HHsearch alignment for GI: 254780716 and conserved domain: PRK00141
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.84 E-value=0.041 Score=35.13 Aligned_cols=118 Identities=13% Similarity=0.169 Sum_probs=66.6
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEE--CCCH
Q ss_conf 98805698157111688999997898599973998999999971221127840328989998605778899997--6990
Q gi|254780716|r 2 KQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMM--VTDG 79 (475)
Q Consensus 2 ~k~~IGiIGLG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~--vp~g 79 (475)
T Consensus 17 ~~-kvlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~--~~~~-~~~~~~---~~~~~d~vV~SPGI~~~ 89 (476)
T PRK00141 17 RG-RVLVAGAGVSGLGIAKMLSELGCDVVVADDNETQRHMLIEVVDV--ADIS-TAQASD---ALDSYSIVVTSPGWRPD 89 (476)
T ss_pred CC-CEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCC--CEEC-CCCHHH---HHCCCCEEEECCCCCCC
T ss_conf 99-88999227889999999997899799998998703578874798--5651-553065---64689999989978997
Q ss_pred H-HHHHHHH---------HHHHCC-------CCCC-EEEECCCCCHHHHHHHHHHHHHCCCCEEC
Q ss_conf 6-9999999---------997207-------8998-99967986578999999999847994306
Q gi|254780716|r 80 D-PVDQLID---------KLKPLL-------SPED-ILLDGGNSHFCDTQIRSLQLSEKGIYFIG 126 (475)
Q Consensus 80 ~-~v~~vi~---------~l~~~l-------~~g~-iiID~sts~~~~t~~~~~~l~~kgi~fid 126 (475)
T Consensus 90 ~p~l~~a~~~gi~viseiel~~~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~ 154 (476)
T PRK00141 90 SPLLVDAQSAGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQAGGFAAVA 154 (476)
T ss_pred CHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999879957719999998611643367776388968996798999999999837997289