RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780714|ref|YP_003065127.1| tRNA
(guanine-N(1)-)-methyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
         (236 letters)



>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid,
           seattle structural genomics center for infectious
           diseases; 2.50A {Bartonella henselae} (A:1-168)
          Length = 168

 Score =  245 bits (627), Expect = 4e-66
 Identities = 108/172 (62%), Positives = 134/172 (77%), Gaps = 5/172 (2%)

Query: 1   MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA 60
           M F A +LTLYPEMFPG L  S+AG+AL   +WS++ +QIR+F+ D+HHSVDDTPAGGGA
Sbjct: 2   MKFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFALDKHHSVDDTPAGGGA 61

Query: 61  GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG 120
           GMV+R D+L  A+D         D PR+LMSPRG+ L Q   R L++  GV +VCGRFEG
Sbjct: 62  GMVMRADVLAAALDSC-----PNDSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEG 116

Query: 121 IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHE 172
           +DERIIEAR+LEE+S+GDYILSGGE AAL+LLDA+VRLLPGV+GN+ S   E
Sbjct: 117 VDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLPGVMGNEISAKCE 168


>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA
           (guanine-7-)-methyltransferase, structural genomics,
           infectious diseases; 2.35A {Staphylococcus aureus subsp}
           (A:1-192)
          Length = 192

 Score =  244 bits (624), Expect = 9e-66
 Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 3/172 (1%)

Query: 2   TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAG 61
                 LTL+PEMF G L  S+  +A   N   ++ +  R+++ ++H+ VDD P GGG G
Sbjct: 24  AMKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQG 83

Query: 62  MVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI 121
           MVL+ + +  A++        E    ILM P+G+  + ++  +LS+   ++ +CG +EG 
Sbjct: 84  MVLKPEPVFNAMEDLDV---TEQARVILMXPQGEPFSHQKAVELSKADHIVFICGHYEGY 140

Query: 122 DERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHES 173
           DERI      +EIS+GDY+L+GGE  A+ + DA+VRL+PGVLGN+QS   +S
Sbjct: 141 DERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDS 192


>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD,
           tRNA(M1G37) methyltransferase, tRNA modification; HET:
           SAH; 1.80A {Haemophilus influenzae} (A:1-189)
          Length = 189

 Score =  243 bits (623), Expect = 1e-65
 Identities = 74/170 (43%), Positives = 106/170 (62%), Gaps = 1/170 (0%)

Query: 3   FHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGM 62
               +++L+PEMF    E  V G+A+  NL  ++    R+F+ D+H +VDD P GGG GM
Sbjct: 21  MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGM 80

Query: 63  VLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGID 122
           ++ V  L  AI  A +    E    I +SP+G+ L Q  V +L+Q   +I+VCGR+EGID
Sbjct: 81  LMMVQPLRDAIHTAKAA-AGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGID 139

Query: 123 ERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHE 172
           ER+I+    EE S+GDY+L+GGE  A+ L+DAV R +PGVLG Q S   +
Sbjct: 140 ERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEED 189


>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid,
           seattle structural genomics center for infectious
           disease; 2.25A {Anaplasma phagocytophilum HZ} (A:1-188)
          Length = 188

 Score =  243 bits (622), Expect = 1e-65
 Identities = 77/167 (46%), Positives = 116/167 (69%), Gaps = 2/167 (1%)

Query: 2   TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAG 61
           +   ++LT++P+MFPG L  S  G AL   LW+++   IR F+ ++H++VDDTP GGG G
Sbjct: 21  SMIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFANNKHNTVDDTPYGGGPG 80

Query: 62  MVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI 121
           M+LR D+LG+ ID  +S   H +   +  SPRG + TQ   RQ      + ++CGRFEGI
Sbjct: 81  MLLRADVLGRCIDEVLSL--HPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGI 138

Query: 122 DERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQS 168
           DER+++   L+E+S+GDY+LSGGE AA++++D  VR++PGV+GN +S
Sbjct: 139 DERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVPGVIGNAES 185


>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics,
           TRMD, tRNA (M1G37) methyltransferase, BSGC structure
           funded by NIH; 2.60A {Aquifex aeolicus} (A:1-171)
          Length = 171

 Score =  236 bits (604), Expect = 2e-63
 Identities = 65/172 (37%), Positives = 100/172 (58%), Gaps = 5/172 (2%)

Query: 2   TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAG 61
                +LT++P +   + E  +  +A+      +  I +R F+      VDD P GG  G
Sbjct: 5   PLRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAPKGQ--VDDVPYGGLPG 62

Query: 62  MVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI 121
           MVL+ + + +A D+ V    +     ++  P G+ L QK V +LS+K  ++I+CGR+EG+
Sbjct: 63  MVLKPEPIYEAYDYVVEN--YGKPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGV 120

Query: 122 DERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHES 173
           DER+ +  D  EIS+GD+ILSGGE  AL ++DAV R+LPGVL   QS   +S
Sbjct: 121 DERVKKIVD-MEISLGDFILSGGEIVALAVIDAVSRVLPGVLSEPQSIQEDS 171


>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid,
           seattle structural genomics center for infectious
           diseases; 2.50A {Bartonella henselae} (A:169-233)
          Length = 65

 Score = 99.0 bits (247), Expect = 5e-22
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 173 SFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKK 230
           SFENGLLE PQYTRP ++EG  IPP+L SG H+ I  WR++Q+ +LT++ RPDL +  
Sbjct: 1   SFENGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYALY 58


>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD,
           tRNA(M1G37) methyltransferase, tRNA modification; HET:
           SAH; 1.80A {Haemophilus influenzae} (A:190-274)
          Length = 85

 Score = 98.3 bits (245), Expect = 9e-22
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 173 SFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKK 230
           SF +GLL+ P YTRP++ EGL +PP+L SG HE I+KWR +QS   T   RP+LL   
Sbjct: 1   SFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGL 58


>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid,
           seattle structural genomics center for infectious
           disease; 2.25A {Anaplasma phagocytophilum HZ}
           (A:189-253)
          Length = 65

 Score = 95.1 bits (237), Expect = 8e-21
 Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 172 ESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKK 230
           ES E G LE+PQYTRP  W+G+ +P +L +G+H  I+KWR+  S ++T   RPDLL  +
Sbjct: 1   ESME-GSLEYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASLSITAARRPDLLKDR 58


>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics,
           TRMD, tRNA (M1G37) methyltransferase, BSGC structure
           funded by NIH; 2.60A {Aquifex aeolicus} (A:172-221)
          Length = 50

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 174 FENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHR 223
           F+N  L +P YTRP+ + G+ +P  L SG H+ I+ W+       T K R
Sbjct: 1   FQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKR 50


>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA
           (guanine-7-)-methyltransferase, structural genomics,
           infectious diseases; 2.35A {Staphylococcus aureus subsp}
           (A:219-269)
          Length = 51

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 201 SGDHERIKKWRKEQSFALTKKHRPDLLSK 229
           SG+H  I  WR EQ    T   RPDL+ K
Sbjct: 2   SGNHANIDAWRHEQKLIRTYNKRPDLIEK 30


>2qt3_A N-isopropylammelide isopropyl amidohydrolase;
           N-isopropylammelide isopropylaminohydrolase ATZC,
           structural genomics, NYSGXRC, target 9364B; 2.24A
           {Pseudomonas SP} (A:1-55,A:359-403)
          Length = 100

 Score = 28.0 bits (63), Expect = 1.0
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 11/84 (13%)

Query: 90  MSPRGKTL-TQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISV-GDYILSG---G 144
           MS     +     + +      + IV  R   I+ +I E    +EI   G+ +  G   G
Sbjct: 1   MSKDFDLIIRNAYLSEKDSVYDIGIVGDRIIKIEAKI-EGTVKDEIDAKGNLVSPGIEVG 59

Query: 145 EPAALILLDA-----VVRLLPGVL 163
           + A L++L++      +      L
Sbjct: 60  KKADLVVLNSLSPQWAIIDQAKRL 83


>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer,
           conformational change, D314G mutant, hydrolase; 1.12A
           {Escherichia coli} (A:1-60,A:372-413)
          Length = 102

 Score = 28.0 bits (63), Expect = 1.3
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 10/63 (15%)

Query: 111 VIIVCGRFEGIDERI-IEARDLEEISV-GDYILSG---GEPAALILLDA-----VVRLLP 160
           + +  G+   ID +  +       +      ++     G  A LI+L A      +R   
Sbjct: 26  IHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPIAAGNSANLIILPAENGFDALRRQV 85

Query: 161 GVL 163
            V 
Sbjct: 86  PVR 88


>2o3i_A Hypothetical protein; NESG, CVR68, Q7NTB2, structural
           genomics, PSI-2, protein structure initiative; 2.30A
           {Chromobacterium violaceum} (A:1-241)
          Length = 241

 Score = 25.6 bits (56), Expect = 5.8
 Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 5/41 (12%)

Query: 125 IIEARDLEEISVGDYIL-SGG----EPAALILLDAVVRLLP 160
            +   DLE +  G     SGG      A  +  +       
Sbjct: 4   ELSPSDLEPLLQGACFFGSGGGGTXISARHLAANFRKGDYY 44


>2wbn_A G2P, terminase large subunit; large terminase, nuclease,
           viral protein, DNA packaging; 1.90A {Bacillus phage
           SPP1} PDB: 2wc9_A (A:)
          Length = 212

 Score = 25.3 bits (55), Expect = 7.2
 Identities = 7/34 (20%), Positives = 10/34 (29%)

Query: 171 HESFENGLLEFPQYTRPQIWEGLAIPPILNSGDH 204
                N   EF          G  IP + +  +H
Sbjct: 157 PLRTPNIAREFENIDYQTDKNGDPIPRLEDKDNH 190


>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta,
           structural genomics, northeast structural genomics
           consortium (NESG); NMR {Enterococcus faecalis} (A:)
          Length = 96

 Score = 25.2 bits (55), Expect = 8.3
 Identities = 4/21 (19%), Positives = 7/21 (33%)

Query: 206 RIKKWRKEQSFALTKKHRPDL 226
             KK  ++Q     K    + 
Sbjct: 71  AFKKLTRKQKEQYLKTFHLEH 91


>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure,
           autostructure, northeast structural genomics consortium,
           PSI; NMR {Bacillus halodurans} (A:)
          Length = 107

 Score = 25.2 bits (55), Expect = 9.0
 Identities = 2/21 (9%), Positives = 5/21 (23%)

Query: 206 RIKKWRKEQSFALTKKHRPDL 226
            +K   + +   L        
Sbjct: 70  EVKHLSRRKKEQLVSLKGGPY 90


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,850,722
Number of extensions: 84621
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 22
Length of query: 236
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 150
Effective length of database: 2,048,819
Effective search space: 307322850
Effective search space used: 307322850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)