HHsearch alignment for GI: 254780716 and conserved domain: PRK00141

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.84  E-value=0.041  Score=35.13  Aligned_cols=118  Identities=13%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEE--CCCH
Q ss_conf             98805698157111688999997898599973998999999971221127840328989998605778899997--6990
Q gi|254780716|r    2 KQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMM--VTDG   79 (475)
Q Consensus         2 ~k~~IGiIGLG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~--vp~g   79 (475)
T Consensus        17 ~~-kvlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~--~~~~-~~~~~~---~~~~~d~vV~SPGI~~~   89 (476)
T PRK00141         17 RG-RVLVAGAGVSGLGIAKMLSELGCDVVVADDNETQRHMLIEVVDV--ADIS-TAQASD---ALDSYSIVVTSPGWRPD   89 (476)
T ss_pred             CC-CEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCC--CEEC-CCCHHH---HHCCCCEEEECCCCCCC
T ss_conf             99-88999227889999999997899799998998703578874798--5651-553065---64689999989978997


Q ss_pred             H-HHHHHHH---------HHHHCC-------CCCC-EEEECCCCCHHHHHHHHHHHHHCCCCEEC
Q ss_conf             6-9999999---------997207-------8998-99967986578999999999847994306
Q gi|254780716|r   80 D-PVDQLID---------KLKPLL-------SPED-ILLDGGNSHFCDTQIRSLQLSEKGIYFIG  126 (475)
Q Consensus        80 ~-~v~~vi~---------~l~~~l-------~~g~-iiID~sts~~~~t~~~~~~l~~kgi~fid  126 (475)
T Consensus        90 ~p~l~~a~~~gi~viseiel~~~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~  154 (476)
T PRK00141         90 SPLLVDAQSAGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQAGGFAAVA  154 (476)
T ss_pred             CHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             99999999879957719999998611643367776388968996798999999999837997289