HHsearch alignment for GI: 254780716 and conserved domain: PRK09186
>PRK09186 flagellin modification protein A; Provisional.
Probab=95.78 E-value=0.14 Score=31.10 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=59.6
Q ss_pred CCEEEEE--ECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEE--EECCC
Q ss_conf 8805698--1571116889999978985999739989999999712211278403289899986057788999--97699
Q gi|254780716|r 3 QADIGII--GLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKIL--MMVTD 78 (475)
Q Consensus 3 k~~IGiI--GLG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Ii--l~vp~ 78 (475)
T Consensus 3 ~gK~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~-----------------~~~~v~~~~~Dvt~ 65 (255)
T PRK09186 3 EGKTILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTI-----------------EKTKLTLVELDITD 65 (255)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH-----------------CCCEEEEEECCCCC
T ss_conf 9598999795868999999999987999999969889999999999870-----------------59807999846899
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 0699999999972078998999679
Q gi|254780716|r 79 GDPVDQLIDKLKPLLSPEDILLDGG 103 (475)
Q Consensus 79 g~~v~~vi~~l~~~l~~g~iiID~s 103 (475)
T Consensus 66 ~~~v~~~~~~~~~~~g~id~lVnnA 90 (255)
T PRK09186 66 QESLEEFLSKSQERYGKIDGAVNCA 90 (255)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999999999819977899757