HHsearch alignment for GI: 254780716 and conserved domain: COG0771

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].
Probab=96.95  E-value=0.013  Score=38.72  Aligned_cols=126  Identities=16%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEC-CCHHHHHHHCCCCCEEEEE--CCC-H
Q ss_conf             80569815711168899999789859997399899999997122112784032-8989998605778899997--699-0
Q gi|254780716|r    4 ADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVT-KNLEQMVEAVCKPRKILMM--VTD-G   79 (475)
Q Consensus         4 ~~IGiIGLG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~-~s~~e~v~~l~~pr~Iil~--vp~-g   79 (475)
T Consensus         8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~-~~~~~~i~~~~g~~~~--~~~~~~d~vV~SPGi~~~~   83 (448)
T COG0771           8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQ-PLLLEGIEVELGSHDD--EDLAEFDLVVKSPGIPPTH   83 (448)
T ss_pred             CEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCC-CCHHHH-HHHCCCCEEECCCCCH--HCCCCCCEEEECCCCCCCC
T ss_conf             97999926651099999999779869998389876-532344-4420372231376411--0013477899899999988


Q ss_pred             HHHHHHHH---------HHHHCC--CCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCC
Q ss_conf             69999999---------997207--8998999679865789999999998479943067546760
Q gi|254780716|r   80 DPVDQLID---------KLKPLL--SPEDILLDGGNSHFCDTQIRSLQLSEKGIYFIGIGVSGGV  133 (475)
Q Consensus        80 ~~v~~vi~---------~l~~~l--~~g~iiID~sts~~~~t~~~~~~l~~kgi~fid~pVSGG~  133 (475)
T Consensus        84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p  148 (448)
T COG0771          84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP  148 (448)
T ss_pred             HHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf             89999998699377488889874489998999799962889999999998559983213516713