HHsearch alignment for GI: 254780716 and conserved domain: TIGR01317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=90.76 E-value=0.37 Score=28.05 Aligned_cols=31 Identities=16% Similarity=0.479 Sum_probs=29.7
Q ss_pred EEEEEECCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 0569815711168899999789859997399
Q gi|254780716|r 5 DIGIIGLGSMGSNLSLNILDKGFRLAVYNKD 35 (475)
Q Consensus 5 ~IGiIGLG~MG~~mA~nL~~~G~~V~vydr~ 35 (475)
T Consensus 153 kVAVVGSGPAGLAaA~qLnrAGH~VTVfER~ 183 (517)
T TIGR01317 153 KVAVVGSGPAGLAAADQLNRAGHTVTVFERE 183 (517)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 6899756757999999985358838997436