HHsearch alignment for GI: 254780716 and conserved domain: PRK09186

>PRK09186 flagellin modification protein A; Provisional.
Probab=95.78  E-value=0.14  Score=31.10  Aligned_cols=84  Identities=18%  Similarity=0.251  Sum_probs=59.6

Q ss_pred             CCEEEEE--ECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEE--EECCC
Q ss_conf             8805698--1571116889999978985999739989999999712211278403289899986057788999--97699
Q gi|254780716|r    3 QADIGII--GLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKIL--MMVTD   78 (475)
Q Consensus         3 k~~IGiI--GLG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Ii--l~vp~   78 (475)
T Consensus         3 ~gK~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~-----------------~~~~v~~~~~Dvt~   65 (255)
T PRK09186          3 EGKTILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTI-----------------EKTKLTLVELDITD   65 (255)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH-----------------CCCEEEEEECCCCC
T ss_conf             9598999795868999999999987999999969889999999999870-----------------59807999846899


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             0699999999972078998999679
Q gi|254780716|r   79 GDPVDQLIDKLKPLLSPEDILLDGG  103 (475)
Q Consensus        79 g~~v~~vi~~l~~~l~~g~iiID~s  103 (475)
T Consensus        66 ~~~v~~~~~~~~~~~g~id~lVnnA   90 (255)
T PRK09186         66 QESLEEFLSKSQERYGKIDGAVNCA   90 (255)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             9999999999999819977899757