RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780715|ref|YP_003065128.1| 50S ribosomal protein L19 [Candidatus Liberibacter asiaticus str. psy62] (141 letters) >2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (M:24-166) Length = 143 Score = 144 bits (365), Expect = 4e-36 Identities = 60/121 (49%), Positives = 83/121 (68%) Query: 21 LPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPL 80 LP F PGDT+ V T + EG+++R QA+EGV IA +G G K+FTVRKIS+GEG+ R+FP Sbjct: 1 LPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF 60 Query: 81 YSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKALNEEVRRAALPEKEMS 140 SP++ +T++ RGKVRR+KLYYL++LRGKAARIK + + K + A + Sbjct: 61 ASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSDRSRVMKDAARAQQDKANASASQA 120 Query: 141 K 141 Sbjct: 121 A 121 >3i1n_P 50S ribosomal protein L19; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_P 3e1b_I 3e1d_I 1vs6_P 3i1p_P 3i1r_P 3i1t_P 3i20_P 3i22_P 2qam_P* 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* ... (P:) Length = 115 Score = 143 bits (362), Expect = 1e-35 Identities = 62/118 (52%), Positives = 83/118 (70%), Gaps = 5/118 (4%) Query: 2 NIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINK 61 NII +L+ E+M K+ +P F PGDT+ VK + EG K R+QA+EGV IA RG++ Sbjct: 3 NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHS 57 Query: 62 NFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTG 119 FTVRKIS GEG+ R+F +SP++ I+V RRG VR++KLYYL++ GKAARIKE Sbjct: 58 AFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERLN 115 >2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (K:) Length = 98 Score = 133 bits (336), Expect = 1e-32 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 21 LPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPL 80 +P+F G L V T +I + G+CI RSGRG+ F +R + G+G+ F L Sbjct: 1 IPEFYVGSILRVTTADPYA-SGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL 59 Query: 81 YSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKEN 117 Y+P +Q+I V++ K L YL+D + + N Sbjct: 60 YNPRVQEIQVVKLEKRLDDSLLYLRDALPEYSTFDVN 96 >3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (R:143-233) Length = 91 Score = 127 bits (322), Expect = 5e-31 Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 24 FSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSP 83 GD + ++ + E K R+ Y+G+ I+R GI+ +R+I G G+ +FPLYSP Sbjct: 1 IRTGDIVQIRLEVPEN-KRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSP 59 Query: 84 MIQDITVIRRGKVRRSKLYYLQDLRGKAARIK 115 I++I V+ KVR+++LYYL+D + + K Sbjct: 60 NIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 91 >2j01_T 50S ribosomal protein L19; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (T:19-98) Length = 80 Score = 116 bits (293), Expect = 1e-27 Identities = 41/80 (51%), Positives = 59/80 (73%) Query: 21 LPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPL 80 LP+F PGDT+ V + EG+++RIQ +EG+ I G N FTVRK+SYG G+ R+FPL Sbjct: 1 LPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL 60 Query: 81 YSPMIQDITVIRRGKVRRSK 100 +SP+IQ I +++RG+ RR+K Sbjct: 61 HSPLIQKIDIVQRGRARRAK 80 >1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} (A:) Length = 61 Score = 23.8 bits (52), Expect = 8.9 Identities = 9/35 (25%), Positives = 16/35 (45%) Query: 104 LQDLRGKAARIKENTGKRAKALNEEVRRAALPEKE 138 L+ + +A I E KR + +E + A E+ Sbjct: 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERT 38 >1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} (B:134-226) Length = 93 Score = 23.9 bits (52), Expect = 9.0 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%) Query: 22 PKFSPGDTLCVKTIITEGDKSRIQAY 47 PKF GD + T +G +R Y Sbjct: 4 PKFKEGDVVRFSTASPKG-HARRARY 28 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.136 0.377 Gapped Lambda K H 0.267 0.0676 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,063,647 Number of extensions: 46418 Number of successful extensions: 95 Number of sequences better than 10.0: 1 Number of HSP's gapped: 93 Number of HSP's successfully gapped: 14 Length of query: 141 Length of database: 4,956,049 Length adjustment: 80 Effective length of query: 61 Effective length of database: 2,251,649 Effective search space: 137350589 Effective search space used: 137350589 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.1 bits)