RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780715|ref|YP_003065128.1| 50S ribosomal protein L19
[Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)



>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal
           subunit, ribonucleoprotein, RNA-binding, rRNA-binding,
           tRNA-binding, methylation; 2.91A {Deinococcus
           radiodurans} (M:24-166)
          Length = 143

 Score =  144 bits (365), Expect = 4e-36
 Identities = 60/121 (49%), Positives = 83/121 (68%)

Query: 21  LPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPL 80
           LP F PGDT+ V T + EG+++R QA+EGV IA +G G  K+FTVRKIS+GEG+ R+FP 
Sbjct: 1   LPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF 60

Query: 81  YSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKALNEEVRRAALPEKEMS 140
            SP++  +T++ RGKVRR+KLYYL++LRGKAARIK +  +  K      +  A      +
Sbjct: 61  ASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSDRSRVMKDAARAQQDKANASASQA 120

Query: 141 K 141
            
Sbjct: 121 A 121


>3i1n_P 50S ribosomal protein L19; ribosome structure, protein-RNA
           complex, acetylation, ribonucleoprotein, ribosomal
           protein, RNA-binding, rRNA- binding, methylation; 3.19A
           {Escherichia coli k-12} PDB: 1vs8_P 3e1b_I 3e1d_I 1vs6_P
           3i1p_P 3i1r_P 3i1t_P 3i20_P 3i22_P 2qam_P* 1p85_N 1p86_N
           2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P*
           2qao_P* ... (P:)
          Length = 115

 Score =  143 bits (362), Expect = 1e-35
 Identities = 62/118 (52%), Positives = 83/118 (70%), Gaps = 5/118 (4%)

Query: 2   NIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINK 61
           NII +L+ E+M     K+ +P F PGDT+ VK  + EG K R+QA+EGV IA   RG++ 
Sbjct: 3   NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHS 57

Query: 62  NFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTG 119
            FTVRKIS GEG+ R+F  +SP++  I+V RRG VR++KLYYL++  GKAARIKE   
Sbjct: 58  AFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERLN 115


>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial
           ribosome, large ribosomal subunit, ribosomal RNA; 12.10A
           {Bos taurus} (K:)
          Length = 98

 Score =  133 bits (336), Expect = 1e-32
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 21  LPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPL 80
           +P+F  G  L V T        +I  + G+CI RSGRG+   F +R +  G+G+   F L
Sbjct: 1   IPEFYVGSILRVTTADPYA-SGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL 59

Query: 81  YSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKEN 117
           Y+P +Q+I V++  K     L YL+D   + +    N
Sbjct: 60  YNPRVQEIQVVKLEKRLDDSLLYLRDALPEYSTFDVN 96


>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach
           chloroplast ribosome, ribonucleoprotein particle,
           macromolecular complex; 9.40A {Spinacea oleracea}
           (R:143-233)
          Length = 91

 Score =  127 bits (322), Expect = 5e-31
 Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 24  FSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSP 83
              GD + ++  + E  K R+  Y+G+ I+R   GI+    +R+I  G G+  +FPLYSP
Sbjct: 1   IRTGDIVQIRLEVPEN-KRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSP 59

Query: 84  MIQDITVIRRGKVRRSKLYYLQDLRGKAARIK 115
            I++I V+   KVR+++LYYL+D   + +  K
Sbjct: 60  NIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 91


>2j01_T 50S ribosomal protein L19; ribosome, tRNA, paromomycin,
           mRNA, translation; 2.8A {Thermus thermophilus} (T:19-98)
          Length = 80

 Score =  116 bits (293), Expect = 1e-27
 Identities = 41/80 (51%), Positives = 59/80 (73%)

Query: 21  LPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPL 80
           LP+F PGDT+ V   + EG+++RIQ +EG+ I     G N  FTVRK+SYG G+ R+FPL
Sbjct: 1   LPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL 60

Query: 81  YSPMIQDITVIRRGKVRRSK 100
           +SP+IQ I +++RG+ RR+K
Sbjct: 61  HSPLIQKIDIVQRGRARRAK 80


>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A
           {Escherichia coli} (A:)
          Length = 61

 Score = 23.8 bits (52), Expect = 8.9
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 104 LQDLRGKAARIKENTGKRAKALNEEVRRAALPEKE 138
           L+  + +A  I E   KR   + +E +  A  E+ 
Sbjct: 4   LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERT 38


>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid,
          non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A
          {Pseudonocardia thermophila} (B:134-226)
          Length = 93

 Score = 23.9 bits (52), Expect = 9.0
 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)

Query: 22 PKFSPGDTLCVKTIITEGDKSRIQAY 47
          PKF  GD +   T   +G  +R   Y
Sbjct: 4  PKFKEGDVVRFSTASPKG-HARRARY 28


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,063,647
Number of extensions: 46418
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 14
Length of query: 141
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 61
Effective length of database: 2,251,649
Effective search space: 137350589
Effective search space used: 137350589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)