RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780715|ref|YP_003065128.1| 50S ribosomal protein L19
[Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)



>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli
           [TaxId: 562]}
          Length = 114

 Score =  134 bits (338), Expect = 3e-33
 Identities = 62/115 (53%), Positives = 83/115 (72%), Gaps = 5/115 (4%)

Query: 2   NIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINK 61
           NII +L+ E+M     K+ +P F PGDT+ VK  + EG K R+QA+EGV IA   RG++ 
Sbjct: 2   NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHS 56

Query: 62  NFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKE 116
            FTVRKIS GEG+ R+F  +SP++  I+V RRG VR++KLYYL++  GKAARIKE
Sbjct: 57  AFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKE 111


>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
           thermophilus [TaxId: 274]}
          Length = 138

 Score =  125 bits (314), Expect = 2e-30
 Identities = 51/138 (36%), Positives = 83/138 (60%), Gaps = 5/138 (3%)

Query: 1   MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGIN 60
             +I  ++   +     +  LP+F PGDT+ V   + EG+++RIQ +EG+ I     G N
Sbjct: 4   GALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFN 58

Query: 61  KNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGK 120
             FTVRK+SYG G+ R+FPL+SP+IQ I +++RG+ RR+KLY++++L  +  R K    +
Sbjct: 59  TTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADR 118

Query: 121 RAKALNEEVRRAALPEKE 138
           +    +    RAA  E +
Sbjct: 119 KRIDQDRAAERAAKEEAQ 136


>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 108

 Score =  116 bits (293), Expect = 7e-28
 Identities = 50/106 (47%), Positives = 74/106 (69%), Gaps = 6/106 (5%)

Query: 1   MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGIN 60
             ++  ++ +        R LP F PGDT+ V T + EG+++R QA+EGV IA +G G  
Sbjct: 9   GELLRGIEQDHT------RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSR 62

Query: 61  KNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQD 106
           K+FTVRKIS+GEG+ R+FP  SP++  +T++ RGKVRR+KLYYL++
Sbjct: 63  KSFTVRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 108


>d2qdyb1 b.34.4.4 (B:1-211) Iron-containing nitrile hydratase
           {Rhodococcus erythropolis [TaxId: 1833]}
          Length = 211

 Score = 25.7 bits (56), Expect = 1.4
 Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 10/71 (14%)

Query: 17  SKRSLPKFSPGDTLCVKTIITEGDKSRIQAY----EG-VCIARSGRGINKNFTVRKISYG 71
           +      F  G  + V+     G   R+ AY     G +    + +    +       +G
Sbjct: 116 APVETTTFEVGQRVRVRDEYVPG-HIRMPAYCRGRVGTISHRTTEKWPFPDAI----GHG 170

Query: 72  EGMNRLFPLYS 82
                  P Y 
Sbjct: 171 RNDAGEEPTYH 181


>d1ugpb_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase
           {Pseudonocardia thermophila [TaxId: 1848]}
          Length = 226

 Score = 25.7 bits (56), Expect = 1.4
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 5/39 (12%)

Query: 22  PKFSPGDTLCVKTIITEGDKSRIQAY----EGVCIARSG 56
           PKF  GD +   T   +G  +R   Y     G  +   G
Sbjct: 137 PKFKEGDVVRFSTASPKG-HARRARYVRGKTGTVVKHHG 174


>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 471

 Score = 24.7 bits (52), Expect = 3.3
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 90  VIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKALNEEVRRA 132
           ++RR +V R     ++   GK  R       + K L E   R 
Sbjct: 408 LVRREEVARVVKGLMEGEEGKGVR------NKMKELKEAACRV 444


>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus
           smithii [TaxId: 1479]}
          Length = 229

 Score = 24.5 bits (53), Expect = 3.6
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)

Query: 22  PKFSPGDTLCVKTIITEGDKSRIQAY----EGVCIARSG 56
           P+F  G+ +  + I   G  +R   Y     GV     G
Sbjct: 140 PRFEVGERIKTRNIHPTG-HTRFPRYVRDKYGVIEEVYG 177


>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
           {Escherichia coli [TaxId: 562]}
          Length = 61

 Score = 23.8 bits (52), Expect = 6.0
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 104 LQDLRGKAARIKENTGKRAKALNEEVRRAALPEKE 138
           L+  + +A  I E   KR   + +E +  A  E+ 
Sbjct: 4   LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERT 38


>d1unaa_ d.85.1.1 (A:) GA coat protein {Bacteriophage GA [TaxId:
          12018]}
          Length = 129

 Score = 23.5 bits (50), Expect = 6.4
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 42 SRIQAYEGVCIARSGRGINKNFTVR 66
          SR QAY      R+     + +T++
Sbjct: 36 SRSQAYRVTASYRASGADKRKYTIK 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 524,075
Number of extensions: 23483
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 10
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)