Query gi|254780714|ref|YP_003065127.1| tRNA (guanine-N(1)-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 236 No_of_seqs 141 out of 1853 Neff 4.7 Searched_HMMs 23785 Date Tue May 31 15:57:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780714.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ual_A TRNA (guanine-N(1)-)-me 100.0 0 0 768.1 19.0 234 2-236 20-253 (274) 2 3ky7_A TRNA (guanine-N(1)-)-me 100.0 0 0 769.2 17.5 232 2-236 24-255 (269) 3 3ief_A TRNA (guanine-N(1)-)-me 100.0 0 0 761.5 18.4 231 1-236 2-232 (233) 4 3knu_A TRNA (guanine-N(1)-)-me 100.0 0 0 750.0 15.8 232 1-235 20-251 (253) 5 1oy5_A TRNA (guanine-N(1)-)-me 100.0 0 0 741.3 13.4 228 2-235 5-232 (257) 6 2v3j_A Essential for mitotic g 99.2 1.4E-11 6E-16 96.7 3.9 108 30-143 107-234 (258) 7 1o6d_A Hypothetical UPF0247 pr 97.5 0.00064 2.7E-08 46.1 8.7 135 1-159 1-143 (163) 8 1vh0_A Hypothetical UPF0247 pr 97.3 0.0019 8E-08 42.9 8.9 140 1-158 1-150 (161) 9 1to0_A Hypothetical UPF0247 pr 96.7 0.016 6.8E-07 36.8 9.8 139 3-159 1-149 (167) 10 1ns5_A Hypothetical protein YB 94.2 0.064 2.7E-06 32.8 5.1 135 3-158 1-143 (155) 11 1r5j_A Putative phosphotransac 57.6 10 0.00043 18.2 3.9 64 57-127 2-67 (337) 12 2qmm_A UPF0217 protein AF_1056 52.0 13 0.00056 17.5 4.8 73 60-142 105-180 (197) 13 1zgg_A Putative low molecular 50.3 8 0.00034 18.9 2.4 19 12-30 9-27 (150) 14 3fxa_A SIS domain protein; YP_ 44.4 15 0.00061 17.2 3.0 89 83-175 92-186 (201) 15 3jur_A EXO-poly-alpha-D-galact 41.5 19 0.00081 16.4 3.8 46 36-98 26-71 (448) 16 3maj_A DNA processing chain A; 37.6 8.2 0.00034 18.9 0.8 41 90-131 138-178 (382) 17 2a22_A Vacuolar protein sortin 37.3 20 0.00083 16.3 2.8 60 106-172 22-94 (215) 18 2r60_A Glycosyl transferase, g 33.8 25 0.0011 15.7 3.8 18 172-189 369-386 (499) 19 2ot2_A Hydrogenase isoenzymes 28.9 12 0.00049 17.9 0.4 13 131-143 39-51 (90) 20 3m3p_A Glutamine amido transfe 27.4 32 0.0014 15.0 3.0 71 1-76 1-74 (250) 21 1xww_A Low molecular weight ph 26.7 33 0.0014 14.9 3.8 20 11-30 13-32 (157) 22 2p4q_A 6-phosphogluconate dehy 25.7 34 0.0014 14.8 5.0 128 1-148 9-142 (497) 23 1qfj_A Protein (flavin reducta 25.0 35 0.0015 14.7 5.3 109 56-175 108-230 (232) 24 3d3r_A Hydrogenase assembly ch 24.2 4 0.00017 21.0 -2.7 27 118-144 44-70 (103) 25 2k1k_A Ephrin type-A receptor 23.4 16 0.00069 16.9 0.4 11 141-151 8-18 (38) 26 1huf_A Tyrosine phosphatase YO 21.1 42 0.0018 14.2 2.1 110 57-166 1-136 (140) No 1 >1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 1p9p_A* Probab=100.00 E-value=0 Score=768.08 Aligned_cols=234 Identities=45% Similarity=0.791 Sum_probs=227.4 Q ss_pred CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 54589985183564456403367999974965999960256358985135311306888617750588999998753114 Q gi|254780714|r 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT 81 (236) Q Consensus 2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~ 81 (236) .|+|+|||||||||++++++||+|||+++|+|+++++|||||+.|||++|||+||||||||||||||+++|++++++.. T Consensus 20 ~M~i~IiTLFPe~f~~~l~~sIigrA~~kgli~i~~~nlRdfs~~kh~~VDD~PyGGG~GMVm~~ePl~~ai~~~~~~~- 98 (274) T 1ual_A 20 HMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAA- 98 (274) T ss_dssp CEEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSCCEECHHHHHHHHHHHHHHH- T ss_pred CCEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCC- T ss_conf 7879999988565231433338999998797699987836608898886567868999852664488899999977415- Q ss_pred CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC Q ss_conf 77830899879987604899999730287599941501144899974045310033401117327799999999985057 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG 161 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG 161 (236) .++.+|||+||||++|||+.|++|+++++|||||||||||||||+|+++|+|||||||||||||+||||++||++||+|| T Consensus 99 ~~~~~VI~lSP~Gk~f~Q~~a~~ls~~~~liliCGrYEGiDeRvie~~vd~eiSIGDyVLsGGEl~AmviiDav~RllPG 178 (274) T 1ual_A 99 GEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPG 178 (274) T ss_dssp CTTCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHTTSTT T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCEEEECCCEEEECCHHHHHHHHHHHHHHCCC T ss_conf 88743998787507666899985335662899965510075999986351585404688608479999999999995788 Q ss_pred CCCCCCCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC Q ss_conf 467822233440114884621116725408988984341899899999999999999987686268630563469 Q gi|254780714|r 162 VLGNQQSTIHESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ 236 (236) Q Consensus 162 vlg~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~e 236 (236) ||||++|+.+|||+||||||||||||++|+|++||+|||||||++|++||++||+++|+++|||||++.+++++| T Consensus 179 VLgn~~S~~~eSF~~~lLe~P~YTRP~~~~g~~VPeVLlSGnH~~I~~WR~~~sl~~T~~~RPDLl~~~~l~~~e 253 (274) T 1ual_A 179 VLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQ 253 (274) T ss_dssp CC---------CCSSSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTCCCCHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHH T ss_conf 668800111145758988898769942129998994224899799999999999999987696899875899999 No 2 >3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp} Probab=100.00 E-value=0 Score=769.24 Aligned_cols=232 Identities=42% Similarity=0.772 Sum_probs=225.7 Q ss_pred CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 54589985183564456403367999974965999960256358985135311306888617750588999998753114 Q gi|254780714|r 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT 81 (236) Q Consensus 2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~ 81 (236) +|+|+|||||||||++++++||+|||+++|+|+++++|||||+.|||++|||+||||||||||||||+++|+++++. T Consensus 24 ~Mki~IiTLFPe~f~~~l~~siigrA~~~gli~i~~~nlRdfa~dkh~~VDD~PyGGG~GMVmk~ePl~~Ai~~i~~--- 100 (269) T 3ky7_A 24 AMKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDV--- 100 (269) T ss_dssp -CEEEEEESCGGGGHHHHHHTTTHHHHHTTSCEEEEEEGGGGC-CCSCCSEECCTTCCSSCEECHHHHHHHHHHTTC--- T ss_pred CCEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHC--- T ss_conf 61899999886761325436589999987965899877366178988764687678998458870145899875311--- Q ss_pred CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC Q ss_conf 77830899879987604899999730287599941501144899974045310033401117327799999999985057 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG 161 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG 161 (236) ..+++||||||||++|||+.|++||++++|||||||||||||||+|+++|+|||||||||||||+||||++||++||+|| T Consensus 101 ~~~~~vI~lSP~Gk~~~Q~~a~els~~~~liliCGrYEGiDeRvi~~~vd~EiSIGDyVLsGGEl~AmviiDav~RllPG 180 (269) T 3ky7_A 101 TEQARVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPG 180 (269) T ss_dssp CTTSEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCCSCBCHHHHHHTCCEEEESSSSCCSCSHHHHHHHHHHHHTTSCC T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCEEECCCHHHHHHHHHHHHHHHHC T ss_conf 46774688898986842778999867998699965523465888876065487403489708559999999999999742 Q ss_pred CCCCCCCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC Q ss_conf 467822233440114884621116725408988984341899899999999999999987686268630563469 Q gi|254780714|r 162 VLGNQQSTIHESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ 236 (236) Q Consensus 162 vlg~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~e 236 (236) ||||++|+.+|||+||||||||||||++|+|++||+|||||||++|++||++||+++|+++|||||++++++++| T Consensus 181 Vlg~~~S~~~eSF~~gLLe~P~YTRP~~~~g~~VPeVLlSGnH~~I~~WR~~~sl~~T~~~RPDLl~~~~l~~~e 255 (269) T 3ky7_A 181 VLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNAD 255 (269) T ss_dssp -------------CCSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTSCCCHHH T ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHH T ss_conf 458842044150523898998528941128997981104798799999999999999987695799866999999 No 3 >3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} Probab=100.00 E-value=0 Score=761.47 Aligned_cols=231 Identities=61% Similarity=1.061 Sum_probs=224.4 Q ss_pred CCEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHC Q ss_conf 95458998518356445640336799997496599996025635898513531130688861775058899999875311 Q gi|254780714|r 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQY 80 (236) Q Consensus 1 M~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~ 80 (236) |.|+|+|||||||||++++++||+|||+++|+|+++++|||||+.|||++|||+||||||||||||||+.+|++++++ T Consensus 2 M~f~i~IiTlFPe~f~~~l~~siigrA~~~g~~~i~~~nlRdf~~~kh~~VDD~PyGGG~GMVm~~epl~~ai~~~~~-- 79 (233) T 3ief_A 2 MKFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFALDKHHSVDDTPAGGGAGMVMRADVLAAALDSCPN-- 79 (233) T ss_dssp -CEEEEEEESCGGGSSGGGGSHHHHHHHHTTSEEEEEEEGGGGC-----CCEECCTTCCSSCEECHHHHHHHHTTSCC-- T ss_pred CCCCCEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHC-- T ss_conf 842141889883641304335589999876966999878254078989862561468999838736899999998651-- Q ss_pred CCCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHC Q ss_conf 47783089987998760489999973028759994150114489997404531003340111732779999999998505 Q gi|254780714|r 81 THEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLP 160 (236) Q Consensus 81 ~~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~Rlip 160 (236) +.++|||||||++|||++|++||++++|+|||||||||||||+|+++|+|||||||||||||+||||++||++||+| T Consensus 80 ---~~~vI~lSP~Gk~~~Q~~a~~ls~~~~liliCGrYEGiDeRv~~~~~~~eiSiGDyVLsGGEl~A~viiDav~Rllp 156 (233) T 3ief_A 80 ---DSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLP 156 (233) T ss_dssp ---CSCEEEEEEEEEECCHHHHHHHTTSSEEEEEECCSSCBBHHHHHHTTCEEEESSSSCCSCHHHHHHHHHHHHHTTST T ss_pred ---CCCEEEECCCCCEECHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCEEEECCCHHHHHHHHHHHHHCC T ss_conf ---79889988997681167769873699779996351444089998636468760378971750999999999998587 Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC Q ss_conf 7467822233440114884621116725408988984341899899999999999999987686268630563469 Q gi|254780714|r 161 GVLGNQQSTIHESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ 236 (236) Q Consensus 161 Gvlg~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~e 236 (236) |||||++|+.+|||+||||||||||||++|+|++||+|||||||++|++||++||+++|+++|||||++..++++| T Consensus 157 Gvlgn~~S~~~eSF~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~~ 232 (233) T 3ief_A 157 GVMGNEISAKCESFENGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYALYNKNRQK 232 (233) T ss_dssp TSSSGGGCCSSCGGGGTCCCCCBCCSSSEETTEECCGGGGSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTC- T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC T ss_conf 8668811200110027998998568855257998895014898799999999999999987798999998652006 No 4 >3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} Probab=100.00 E-value=0 Score=749.98 Aligned_cols=232 Identities=46% Similarity=0.881 Sum_probs=220.1 Q ss_pred CCEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHC Q ss_conf 95458998518356445640336799997496599996025635898513531130688861775058899999875311 Q gi|254780714|r 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQY 80 (236) Q Consensus 1 M~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~ 80 (236) ..|+|+|||||||||++++++||+|||+++|+|+++++|||||+.|||++|||+||||||||||||||+++|+++++.. T Consensus 20 ~~M~f~IiTLFPe~f~~~l~~sIigrA~~~glv~i~~~nlRdfs~~kh~~VDD~PyGGGpGMVmk~ePl~~Ai~~~~~~- 98 (253) T 3knu_A 20 GSMIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFANNKHNTVDDTPYGGGPGMLLRADVLGRCIDEVLSL- 98 (253) T ss_dssp -CEEEEEEESCGGGCSGGGGSHHHHHHHHHTSEEEEEEEGGGGC-----CCEECCTTCCSSCEECHHHHHHHHHHHHHH- T ss_pred CCEEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH- T ss_conf 8539999998967623142141799999869658998772652799998635673799983078528999999999850- Q ss_pred CCCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHC Q ss_conf 47783089987998760489999973028759994150114489997404531003340111732779999999998505 Q gi|254780714|r 81 THEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLP 160 (236) Q Consensus 81 ~~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~Rlip 160 (236) .++.++||+||||++|||++|++||++++|||||||||||||||+|+++|+|||||||||||||+|||+++||++||+| T Consensus 99 -~~~~~vI~lSP~G~~~~q~~a~~ls~~~~liliCGrYEGiDeRvid~~vd~EiSiGDyVLsGGEl~A~~iiDav~RllP 177 (253) T 3knu_A 99 -HPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGIDERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVP 177 (253) T ss_dssp -CTTCEEEEEEEEEEECCHHHHHHHHTCSEEEEEECCTTCBCHHHHHHHTCEEEESSSSCCSSSHHHHHHHHHHHHTTST T ss_pred -CCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCEEEECCCHHHHHHHHHHHHHCC T ss_conf -8986699879999607799998751368679996240134478885178638984288985753899999999998443 Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC Q ss_conf 746782223344011488462111672540898898434189989999999999999998768626863056346 Q gi|254780714|r 161 GVLGNQQSTIHESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNT 235 (236) Q Consensus 161 Gvlg~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~ 235 (236) |||||++|+.+|| +++||||||||||++|+|++||+|||||||++|++||++||+++|+++|||||+++...++ T Consensus 178 GvLg~~~s~~e~s-~~~lLe~P~YTRP~~~~g~~VPeVLlSGnH~~I~~WR~~~sl~~T~~~RPDLl~~~~~~~d 251 (253) T 3knu_A 178 GVIGNAESLKQES-MEGSLEYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASLSITAARRPDLLKDRYGEND 251 (253) T ss_dssp TTC----------------CCCCCCSCSEETTEECCGGGGTTCHHHHHHHHHHHCC------------------- T ss_pred CCCCCHHHCCCCH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCC T ss_conf 0144111111222-1179899886894101899798210389979999999999999998769299886303455 No 5 >1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4 Probab=100.00 E-value=0 Score=741.27 Aligned_cols=228 Identities=38% Similarity=0.620 Sum_probs=217.3 Q ss_pred CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 54589985183564456403367999974965999960256358985135311306888617750588999998753114 Q gi|254780714|r 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT 81 (236) Q Consensus 2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~ 81 (236) .|+|+|||||||||++++++||+|||+++|+|+++++|||||+.+ ++|||+||||||||||||||+++|+++++++ T Consensus 5 ~Mk~~IiTLFPe~f~~~l~~sIigrA~~~gl~~i~~~nlRdf~~~--k~VDD~PyGGGpGMVm~~epl~~ai~~~~~~-- 80 (257) T 1oy5_A 5 PLRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAPK--GQVDDVPYGGLPGMVLKPEPIYEAYDYVVEN-- 80 (257) T ss_dssp CEEEEEEESCHHHHHHHTTSHHHHHHHHHTSEEEEEEEGGGGCTT--SCCEECBSSCCSSCEECHHHHHHHHHHHHHH-- T ss_pred CEEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCC--CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHC-- T ss_conf 848999998856522032244899999869748998641673679--9867785589995088506999999998750-- Q ss_pred CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC Q ss_conf 77830899879987604899999730287599941501144899974045310033401117327799999999985057 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG 161 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG 161 (236) ..++++||+||||++|||+.|++||+.++|+|||||||||||||.+ ++|+|||||||||||||+||||++||++||+|| T Consensus 81 ~~~~~vI~lSP~G~~~~Q~~a~eLs~~~~liliCGRYEGiDeRi~~-~~d~EiSiGDyVLsGGEl~A~viiDav~RliPG 159 (257) T 1oy5_A 81 YGKPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGVDERVKK-IVDMEISLGDFILSGGEIVALAVIDAVSRVLPG 159 (257) T ss_dssp HCCCEEEEECTTBCCCCHHHHHHHHTCSEEEEEECBTTCBCGGGGG-GCCEECCBCSSCCSBSHHHHHHHHHHHHHTSTT T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-CCCEEEEECCEEEECCCHHHHHHHHHHHHHCCC T ss_conf 6997499727531012378778762599779996462148788752-687388641689708608999999999985788 Q ss_pred CCCCCCCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC Q ss_conf 46782223344011488462111672540898898434189989999999999999998768626863056346 Q gi|254780714|r 162 VLGNQQSTIHESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNT 235 (236) Q Consensus 162 vlg~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~ 235 (236) ||||++|+.+|||++|||||||||||++|+|++||+|||||||++|++||+++|+++|+++|||||++. ++++ T Consensus 160 vlg~~~S~~~eSF~~glLe~P~YTRP~~~~g~~VPeVLlSGnH~~I~~WR~~~sl~~T~~~RPDLl~k~-l~~~ 232 (257) T 1oy5_A 160 VLSEPQSIQEDSFQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKRPDLIPKD-LTEL 232 (257) T ss_dssp TSSCC--------------CCCCBSCSEETTEECCGGGTSCSSSTTTHHHHHHHTTTGGGSCSSCSTTG-GGTT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHH-CCHH T ss_conf 548976553033448988898769957049998984331798799999999999999987694777621-6999 No 6 >2v3j_A Essential for mitotic growth 1; EMG1, rRNA processing, nuclear protein, ribonucleoprotein, ribosome biogenesis; 2.00A {Saccharomyces cerevisiae} SCOP: c.116.1.6 PDB: 2v3k_A* Probab=99.16 E-value=1.4e-11 Score=96.72 Aligned_cols=108 Identities=11% Similarity=0.169 Sum_probs=76.7 Q ss_pred CCCEEEEEECCHHHC--CCCCCEEE-----------------ECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 496599996025635--89851353-----------------11306888617750588999998753114778308998 Q gi|254780714|r 30 CNLWSMDAIQIRNFS--TDRHHSVD-----------------DTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILM 90 (236) Q Consensus 30 ~gli~i~~~dlRdfs--~~kh~~VD-----------------D~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~l 90 (236) .|++++.+|...+.- .+.+-+|= --+..+|+-++|+. +.+.+. .....+.++|+| T Consensus 107 ~G~L~VYIhT~~~~lI~V~P~~RiPRty~RF~gLM~qLL~k~~I~~~~~~~~Llkv--Iknpvt----d~lp~~~r~I~L 180 (258) T 2v3j_A 107 AGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKV--IKNPIT----DHLPTKCRKVTL 180 (258) T ss_dssp TTCEEEEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEC---CCEEEEE--ECSCGG----GTSCSSEEEEEE T ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEE--EECCCC----CCCCCCCEEEEE T ss_conf 69558999926998999899876896888999999999864875568886553454--306510----037899989998 Q ss_pred CCCCCEEC-HHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECC Q ss_conf 79987604-899999730287599941501144899974045310033401117 Q gi|254780714|r 91 SPRGKTLT-QKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSG 143 (236) Q Consensus 91 SP~Gk~l~-Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsG 143 (236) ||+|++++ ++.+++++..++++|+||+|++.|+|+.+.|+|++||||||.||. T Consensus 181 S~~G~~v~~~~~a~~l~~~~~i~~vIGafa~Gd~~~~~~yvde~ISISdYpLSa 234 (258) T 2v3j_A 181 SFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSA 234 (258) T ss_dssp CTTSCBCCHHHHHHTSCTTCEEEEEEECSSSCCTTTTTTTCSCEEBSCSSCCCH T ss_pred CCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHCEEEEEEECCCHHH T ss_conf 998766379999987344798799981354898551200050589972885419 No 7 >1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3 Probab=97.48 E-value=0.00064 Score=46.09 Aligned_cols=135 Identities=16% Similarity=0.325 Sum_probs=95.0 Q ss_pred CCEEEEEEEECHHHHHHHHCCCH---HHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHH Q ss_conf 95458998518356445640336---799997496599996025635898513531130688861775058899999875 Q gi|254780714|r 1 MTFHASILTLYPEMFPGHLEKSV---AGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAV 77 (236) Q Consensus 1 M~Mki~IITlFPe~f~~~l~~sI---igkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~ 77 (236) |.|+|.|+++= .+ ++++..++ .+| + +..++++++.+.+. +.+..+ ....+.-+.+. T Consensus 1 m~MkI~Ii~vG-K~-~~~~~~~i~~Y~KR-l-~~~~~i~iielk~~---~~~~~~--------------~~~~~E~~~il 59 (163) T 1o6d_A 1 MSLRVRIAVIG-KL-DGFIKEGIKHYEKF-L-RRFCKPEVLEIKRV---HRGSIE--------------EIVRKETEDLT 59 (163) T ss_dssp --CEEEEEEES-CC-CHHHHHHHHHHHHH-H-TTTCEEEEEEECCC---CCSCHH--------------HHHHHHHHHHH T ss_pred CCCEEEEEEEE-CC-CHHHHHHHHHHHHH-H-CCCCCCEEEEECCC---CCCCHH--------------HHHHHHHHHHH T ss_conf 95389999970-85-89999999999998-3-76688427872246---777999--------------99999999999 Q ss_pred HHCCCCCCCEEEECCCCCEECHHHHHHHHH-----CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHH Q ss_conf 311477830899879987604899999730-----287599941501144899974045310033401117327799999 Q gi|254780714|r 78 SQYTHEDIPRILMSPRGKTLTQKRVRQLSQ-----KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILL 152 (236) Q Consensus 78 ~~~~~~~~~vI~lSP~Gk~l~Q~~a~~ls~-----~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~ 152 (236) ++. .++..+|+|.+.|+.++-....++-+ ..+++|+-|==+|+++.+.+ .+++.+|+|+..++ -+++.++++ T Consensus 60 ~~i-~~~~~vI~LDe~Gk~~sS~~fA~~L~~~~~~g~~i~FvIGGa~Gl~~~~~~-~a~~~lSlS~mT~p-H~larv~L~ 136 (163) T 1o6d_A 60 NRI-LPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFA-KAHRVFSLSKMTFT-HGMTVLIVL 136 (163) T ss_dssp TTC-CTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGG-GCSEEEECCSSCCC-HHHHHHHHH T ss_pred HCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH-HHCCEEECCCCCCH-HHHHHHHHH T ss_conf 507-999889997478787786999999999983688569999678887999998-61868956888861-899999999 Q ss_pred HHHHHHH Q ss_conf 9999850 Q gi|254780714|r 153 DAVVRLL 159 (236) Q Consensus 153 dai~Rli 159 (236) |-+-|-. T Consensus 137 EQiYRa~ 143 (163) T 1o6d_A 137 EQIFRAF 143 (163) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 8 >1vh0_A Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} SCOP: c.116.1.3 Probab=97.25 E-value=0.0019 Score=42.93 Aligned_cols=140 Identities=14% Similarity=0.280 Sum_probs=92.1 Q ss_pred CCEEEEEEEE--C-HHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECH-HHHHHHHHH Q ss_conf 9545899851--8-35644564033679999749659999602563589851353113068886177505-889999987 Q gi|254780714|r 1 MTFHASILTL--Y-PEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVD-ILGKAIDHA 76 (236) Q Consensus 1 M~Mki~IITl--F-Pe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~e-pi~~ai~~~ 76 (236) |.|+|.|+++ . +..+...++. -.+|- ++.+.++.+.+.+-...++..--+ .+ ...+--+.+ T Consensus 1 m~Mki~Ii~iGk~k~~~~~~~i~~-Y~kRl--~~~~~i~~~el~~~k~~~~~~~~~------------~~~~~~~E~~~i 65 (161) T 1vh0_A 1 MSLKITILAVGKLKEKYWKQAIAE-YEKRL--GPYTKIDIIEVPDEKAPENMSDKE------------IEQVKEKEGQRI 65 (161) T ss_dssp --CEEEEEEESCCCCHHHHHHHHH-HHHHH--GGGSEEEEEEECCCCCCSSCCHHH------------HHHHHHHHHHHH T ss_pred CCCEEEEEEECCCCCHHHHHHHHH-HHHHC--CCCCCEEEEEECCCCCCCCCCHHH------------HHHHHHHHHHHH T ss_conf 913799999647397799999999-99965--843583699955766754445332------------999999999999 Q ss_pred HHHCCCCCCCEEEECCCCCEECHHH-HHHHHH-----CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHH Q ss_conf 5311477830899879987604899-999730-----2875999415011448999740453100334011173277999 Q gi|254780714|r 77 VSQYTHEDIPRILMSPRGKTLTQKR-VRQLSQ-----KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALI 150 (236) Q Consensus 77 ~~~~~~~~~~vI~lSP~Gk~l~Q~~-a~~ls~-----~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v 150 (236) .++. .++..+|.|.+.|+.++-.. |+.+.+ ..+++|+-|==+|+++-+.+. .++.+|+|+..++- |+|.++ T Consensus 66 l~~i-~~~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa~G~~~~~~~~-a~~~lSls~mTfpH-~lar~~ 142 (161) T 1vh0_A 66 LAKI-KPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR-SNYALSFSKMTFPH-QMMRVV 142 (161) T ss_dssp HHTS-CTTSEEEEEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHHH-CSEEECSCSSCCCH-HHHHHH T ss_pred HHHH-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH-CCCEEECCCCCCCH-HHHHHH T ss_conf 9861-89987999958988888699999999999749974899946875548799985-38878756898748-999999 Q ss_pred HHHHHHHH Q ss_conf 99999985 Q gi|254780714|r 151 LLDAVVRL 158 (236) Q Consensus 151 ~~dai~Rl 158 (236) ++|-+-|- T Consensus 143 l~EQlYRa 150 (161) T 1vh0_A 143 LIEQVYRA 150 (161) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 9 >1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3 Probab=96.73 E-value=0.016 Score=36.80 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=89.2 Q ss_pred EEEEEEEECHHHHHHHHCCC---HHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHH-HHHHHHHHHH Q ss_conf 45899851835644564033---6799997496599996025635898513531130688861775058-8999998753 Q gi|254780714|r 3 FHASILTLYPEMFPGHLEKS---VAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDI-LGKAIDHAVS 78 (236) Q Consensus 3 Mki~IITlFPe~f~~~l~~s---IigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~ep-i~~ai~~~~~ 78 (236) |+|.||++=--.- .+.... -.+|- +..+.++++.+.+....+..+.- .++- ..+.-+.+.+ T Consensus 1 MkI~Ii~iGk~k~-~~~~~~i~~Y~kRl--~~~~~~~~ie~~~~k~~~~~~~~------------~~~~~~~kE~~~il~ 65 (167) T 1to0_A 1 MNINIVTIGKLKE-KYLKQGIEEYTKRL--SAYAKIDIIELPDEKAPENLSDQ------------DMKIIKDKEGDRILS 65 (167) T ss_dssp CEEEEEEESCCCC-HHHHHHHHHHHHHH--TTTSEEEEEEECCCCC---------------------CHHHHHHHHHHHT T ss_pred CEEEEEEECCCCC-HHHHHHHHHHHHHC--CCCCCEEEEEECCCCCCCCCCHH------------HHHHHHHHHHHHHHH T ss_conf 9799999716397-79999999999965--87378479993476565555676------------799999999999997 Q ss_pred HCCCCCCCEEEECCCCCEECHH-HHHHHHH-----CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHH Q ss_conf 1147783089987998760489-9999730-----287599941501144899974045310033401117327799999 Q gi|254780714|r 79 QYTHEDIPRILMSPRGKTLTQK-RVRQLSQ-----KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILL 152 (236) Q Consensus 79 ~~~~~~~~vI~lSP~Gk~l~Q~-~a~~ls~-----~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~ 152 (236) +. .++..+|.|.+.|+.++-. .|+.+.+ ..++.|+-|==.|+++.+.+. ++..+|+|+..++ =|+|.++++ T Consensus 66 ~~-~~~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa~G~~~~~~~~-a~~~lSls~mT~p-H~larv~L~ 142 (167) T 1to0_A 66 KI-SPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKR-ADEKLSFSKMTFP-HQLMRLILV 142 (167) T ss_dssp TS-CTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHH-CSEEEESCSSCCC-HHHHHHHHH T ss_pred HC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH-CCCEEECCCCCCC-HHHHHHHHH T ss_conf 27-99987999818997538999999999998659962899966888889889962-6857765788861-899999999 Q ss_pred HHHHHHH Q ss_conf 9999850 Q gi|254780714|r 153 DAVVRLL 159 (236) Q Consensus 153 dai~Rli 159 (236) |-+-|-. T Consensus 143 EQlYRa~ 149 (167) T 1to0_A 143 EQIYRAF 149 (167) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 10 >1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3 Probab=94.25 E-value=0.064 Score=32.84 Aligned_cols=135 Identities=13% Similarity=0.180 Sum_probs=84.7 Q ss_pred EEEEEEEEC---HHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHH Q ss_conf 458998518---35644564033679999749659999602563589851353113068886177505889999987531 Q gi|254780714|r 3 FHASILTLY---PEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQ 79 (236) Q Consensus 3 Mki~IITlF---Pe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~ 79 (236) |+|.|+++= |..+....+.- .+| + +..+.++.+.+++-...++..++ ....+.-+.+.+. T Consensus 1 Mki~Ii~vGk~~~~~~~~~i~~Y-~kR-l-~~~~~~~~ie~~~~~~~~~~~~~--------------~~~~~E~~~il~~ 63 (155) T 1ns5_A 1 MKLQLVAVGTKMPDWVQTGFTEY-LRR-F-PKDMPFELIEIPAGKRGKNADIK--------------RILDKEGEQMLAA 63 (155) T ss_dssp CCEEEEEECSCCCHHHHHHHHHH-HTT-S-CTTSCEEEEEECCCCCCTTCCHH--------------HHHHHHHHHHHHH T ss_pred CEEEEEEECCCCCHHHHHHHHHH-HHH-C-CCCCCEEEEEECCCCCCCCCCHH--------------HHHHHHHHHHHHH T ss_conf 96999997374967999999999-997-4-86677379994686677630499--------------9999999999974 Q ss_pred CCCCCCCEEEECCCCCEECHHH-HHHHHH----CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHH Q ss_conf 1477830899879987604899-999730----28759994150114489997404531003340111732779999999 Q gi|254780714|r 80 YTHEDIPRILMSPRGKTLTQKR-VRQLSQ----KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDA 154 (236) Q Consensus 80 ~~~~~~~vI~lSP~Gk~l~Q~~-a~~ls~----~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~da 154 (236) .. +..+|.|...|+.++-.. |+.+.+ ..+++|+-|==+|+|+.+... ++..+|+|+.+++ -|++.++++|- T Consensus 64 ~~--~~~~I~LDe~Gk~lsS~~fA~~l~~~~~~g~~i~fiIGGa~G~~~~~~~~-a~~~lSls~mT~p-H~larv~l~EQ 139 (155) T 1ns5_A 64 AG--KNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAA-AEQSWSLSALTLP-HPLVRVLVAES 139 (155) T ss_dssp HT--TSEEEEEEEEEECCCHHHHHHHHHHHHHHCSCEEEEECBTTBCCHHHHHH-CSEEECCCSSCCC-HHHHHHHHHHH T ss_pred CC--CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH-HCCEEECCCCCCC-HHHHHHHHHHH T ss_conf 89--98589967899615789999999999965998799996787558899985-1958867799985-89999999999 Q ss_pred HHHH Q ss_conf 9985 Q gi|254780714|r 155 VVRL 158 (236) Q Consensus 155 i~Rl 158 (236) +-|- T Consensus 140 lYRa 143 (155) T 1ns5_A 140 LYRA 143 (155) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 11 >1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5 Probab=57.63 E-value=10 Score=18.23 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=32.3 Q ss_pred CCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCE-ECHHHHHHHHHCC-CEEEEECCCHHHHHHHHH Q ss_conf 6888617750588999998753114778308998799876-0489999973028-759994150114489997 Q gi|254780714|r 57 GGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKT-LTQKRVRQLSQKL-GVIIVCGRFEGIDERIIE 127 (236) Q Consensus 57 GGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~-l~Q~~a~~ls~~~-~liliCGrYEGiDeRvid 127 (236) |||.||.|++ ++..+.+ +....+.+++ + |.|.- -.-+-|..+.++. --.++-|+-|=|-+..-+ T Consensus 2 ~~~~~~~~~s--~~~~l~~---~~~~~~krIv-f-aeg~d~rvL~Aa~~~~~~gi~~PILvG~~~~I~~~~~~ 67 (337) T 1r5j_A 2 GGGGGMSIRS--LFGGLRE---KILGKNMKIV-F-PEGNDERVVRAAARLKFEGLLEPIILGQSEEVRNLLTK 67 (337) T ss_dssp -----CCHHH--HHHHHHH---HHTTSCCEEE-E-SCSSCHHHHHHHHHHHTTTSCEEEEBSCHHHHHHHHHH T ss_pred CCCCCEEHHH--HHHHHHH---HHHHCCCEEE-E-ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH T ss_conf 7521114999--9999999---9851899899-8-08799899999999998699689997799999999997 No 12 >2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7 Probab=51.98 E-value=13 Score=17.49 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=33.7 Q ss_pred CCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHH---HHHHHCCCCCEEE Q ss_conf 8617750588999998753114778308998799876048999997302875999415011448---9997404531003 Q gi|254780714|r 60 AGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDE---RIIEARDLEEISV 136 (236) Q Consensus 60 ~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDe---Rvid~~~d~eiSi 136 (236) ||-...-.-+.+.+++..+ ...++||...|+.+... .-.++.+||-|-=.|+.+ .+++.+..+.||+ T Consensus 105 pGi~v~~~~~e~~l~e~~~-----~~~~~~L~e~G~~i~~~-----~~~~~~~FiL~Dh~~l~~~e~~~L~~~~~~~iSL 174 (197) T 2qmm_A 105 SGVYVSRKGLEELIEELSE-----KYSIIYLKEDGVDISNA-----QLPPNPLFVIGDHEGLTEEQEKVVERYAALKLSL 174 (197) T ss_dssp TTEEEECCCHHHHHHHHHH-----HSEEEEEEEEEEEGGGS-----CCCSSEEEEEECTTCCCHHHHHHHHTTCSEEEEC T ss_pred CCEEEECCCHHHHHHHHHC-----CCCEEEECCCCCCCCCC-----CCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEC T ss_conf 8989918899999999873-----89589987879761234-----5799987997289998877999886517703651 Q ss_pred HHEEEC Q ss_conf 340111 Q gi|254780714|r 137 GDYILS 142 (236) Q Consensus 137 GDyVLs 142 (236) |---|- T Consensus 175 Gp~~L~ 180 (197) T 2qmm_A 175 SPLSLL 180 (197) T ss_dssp CSSCCC T ss_pred CCCCCC T ss_conf 641016 No 13 >1zgg_A Putative low molecular weight protein-tyrosine- phosphatase YWLE; alpha/beta, four-stranded parallel beta sheet, structural genomics; NMR {Bacillus subtilis} Probab=50.27 E-value=8 Score=18.94 Aligned_cols=19 Identities=0% Similarity=-0.073 Sum_probs=10.7 Q ss_pred HHHHHHHHCCCHHHHHHHC Q ss_conf 3564456403367999974 Q gi|254780714|r 12 PEMFPGHLEKSVAGKALAC 30 (236) Q Consensus 12 Pe~f~~~l~~sIigkA~~~ 30 (236) =+...|++...++.+..++ T Consensus 9 gN~cRSpmAE~i~~~~~~~ 27 (150) T 1zgg_A 9 GNTCRSPMAEALFKSIAER 27 (150) T ss_dssp TSTTTHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 9548999999999999997 No 14 >3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str} Probab=44.41 E-value=15 Score=17.23 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=59.1 Q ss_pred CCCCEEEECCCCCEECHHHHHHHHHCC--CEEEEECCCHHHHHHHHHHC----CCCCEEEHHEEECCCCHHHHHHHHHHH Q ss_conf 783089987998760489999973028--75999415011448999740----453100334011173277999999999 Q gi|254780714|r 83 EDIPRILMSPRGKTLTQKRVRQLSQKL--GVIIVCGRFEGIDERIIEAR----DLEEISVGDYILSGGEPAALILLDAVV 156 (236) Q Consensus 83 ~~~~vI~lSP~Gk~l~Q~~a~~ls~~~--~liliCGrYEGiDeRvid~~----~d~eiSiGDyVLsGGEl~a~v~~dai~ 156 (236) ++-.+|..|-.|+.-.--.+-+.+++. .++.|++.-+.--.+.-|.. .+++.....++=+.-+++.|+++|+++ T Consensus 92 ~~Dv~I~iS~SG~t~e~i~~~~~ak~~g~~vI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~tsS~~~~l~v~D~L~ 171 (201) T 3fxa_A 92 KEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVI 171 (201) T ss_dssp TTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCSCCCSTTSCSCHHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 78889987899995789999999998398089983689997534478678656102202478787499999999999999 Q ss_pred HHHCCCCCCCCCCCCCCHH Q ss_conf 8505746782223344011 Q gi|254780714|r 157 RLLPGVLGNQQSTIHESFE 175 (236) Q Consensus 157 RlipGvlg~~~S~~~eSf~ 175 (236) -.+ .+......|.|. T Consensus 172 ~~l----~~~~~~~~e~f~ 186 (201) T 3fxa_A 172 VCL----MTYMNYTKEQFS 186 (201) T ss_dssp HHH----HHHTTCCHHHHH T ss_pred HHH----HHHHCCCHHHHH T ss_conf 999----998098999995 No 15 >3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase, hydrolase; 2.05A {Thermotoga maritima} Probab=41.45 E-value=19 Score=16.44 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=33.3 Q ss_pred EEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEC Q ss_conf 996025635898513531130688861775058899999875311477830899879987604 Q gi|254780714|r 36 DAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLT 98 (236) Q Consensus 36 ~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP~Gk~l~ 98 (236) +++|.|||+-.--.+.||++ .+.+||+++.+... -+|++ |.|.=+. T Consensus 26 ~~vnV~DfGA~gDG~tDdT~------------AIq~AI~a~~~~gG----g~V~i-P~GtYl~ 71 (448) T 3jur_A 26 REVNLLDFGARGDGRTDCSE------------SFKRAIEELSKQGG----GRLIV-PEGVFLT 71 (448) T ss_dssp CEEEGGGGTCCCEEEEECHH------------HHHHHHHHHHHHTC----EEEEE-CSSEEEE T ss_pred CEEEEEECCCCCCCCHHHHH------------HHHHHHHHHHHCCC----CEEEE-CCCEEEE T ss_conf 77975455878989624299------------99999997774399----89999-9984998 No 16 >3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Probab=37.65 E-value=8.2 Score=18.90 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=34.7 Q ss_pred ECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCC Q ss_conf 879987604899999730287599941501144899974045 Q gi|254780714|r 90 MSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDL 131 (236) Q Consensus 90 lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d 131 (236) .||.|..+.++++.+|++. ++++|+|=-.|||.-.-....+ T Consensus 138 ~s~yg~~~a~~l~~~la~~-g~~VVSGlA~GID~~AH~~aL~ 178 (382) T 3maj_A 138 ASGAGLKFAGQLAADLGAA-GFVVISGLARGIDQAAHRASLS 178 (382) T ss_dssp CCHHHHHHHHHHHHHHHHH-TCEEEECCCTTHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHHHHC-CEEEECCCCCCCCHHHHHHHHC T ss_conf 9976999999999999878-9799815656821899874032 No 17 >2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7 Probab=37.26 E-value=20 Score=16.34 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=36.8 Q ss_pred HHCCCEEEEECCC------HHHHHHHHHHC----CCCCEEEHHEEECCCCHHHHHHHHHHHHH---HCCCCCCCCCCCCC Q ss_conf 3028759994150------11448999740----45310033401117327799999999985---05746782223344 Q gi|254780714|r 106 SQKLGVIIVCGRF------EGIDERIIEAR----DLEEISVGDYILSGGEPAALILLDAVVRL---LPGVLGNQQSTIHE 172 (236) Q Consensus 106 s~~~~liliCGrY------EGiDeRvid~~----~d~eiSiGDyVLsGGEl~a~v~~dai~Rl---ipGvlg~~~S~~~e 172 (236) +....||+|+|-- ..+-+++.+.+ +|.-+..||++ ..-++|-+-.+ +..|.||.+....+ T Consensus 22 ~~~~~lilvIsDtHip~r~~~lp~~~~~~l~~~kvD~Iih~GDi~-------~~e~l~~L~~l~~~v~~V~GN~D~~~~~ 94 (215) T 2a22_A 22 TDFGDLVLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVC-------SQEYVEMLKNITKNVYIVSGDLDSAIFN 94 (215) T ss_dssp -CCCEEEEEECCCCTTTTCSSCCGGGHHHHHCTTCCEEEECSCCC-------CHHHHHHHHHHCSCEEECCCTTCCSCCB T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCC-------CHHHHHHHHHHCCCEEEEECCCCCCHHH T ss_conf 665769999916788764014549999984746889899899999-------9899999996499769983786710100 No 18 >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Probab=33.85 E-value=25 Score=15.66 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=7.7 Q ss_pred CCHHCCCCCCCCCCCHHH Q ss_conf 401148846211167254 Q gi|254780714|r 172 ESFENGLLEFPQYTRPQI 189 (236) Q Consensus 172 eSf~~~lLe~P~YTrP~~ 189 (236) |.|..-++|+=.+=+|-. T Consensus 369 e~~~~~~lEAma~G~PVI 386 (499) T 2r60_A 369 EPFGLAPVEAMASGLPAV 386 (499) T ss_dssp BCCCSHHHHHHHTTCCEE T ss_pred CCCCHHHHHHHHCCCCEE T ss_conf 364457999998799899 No 19 >2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1 Probab=28.85 E-value=12 Score=17.86 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=10.5 Q ss_pred CCCEEEHHEEECC Q ss_conf 5310033401117 Q gi|254780714|r 131 LEEISVGDYILSG 143 (236) Q Consensus 131 d~eiSiGDyVLsG 143 (236) +.++.+|||||-- T Consensus 39 ~~~~~vGDyVLVH 51 (90) T 2ot2_A 39 NGQPRVGQWVLVH 51 (90) T ss_dssp TSCBCTTCEEEEE T ss_pred CCCCCCCCEEEEE T ss_conf 7646778899996 No 20 >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Probab=27.41 E-value=32 Score=14.96 Aligned_cols=71 Identities=10% Similarity=0.016 Sum_probs=41.1 Q ss_pred CCEE-EEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCC--CCCCEEEECCCCCCCCEEEECHHHHHHHHHH Q ss_conf 9545-89985183564456403367999974965999960256358--9851353113068886177505889999987 Q gi|254780714|r 1 MTFH-ASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFST--DRHHSVDDTPAGGGAGMVLRVDILGKAIDHA 76 (236) Q Consensus 1 M~Mk-i~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~--~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~ 76 (236) |+|| +-||.-=| .-.-|.+...+++.-++++++++.+-.. ..-...|-.-..|||.-+....|+...+.+. T Consensus 1 ~~mk~vlv~qh~~-----~e~~g~~~~~l~~~g~~~~v~~~~~~~~~P~~~~~~dglii~Gg~~~~~d~~p~~~~~~~~ 74 (250) T 3m3p_A 1 MSLKPVMIIQFSA-----SEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDLPWMPTLLAL 74 (250) T ss_dssp -CCCCEEEEESSS-----SCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHH T ss_pred CCCCEEEEEECCC-----CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHH T ss_conf 9986499995799-----9981399999985899799997899987877763389899909998777877658999999 No 21 >1xww_A Low molecular weight phosphotyrosine protein phosphatase; hydrolase; 1.63A {Homo sapiens} PDB: 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A 5pnt_A* Probab=26.68 E-value=33 Score=14.87 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=10.3 Q ss_pred CHHHHHHHHCCCHHHHHHHC Q ss_conf 83564456403367999974 Q gi|254780714|r 11 YPEMFPGHLEKSVAGKALAC 30 (236) Q Consensus 11 FPe~f~~~l~~sIigkA~~~ 30 (236) .=+...|++..+++.+.+.+ T Consensus 13 tgN~cRS~mAE~il~~~~~~ 32 (157) T 1xww_A 13 LGNICRSPIAEAVFRKLVTD 32 (157) T ss_dssp SSSSSHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHH T ss_conf 98689999999999999986 No 22 >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating 1; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Probab=25.72 E-value=34 Score=14.76 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=60.4 Q ss_pred CCEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECC-CCCCCCEEEECHHHHHHHHHHHHH Q ss_conf 9545899851835644564033679999749659999602563589851353113-068886177505889999987531 Q gi|254780714|r 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTP-AGGGAGMVLRVDILGKAIDHAVSQ 79 (236) Q Consensus 1 M~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~P-yGGG~GMVlk~epi~~ai~~~~~~ 79 (236) |+.+|-||-| +.....+..+-.++| +++.++|... .++++-- -+....-+.-+.-+...++.+ T Consensus 9 Ms~~IG~IGL------G~MG~~mA~nL~~~G-~~V~vydrs~------~k~~~l~~~~~~~~~~~ga~s~~~~v~~l--- 72 (497) T 2p4q_A 9 MSADFGLIGL------AVMGQNLILNAADHG-FTVCAYNRTQ------SKVDHFLANEAKGKSIIGATSIEDFISKL--- 72 (497) T ss_dssp CCCSEEEECC------SHHHHHHHHHHHHTT-CCEEEECSSS------HHHHHHHHTTTTTSSEECCSSHHHHHHTS--- T ss_pred CCCCEEEEEE------HHHHHHHHHHHHHCC-CEEEEEECCH------HHHHHHHHHCCCCCCCCCCCCHHHHHHHH--- T ss_conf 1378789826------588999999999779-9489994999------99999997036434664657588899984--- Q ss_pred CCCCCCCEEEECCCCCEECHHHHHHHHH---CCCEEEEECC--CHHHHHHHHHHCCCCCEEEHHEEECCCCHHH Q ss_conf 1477830899879987604899999730---2875999415--0114489997404531003340111732779 Q gi|254780714|r 80 YTHEDIPRILMSPRGKTLTQKRVRQLSQ---KLGVIIVCGR--FEGIDERIIEARDLEEISVGDYILSGGEPAA 148 (236) Q Consensus 80 ~~~~~~~vI~lSP~Gk~l~Q~~a~~ls~---~~~liliCGr--YEGiDeRvid~~~d~eiSiGDyVLsGGEl~a 148 (236) .. ...++.+-|.|+..++-. .+|.. ...+++-||- |+-.. |..+.....-+..=|-.+|||+-+| T Consensus 73 -~~-~d~Iil~vp~g~~v~~Vi-~~L~~~l~~g~IIID~sts~~~~s~-~~~~~l~~kgi~flda~VSGG~~gA 142 (497) T 2p4q_A 73 -KR-PRKVMLLVKAGAPVDALI-NQIVPLLEKGDIIIDGGNSHFPDSN-RRYEELKKKGILFVGSGVSGGEEGA 142 (497) T ss_dssp -CS-SCEEEECCCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHH-HHHHHHHHTTCEEEEEEEESHHHHH T ss_pred -CC-CCEEEEECCCCHHHHHHH-HHHHHHCCCCCEEEECCCCCHHHHH-HHHHHHHHCCCEEECCCCCCCHHHH T ss_conf -68-998999759948999999-9998637799989957999768999-9999987449767344345774565 No 23 >1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfamily, oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Probab=25.01 E-value=35 Score=14.68 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=55.8 Q ss_pred CCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEECC-CCCEECHHHHHHHHHC-CCE--EEEECC----CHH----HHH Q ss_conf 0688861775058899999875311477830899879-9876048999997302-875--999415----011----448 Q gi|254780714|r 56 AGGGAGMVLRVDILGKAIDHAVSQYTHEDIPRILMSP-RGKTLTQKRVRQLSQK-LGV--IIVCGR----FEG----IDE 123 (236) Q Consensus 56 yGGG~GMVlk~epi~~ai~~~~~~~~~~~~~vI~lSP-~Gk~l~Q~~a~~ls~~-~~l--iliCGr----YEG----iDe 123 (236) .+||.|+. |+...++++.++....+..+++-.. ....+-.....+|+.. .++ +.+..+ ++| +.+ T Consensus 108 iAgG~Git----P~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~G~v~~ 183 (232) T 1qfj_A 108 IAGGTGFS----YARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLT 183 (232) T ss_dssp EEETTCHH----HHHHHHHHHHHHCTTCCEEEEEEESSGGGCTTHHHHHHHHHHCTTEEEEEEESSCCTTCCSEESCHHH T ss_pred EECCCCCC----HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEHHH T ss_conf 94698504----39999999997199954999941157788788999999998689969999986786554871601789 Q ss_pred HHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHH-C-CCCCCCCCCCCCCHH Q ss_conf 999740453100334011173277999999999850-5-746782223344011 Q gi|254780714|r 124 RIIEARDLEEISVGDYILSGGEPAALILLDAVVRLL-P-GVLGNQQSTIHESFE 175 (236) Q Consensus 124 Rvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~Rli-p-Gvlg~~~S~~~eSf~ 175 (236) .+++.+.+. +=-++.+.| - |+ |++++.+.+ - .-+ .++.+..|+|+ T Consensus 184 ~~~~~~~~~--~~~~vyiCG-p-~~--mv~~v~~~l~~~~gv-~~~~i~~e~F~ 230 (232) T 1qfj_A 184 AVLQDHGTL--AEHDIYIAG-R-FE--MAKIARDLFCSERNA-REDRLFGDAFA 230 (232) T ss_dssp HHHHHCSCC--TTCEEEEES-C-HH--HHHHHHHHHHHHSCC-CGGGEECTHHH T ss_pred HHHHHCCCC--CCCEEEEEC-C-HH--HHHHHHHHHHHHCCC-CHHHEEEEEEE T ss_conf 999657886--689999979-9-99--999999999987599-98997999678 No 24 >3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein structure initiative; 1.85A {Shewanella oneidensis mr-1} SCOP: b.40.14.1 Probab=24.19 E-value=4 Score=20.97 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=19.7 Q ss_pred CHHHHHHHHHHCCCCCEEEHHEEECCC Q ss_conf 011448999740453100334011173 Q gi|254780714|r 118 FEGIDERIIEARDLEEISVGDYILSGG 144 (236) Q Consensus 118 YEGiDeRvid~~~d~eiSiGDyVLsGG 144 (236) |.|+-.+|.-.++++++.+|||||.-- T Consensus 44 ~~Gv~reV~l~Lv~e~v~vGDyVLVHa 70 (103) T 3d3r_A 44 TLGVRRDVSSHLMTEPLAIGDYVLIHI 70 (103) T ss_dssp ETTEEEEEECTTBSSCCCTTCEEEEEE T ss_pred CCCEEEEEEEECCCCCCCCCCEEEEEC T ss_conf 799499998101567888998999951 No 25 >2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A Probab=23.38 E-value=16 Score=16.91 Aligned_cols=11 Identities=55% Similarity=0.909 Sum_probs=9.1 Q ss_pred ECCCCHHHHHH Q ss_conf 11732779999 Q gi|254780714|r 141 LSGGEPAALIL 151 (236) Q Consensus 141 LsGGEl~a~v~ 151 (236) |||||+.|.++ T Consensus 8 ltggeivavif 18 (38) T 2k1k_A 8 LTGGEIVAVIF 18 (38) T ss_dssp CCHHHHHHHHH T ss_pred CCCCEEHHHHH T ss_conf 76763089999 No 26 >1huf_A Tyrosine phosphatase YOPH; helical bundle, beta hairpin, hydrolase; 2.00A {Yersinia pestis} SCOP: d.195.1.1 PDB: 1k46_A 1m0v_A* Probab=21.13 E-value=42 Score=14.18 Aligned_cols=110 Identities=21% Similarity=0.313 Sum_probs=50.9 Q ss_pred CCCCCEEEECHHHHHHHHHHHHHCCCCCCCE----E----EECCCCCEECH-------HHHHHHHH-CCCEEEEECCCHH Q ss_conf 6888617750588999998753114778308----9----98799876048-------99999730-2875999415011 Q gi|254780714|r 57 GGGAGMVLRVDILGKAIDHAVSQYTHEDIPR----I----LMSPRGKTLTQ-------KRVRQLSQ-KLGVIIVCGRFEG 120 (236) Q Consensus 57 GGG~GMVlk~epi~~ai~~~~~~~~~~~~~v----I----~lSP~Gk~l~Q-------~~a~~ls~-~~~liliCGrYEG 120 (236) |||.||=|+..-+..-+..+....+++..-. + --|-||-+.+. ..|.+..+ -.++++-.----- T Consensus 1 ~~~~~m~lsi~~Lh~qvs~laeq~~Gd~~GkLrg~vaan~q~sfQglTv~~gar~~EKaFA~~VL~Hv~n~~Ln~~D~A~ 80 (140) T 1huf_A 1 GGGGGMNLSLSDLHRQVSRLVQQESGDCTGKLRGNVAANKETTFQGLTIASGARESEKVFAQTVLSHVANVVLTQEDTAK 80 (140) T ss_dssp -------CCHHHHHHHHHHHHHTTTTTSBEEESSSEEECCSSCCCCCCGGGTCCHHHHHHHHHHHHHTTTCCBCHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH T ss_conf 96330356299999999999983086401221223311441422436741675237899999999998875506787999 Q ss_pred HHHHHH----HHCCCCCEEEHHEEECCCC------HHHHHHHHHHHHHHCCCCCCC Q ss_conf 448999----7404531003340111732------779999999998505746782 Q gi|254780714|r 121 IDERII----EARDLEEISVGDYILSGGE------PAALILLDAVVRLLPGVLGNQ 166 (236) Q Consensus 121 iDeRvi----d~~~d~eiSiGDyVLsGGE------l~a~v~~dai~RlipGvlg~~ 166 (236) .=+|-+ ..|+-+.+--|.-+|.|=- --|-+++||..|.-.|.-|.. T Consensus 81 Ll~~a~r~~~nNfeL~q~g~g~s~lvgLRsdQltL~DAK~LLeAamRq~~~a~g~~ 136 (140) T 1huf_A 81 LLQSTVKHNLNNYDLRSVGNGNSVLVSLRSDQMTLQDAKVLLEAALRQESGARGHH 136 (140) T ss_dssp HHHHHHHHTCCCEEEEEEETTEEEEEEESSSCCBHHHHHHHHHHHHHHHC------ T ss_pred HHHHHHHCCCCCEEEEECCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCCC T ss_conf 80676752876536551578726998862000004688999999986662246655 Done!