HHSEARCH alignment of GI: 254780714 and SCOP domain: d1o6da_

Alignment
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=96.76  E-value=0.0056  Score=38.25  Aligned_cols=133  Identities=17%  Similarity=0.309  Sum_probs=91.3

Q ss_pred             EEEEEEEECHHHHHHHHCCCHHH--HHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHC
Q ss_conf             45899851835644564033679--9997496599996025635898513531130688861775058899999875311
Q gi|254780714|r    3 FHASILTLYPEMFPGHLEKSVAG--KALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQY   80 (236)
Q Consensus         3 Mki~IITlFPe~f~~~l~~sIig--kA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~   80 (236)
                      |+|.|+++= .+ +.++..++--  |=+ +..+.++.+.+.+-   +++..              .+...+.-+.+.++.
T Consensus         1 Mki~Ii~iG-K~-~~~~~~~i~~Y~kRl-~~~~~~~iielk~~---~~~~~--------------~~~~~~E~~~il~~i   60 (147)
T d1o6da_           1 LRVRIAVIG-KL-DGFIKEGIKHYEKFL-RRFCKPEVLEIKRV---HRGSI--------------EEIVRKETEDLTNRI   60 (147)
T ss_dssp             CEEEEEEES-CC-CHHHHHHHHHHHHHH-TTTCEEEEEEECCC---CCSCH--------------HHHHHHHHHHHHTTC
T ss_pred             CEEEEEEEE-CC-CHHHHHHHHHHHHHH-CCCCCCEEEEECCC---CCCCH--------------HHHHHHHHHHHHCCC
T ss_conf             989999970-86-899999999999983-67788508983144---57899--------------999999998875247


Q ss_pred             CCCCCCEEEECCCCCEECHHHHHH-HHH----CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHH
Q ss_conf             477830899879987604899999-730----287599941501144899974045310033401117327799999999
Q gi|254780714|r   81 THEDIPRILMSPRGKTLTQKRVRQ-LSQ----KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAV  155 (236)
Q Consensus        81 ~~~~~~vI~lSP~Gk~l~Q~~a~~-ls~----~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai  155 (236)
                       .++..+|.|.+.|+.++-....+ +.+    .++++|+-|==+|+++.+.+. +++.+|+|+..++ -+++.++++|-+
T Consensus        61 -~~~~~~I~LDe~Gk~~sS~~fA~~l~~~~~~g~~i~FiIGGa~Gl~~~~~~~-a~~~lSls~mT~p-H~l~rv~l~EQl  137 (147)
T d1o6da_          61 -LPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFAK-AHRVFSLSKMTFT-HGMTVLIVLEQI  137 (147)
T ss_dssp             -CTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGGG-CSEEEECCSSCCC-HHHHHHHHHHHH
T ss_pred             -CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH-CCCEEECCCCCCH-HHHHHHHHHHHH
T ss_conf             -9998799971466776889999999999844999789997888889899973-0868957757664-799999999999


Q ss_pred             HHH
Q ss_conf             985
Q gi|254780714|r  156 VRL  158 (236)
Q Consensus       156 ~Rl  158 (236)
                      -|-
T Consensus       138 YRa  140 (147)
T d1o6da_         138 FRA  140 (147)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: YbeA-like
domain: Hypothetical protein TM0844
species: Thermotoga maritima [TaxId: 2336]