HHsearch results for GI: 254780715 and protein with PDBid: 2j01_T
>2j01_T 50S ribosomal protein L19; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.6 PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=100.00 E-value=4.2e-45 Score=303.76 Aligned_cols=116 Identities=42% Similarity=0.818 Sum_probs=109.4
Q ss_pred CCH---HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEE
Q ss_conf 935---89997999999760279897378998999999835887740123453543136666433886300356130289
Q gi|254780715|r 1 MNI---IDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRL 77 (141)
Q Consensus 1 Mnl---i~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~ 77 (141)
||. |+.+|.+++ +.++|+|+|||||+|++++.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++
T Consensus 1 m~~~~li~~ie~~~~-----k~~~P~f~~GDtV~V~~~i~eg~k~Riq~F~GvvI~~~~~G~~~tftvRki~~g~GVEr~ 75 (146)
T 2j01_T 1 MNRGALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERI 75 (146)
T ss_dssp CTTHHHHHHHHCCCC-----CSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHC-----CCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEE
T ss_conf 988999999999764-----157997089889999999705886314566688998737996744899998469528999
Q ss_pred EECCCCCEEEEEEEECCHHHHHHHHHHCCCCCCEEEHHHHCCCC
Q ss_conf 99107861012220002046787687508884102201200121
Q gi|254780715|r 78 FPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKR 121 (141)
Q Consensus 78 fpl~SP~i~~Iev~r~gkvRrakLyYLR~~~gk~arik~~~~~~ 121 (141)
||||||+|++|||+++|+|||||||||||+.||+|||+++....
T Consensus 76 fpl~SP~I~~IeVir~gkvRRAKLYYLR~~~gK~arike~~~~~ 119 (146)
T 2j01_T 76 FPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRK 119 (146)
T ss_dssp ECSSSSCSCCCBCCCCBCCSSSSCGGGSSSCSSSHHHHSBCCHH
T ss_pred EECCCCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 87179975779999726501445232305722476544441012