLl~~~~~~~d 251 (253)
T 3knu_A 178 GVIGNAESLKQES-MEGSLEYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASLSITAARRPDLLKDRYGEND 251 (253)
T ss_dssp TTC----------------CCCCCCSCSEETTEECCGGGGTTCHHHHHHHHHHHCC-------------------
T ss_pred CCCCCHHHCCCCH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCC
T ss_conf 0144111111222-1179899886894101899798210389979999999999999998769299886303455