HHsearch alignment for GI: 254780716 and conserved domain: PRK00683
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.95 E-value=0.022 Score=37.18 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=69.3
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEE--CCC
Q ss_conf 998805698157111688999997898599973998999999971221127840328989998605778899997--699
Q gi|254780716|r 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMM--VTD 78 (475)
Q Consensus 1 M~k~~IGiIGLG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~--vp~ 78 (475)
T Consensus 1 ~~~KkvlV~GlG~SG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~------~~~~~~~~~~~~---~d~vv~SPGi~~ 71 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSVARFLAQKGVYVIGVDNSLEALQSCPYIHE------RYLEGAEEFPEQ---VDLVVRSPGIKP 71 (418)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCHHHH------HCCCCHHHCCCC---CCEEEECCCCCC
T ss_conf 99866999808887999999999782989998298145454614555------405623324234---989998998599
Q ss_pred HHH-HHHHHH-------H--HH---HCCCCCC-EEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCC
Q ss_conf 069-999999-------9--97---2078998-9996798657899999999984799430675467
Q gi|254780716|r 79 GDP-VDQLID-------K--LK---PLLSPED-ILLDGGNSHFCDTQIRSLQLSEKGIYFIGIGVSG 131 (475)
Q Consensus 79 g~~-v~~vi~-------~--l~---~~l~~g~-iiID~sts~~~~t~~~~~~l~~kgi~fid~pVSG 131 (475)
T Consensus 72 ~~p~~~~a~~~~i~i~seiel~~~~~~~~~~~~IaITGTNGKTTTt~ll~~iL~~~g~~~~~~GNIG 138 (418)
T PRK00683 72 YHPWVEAAVALKIPVVTDIQLAFQTPEFQRYPSLGITGSTGKTTTILFLEHLLRTLGIPAFAMGNIG 138 (418)
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 8899999998699754079999742441479879997689866099999999986799818880346