HHsearch alignment for GI: 254780716 and conserved domain: COG0074
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion].
Probab=96.19 E-value=0.098 Score=32.32 Aligned_cols=220 Identities=13% Similarity=0.139 Sum_probs=128.2
Q ss_pred CEEEEEEC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEECCCHHHH
Q ss_conf 80569815-71116889999978985999739989999999712211278403289899986057788999976990699
Q gi|254780716|r 4 ADIGIIGL-GSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMMVTDGDPV 82 (475)
Q Consensus 4 ~~IGiIGL-G~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~~v 82 (475)
T Consensus 9 tkvivqGitg~~gtfh~~~~l~yGt~~V~-GvtPgk-------gG~~~~g~PVf~tV~EA~~~~-~a~~svI~Vp~~~aa 79 (293)
T COG0074 9 TKVIVQGITGKQGTFHTEQMLAYGTKIVG-GVTPGK-------GGQTILGLPVFNTVEEAVKET-GANASVIFVPPPFAA 79 (293)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHCCCEEE-CCCCCC-------CCEEECCCCHHHHHHHHHHHH-CCCEEEEECCCHHHH
T ss_conf 74898336542003889999972985664-236897-------743883754789999998702-897799964817789
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 99999997207899899967986578999999999847994306754676000356843788454899988899999875
Q gi|254780716|r 83 DQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSIS 162 (475)
Q Consensus 83 ~~vi~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~kgi~fid~pVSGG~~gA~~G~slMvGG~~~~~~~~~piL~~ia 162 (475)
T Consensus 80 dai~EAida~i--~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPncpGiI~Pg~~kiGimp~----------------- 140 (293)
T COG0074 80 DAILEAIDAGI--KLVVIITEGIPVLDMLELKRYAREKGTRLIGPNCPGIITPGECKIGIMPG----------------- 140 (293)
T ss_pred HHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEECHH-----------------
T ss_conf 99999985799--57999959998889999999998669799879999637478533510523-----------------
Q ss_pred CCCCCCCEEEEECCCCHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHCCC-------CCCCHH
Q ss_conf 015678618985698746789--88776787888999--8999999996428997899999986068-------844307
Q gi|254780716|r 163 AKYQNSPCCALLGPDGSGHFV--KMIHNGIEYANMQL--IADIYGILRDSLNKNPLEISHLFSKWDT-------GKLSSY 231 (475)
Q Consensus 163 ak~~~~~cv~y~G~~GsGh~v--KMVhNgIey~~mq~--iaE~~~~l~~~~~~~~~~i~~vf~~w~~-------~~~~sy 231 (475)
T Consensus 141 -~i~~~G~IGiVSrSGTLTyE~~~qlt~---~G~GqS~~IGiGGD---pi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~ 213 (293)
T COG0074 141 -NIYKPGNIGIVSRSGTLTYEAVSQLTE---AGLGQSTAIGIGGD---PIPGTSFIDALEMFEADPETEAIVMIGEIGGP 213 (293)
T ss_pred -HHCCCCCEEEEECCCCHHHHHHHHHHH---CCCCEEEEEEECCC---CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf -405788569996686639999999976---38855899985788---76881599999986458674079999267993
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 99999999974056799952001023336
Q gi|254780716|r 232 LIKITAEILSSSDTITGMPIIDVICDKAS 260 (475)
Q Consensus 232 Ll~i~~~il~~k~~~~g~~lid~i~d~~~ 260 (475)
T Consensus 214 aEe~AA~~i~~~--~~~KPVVa~iaG~ta 240 (293)
T COG0074 214 AEEEAAEYIKAN--ATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHHHHHH--CCCCCEEEEEECCCC
T ss_conf 899999999963--468986999843679