HHsearch alignment for GI: 254780716 and conserved domain: PRK01390

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=97.08  E-value=0.0096  Score=39.79  Aligned_cols=116  Identities=15%  Similarity=0.152  Sum_probs=65.7

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEE--CCCHHH
Q ss_conf             805698157111688999997898599973998999999971221127840328989998605778899997--699069
Q gi|254780716|r    4 ADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMM--VTDGDP   81 (475)
Q Consensus         4 ~~IGiIGLG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~--vp~g~~   81 (475)
T Consensus        10 k~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~~~~~~~~~~g~~~-------~~~~~~--~~~~~~~iV~SPGIp~~~p   80 (457)
T PRK01390         10 KTVALFGLGGSGLATARALKAGGAEVIAWDDNPDSVAKAAAAGIAT-------ADLRTA--DWSQFAALVLSPGVPLTHP   80 (457)
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCC-------CCCCCC--CCCCCCEEEECCCCCCCCC
T ss_conf             9899994369999999999978997999939920668998759831-------455412--3203878999998886566


Q ss_pred             -----HHHHHH---------HHH-----HCCCCCCEE-EECCCCCHHHHHHHHHHHHHCCCCEECCC
Q ss_conf             -----999999---------997-----207899899-96798657899999999984799430675
Q gi|254780716|r   82 -----VDQLID---------KLK-----PLLSPEDIL-LDGGNSHFCDTQIRSLQLSEKGIYFIGIG  128 (475)
Q Consensus        82 -----v~~vi~---------~l~-----~~l~~g~ii-ID~sts~~~~t~~~~~~l~~kgi~fid~p  128 (475)
T Consensus        81 ~~~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gG  147 (457)
T PRK01390         81 KPHWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGG  147 (457)
T ss_pred             CCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             7319999999859918600899999987325789889992899649899999999997399869966