HHSEARCH alignment of GI: 254780714 and SCOP domain: d1vh0a_

Alignment
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=95.21  E-value=0.014  Score=35.69  Aligned_cols=138  Identities=14%  Similarity=0.250  Sum_probs=87.7

Q ss_pred             EEEEEEEE--CH-HHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHH-HHHHHHHHHH
Q ss_conf             45899851--83-56445640336799997496599996025635898513531130688861775058-8999998753
Q gi|254780714|r    3 FHASILTL--YP-EMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDI-LGKAIDHAVS   78 (236)
Q Consensus         3 Mki~IITl--FP-e~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~ep-i~~ai~~~~~   78 (236)
                      |+|.|+++  .+ ..+.. +-.--.+| + +..+.++.+.+++-...++.+--|            ++- ..+--+.+.+
T Consensus         1 MkI~Ii~iGk~k~~~~~~-~i~~Y~kR-l-~~~~~i~~~ei~~~k~~~~~~~~~------------~~~~~~~E~~~il~   65 (157)
T d1vh0a_           1 LKITILAVGKLKEKYWKQ-AIAEYEKR-L-GPYTKIDIIEVPDEKAPENMSDKE------------IEQVKEKEGQRILA   65 (157)
T ss_dssp             CEEEEEEESCCCCHHHHH-HHHHHHHH-H-GGGSEEEEEEECCCCCCSSCCHHH------------HHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCCHHHHH-HHHHHHHH-C-CCCCCCEEEECCCCCCCCCCCHHH------------HHHHHHHHHHHHHH
T ss_conf             979999963759779999-99999987-3-741481389714545743334432------------99999998899997


Q ss_pred             HCCCCCCCEEEECCCCCEECHH-HHHHHHH-----CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHH
Q ss_conf             1147783089987998760489-9999730-----287599941501144899974045310033401117327799999
Q gi|254780714|r   79 QYTHEDIPRILMSPRGKTLTQK-RVRQLSQ-----KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILL  152 (236)
Q Consensus        79 ~~~~~~~~vI~lSP~Gk~l~Q~-~a~~ls~-----~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~  152 (236)
                      .. .++..+|.|.+.|+.++-. .|+.+.+     ..+++|+-|==.|+|+.+.+. +|..+|+|+..++- ++|.++++
T Consensus        66 ~i-~~~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa~G~~~~~~~~-a~~~lSls~mT~pH-~larv~l~  142 (157)
T d1vh0a_          66 KI-KPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR-SNYALSFSKMTFPH-QMMRVVLI  142 (157)
T ss_dssp             TS-CTTSEEEEEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHHH-CSEEECSCSSCCCH-HHHHHHHH
T ss_pred             HC-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH-CCCEEECCCCCCHH-HHHHHHHH
T ss_conf             33-89982798742545678899999999998615785699976887668789963-39779773377535-99999999


Q ss_pred             HHHHHH
Q ss_conf             999985
Q gi|254780714|r  153 DAVVRL  158 (236)
Q Consensus       153 dai~Rl  158 (236)
                      |-+-|-
T Consensus       143 EQlYRa  148 (157)
T d1vh0a_         143 EQVYRA  148 (157)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: YbeA-like
domain: Hypothetical protein SAV0024/SA0023
species: Staphylococcus aureus [TaxId: 1280]